Query 031642
Match_columns 156
No_of_seqs 100 out of 173
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 04:47:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kbq_A Protein TA0487; structu 98.4 2.9E-07 1E-11 72.7 4.7 43 29-73 121-169 (172)
2 2ctf_A Vigilin; K homology typ 88.7 0.89 3.1E-05 32.4 5.5 46 98-148 46-91 (102)
3 3cim_A Carbon dioxide-concentr 82.5 1.6 5.5E-05 31.6 4.2 46 103-149 21-66 (99)
4 2ctj_A Vigilin; K homology typ 77.8 2.6 9E-05 29.6 4.0 50 98-149 36-85 (95)
5 2a1b_A CCMK2, carbon dioxide c 75.7 3.9 0.00013 30.4 4.6 46 103-149 21-66 (116)
6 2a10_A CCMK4, carbon dioxide c 75.3 4.5 0.00015 30.5 4.9 46 102-148 22-67 (125)
7 1y51_A Phosphocarrier protein 63.9 17 0.00057 24.9 5.5 69 83-154 1-88 (88)
8 1s3a_A NADH-ubiquinone oxidore 63.2 11 0.00036 26.6 4.5 64 83-146 19-100 (102)
9 3ihs_A Phosphocarrier protein 61.5 24 0.00083 25.5 6.3 60 81-141 23-102 (106)
10 3cgi_A Propanediol utilization 58.9 17 0.00057 27.2 5.1 87 43-148 16-103 (124)
11 3bn4_A Carbon dioxide-concentr 58.8 18 0.00061 27.1 5.2 47 102-149 20-66 (122)
12 3v42_A Folliculin; tumor suppr 58.7 8.4 0.00029 31.6 3.7 28 123-150 31-58 (226)
13 3n79_A PDUT; FES cluster, BMC 56.2 21 0.00073 28.2 5.6 48 101-149 111-160 (192)
14 3n79_A PDUT; FES cluster, BMC 54.9 19 0.00066 28.4 5.1 44 105-149 23-66 (192)
15 1rwu_A Hypothetical UPF0250 pr 54.8 33 0.0011 24.9 6.0 54 91-145 44-101 (109)
16 3i96_A Ethanolamine utilizatio 53.5 18 0.00062 27.0 4.5 53 91-149 47-99 (119)
17 1sph_A Histidine-containing ph 53.3 30 0.001 23.6 5.3 69 83-154 1-88 (88)
18 3nwg_A Microcompartments prote 51.6 26 0.00087 27.4 5.3 44 104-148 22-65 (182)
19 1q5y_A NIKR, nickel responsive 51.4 54 0.0018 22.2 6.4 54 92-146 14-70 (85)
20 3nwg_A Microcompartments prote 49.0 35 0.0012 26.6 5.7 46 102-148 112-159 (182)
21 1uuy_A CNX1, molybdopterin bio 48.0 20 0.00067 26.7 4.0 31 41-74 124-157 (167)
22 3gg2_A Sugar dehydrogenase, UD 47.9 48 0.0016 28.6 6.9 93 48-148 80-195 (450)
23 3ssr_B Carbon dioxide concentr 47.8 20 0.00068 26.4 3.9 45 103-148 21-65 (110)
24 1ka5_A Phosphocarrier protein 47.7 32 0.0011 23.5 4.8 67 83-152 1-86 (88)
25 3ssq_A Carbon dioxide concentr 47.5 27 0.00094 26.2 4.7 46 102-148 40-85 (122)
26 2jsx_A Protein NAPD; TAT, proo 47.1 68 0.0023 22.4 6.5 48 95-145 17-65 (95)
27 3ngk_A Propanediol utilization 47.0 25 0.00084 25.6 4.2 45 103-148 30-74 (102)
28 4axj_A EUTM, ethanolamine carb 46.7 30 0.001 25.2 4.7 45 103-148 24-68 (104)
29 2r6h_A NADH:ubiquinone oxidore 46.7 24 0.00082 27.3 4.4 57 50-113 160-218 (290)
30 3mpy_A Ethanolamine utilizatio 46.0 32 0.0011 25.0 4.7 45 103-148 20-64 (103)
31 2f06_A Conserved hypothetical 44.0 49 0.0017 23.3 5.4 49 92-145 81-130 (144)
32 2ewh_A Major carboxysome shell 43.4 40 0.0014 24.1 4.8 47 102-149 24-70 (98)
33 1twf_K B13.6, DNA-directed RNA 43.3 95 0.0033 22.7 7.1 63 86-148 31-99 (120)
34 3mwb_A Prephenate dehydratase; 42.3 39 0.0013 28.5 5.4 59 88-147 251-310 (313)
35 2w7v_A General secretion pathw 41.5 31 0.001 24.7 3.9 13 61-73 10-22 (95)
36 1vgj_A Hypothetical protein PH 41.5 53 0.0018 23.6 5.4 56 90-147 7-65 (184)
37 2opv_A KHSRP protein; KH domai 38.4 33 0.0011 22.8 3.6 23 125-148 62-84 (85)
38 2qsx_A Putative transcriptiona 37.9 15 0.00052 26.4 1.9 22 92-113 29-50 (218)
39 3h0g_K DNA-directed RNA polyme 37.9 82 0.0028 23.3 6.0 62 86-147 30-97 (123)
40 4a7p_A UDP-glucose dehydrogena 37.3 97 0.0033 26.9 7.2 76 61-144 108-194 (446)
41 2wvf_A Hpnikr, putative nickel 36.7 1.3E+02 0.0045 22.4 8.4 54 91-145 73-129 (148)
42 4axi_A EUTS, ethanolamine carb 36.6 61 0.0021 24.3 5.1 45 101-149 61-105 (125)
43 1cqx_A Flavohemoprotein; globi 36.0 58 0.002 26.7 5.3 81 21-113 237-326 (403)
44 2eix_A NADH-cytochrome B5 redu 35.6 45 0.0015 25.0 4.3 87 20-113 87-178 (243)
45 4hhu_A OR280; engineered prote 35.5 58 0.002 25.3 4.9 54 91-146 49-107 (170)
46 1qfj_A Protein (flavin reducta 34.6 1.1E+02 0.0038 22.6 6.4 56 50-113 106-163 (232)
47 3hxa_A Pterin-4-alpha-carbinol 34.2 48 0.0016 23.5 4.0 74 53-133 1-82 (104)
48 3le1_A Phosphotransferase syst 33.0 41 0.0014 23.0 3.4 67 83-154 1-87 (88)
49 3iwt_A 178AA long hypothetical 31.5 35 0.0012 25.3 3.0 22 50-73 147-170 (178)
50 2bj7_A Nickel responsive regul 31.2 1.5E+02 0.0052 21.5 9.5 53 92-145 64-119 (138)
51 3hvw_A Diguanylate-cyclase (DG 30.9 1.4E+02 0.0048 21.0 6.6 84 58-149 8-106 (176)
52 1kkl_H Phosphocarrier protein 30.8 44 0.0015 23.7 3.3 70 82-154 12-100 (100)
53 1tvc_A Methane monooxygenase c 30.6 1.4E+02 0.0048 22.4 6.4 56 50-113 121-178 (250)
54 1pch_A Phosphocarrier protein; 30.2 45 0.0015 22.9 3.2 65 85-152 2-85 (88)
55 2ys2_A Cytoplasmic tyrosine-pr 29.3 14 0.00049 23.8 0.5 17 21-37 23-42 (50)
56 3szp_A Transcriptional regulat 29.0 1.2E+02 0.0042 21.9 5.6 23 92-114 101-123 (291)
57 1x4m_A FAR upstream element bi 28.1 38 0.0013 23.0 2.5 24 125-149 63-86 (94)
58 3jtz_A Integrase; four strande 27.4 50 0.0017 22.6 3.1 30 109-150 49-78 (88)
59 2hh2_A KH-type splicing regula 27.1 55 0.0019 22.8 3.3 52 98-150 26-80 (107)
60 2e6i_A Tyrosine-protein kinase 27.0 23 0.00077 24.0 1.2 18 21-38 23-43 (64)
61 3hva_A Protein FIMX; ggdef dig 26.3 1.4E+02 0.0047 20.6 5.3 31 121-151 93-123 (177)
62 3ccd_A Phosphocarrier protein 25.6 1.5E+02 0.0053 19.8 5.9 64 83-149 1-83 (85)
63 3iuu_A MLRC-like, putative met 25.6 2.2E+02 0.0076 25.5 7.7 84 64-153 173-275 (495)
64 3del_B Arginine binding protei 25.0 80 0.0027 22.4 3.9 54 101-155 169-226 (242)
65 2g2c_A Putative molybdenum cof 25.0 47 0.0016 24.7 2.7 24 49-74 135-159 (167)
66 2ql3_A Probable transcriptiona 24.5 59 0.002 22.4 3.0 58 48-117 5-63 (209)
67 2o3j_A UDP-glucose 6-dehydroge 24.5 2.5E+02 0.0085 24.1 7.6 81 61-147 114-206 (481)
68 3i6v_A Periplasmic His/Glu/Gln 23.6 1.2E+02 0.0041 21.8 4.7 47 109-155 165-211 (232)
69 2pa8_L DNA-directed RNA polyme 23.6 1.9E+02 0.0063 20.0 7.7 62 87-148 14-81 (92)
70 3mgj_A Uncharacterized protein 23.1 1.9E+02 0.0066 21.5 5.8 63 84-146 2-71 (118)
71 2is8_A Molybdopterin biosynthe 23.0 57 0.002 24.1 2.9 24 49-74 124-148 (164)
72 1ptf_A Histidine-containing ph 22.9 74 0.0025 21.6 3.2 68 83-153 1-87 (88)
73 3qax_A Probable ABC transporte 22.5 93 0.0032 22.3 3.9 55 101-155 190-247 (268)
74 2wh6_B BCL-2-like protein 11; 22.4 24 0.00083 20.2 0.5 18 93-110 4-21 (26)
75 3ffy_A Putative tetrapyrrole ( 22.3 1.2E+02 0.0041 21.3 4.3 69 50-132 46-114 (115)
76 1k1g_A SF1-BO isoform; splicin 22.3 1.1E+02 0.0039 22.4 4.4 28 122-149 72-99 (131)
77 1mv8_A GMD, GDP-mannose 6-dehy 22.0 1.5E+02 0.0052 24.8 5.6 80 61-147 99-194 (436)
78 3ggo_A Prephenate dehydrogenas 21.9 2E+02 0.0069 23.1 6.2 81 49-144 96-194 (314)
79 1ixc_A CBNR, LYSR-type regulat 21.9 1.8E+02 0.0061 21.3 5.4 21 93-113 102-122 (294)
80 1gvh_A Flavohemoprotein; oxido 21.8 1.6E+02 0.0054 24.0 5.5 83 20-113 229-320 (396)
81 2jzx_A Poly(RC)-binding protei 21.6 77 0.0026 22.7 3.3 50 99-149 109-159 (160)
82 1ru0_A DCOH-like protein dcohm 21.2 1E+02 0.0036 21.7 3.8 71 58-134 7-85 (105)
83 4i62_A Amino acid ABC transpor 21.2 1E+02 0.0034 22.1 3.8 53 103-155 204-258 (269)
84 3fzv_A Probable transcriptiona 20.8 1.3E+02 0.0045 22.2 4.5 21 93-113 106-126 (306)
85 3ju0_A Phage integrase; four s 20.8 64 0.0022 23.0 2.6 10 109-118 49-58 (108)
86 2hza_A Nickel-responsive regul 20.8 2.4E+02 0.0083 20.3 10.0 53 92-145 62-117 (133)
87 3d3c_J 30S ribosomal protein S 20.7 1.1E+02 0.0038 21.2 3.8 26 123-148 10-35 (87)
88 1szw_A TRNA pseudouridine synt 20.2 1.3E+02 0.0045 26.0 4.9 66 77-145 100-175 (379)
89 3hhg_A Transcriptional regulat 20.0 1.7E+02 0.0058 21.5 5.0 20 94-113 105-124 (306)
No 1
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=98.37 E-value=2.9e-07 Score=72.67 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=38.1
Q ss_pred CCCCce-eeCCCcccceeEeC----eEEEecCCCCchH-HHHHHHHHHhHH
Q 031642 29 VPPNCC-ITTSCSYLWYIKCQ----NVIILTATNVTEL-DKEWNCLIELLR 73 (156)
Q Consensus 29 ~~~~~~-I~NpvS~APGF~ig----NV~VMAGV~VP~I-~aMl~~l~p~L~ 73 (156)
+|.++- |+||+..||||+++ |||+|+| ||+. +.||+.+.|+|.
