BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031642
         (156 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O28033|Y2251_ARCFU Protein AF_2251 OS=Archaeoglobus fulgidus (strain ATCC 49558 /
           VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2251
           PE=3 SV=1
          Length = 229

 Score = 34.7 bits (78), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 19/97 (19%), Positives = 47/97 (48%), Gaps = 9/97 (9%)

Query: 47  CQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCL 106
            +NV ++      E++  +  ++E    G       Y  + +  N  +++    L+++  
Sbjct: 134 VENVAVMPGVP-AEMENTFEKILERFEKG------EYHEEVVKVNGFEVKIVDKLNQVVR 186

Query: 107 EFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESL 143
           + PD+ IG Y K   G +++ F G+D+ +++ A++  
Sbjct: 187 DNPDVEIGSYPKP--GYVMVKFSGRDKEKVKKAVKQF 221


>sp|Q8VZ17|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6
           OS=Arabidopsis thaliana GN=SUVH6 PE=2 SV=2
          Length = 790

 Score = 32.0 bits (71), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 3/22 (13%)

Query: 20  YPRWLCCRKVPP-NCCITTSCS 40
           YP W  CR VPP +CC TT C+
Sbjct: 541 YPDW--CRPVPPKSCCCTTRCT 560


>sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus HKU5 GN=rep PE=3 SV=1
          Length = 7182

 Score = 30.0 bits (66), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 8    TTLVVRRLLGYKYPRWLCCRKVPPNCCITTSCSYLWYIKCQNVIILTATNVTELDKEWNC 67
            +TL + + L  +Y R+  C       CITT+ S+  Y    N        V   D  +  
Sbjct: 3046 STLRITKTLATRYCRFGSCEDANEGVCITTNGSWAIY----NDHYANKPGVYCGDNYF-- 3099

Query: 68   LIELLRSGGLSLMEPYTSKSLTTNLS 93
              +++R  GLSL +P T   L+T+L+
Sbjct: 3100 --DIVRRLGLSLFQPVTYFQLSTSLA 3123


>sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus HKU5 GN=1a PE=3 SV=1
          Length = 4481

 Score = 30.0 bits (66), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 8    TTLVVRRLLGYKYPRWLCCRKVPPNCCITTSCSYLWYIKCQNVIILTATNVTELDKEWNC 67
            +TL + + L  +Y R+  C       CITT+ S+  Y    N        V   D  +  
Sbjct: 3046 STLRITKTLATRYCRFGSCEDANEGVCITTNGSWAIY----NDHYANKPGVYCGDNYF-- 3099

Query: 68   LIELLRSGGLSLMEPYTSKSLTTNLS 93
              +++R  GLSL +P T   L+T+L+
Sbjct: 3100 --DIVRRLGLSLFQPVTYFQLSTSLA 3123


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.136    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,788,424
Number of Sequences: 539616
Number of extensions: 1924263
Number of successful extensions: 4457
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4452
Number of HSP's gapped (non-prelim): 8
length of query: 156
length of database: 191,569,459
effective HSP length: 107
effective length of query: 49
effective length of database: 133,830,547
effective search space: 6557696803
effective search space used: 6557696803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)