RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 031640
         (156 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 92.1 bits (228), Expect = 3e-25
 Identities = 59/132 (44%), Positives = 82/132 (62%), Gaps = 2/132 (1%)

Query: 24  DDTWNGGQFQHVYQFSPPMMIPTRIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCI 83
           D   +                  R+DW +TPE HVFKADL G  K +VKVE+EDG VL +
Sbjct: 21  DTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVV 80

Query: 84  SGEKKIEKEERTDEGHRLEVAVGKFSRRFQLPENAMVDRITAHIANSTLTVTVPKKDIKK 143
           SGE+  EKE++ D+ HR+E + GKF RRF+L E+A V+ + A + N  LTVTVPK ++KK
Sbjct: 81  SGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKK 140

Query: 144 HHGHSRSIKITG 155
                ++I+I+G
Sbjct: 141 P--EVKAIQISG 150


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 65.8 bits (160), Expect = 2e-15
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 4/106 (3%)

Query: 48  IDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVGK 107
           I   +  +     A L G +K D+ +      +   +    +   E     +       +
Sbjct: 13  ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEE 72

Query: 108 FSRRFQLPENAMVDRITAHIANSTLTVTVPKKDIKKHHGHSRSIKI 153
             R  +LP     +  +A   N  L+V +PK +        + I I
Sbjct: 73  IYRTIKLPATVKEENASAKFENGVLSVILPKAESSI----KKGINI 114


>d1zjca1 e.60.1.1 (A:3-415) Aminopeptidase S, AMPS {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 413

 Score = 32.3 bits (73), Expect = 0.018
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 59  FKADLSGFHKHDVKVEIEDGRVL---CISGEKKIEKEERTDEGHRL--EVAVGK----FS 109
                +G      K+  +DG ++      GE  ++    TDEG R   EVA+       S
Sbjct: 269 LPLSYNGTIIDQFKLMFKDGEIIDFSAEKGEAVLKDLINTDEGSRRLGEVALVPDDSPIS 328

Query: 110 RRFQLPENAMVD-RITAHIA 128
            R  +  N + D     H+A
Sbjct: 329 NRNTIFYNTLFDENAACHLA 348


>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 26.4 bits (58), Expect = 0.78
 Identities = 14/94 (14%), Positives = 36/94 (38%), Gaps = 16/94 (17%)

Query: 47  RIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEERTDEGHRLEVAVG 106
           + DW+ T    V    +    K+DV VE  +  +  +           + E + L++   
Sbjct: 4   KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLP-------SGEDYNLKL--- 53

Query: 107 KFSRRFQLPENAMVDRITAHIANSTLTVTVPKKD 140
                 +L    + ++ T  + ++ + + + K +
Sbjct: 54  ------ELLHPIIPEQSTFKVLSTKIEIKLKKPE 81


>d1w36c1 c.37.1.19 (C:1-347) Exodeoxyribonuclease V gamma chain
           (RecC), N-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 347

 Score = 26.5 bits (58), Expect = 1.4
 Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 7/98 (7%)

Query: 34  HVYQFSPPMMIPTRIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCISGEKKIEKEE 93
           H+   +P      R  W D  +       L+   +H  +           +  +    + 
Sbjct: 237 HLLFTNP-----CRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDG 291

Query: 94  RTDEGHRLEVAVGKFSRRFQ--LPENAMVDRITAHIAN 129
             D G+ L  + GK  R +   L +      + A +  
Sbjct: 292 EQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDV 329


>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 81

 Score = 24.5 bits (53), Expect = 2.6
 Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 63 LSGFHKHDVKVEIEDGRVL--CISGEKKIE 90
          + G H   V    EDG VL  C +  K I 
Sbjct: 3  IKGNHLVKVYDYQEDGSVLLTCDAEAKNIT 32


>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
           [TaxId: 562]}
          Length = 222

 Score = 24.6 bits (52), Expect = 5.4
 Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 1/93 (1%)

Query: 25  DTWNGGQFQHVYQFSPPMMIPTRIDWHDTPECHVFKADLSGFHKHDVKVEIEDGRVLCIS 84
                   +   +  P   +  +++  +  +   F   ++ +H     + I   R+   S
Sbjct: 131 QLVTETLNERQARVLPLNELKDKLEAMEGVQFKQFN-SITDYHSLMFDLGIIARRLRSAS 189

Query: 85  GEKKIEKEERTDEGHRLEVAVGKFSRRFQLPEN 117
              K  +         +  A+ +  R + LPEN
Sbjct: 190 DRSKFYRLIEASLYGGISSAITRSLRDYLLPEN 222


>d2i71a1 e.72.1.1 (A:1-377) Hypothetical protein SSO1389 {Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 377

 Score = 24.5 bits (53), Expect = 7.1
 Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 64  SGFHKHDVKVEIEDGRVLCISGEKKIEKEER 94
            G       V  E  +V  ++   KI++ ER
Sbjct: 346 GGLPYAGTYVYKEKDKV-YVTYGDKIDEIER 375


>d1s4ca1 b.82.2.7 (A:1-143) Hypothetical protein HI0227 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 143

 Score = 23.6 bits (51), Expect = 9.7
 Identities = 5/29 (17%), Positives = 11/29 (37%)

Query: 72  KVEIEDGRVLCISGEKKIEKEERTDEGHR 100
           + +I D   + +   +  E   +  E H 
Sbjct: 38  RHDINDQIYMNVMEPETAEPSSKKAELHH 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 640,974
Number of extensions: 29955
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 15
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.0 bits)