T Consensus 121 ~P~ga~~l~N~~g~apG~~~~~~~~~v~~lPG--vP~e~~~m~~~~~~~~~ 169 (172)
T 3kbq_A 121 IPPSCRPIENPVGTAPGLICAVGGKKVIILPG--VPKEMEALLKAMEKDII 169 (172)
T ss_dssp ECTTEEEECCSSSSSCEEEEEETTEEEEEECS--SHHHHHHHHHHTHHHHC
T ss_pred CCCCCEECcCCCCcCCeEEEEECCeEEEEeCC--CHHHHHHHHHHHHhhcC
Confidence 577765 79999999999998 8999999 7997 789999999873
No 2
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=88.65 E-value=0.89 Score=32.44 Aligned_cols=46 Identities=26% Similarity=0.446 Sum_probs=38.5
Q ss_pred hhhHHHHHHhCCCceeeccccccCCCeEEEEEecCHHHHHHHHHHHHhhhc
Q 031642 98 AQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 148 (156)
Q Consensus 98 A~~L~~Iq~~~Pdv~IGSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~~~~ 148 (156)
.+-+.+|..+|+++.|- +|. +.=.|+++|. .+.+++|.+.|.+++.
T Consensus 46 G~~Ik~i~~~~~~v~I~-fp~---~~~~ItI~G~-~~~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 46 GQNLAKITQQMPKVHIE-FTE---GEDKITLEGP-TEDVSVAQEQIEGMVK 91 (102)
T ss_dssp TCHHHHHHHHCSSSEEE-ECS---SSCEEEEEEC-HHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHcCCcEEE-eCC---CCCEEEEECC-HHHHHHHHHHHHHHHH
Confidence 45689999999999994 664 2337999999 9999999999998875
No 3
>3cim_A Carbon dioxide-concentrating mechanism protein CC 2; hexamer, structural protein; 1.30A {Synechocystis SP} PDB: 3dnc_A 3dn9_A
Probab=82.47 E-value=1.6 Score=31.56 Aligned_cols=46 Identities=15% Similarity=0.289 Sum_probs=38.7
Q ss_pred HHHHhCCCceeeccccccCCCeEEEEEecCHHHHHHHHHHHHhhhcc
Q 031642 103 KLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR 149 (156)
Q Consensus 103 ~Iq~~~Pdv~IGSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~~~~~ 149 (156)
+...+--+|++..|-...+|.+.+.++| |...+++|+++..+...+
T Consensus 21 D~a~KAA~V~lv~~~~~~~G~~~vii~G-dVsaV~~Av~ag~~~~~~ 66 (99)
T 3cim_A 21 DSMVKAARVTLVGYEKIGSGRVTVIVRG-DVSEVQASVSAGIEAANR 66 (99)
T ss_dssp HHHHHHSSEEEEEEEEEETTEEEEEEEE-CHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhCCcEEEEEEecCCcEEEEEEEE-cHHHHHHHHHHHHHHHhh
Confidence 4555667899999998777778899999 999999999998887764
No 4
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=77.76 E-value=2.6 Score=29.65 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=37.3
Q ss_pred hhhHHHHHHhCCCceeeccccccCCCeEEEEEecCHHHHHHHHHHHHhhhcc
Q 031642 98 AQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR 149 (156)
Q Consensus 98 A~~L~~Iq~~~Pdv~IGSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~~~~~ 149 (156)
..-+.+|+++++++.| ..|....+.-.+.++|.+. .+++|.+.+.+++.+
T Consensus 36 Gk~Ir~I~eetggv~I-~i~~~g~~~~~V~I~G~~~-~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 36 GRLIRSIMEECGGVHI-HFPVEGSGSDTVVIRGPSS-DVEKAKKQLLHLAEE 85 (95)
T ss_dssp SHHHHHHHHHHTSCEE-ECCCTTTTCCEEEEESCHH-HHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHcCCCEE-EeCCCCCCcceEEEEcCHH-HHHHHHHHHHHHHhh
Confidence 3568899999988887 3443211223699999988 999999999988753
No 5
>2a1b_A CCMK2, carbon dioxide concentrating mechanism protein CC 2; cyclic hexamer, C6 point symmetry, carboxysome; 2.90A {Synechocystis SP} SCOP: d.58.56.1
Probab=75.66 E-value=3.9 Score=30.45 Aligned_cols=46 Identities=15% Similarity=0.279 Sum_probs=38.3
Q ss_pred HHHHhCCCceeeccccccCCCeEEEEEecCHHHHHHHHHHHHhhhcc
Q 031642 103 KLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR 149 (156)
Q Consensus 103 ~Iq~~~Pdv~IGSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~~~~~ 149 (156)
+.+.+--+|++..|-....|.+.+.++| |...+++|+++..+...+
T Consensus 21 D~avKAAnVelv~~~~~~~G~~~vii~G-DVsaV~aAveag~~~~~~ 66 (116)
T 2a1b_A 21 DSMVKAARVTLVGYEKIGSGRVTVIVRG-DVSGVQASVSAGIEAANR 66 (116)
T ss_dssp HHHHHHSSCEEEEEEECSSSEEEEEEES-CHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhCCcEEEEEEecCCcEEEEEEEE-cHHHHHHHHHHHHHHHhh
Confidence 4555667899999998766667899999 999999999998887764
No 6
>2a10_A CCMK4, carbon dioxide concentrating mechanism protein CC 4; cyclic hexamer, C6 point symmetry, carboxysome; 1.80A {Synechocystis SP} SCOP: d.58.56.1 PDB: 2a18_A
Probab=75.27 E-value=4.5 Score=30.53 Aligned_cols=46 Identities=11% Similarity=0.247 Sum_probs=38.6
Q ss_pred HHHHHhCCCceeeccccccCCCeEEEEEecCHHHHHHHHHHHHhhhc
Q 031642 102 SKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 148 (156)
Q Consensus 102 ~~Iq~~~Pdv~IGSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~~~~ 148 (156)
.+.+.+--+|++..|-....|.+.+.++| |...+++|+++..+...
T Consensus 22 ADaavKAAnVelv~~e~~~~G~~~vii~G-DVsaV~aAveag~~~~~ 67 (125)
T 2a10_A 22 ADAMVKAGRITIVGYIRAGSARFTLNIRG-DVQEVKTAMAAGIDAIN 67 (125)
T ss_dssp HHHHHHHSSCEEEEEEEEETTEEEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCcEEEEEEecCCCEEEEEEEE-cHHHHHHHHHHHHHHHh
Confidence 34556667999999998777778899999 99999999999887765
No 7
>1y51_A Phosphocarrier protein HPR; bacillus stearothermophilus HPR F29W mutant, transport protein; 1.65A {Geobacillus stearothermophilus} PDB: 1y50_A 1y4y_A 2nzu_L* 1rzr_T* 2nzv_L* 2oen_L* 2fep_S* 3oqm_S* 3oqn_S* 3oqo_S*
Probab=63.94 E-value=17 Score=24.90 Aligned_cols=69 Identities=17% Similarity=0.273 Sum_probs=41.2
Q ss_pred eEEEEEEecCCch---hhhhhHHHHHHhCC-Cceeec--cccccC------------C-CeEEEEEecCHHHHHHHHHHH
Q 031642 83 YTSKSLTTNLSDL---EAAQPLSKLCLEFP-DLHIGC--YRKSRQ------------G-PLIISFEGKDQARIEAAIESL 143 (156)
Q Consensus 83 ~~S~tv~~~~~Eg---~IA~~L~~Iq~~~P-dv~IGS--YP~~~~------------g-~~~lVvRG~D~~~l~aA~~~l 143 (156)
|.++++....+.| .-|..|-+++++|+ ++.|-+ +.-.-. | .+.|.+.|.|++ +|.++|
T Consensus 1 M~~~~v~i~~~~GlHARpAa~~v~~a~~f~s~I~i~~~~~~vdaKSim~lm~L~~~~g~~i~i~~~G~De~---~A~~~l 77 (88)
T 1y51_A 1 MAEKTFKVVSDSGIHARPATILVQTASKWNSEIQLEYNGKTVNLKSIMGVMSLGIPKGATIKITAEGADAA---EAMAAL 77 (88)
T ss_dssp -CEEEEEBCCTTCSCHHHHHHHHHHHHTSSSEEEEEETTEEEETTCHHHHHHTCCCTTCEEEEEEESTTHH---HHHHHH
T ss_pred CcEEEEEEcCCCCccHHHHHHHHHHHhhCCCeEEEEECCEEEehHhHHHHHhcCCCCCCEEEEEEeCCCHH---HHHHHH
Confidence 4577888887777 45666888888884 555532 221000 1 135778999975 456666
Q ss_pred HhhhccCCccc
Q 031642 144 FKKFHRGAFSE 154 (156)
Q Consensus 144 ~~~~~~~~f~~ 154 (156)
.+++...-|-|
T Consensus 78 ~~l~~~~~f~e 88 (88)
T 1y51_A 78 TDTLAKEGLAE 88 (88)
T ss_dssp HHHHHHTTCBC
T ss_pred HHHHHhcCCCC
Confidence 66665334543
No 8
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=63.18 E-value=11 Score=26.62 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=44.4
Q ss_pred eEEEEEE-ecCCchh------hhhhHHHHHHhCCCcee------ecccccc----CCC-eEEEEEecCHHHHHHHHHHHH
Q 031642 83 YTSKSLT-TNLSDLE------AAQPLSKLCLEFPDLHI------GCYRKSR----QGP-LIISFEGKDQARIEAAIESLF 144 (156)
Q Consensus 83 ~~S~tv~-~~~~Eg~------IA~~L~~Iq~~~Pdv~I------GSYP~~~----~g~-~~lVvRG~D~~~l~aA~~~l~ 144 (156)
+..-++. ++.+++. |..-|-+++.++|++.| |+-|+-. +|. -.+.+++.+.++|...++.|.
T Consensus 19 lk~l~~~yc~~~~sS~G~R~Fl~~~l~~~k~~NP~v~i~v~~~~~~~P~i~a~Y~~G~ek~i~l~n~s~~eI~~~l~~l~ 98 (102)
T 1s3a_A 19 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENVL 98 (102)
T ss_dssp EEEEEEECCSSSCCCHHHHHHHHHTHHHHHHHSTTCCEEEECCCSSSCEEEEEESSCCEEEEECTTCCHHHHHHHHHHHH
T ss_pred eeEEEEEEcCCCCCchhHHHHHHHhhHHHHHHCCCceEEEEECCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHH
Confidence 5555555 3444421 35678999999999876 5555422 333 359999999999999998886
Q ss_pred hh
Q 031642 145 KK 146 (156)
Q Consensus 145 ~~ 146 (156)
+.
T Consensus 99 ~~ 100 (102)
T 1s3a_A 99 SG 100 (102)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 9
>3ihs_A Phosphocarrier protein HPR; dimerization domain SWAP beta strand, IDP01131, structural genomics; HET: MSE; 1.15A {Bacillus anthracis} PDB: 1zvv_W* 1mo1_A 1mu4_A 2rlz_A 2ak7_A* 1k1c_A
Probab=61.46 E-value=24 Score=25.48 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=41.7
Q ss_pred CceEEEEEEecCCch---hhhhhHHHHHHhCC-Cceeecccccc-C--------------C-CeEEEEEecCHHHHHHHH
Q 031642 81 EPYTSKSLTTNLSDL---EAAQPLSKLCLEFP-DLHIGCYRKSR-Q--------------G-PLIISFEGKDQARIEAAI 140 (156)
Q Consensus 81 ap~~S~tv~~~~~Eg---~IA~~L~~Iq~~~P-dv~IGSYP~~~-~--------------g-~~~lVvRG~D~~~l~aA~ 140 (156)
.+|+++++....+.| .-|..|-+++++|+ ++.|-. -... + | .+.|.+.|.|+++.-++.
T Consensus 23 ~~M~~~~v~I~n~~GLHARPAa~~V~~A~~f~s~I~i~~-~~~~vdAKSil~lmsLg~~~G~~i~i~aeG~Dee~Al~aL 101 (106)
T 3ihs_A 23 NAMVQKRVQVSLKNGLQARPAALFVQEANRFHADIFIEK-DGKTVNAKSIMGIMSLAIGTGSMITITTEGSDAEEALEAL 101 (106)
T ss_dssp CCCEEEEEECCCTTCSCHHHHHHHHHHHHTSSSEEEEEE-TTEEEETTCHHHHHHTCCCTTCEEEEEEESTTHHHHHHHH
T ss_pred CceEEEEEEEeCCCCCcHHHHHHHHHHHhhCCCeEEEEE-CCEEEehHhHHHHHhcCCCCCCEEEEEEECcCHHHHHHHH
Confidence 569999999988888 67888999999996 677641 1111 1 1 235889999987644444
Q ss_pred H
Q 031642 141 E 141 (156)
Q Consensus 141 ~ 141 (156)
+
T Consensus 102 ~ 102 (106)
T 3ihs_A 102 A 102 (106)
T ss_dssp H
T ss_pred H
Confidence 3
No 10
>3cgi_A Propanediol utilization protein PDUU; circular permutation, beta barrel, bacterial microcompartmen propanediol, signaling protein; 1.80A {Salmonella typhimurium}
Probab=58.95 E-value=17 Score=27.25 Aligned_cols=87 Identities=10% Similarity=0.090 Sum_probs=53.0
Q ss_pred ceeEeCeEEEecCCCCchHHHHHHHHHHhHHhCCCccCCceEEEEEE-ecCCchhhhhhHHHHHHhCCCceeeccccccC
Q 031642 43 WYIKCQNVIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLT-TNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQ 121 (156)
Q Consensus 43 PGF~igNV~VMAGV~VP~I~aMl~~l~p~L~~G~L~~gap~~S~tv~-~~~~Eg~IA~~L~~Iq~~~Pdv~IGSYP~~~~ 121 (156)
||=++=--+|.+.+ =|.+..+|.. . .+..|-=+- +.-.++.| .-.+.+.+--+|.|..|- .
T Consensus 16 ~gkqv~~~~VIan~-~~~l~~~L~~----~--------~~~~AlGiie~~~~~~ai--~AAD~A~KAA~V~lv~~~---~ 77 (124)
T 3cgi_A 16 PGKQVTLAHLIANP-GKDLFKKLGL----Q--------DAVSAIGILTITPSEASI--IACDIATKSGAVEIGFLD---R 77 (124)
T ss_dssp CCCEEEEEEEESSC-CHHHHHHTTC----C--------BSCCEEEEEEEESTTHHH--HHHHHHHHSSSEEEEEEE---T
T ss_pred CCEEEEEeeeeCCC-CHHHHHHhCC----C--------CCCCeEEEEEecCHHHHH--HHHHHHHhhcCcEEEEEE---C
Confidence 56566666777774 3444333332 1 111122222 22233333 234566777889999987 4
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHhhhc
Q 031642 122 GPLIISFEGKDQARIEAAIESLFKKFH 148 (156)
Q Consensus 122 g~~~lVvRG~D~~~l~aA~~~l~~~~~ 148 (156)
|...+.++| |...+++|+++..+.+.
T Consensus 78 g~g~v~i~G-dvsaV~aAvea~~~~~~ 103 (124)
T 3cgi_A 78 FTGAVVLTG-DVSAVEYALKQVTRTLG 103 (124)
T ss_dssp TTTEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEE-CHHHHHHHHHHHHHHHH
Confidence 445789999 99999999999877664
No 11
>3bn4_A Carbon dioxide-concentrating mechanism protein CC 1; hexamer, structural protein; 2.00A {Synechocystis SP}
Probab=58.75 E-value=18 Score=27.13 Aligned_cols=47 Identities=15% Similarity=0.316 Sum_probs=37.5
Q ss_pred HHHHHhCCCceeeccccccCCCeEEEEEecCHHHHHHHHHHHHhhhcc
Q 031642 102 SKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR 149 (156)
Q Consensus 102 ~~Iq~~~Pdv~IGSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~~~~~ 149 (156)
.+...+--+|++..|-...+|.+.++++| |...+++|+++..+...+
T Consensus 20 ADam~KAA~V~Lv~~~~~~~G~~~vii~G-DVsAV~aAv~ag~~~a~~ 66 (122)
T 3bn4_A 20 ADSMVKAARVTLVGYEKIGSGRVTVIVRG-DVSEVQASVTAGIENIRR 66 (122)
T ss_dssp HHHHHHHSSCEEEEEEEEETTEEEEEEEE-CHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhhCCcEEEEEEccCCcEEEEEEEE-cHHHHHHHHHHHHHHHhh
Confidence 34556667999999998877767788888 788899999998887765
No 12
>3v42_A Folliculin; tumor suppressor, protein binding; 2.00A {Homo sapiens}
Probab=58.73 E-value=8.4 Score=31.57 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=25.9
Q ss_pred CeEEEEEecCHHHHHHHHHHHHhhhccC
Q 031642 123 PLIISFEGKDQARIEAAIESLFKKFHRG 150 (156)
Q Consensus 123 ~~~lVvRG~D~~~l~aA~~~l~~~~~~~ 150 (156)
|..|++||.|...+.+++..|..++++|
T Consensus 31 GnQiIVrg~~~~~~~s~~~~L~~lLP~~ 58 (226)
T 3v42_A 31 GNQVIWKSRDVDLVQSAFEVLRTMLPVG 58 (226)
T ss_dssp TCEEEEECSCHHHHHHHHHHHGGGSCGG
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHhCCHH
Confidence 5679999999999999999999999876
No 13
>3n79_A PDUT; FES cluster, BMC shell protein, carboxysome, electron T; 1.50A {Salmonella enterica subsp} PDB: 3vcd_A 4ddf_A 3pac_A
Probab=56.20 E-value=21 Score=28.21 Aligned_cols=48 Identities=8% Similarity=0.072 Sum_probs=37.8
Q ss_pred HHHHHHhCCCceeeccccccC-CC-eEEEEEecCHHHHHHHHHHHHhhhcc
Q 031642 101 LSKLCLEFPDLHIGCYRKSRQ-GP-LIISFEGKDQARIEAAIESLFKKFHR 149 (156)
Q Consensus 101 L~~Iq~~~Pdv~IGSYP~~~~-g~-~~lVvRG~D~~~l~aA~~~l~~~~~~ 149 (156)
-.+.+.+--+|++.+|-..++ ++ ..++++| |...+++|.++..+...+
T Consensus 111 AaD~a~KAA~V~lv~~~~~~g~~g~~~~~i~G-dvsaV~~Av~a~~~~~~~ 160 (192)
T 3n79_A 111 AADRAVKGSNVTLVRVHMAFGIGGKCYMVVAG-DVSDVNNAVTVASESAGE 160 (192)
T ss_dssp HHHHHHHTSSCEEEEEEESSSTTSEEEEEEEE-CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHCCcEEEEEEeccccCCEEEEEEEE-CHHHHHHHHHHHHHHHHh
Confidence 345667778899999986543 34 5689999 999999999998887754
No 14
>3n79_A PDUT; FES cluster, BMC shell protein, carboxysome, electron T; 1.50A {Salmonella enterica subsp} PDB: 3vcd_A 4ddf_A 3pac_A
Probab=54.87 E-value=19 Score=28.44 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=35.8
Q ss_pred HHhCCCceeeccccccCCCeEEEEEecCHHHHHHHHHHHHhhhcc
Q 031642 105 CLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR 149 (156)
Q Consensus 105 q~~~Pdv~IGSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~~~~~ 149 (156)
..+-.||++..|-.+.+|.+.+.++| |.+.+++|.++..+...+
T Consensus 23 a~Kaa~V~l~~~~~~~~G~~~~ii~G-dv~aV~~Av~a~~~~~~~ 66 (192)
T 3n79_A 23 MLKSANVDLLVSKTISPGKFLLMLGG-DIGAIQQAIETGTSQAGE 66 (192)
T ss_dssp HHHHSSCEEEEEEEETTTEEEEEEEE-CHHHHHHHHHHHHHHHGG
T ss_pred HhccCCcEEEEEEeecCceEEEEEEc-cHHHHHHHHHHHHHHhhc
Confidence 33347999999887766667899999 999999999998887654
No 15
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=54.76 E-value=33 Score=24.94 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=39.3
Q ss_pred cCCchhhhhhHHHHHHhCC-CceeeccccccCCCe---EEEEEecCHHHHHHHHHHHHh
Q 031642 91 NLSDLEAAQPLSKLCLEFP-DLHIGCYRKSRQGPL---IISFEGKDQARIEAAIESLFK 145 (156)
Q Consensus 91 ~~~Eg~IA~~L~~Iq~~~P-dv~IGSYP~~~~g~~---~lVvRG~D~~~l~aA~~~l~~ 145 (156)
...|.-.++.++-+++..| |.++ +-..++.|.+ .|.++-++.+++++.-++|.+
T Consensus 44 ~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~ 101 (109)
T 1rwu_A 44 QALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINATHIEQVETLYEELGK 101 (109)
T ss_dssp ECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSC
T ss_pred ECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhc
Confidence 3455566666777777778 7777 3344556765 599999999999998877754
No 16
>3i96_A Ethanolamine utilization protein EUTS; structural protein; HET: NHE; 1.65A {Escherichia coli} PDB: 3ia0_A
Probab=53.54 E-value=18 Score=27.03 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=38.8
Q ss_pred cCCchhhhhhHHHHHHhCCCceeeccccccCCCeEEEEEecCHHHHHHHHHHHHhhhcc
Q 031642 91 NLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR 149 (156)
Q Consensus 91 ~~~Eg~IA~~L~~Iq~~~Pdv~IGSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~~~~~ 149 (156)
.-.+..|.+ .+.+.+--||+|+.|-.+. + .+.++| |...+++|+++..+.+.+
T Consensus 47 ~~~~~~I~A--AD~a~KAA~Vel~~~~~~~--G-~vii~G-dVsaV~aAvea~~~~~~~ 99 (119)
T 3i96_A 47 TPGETAMIA--GDLALKAADVHIGFLDRFS--G-ALVIYG-SVGAVEEALSQTVSGLGR 99 (119)
T ss_dssp ESTTHHHHH--HHHHHHHSSEEEEEECTTT--C-EEEEEE-CHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHH--HHHHhhhcCcEEEEEEecc--c-EEEEEE-CHHHHHHHHHHHHHHHhh
Confidence 334544443 3455666799999987653 3 789999 999999999999887753
No 17
>1sph_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 2.00A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1jem_A* 2hid_A 2hpr_A
Probab=53.30 E-value=30 Score=23.62 Aligned_cols=69 Identities=17% Similarity=0.274 Sum_probs=39.6
Q ss_pred eEEEEEEecCCch---hhhhhHHHHHHhCC-Cceee--ccccccC------------C-CeEEEEEecCHHHHHHHHHHH
Q 031642 83 YTSKSLTTNLSDL---EAAQPLSKLCLEFP-DLHIG--CYRKSRQ------------G-PLIISFEGKDQARIEAAIESL 143 (156)
Q Consensus 83 ~~S~tv~~~~~Eg---~IA~~L~~Iq~~~P-dv~IG--SYP~~~~------------g-~~~lVvRG~D~~~l~aA~~~l 143 (156)
|.++++....+.| .-|..|-+++++|+ ++.|- .+.-.-. | .+.|.+.|.|+++ |.++|
T Consensus 1 M~~~~v~i~~~~GLHARpAa~~v~~a~~f~s~I~i~~~~~~vnaKSim~lm~L~~~~g~~i~i~~~G~De~~---A~~~l 77 (88)
T 1sph_A 1 MAQKTFKVTADSGIHARPATVLVQTASKYDADVNLEYNGKTVNLKDIMGVMSLGIAKGAEITISASGADEND---ALNAL 77 (88)
T ss_dssp -CEEEEEBCCTTCSCHHHHHHHHHHHTTSSSEEEEEETTEEEETTCHHHHHHHCCCTTCEEEEEEESTTHHH---HHHHH
T ss_pred CcEEEEEEcCCCCccHHHHHHHHHHHhhCCCeEEEEECCEEEehHhHHHHHhcCCCCCCEEEEEEeCCCHHH---HHHHH
Confidence 4577788777777 34566777778884 55553 2221000 1 2358899999764 55555
Q ss_pred HhhhccCCccc
Q 031642 144 FKKFHRGAFSE 154 (156)
Q Consensus 144 ~~~~~~~~f~~ 154 (156)
.+++...-|-|
T Consensus 78 ~~l~~~~~~ge 88 (88)
T 1sph_A 78 EETMKSEGLGE 88 (88)
T ss_dssp HHHHHHTTSBC
T ss_pred HHHHHHcCCCC
Confidence 55555333543
No 18
>3nwg_A Microcompartments protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.70A {Desulfitobacterium hafniense}
Probab=51.62 E-value=26 Score=27.43 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=35.2
Q ss_pred HHHhCCCceeeccccccCCCeEEEEEecCHHHHHHHHHHHHhhhc
Q 031642 104 LCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 148 (156)
Q Consensus 104 Iq~~~Pdv~IGSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~~~~ 148 (156)
...+-.+|++..|-...+|.+.+.++| |...+++|.++..+...
T Consensus 22 ~a~Kaa~V~l~~~~~~~~G~~~vii~G-dv~aV~~Av~a~~~~~~ 65 (182)
T 3nwg_A 22 AMLKAAQVDLLEAKPVCPGKYIVLICG-DVAAVQSSVTAGKTMAA 65 (182)
T ss_dssp HHHHHSSEEEEEEEECSTTCEEEEEEE-CHHHHHHHHHHHHHHHG
T ss_pred HHhccCCeEEEEEEeccCcEEEEEEEe-cHHHHHHHHHHHHHhcc
Confidence 334447999999976656777899999 99999999998877764
No 19
>1q5y_A NIKR, nickel responsive regulator; nickel binding, regulatory domain, beta sandwich, metal binding protein; 1.40A {Escherichia coli} SCOP: d.58.18.4 PDB: 3bkt_A 3bkf_A 3bku_A
Probab=51.45 E-value=54 Score=22.23 Aligned_cols=54 Identities=9% Similarity=0.110 Sum_probs=40.2
Q ss_pred CCchhhhhhHHHHHHhCCCceeeccccccCCCe---EEEEEecCHHHHHHHHHHHHhh
Q 031642 92 LSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPL---IISFEGKDQARIEAAIESLFKK 146 (156)
Q Consensus 92 ~~Eg~IA~~L~~Iq~~~Pdv~IGSYP~~~~g~~---~lVvRG~D~~~l~aA~~~l~~~ 146 (156)
-...++++.|.+||.+|-|+-+++==..-+... .+++||. .+++.+-..+|.+.
T Consensus 14 h~~~~l~~~l~~iqh~~~d~I~s~~Hvhld~~~clEvivv~G~-~~~I~~l~~~l~~~ 70 (85)
T 1q5y_A 14 HEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGD-MGDVQHFADDVIAQ 70 (85)
T ss_dssp TTCHHHHHHHHHHHHHTGGGEEEEEEEECSSSEEEEEEEEEEE-HHHHHHHHHHHHTS
T ss_pred CCchhHHHHHHHHHHhccCeEEEEEeeeeCCCcEEEEEEEEcC-HHHHHHHHHHHhcc
Confidence 344778999999999999999998554433432 4999995 55677777777665
No 20
>3nwg_A Microcompartments protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.70A {Desulfitobacterium hafniense}
Probab=49.02 E-value=35 Score=26.64 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=35.8
Q ss_pred HHHHHhCCCceeeccccccC--CCeEEEEEecCHHHHHHHHHHHHhhhc
Q 031642 102 SKLCLEFPDLHIGCYRKSRQ--GPLIISFEGKDQARIEAAIESLFKKFH 148 (156)
Q Consensus 102 ~~Iq~~~Pdv~IGSYP~~~~--g~~~lVvRG~D~~~l~aA~~~l~~~~~ 148 (156)
.+.+.+--+|++..|....+ |...++++| |...+++|.++..+...
T Consensus 112 aD~a~KaA~V~l~~~~~~~g~~g~~~v~i~G-dvsaV~~Av~a~~~~~~ 159 (182)
T 3nwg_A 112 ADTAAKTGQVDLVEIRIGMGIGGKSFVTLTG-DVASVESSVAAGVMLAS 159 (182)
T ss_dssp HHHHHHSSSCEEEEEECCTTTTTCEEEEEEE-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCeEEEEEEeccCcCcEEEEEEEE-cHHHHHHHHHHHHHHHh
Confidence 45677788999999953332 335799999 99999999999888764
No 21
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=48.04 E-value=20 Score=26.75 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=23.8
Q ss_pred ccceeEeCe--EEEecCCCCchH-HHHHHHHHHhHHh
Q 031642 41 YLWYIKCQN--VIILTATNVTEL-DKEWNCLIELLRS 74 (156)
Q Consensus 41 ~APGF~igN--V~VMAGV~VP~I-~aMl~~l~p~L~~ 74 (156)
.++|+ ++| ||.|+| .|.= ..||+.++|.|+.
T Consensus 124 ~~~G~-~~~~~v~~LPG--~P~s~~~~~~~~~P~L~~ 157 (167)
T 1uuy_A 124 SAAGI-RGSTLIINMPG--NPNAVAECMEALLPALKH 157 (167)
T ss_dssp CCEEE-ETTEEEEEECS--STTHHHHHHHHHHHHHHH
T ss_pred eeEEE-ECCEEEEECCC--CHHHHHHHHHHHHHHHHH
Confidence 36787 466 899999 6885 7789988888753
No 22
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=47.90 E-value=48 Score=28.58 Aligned_cols=93 Identities=9% Similarity=-0.048 Sum_probs=55.8
Q ss_pred CeEEEecCCCCc----------hHHHHHHHHHHhHHhCCCccCCceEEEEEEecCCc-hhhhhhHHHHHHhC---CCcee
Q 031642 48 QNVIILTATNVT----------ELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSD-LEAAQPLSKLCLEF---PDLHI 113 (156)
Q Consensus 48 gNV~VMAGV~VP----------~I~aMl~~l~p~L~~G~L~~gap~~S~tv~~~~~E-g~IA~~L~~Iq~~~---Pdv~I 113 (156)
+=|+++-+ -| .+.+.++.+.+.|+.| +-++..| .+..+- -++++.+.+..... -|..+
T Consensus 80 DvViiaVp--tp~~~~~~~dl~~v~~v~~~i~~~l~~g-----~iVV~~S-Tv~pgt~~~l~~~l~~~~~~~~~~~d~~v 151 (450)
T 3gg2_A 80 DIIFIAVG--TPAGEDGSADMSYVLDAARSIGRAMSRY-----ILIVTKS-TVPVGSYRLIRKAIQEELDKREVLIDFDI 151 (450)
T ss_dssp SEEEECCC--CCBCTTSSBCCHHHHHHHHHHHHHCCSC-----EEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred CEEEEEcC--CCcccCCCcChHHHHHHHHHHHhhCCCC-----CEEEEee-eCCCcchHHHHHHHHHhccccCcCcceeE
Confidence 44666666 36 5677788888886555 7777666 222211 13555555533332 57888
Q ss_pred ecccccc-CCCe--------EEEEEecCHHHHHHHHHHHHhhhc
Q 031642 114 GCYRKSR-QGPL--------IISFEGKDQARIEAAIESLFKKFH 148 (156)
Q Consensus 114 GSYP~~~-~g~~--------~lVvRG~D~~~l~aA~~~l~~~~~ 148 (156)
++=|.+- +|.. .|++=|.|++..+.+..-+..++.
T Consensus 152 ~~~Pe~a~eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~ 195 (450)
T 3gg2_A 152 ASNPEFLKEGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLL 195 (450)
T ss_dssp EECCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCC
T ss_pred EechhhhcccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 8889766 4432 477777787766665554444443
No 23
>3ssr_B Carbon dioxide concentrating mechanism protein; bacterial microcompartment fold, shell forming, pore forming structural protein; 1.60A {Thermosynechococcus elongatus} PDB: 3sss_A
Probab=47.82 E-value=20 Score=26.44 Aligned_cols=45 Identities=13% Similarity=0.254 Sum_probs=35.0
Q ss_pred HHHHhCCCceeeccccccCCCeEEEEEecCHHHHHHHHHHHHhhhc
Q 031642 103 KLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 148 (156)
Q Consensus 103 ~Iq~~~Pdv~IGSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~~~~ 148 (156)
+...+--+|+|..|-...+|.+.++++| |-..+++|+++-.+...
T Consensus 21 Dam~KAA~V~lv~~~~~~~G~~~v~i~G-DVsaV~aAv~ag~~aa~ 65 (110)
T 3ssr_B 21 DAMVKAARVTLVGYEKIGSGRVTVIVRG-DVSEVQASVAAGVDSAK 65 (110)
T ss_dssp HHHHHHSSEEEEEEEEEETTEEEEEEEE-EHHHHHHHHHHHHHHHH
T ss_pred HHHhhhCCcEEEEEEecCCCEEEEEEEE-cHHHHHHHHHHHHHHHH
Confidence 4555667999999988877777788887 78888888888777654
No 24
>1ka5_A Phosphocarrier protein HPR; open faced beta-sandwich, structural proteomics in europe, spine, structural genomics, ligand transport; NMR {Staphylococcus aureus} SCOP: d.94.1.1 PDB: 1qr5_A 1txe_A
Probab=47.74 E-value=32 Score=23.48 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=39.1
Q ss_pred eEEEEEEecCCch---hhhhhHHHHHHhC-CCceee--ccccccC------------C-CeEEEEEecCHHHHHHHHHHH
Q 031642 83 YTSKSLTTNLSDL---EAAQPLSKLCLEF-PDLHIG--CYRKSRQ------------G-PLIISFEGKDQARIEAAIESL 143 (156)
Q Consensus 83 ~~S~tv~~~~~Eg---~IA~~L~~Iq~~~-Pdv~IG--SYP~~~~------------g-~~~lVvRG~D~~~l~aA~~~l 143 (156)
|.++++....+.| .-|..|-+++++| -++.|- .+.-.-. | .+.|.+.|.|+++ |.++|
T Consensus 1 M~~~~v~i~~~~GLHARpAa~~v~~a~~f~s~I~i~~~~~~vnaKSim~lm~Lg~~~G~~i~i~a~G~De~~---A~~~l 77 (88)
T 1ka5_A 1 MEQNSYVIIDETGIHARPATMLVQTASKFDSDIQLEYNGKKVNLKSIMGVMSLGVGKDAEITIYADGSDESD---AIQAI 77 (88)
T ss_dssp CEEEEEEBCCTTCSCHHHHHHHHHHHHHHSSEEEEEETTEEEETTCHHHHHTTTCCTTCEEEEEEESSSHHH---HHHHH
T ss_pred CcEEEEEEcCCCCccHHHHHHHHHHHhhCCCeEEEEECCEEEehHhHHHHHhcCCCCCCEEEEEEeCCCHHH---HHHHH
Confidence 4678888887777 3355677777888 455553 2221100 1 1358899999765 55555
Q ss_pred HhhhccCCc
Q 031642 144 FKKFHRGAF 152 (156)
Q Consensus 144 ~~~~~~~~f 152 (156)
.+++.+.-|
T Consensus 78 ~~l~~~~~~ 86 (88)
T 1ka5_A 78 SDVLSKEGL 86 (88)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHcCC
Confidence 555543333
No 25
>3ssq_A Carbon dioxide concentrating mechanism protein; bacterial microcompartment fold, shell forming, pore forming structural protein; 2.20A {Thermosynechococcus elongatus}
Probab=47.53 E-value=27 Score=26.22 Aligned_cols=46 Identities=13% Similarity=0.256 Sum_probs=36.4
Q ss_pred HHHHHhCCCceeeccccccCCCeEEEEEecCHHHHHHHHHHHHhhhc
Q 031642 102 SKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 148 (156)
Q Consensus 102 ~~Iq~~~Pdv~IGSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~~~~ 148 (156)
.+...+--+|+|..|-....|.+.+.++| |-..+++|+++-.+...
T Consensus 40 ADam~KAA~V~Lv~~~~~~~G~~~v~i~G-DVsAV~aAV~ag~~aa~ 85 (122)
T 3ssq_A 40 ADAMVKAARVTLVGYEKIGSGRVTVIVRG-DVSEVQASVAAGVDSAK 85 (122)
T ss_dssp HHHHHHHSSEEEEEEEEEETTEEEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhCCcEEEEEEecCCCEEEEEEEE-eHHHHHHHHHHHHHHHH
Confidence 45566668999999988877767788887 78889999988877654
No 26
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=47.12 E-value=68 Score=22.44 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=34.0
Q ss_pred hhhhhhHHHHHHhCCCcee-eccccccCCCeEEEEEecCHHHHHHHHHHHHh
Q 031642 95 LEAAQPLSKLCLEFPDLHI-GCYRKSRQGPLIISFEGKDQARIEAAIESLFK 145 (156)
Q Consensus 95 g~IA~~L~~Iq~~~Pdv~I-GSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~ 145 (156)
+.+++...+| ++.|+++| ++|+ ..|.+.+++.+.|.+.+.+.++++++
T Consensus 17 ~~~~~V~~~L-~~ipgvEi~~~~~--~~GkiVV~iEa~~~~~l~~~i~~I~~ 65 (95)
T 2jsx_A 17 ERISDISTQL-NAFPGCEVAVSDA--PSGQLIVVVEAEDSETLIQTIESVRN 65 (95)
T ss_dssp TSHHHHHHHH-TTSTTEEEEEEET--TTTEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCHHHHHHHH-HCCCCeEEEEecC--CCCCEEEEEEeCCHHHHHHHHHHHhc
Confidence 3344444444 46799988 3332 14678999999999999998887765
No 27
>3ngk_A Propanediol utilization protein PDUA; BMC shell protein, carboxysome, unknown FU; 2.26A {Salmonella enterica subsp}
Probab=46.97 E-value=25 Score=25.61 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=32.8
Q ss_pred HHHHhCCCceeeccccccCCCeEEEEEecCHHHHHHHHHHHHhhhc
Q 031642 103 KLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 148 (156)
Q Consensus 103 ~Iq~~~Pdv~IGSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~~~~ 148 (156)
+...+--+|+|..|-....|.+.++++| |-..+++|+++-.+...
T Consensus 30 Dam~KAA~V~lv~~~~~~~G~~~v~v~G-DVsaV~aAv~ag~~aa~ 74 (102)
T 3ngk_A 30 DAMVKSANVMLVGYEKIGSGLVTVIVRG-DVGAVKAATDAGAAAAR 74 (102)
T ss_dssp HHHHHHSSCEEEEEEECSTTEEEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred HHHhhhCCcEEEEEEecCCcEEEEEEEE-eHHHHHHHHHHHHHHHh
Confidence 4455667999999976655556677776 78888888888776543
No 28
>4axj_A EUTM, ethanolamine carboxysome structural protein; bacterial microcompartment; 1.62A {Clostridium difficile}
Probab=46.74 E-value=30 Score=25.24 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=33.2
Q ss_pred HHHHhCCCceeeccccccCCCeEEEEEecCHHHHHHHHHHHHhhhc
Q 031642 103 KLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 148 (156)
Q Consensus 103 ~Iq~~~Pdv~IGSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~~~~ 148 (156)
+...+--+|++..|-....|.+.++++| |-..+++|+++-.+...
T Consensus 24 Dam~KaA~V~lv~~~~~~~G~~~v~i~G-DVsaV~aAv~ag~~aa~ 68 (104)
T 4axj_A 24 DAMVKAANVQLVGKEQVGGGLVTVMVRG-DVGAVKAATDAGAAAAE 68 (104)
T ss_dssp HHHHHHSSCEEEEEEECSTTEEEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred HHHhhhCCcEEEEEEecCCeEEEEEEEE-cHHHHHHHHHHHHHHHh
Confidence 4555667999999976655556677887 78888888888776553
No 29
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=46.71 E-value=24 Score=27.30 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=32.7
Q ss_pred EEEecCCCCchHHHHHHHHHHhHHhCCCccCCceEEEEEEecCCchh--hhhhHHHHHHhCCCcee
Q 031642 50 VIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLE--AAQPLSKLCLEFPDLHI 113 (156)
Q Consensus 50 V~VMAGV~VP~I~aMl~~l~p~L~~G~L~~gap~~S~tv~~~~~Eg~--IA~~L~~Iq~~~Pdv~I 113 (156)
|+|-+|+-++.+.+|+..++.....+ .++.- +.....+.+ ..+.|.++++++|++.+
T Consensus 160 vliagGtGitP~~s~l~~~~~~~~~~-----~~v~l--~~~~r~~~d~~~~~el~~l~~~~~~~~~ 218 (290)
T 2r6h_A 160 LYIGGGAGMAPLRAQILHLFRTLKTG-----RKVSY--WYGARSKNEIFYEEDFREIEREFPNFKF 218 (290)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHTSCCC-----SCEEE--EEEESSGGGCCSHHHHHHHHHHCTTEEE
T ss_pred EEEECccCHHHHHHHHHHHHHhcCCC-----CcEEE--EEEcCCHHHHHHHHHHHHHHHhCCCeEE
Confidence 56666655566667777766442222 34321 222333334 46789999999887654
No 30
>3mpy_A Ethanolamine utilization protein EUTM; bacterial microcompartment, shell protein, ethanolamine AMMO lyase, carboxysome, membrane protein; 2.00A {Escherichia coli} PDB: 3mpw_G 3i6p_A
Probab=46.03 E-value=32 Score=25.03 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=33.6
Q ss_pred HHHHhCCCceeeccccccCCCeEEEEEecCHHHHHHHHHHHHhhhc
Q 031642 103 KLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFH 148 (156)
Q Consensus 103 ~Iq~~~Pdv~IGSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~~~~ 148 (156)
+...+--+|++..|-...+|.+.++++| |-..+++|+++..+...
T Consensus 20 Dam~KAA~V~l~~~~~~~~G~~~v~i~G-DVsaV~aAv~ag~~aa~ 64 (103)
T 3mpy_A 20 DAMVKAARVKLVGVKQIGGGLCTAMVRG-DVAACKAATDAGAAAAQ 64 (103)
T ss_dssp HHHHHHSSEEEEEEEECSTTEEEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred HHHhhhCCcEEEEEEecCCCEEEEEEEE-eHHHHHHHHHHHHHHHh
Confidence 4555667999999976655556788887 78888888888776543
No 31
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=43.99 E-value=49 Score=23.31 Aligned_cols=49 Identities=14% Similarity=0.014 Sum_probs=35.1
Q ss_pred CCchhhhhhHHHHHHhCCCc-eeeccccccCCCeEEEEEecCHHHHHHHHHHHHh
Q 031642 92 LSDLEAAQPLSKLCLEFPDL-HIGCYRKSRQGPLIISFEGKDQARIEAAIESLFK 145 (156)
Q Consensus 92 ~~Eg~IA~~L~~Iq~~~Pdv-~IGSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~ 145 (156)
-.-|.+|..++.|+++.=++ ++.+++ .++...+++|-.|. ++|.+.|++
T Consensus 81 d~pGvla~i~~~L~~~~InI~~~~~~~--~~~~~~~~i~~~d~---~~A~~~L~~ 130 (144)
T 2f06_A 81 NVPGALAKVLGFLSAEGVFIEYMYSFA--NNNVANVVIRPSNM---DKCIEVLKE 130 (144)
T ss_dssp SSTTHHHHHHHHHHHTTCCEEEEEEEE--ETTEEEEEEEESCH---HHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHCCCCEEEEEEEc--cCCcEEEEEEeCCH---HHHHHHHHH
Confidence 45689999999999998888 778886 44556677877654 445555554
No 32
>2ewh_A Major carboxysome shell protein 1A; bacterial microcompartment domain; 1.40A {Halothiobacillus neapolitanus} SCOP: d.58.56.1 PDB: 2g13_A 3h8y_A
Probab=43.37 E-value=40 Score=24.09 Aligned_cols=47 Identities=11% Similarity=0.143 Sum_probs=35.1
Q ss_pred HHHHHhCCCceeeccccccCCCeEEEEEecCHHHHHHHHHHHHhhhcc
Q 031642 102 SKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR 149 (156)
Q Consensus 102 ~~Iq~~~Pdv~IGSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~~~~~ 149 (156)
.+...+--+|++..|-....|.+.+.++| |-..+++|+++..+...+
T Consensus 24 AD~~~KaA~V~l~~~~~~~~g~~tv~i~G-dv~aV~aAv~ag~~~~~~ 70 (98)
T 2ewh_A 24 ADAMTKAAEVRLVGRQFVGGGYVTVLVRG-ETGAVNAAVRAGADACER 70 (98)
T ss_dssp HHHHHHHSSEEEEEEEEEETTEEEEEEEE-CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhCCcEEEEEEccCCeEEEEEEEE-cHHHHHHHHHHHHHHHHh
Confidence 45556667899999876655545567777 788899999998877754
No 33
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=43.26 E-value=95 Score=22.75 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=44.4
Q ss_pred EEEEecCCchhhhhhHHHHHHhCCCceeeccccccCC--CeEEEEEe---cCH-HHHHHHHHHHHhhhc
Q 031642 86 KSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQG--PLIISFEG---KDQ-ARIEAAIESLFKKFH 148 (156)
Q Consensus 86 ~tv~~~~~Eg~IA~~L~~Iq~~~Pdv~IGSYP~~~~g--~~~lVvRG---~D~-~~l~aA~~~l~~~~~ 148 (156)
.++...--+=.++..|+..-.+.|+|.+=.|---.+. .+.|.|+- .++ +.|..|.++|.+.+.
T Consensus 31 ~~f~i~~EDHTLgNlLr~~Llk~p~V~fAgY~vpHPl~~~~~lrIqT~~~~~p~eaL~~a~~~L~~~~~ 99 (120)
T 1twf_K 31 VVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLG 99 (120)
T ss_dssp EEEEEESCCHHHHHHHHHHHTTCTTEEEEEEECSCTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCchHHHHHHHHHhhCCCeeEEeeecCCCCCCccEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 3444555666799999999999999999999764433 34444443 344 688888888877653
No 34
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=42.28 E-value=39 Score=28.53 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=40.8
Q ss_pred EEecCCchhhhhhHHHHHHhCCCcee-eccccccCCCeEEEEEecCHHHHHHHHHHHHhhh
Q 031642 88 LTTNLSDLEAAQPLSKLCLEFPDLHI-GCYRKSRQGPLIISFEGKDQARIEAAIESLFKKF 147 (156)
Q Consensus 88 v~~~~~Eg~IA~~L~~Iq~~~Pdv~I-GSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~~~ 147 (156)
+.....|..+.+.|.+|+..-..+.| ||||....... -+-.|......++|.+-|..+-
T Consensus 251 ~eg~~~d~~v~~aL~~L~~~~~~~kiLGsYp~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~ 310 (313)
T 3mwb_A 251 ADGHATDSRVADALAGLHRISPATRFLGSYARADKQPA-VVAPHTSDAAFASAHAWVDSIL 310 (313)
T ss_dssp EESCTTSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCC-CCCTTCSHHHHHHHHHHHHHHH
T ss_pred EeCCCCcHHHHHHHHHHHHhcCcEEEEeeeecCccCCc-ccCCCCCCcchhHHHHHHHHhh
Confidence 33345667899999999998888765 99997653332 2345566677777777766553
No 35
>2w7v_A General secretion pathway protein L; transport, type II secretion, transport protein; 2.30A {Vibrio parahaemolyticus}
Probab=41.50 E-value=31 Score=24.66 Aligned_cols=13 Identities=15% Similarity=-0.069 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhHH
Q 031642 61 LDKEWNCLIELLR 73 (156)
Q Consensus 61 I~aMl~~l~p~L~ 73 (156)
+-.||+.+.|.|.
T Consensus 10 fl~lL~~L~~~l~ 22 (95)
T 2w7v_A 10 MLSWLAALPATLG 22 (95)
T ss_dssp HHHHGGGHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 4445555555553
No 36
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=41.48 E-value=53 Score=23.64 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=37.2
Q ss_pred ecCCchhhhhhHHHHHHhCCCceeeccccccCCCeEEEEE--e-cCHHHHHHHHHHHHhhh
Q 031642 90 TNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFE--G-KDQARIEAAIESLFKKF 147 (156)
Q Consensus 90 ~~~~Eg~IA~~L~~Iq~~~Pdv~IGSYP~~~~g~~~lVvR--G-~D~~~l~aA~~~l~~~~ 147 (156)
+..++ ++.+.|.++|+++.+...+ ..+.....+.|+++ | .|.++++++.+.|.+..
T Consensus 7 l~~p~-~~~~~l~~~~~~l~~~~~~-~~~v~~~~lHiTL~flg~~~~~~~~~l~~~l~~~~ 65 (184)
T 1vgj_A 7 IDVNE-SVRDSLVRAQDYIGSKEAK-IKFVERENLHITLKFLGEITEEQAEEIKNILKKIA 65 (184)
T ss_dssp EECCH-HHHHHHHHHHHHHCSSSEE-EEECCGGGCEEEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EcCCH-HHHHHHHHHHHHHhhcCCC-cEecCccccEEEEEeecCCCHHHHHHHHHHHHHHH
Confidence 34455 7999999999999765322 23233345555554 4 58888888888887765
No 37
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=38.43 E-value=33 Score=22.78 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.4
Q ss_pred EEEEEecCHHHHHHHHHHHHhhhc
Q 031642 125 IISFEGKDQARIEAAIESLFKKFH 148 (156)
Q Consensus 125 ~lVvRG~D~~~l~aA~~~l~~~~~ 148 (156)
.+.+.| |++.+++|.+.+.+++.
T Consensus 62 ~v~I~G-~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 62 PLRIIG-DPYKVQQACEMVMDILR 84 (85)
T ss_dssp EEEEEE-CHHHHHHHHHHHHHHHT
T ss_pred EEEEEe-CHHHHHHHHHHHHHHhc
Confidence 488889 99999999999998875
No 38
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=37.94 E-value=15 Score=26.43 Aligned_cols=22 Identities=9% Similarity=0.320 Sum_probs=13.5
Q ss_pred CCchhhhhhHHHHHHhCCCcee
Q 031642 92 LSDLEAAQPLSKLCLEFPDLHI 113 (156)
Q Consensus 92 ~~Eg~IA~~L~~Iq~~~Pdv~I 113 (156)
+...-+...|.+.+++||++.|
T Consensus 29 ~~~~~L~~~l~~f~~~~P~i~l 50 (218)
T 2qsx_A 29 FASLWLVPNINDFHQRHPNIRV 50 (218)
T ss_dssp HHHHTHHHHHHHHHHHCTTCEE
T ss_pred HHHHHHHHHHHHHHHHCCCeEE
Confidence 3455566666666777776544
No 39
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=37.93 E-value=82 Score=23.34 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=44.7
Q ss_pred EEEEecCCchhhhhhHHHHHHhCCCceeecccccc--CCCeEEEEEec---C-HHHHHHHHHHHHhhh
Q 031642 86 KSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSR--QGPLIISFEGK---D-QARIEAAIESLFKKF 147 (156)
Q Consensus 86 ~tv~~~~~Eg~IA~~L~~Iq~~~Pdv~IGSYP~~~--~g~~~lVvRG~---D-~~~l~aA~~~l~~~~ 147 (156)
.++...--+=.++..|+..-.+.|+|.+=.|---. ...+.|.++-. + .+.|..|.++|.+.+
T Consensus 30 ~~f~i~~EDHTLgNlLr~~Llk~p~V~fAgY~vpHPle~~~~lrIqT~~~~~p~eaL~~al~~L~~~~ 97 (123)
T 3h0g_K 30 AVVTLEKEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITHL 97 (123)
T ss_dssp EEEEEESCCSSHHHHHHHTGGGSTTCSCBCCBCSCTTSCEEEEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCcchHHHHHHHHhcCCCeeEeeecCCCCCCCceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 34444555667999999999999999999996543 34455666543 2 378888888887765
No 40
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=37.33 E-value=97 Score=26.89 Aligned_cols=76 Identities=11% Similarity=-0.053 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhHHhCCCccCCceEEEEEEecCCchhhhhhHHHHHHhC--CCceeecccccc-CCCe--------EEEEE
Q 031642 61 LDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEF--PDLHIGCYRKSR-QGPL--------IISFE 129 (156)
Q Consensus 61 I~aMl~~l~p~L~~G~L~~gap~~S~tv~~~~~Eg~IA~~L~~Iq~~~--Pdv~IGSYP~~~-~g~~--------~lVvR 129 (156)
+++.++.|.+.|+.| +.++.+| + .+-|.....-..++++. -|..+.|=|.+- +|.. .||+=
T Consensus 108 v~~v~~~i~~~l~~g-----~iVV~~S-T--v~pgtt~~l~~~l~e~~~~~d~~v~~~Pe~a~eG~a~~d~~~p~~ivvG 179 (446)
T 4a7p_A 108 VFAAAREIAENLTKP-----SVIVTKS-T--VPVGTGDEVERIIAEVAPNSGAKVVSNPEFLREGAAIEDFKRPDRVVVG 179 (446)
T ss_dssp HHHHHHHHHHSCCSC-----CEEEECS-C--CCTTHHHHHHHHHHHHSTTSCCEEEECCCCCCTTSHHHHHHSCSCEEEE
T ss_pred HHHHHHHHHHhcCCC-----CEEEEeC-C--CCchHHHHHHHHHHHhCCCCCceEEeCcccccccchhhhccCCCEEEEe
Confidence 566677777775555 8787766 2 33333323223333333 467888889766 4532 46666
Q ss_pred ecCHHHHHHHHHHHH
Q 031642 130 GKDQARIEAAIESLF 144 (156)
Q Consensus 130 G~D~~~l~aA~~~l~ 144 (156)
|.|++..+.+..-+.
T Consensus 180 ~~~~~~~~~~~~ly~ 194 (446)
T 4a7p_A 180 TEDEFARQVMREIYR 194 (446)
T ss_dssp CSCHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHH
Confidence 666665555444333
No 41
>2wvf_A Hpnikr, putative nickel-responsive regulator; transcription factor, transcription regulation, RHH, DNA-binding, transcription, metal-binding; 1.60A {Helicobacter pylori} PDB: 2wvc_A 3pht_A 2ca9_A 2cad_A* 2caj_A 3lgh_A 2wvd_A 2wve_A* 2wvb_A 2y3y_A* 3qsi_B
Probab=36.72 E-value=1.3e+02 Score=22.42 Aligned_cols=54 Identities=9% Similarity=-0.056 Sum_probs=40.3
Q ss_pred cCCchhhhhhHHHHHHhCCCceeeccccccCCCe---EEEEEecCHHHHHHHHHHHHh
Q 031642 91 NLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPL---IISFEGKDQARIEAAIESLFK 145 (156)
Q Consensus 91 ~~~Eg~IA~~L~~Iq~~~Pdv~IGSYP~~~~g~~---~lVvRG~D~~~l~aA~~~l~~ 145 (156)
+-...+++..|.+||.+|-|+-+++.=..-+... .|+++|. .+++.+-..+|.+
T Consensus 73 dh~~~~l~~~l~~iqh~~~d~Iis~~Hvhld~~~clEvivv~G~-~~~I~~l~~kl~~ 129 (148)
T 2wvf_A 73 DGGQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGN-SFEIQRLQLEIGG 129 (148)
T ss_dssp ETTSTTHHHHHHHHHHHCSSEEEEEEEEECSSSEEEEEEEEEEC-HHHHHHHHHHHHT
T ss_pred cCCchhHHHHHHHHHHhccCeEEEEeeEEcCCCCEEEEEEEEcC-HHHHHHHHHHHhc
Confidence 3344789999999999999999999765544442 5999995 5567776666655
No 42
>4axi_A EUTS, ethanolamine carboxysome structural protein; bacterial microcompartment; HET: GOL; 1.51A {Clostridium difficile}
Probab=36.55 E-value=61 Score=24.28 Aligned_cols=45 Identities=11% Similarity=0.289 Sum_probs=35.1
Q ss_pred HHHHHHhCCCceeeccccccCCCeEEEEEecCHHHHHHHHHHHHhhhcc
Q 031642 101 LSKLCLEFPDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR 149 (156)
Q Consensus 101 L~~Iq~~~Pdv~IGSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~~~~~ 149 (156)
-.+.+.+--+|+|+.+-.+ ...++++| |.+.+++|+++..+.+.+
T Consensus 61 AAD~A~KAAnVel~~~~~~---~g~vii~G-DVsaV~aAvea~~~~~~~ 105 (125)
T 4axi_A 61 AADVATKASNVSLGFIDRF---SGSVVISG-DVSSVESALNDVLEVLGN 105 (125)
T ss_dssp HHHHHHTSTTEEEEEECTT---TCCEEEEE-CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhcCcEEEEEECC---EEEEEEEE-eHHHHHHHHHHHHHHHhh
Confidence 3567778889999864322 33589999 999999999999888754
No 43
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=36.03 E-value=58 Score=26.69 Aligned_cols=81 Identities=9% Similarity=0.063 Sum_probs=47.1
Q ss_pred Cceeee-ccCCCCceeeCCCcccceeEeC------eEEEecCCCCchHHHHHHHHHHhHHhCCCccCCceEEEEEEecCC
Q 031642 21 PRWLCC-RKVPPNCCITTSCSYLWYIKCQ------NVIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLS 93 (156)
Q Consensus 21 ~~~~~~-~~~~~~~~I~NpvS~APGF~ig------NV~VMAGV~VP~I~aMl~~l~p~L~~G~L~~gap~~S~tv~~~~~ 93 (156)
-+||+- -++-...-|..|.. .|.+. =|.|-+|+-++.+.+|++.+.. ..+ .++.- +.....
T Consensus 237 S~~L~~~l~~Gd~v~v~gP~G---~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~--~~~-----~~v~l--~~~~r~ 304 (403)
T 1cqx_A 237 SNLLHDHVNVGDQVKLAAPYG---SFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ--APP-----RQVVF--VHGARN 304 (403)
T ss_dssp HHHHHHHCCTTCEEEECCCBC---SCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC--SSC-----CCEEE--EEEESC
T ss_pred hHHHhhCCCCCCEEEEecCcc---CcccCCCCCCCEEEEEecccHhhHHHHHHHHHh--CCC-----CcEEE--EEEeCC
Confidence 467762 34444444555554 34442 2677777767777888888764 122 44422 223333
Q ss_pred --chhhhhhHHHHHHhCCCcee
Q 031642 94 --DLEAAQPLSKLCLEFPDLHI 113 (156)
Q Consensus 94 --Eg~IA~~L~~Iq~~~Pdv~I 113 (156)
+-...+.|.++++++|++.+
T Consensus 305 ~~~~~~~~el~~l~~~~~~~~~ 326 (403)
T 1cqx_A 305 SAVHAMRDRLREAAKTYENLDL 326 (403)
T ss_dssp SSSCHHHHHHHHHHHHCTTEEE
T ss_pred hhhCcHHHHHHHHHHhCCCcEE
Confidence 33456789999999997654
No 44
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=35.62 E-value=45 Score=24.99 Aligned_cols=87 Identities=7% Similarity=0.053 Sum_probs=42.1
Q ss_pred CCceeeeccCCCCceeeCCCcccc--eeEeCeE-EEecCCCCchHHHHHHHHHHhHHhCCCccCCceEEEEEEecCCch-
Q 031642 20 YPRWLCCRKVPPNCCITTSCSYLW--YIKCQNV-IILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDL- 95 (156)
Q Consensus 20 ~~~~~~~~~~~~~~~I~NpvS~AP--GF~igNV-~VMAGV~VP~I~aMl~~l~p~L~~G~L~~gap~~S~tv~~~~~Eg- 95 (156)
.-+||+--++-...-|..|...-+ --.-+++ +|-+|+-++.+.+|++.+...-..+ .++.- +.....+.
T Consensus 87 ~S~~l~~l~~Gd~v~v~gP~G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~~~-----~~v~l--~~~~r~~~~ 159 (243)
T 2eix_A 87 MSQYIDHLNPGDFLQVRGPKGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPKEK-----TIINL--IFANVNEDD 159 (243)
T ss_dssp HHHHHHTCCTTCEEEEEEEECSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTTCC-----CEEEE--EEEEEEGGG
T ss_pred cchHhhcCCCCCEEEEECCeEEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHhCCCCC-----cEEEE--EEEcCCHHH
Confidence 457775323222233445543311 0012444 5555654555666777775320011 33221 11222233
Q ss_pred -hhhhhHHHHHHhCCCcee
Q 031642 96 -EAAQPLSKLCLEFPDLHI 113 (156)
Q Consensus 96 -~IA~~L~~Iq~~~Pdv~I 113 (156)
-..+.|.++++++|++.+
T Consensus 160 ~~~~~el~~l~~~~~~~~~ 178 (243)
T 2eix_A 160 ILLRTELDDMAKKYSNFKV 178 (243)
T ss_dssp CTTHHHHHHHHHHCTTEEE
T ss_pred hhHHHHHHHHHHHCCCeEE
Confidence 355789999999987654
No 45
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=35.54 E-value=58 Score=25.32 Aligned_cols=54 Identities=26% Similarity=0.415 Sum_probs=34.5
Q ss_pred cCCch---hhhhhHHHHHHhCCCceeeccccccCC-Ce-EEEEEecCHHHHHHHHHHHHhh
Q 031642 91 NLSDL---EAAQPLSKLCLEFPDLHIGCYRKSRQG-PL-IISFEGKDQARIEAAIESLFKK 146 (156)
Q Consensus 91 ~~~Eg---~IA~~L~~Iq~~~Pdv~IGSYP~~~~g-~~-~lVvRG~D~~~l~aA~~~l~~~ 146 (156)
..+|- ++|..-++++++|--. =.|-....| ++ .|++||.|-+.++.|.++....
T Consensus 49 gvpeqvrkelakeaerl~~efni~--v~y~imgsgsgvm~i~f~gddlea~ekalkemirq 107 (170)
T 4hhu_A 49 GVPEQVRKELAKEAERLKAEFNIN--VQYQIMGSGSGVMVIVFEGDDLEALEKALKEMIRQ 107 (170)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTCE--EEEEEECTTCCEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHhcceE--EEEEEEeCCceEEEEEEecCcHHHHHHHHHHHHHH
Confidence 35553 5666667777777321 124433323 44 5999999999999988776543
No 46
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=34.60 E-value=1.1e+02 Score=22.60 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=34.1
Q ss_pred EEEecCCCCchHHHHHHHHHHhHHhCCCccCCceEEEEEEecCCchh--hhhhHHHHHHhCCCcee
Q 031642 50 VIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLE--AAQPLSKLCLEFPDLHI 113 (156)
Q Consensus 50 V~VMAGV~VP~I~aMl~~l~p~L~~G~L~~gap~~S~tv~~~~~Eg~--IA~~L~~Iq~~~Pdv~I 113 (156)
|+|-.|+-++.+.+|++.+... | ...++.- +.....+.+ ..+.|.++++++|++.+
T Consensus 106 vliagG~GitP~~~~l~~l~~~---~---~~~~v~l--~~~~r~~~~~~~~~el~~l~~~~~~~~~ 163 (232)
T 1qfj_A 106 ILIAGGTGFSYARSILLTALAR---N---PNRDITI--YWGGREEQHLYDLCELEALSLKHPGLQV 163 (232)
T ss_dssp EEEEETTCHHHHHHHHHHHHHH---C---TTCCEEE--EEEESSGGGCTTHHHHHHHHHHCTTEEE
T ss_pred EEEEecccHhHHHHHHHHHHhc---C---CCCcEEE--EEeeCCHHHhhhHHHHHHHHHHCCCeEE
Confidence 5677776677777788887753 2 0122211 223333334 45789999999998765
No 47
>3hxa_A Pterin-4-alpha-carbinolamine dehydratase; alpha and beta structure, lyase, nucleus, tetrahydrobiopteri biosynthesis; 1.80A {Rattus norvegicus} SCOP: d.74.1.1 PDB: 1dco_A 1dch_A 1dcp_A* 1f93_A
Probab=34.24 E-value=48 Score=23.52 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=41.1
Q ss_pred ecCCCCchH-HHHHHHHHHhHHhCC--CccCCceEEEEEEec-CCchh-hh---hhHHHHHHhCCCceeeccccccCCCe
Q 031642 53 LTATNVTEL-DKEWNCLIELLRSGG--LSLMEPYTSKSLTTN-LSDLE-AA---QPLSKLCLEFPDLHIGCYRKSRQGPL 124 (156)
Q Consensus 53 MAGV~VP~I-~aMl~~l~p~L~~G~--L~~gap~~S~tv~~~-~~Eg~-IA---~~L~~Iq~~~Pdv~IGSYP~~~~g~~ 124 (156)
|+|- .|.+ ....+..+..|..-| +..+..-+.|+.... ..+.- +. +.+.+-...|||++++ | +.+
T Consensus 1 m~~~-~~~Ls~~ei~~~L~~L~~~gW~~~~~~~~l~r~f~F~~f~~a~~F~~~Va~~AE~~~HHPdi~~~-y-----~~V 73 (104)
T 3hxa_A 1 MAGK-AHRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMSRVALQAEKLDHHPEWFNV-Y-----NKV 73 (104)
T ss_dssp -----CCCCCHHHHHHHSHHHHTTTCEECSSSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEE-T-----TEE
T ss_pred CCCC-CccCCHHHHHHHHhhCCCCCCEEecCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEe-C-----CEE
Confidence 5552 4556 667777777774222 222345678888765 34431 22 3355556778999986 4 345
Q ss_pred EEEEEecCH
Q 031642 125 IISFEGKDQ 133 (156)
Q Consensus 125 ~lVvRG~D~ 133 (156)
.|.+..-|.
T Consensus 74 ~v~l~THd~ 82 (104)
T 3hxa_A 74 HITLSTHEC 82 (104)
T ss_dssp EEEECBTTT
T ss_pred EEEEEeCCC
Confidence 566655443
No 48
>3le1_A Phosphotransferase system, HPR-related proteins; HPR PTS phosphotransfer, kinase; 1.51A {Thermoanaerobacter tengcongensis} SCOP: d.94.1.0 PDB: 3le3_A 3lnw_A 3lfg_A 3le5_A
Probab=33.00 E-value=41 Score=22.99 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=42.7
Q ss_pred eEEEEEEecCCchh---hhhhHHHHHHhCC-Cceeecccccc-C--------------C-CeEEEEEecCHHHHHHHHHH
Q 031642 83 YTSKSLTTNLSDLE---AAQPLSKLCLEFP-DLHIGCYRKSR-Q--------------G-PLIISFEGKDQARIEAAIES 142 (156)
Q Consensus 83 ~~S~tv~~~~~Eg~---IA~~L~~Iq~~~P-dv~IGSYP~~~-~--------------g-~~~lVvRG~D~~~l~aA~~~ 142 (156)
|+++++....+.|- -|..|-+++++|+ ++.|-. -... + | .+.|.+.|.|+++ |.++
T Consensus 1 M~~~~~~i~n~~GLHARpAa~lv~~a~~f~s~I~i~~-~~~~vnaKSim~lm~Lg~~~G~~i~i~a~G~De~~---A~~~ 76 (88)
T 3le1_A 1 MKEVTIEIKNKTGLHARPAALFVQTASKFSSQIWVEK-DNKKVNAKSIMGIMSLGVSQGNVVKLSAEGDDEEE---AIKA 76 (88)
T ss_dssp CEEEEEECCSTTCSSHHHHHHHHHHHTTSSSEEEEEE-TTEEEETTCHHHHHHHCCCTTCEEEEEEESTTHHH---HHHH
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHhhCCCeEEEEE-CCEEEehHhHHHHHhcCCCCCCEEEEEEeCCCHHH---HHHH
Confidence 46788887777774 3566777888885 566631 1111 1 1 2358889999764 6777
Q ss_pred HHhhhccCCccc
Q 031642 143 LFKKFHRGAFSE 154 (156)
Q Consensus 143 l~~~~~~~~f~~ 154 (156)
|.++|..+ |-|
T Consensus 77 l~~l~~~~-fge 87 (88)
T 3le1_A 77 LVDLIESK-FGE 87 (88)
T ss_dssp HHHHHHTT-TTC
T ss_pred HHHHHHhc-cCC
Confidence 77777743 654
No 49
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=31.51 E-value=35 Score=25.30 Aligned_cols=22 Identities=9% Similarity=0.143 Sum_probs=17.2
Q ss_pred EEEecCCCCchH-HHHHHH-HHHhHH
Q 031642 50 VIILTATNVTEL-DKEWNC-LIELLR 73 (156)
Q Consensus 50 V~VMAGV~VP~I-~aMl~~-l~p~L~ 73 (156)
||.|+| +|.- +.||+. +.|.|+
T Consensus 147 i~~LPG--~P~~~~~~~~~~v~P~L~ 170 (178)
T 3iwt_A 147 VYLLPG--SPDAVKLALKELILPEVG 170 (178)
T ss_dssp EEEECS--CHHHHHHHHHHTHHHHHH
T ss_pred EEECCC--CHHHHHHHHHHHHHHHHH
Confidence 788999 7985 678874 788875
No 50
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA- binding, metal-binding, transcription regulation; HET: PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3 d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Probab=31.20 E-value=1.5e+02 Score=21.54 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=40.9
Q ss_pred CCchhhhhhHHHHHHhCCCceeeccccccCCCe---EEEEEecCHHHHHHHHHHHHh
Q 031642 92 LSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPL---IISFEGKDQARIEAAIESLFK 145 (156)
Q Consensus 92 ~~Eg~IA~~L~~Iq~~~Pdv~IGSYP~~~~g~~---~lVvRG~D~~~l~aA~~~l~~ 145 (156)
-.+.++++.|.+||.+|-|+-+++.=..-+... .+++||. .+++.+-..+|.+
T Consensus 64 h~~~~l~~~l~~iqh~~~d~I~s~~hvhl~~~~clevivv~G~-~~~I~~l~~~l~~ 119 (138)
T 2bj7_A 64 HDEGDVVKALLDLQHEYLDEIISSLHVHMDEHNCLEVIVVKGE-AKKIKMIADKLLS 119 (138)
T ss_dssp TTSTTHHHHHHHHHHHTTTTEEEEEEEECSSSEEEEEEEEEEE-HHHHHHHHHHHHT
T ss_pred CcchhHHHHHHHHHHhccCeEEEEeeEEcCCCCEEEEEEEEcC-HHHHHHHHHHHhc
Confidence 356789999999999999999999665544442 5999995 5567777777766
No 51
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa}
Probab=30.88 E-value=1.4e+02 Score=21.01 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=48.7
Q ss_pred CchHHHHHHHHHHhHHhCCCccCCceEEEEEEe---c-C-----------CchhhhhhHHHHHHhCCCceeeccccccCC
Q 031642 58 VTELDKEWNCLIELLRSGGLSLMEPYTSKSLTT---N-L-----------SDLEAAQPLSKLCLEFPDLHIGCYRKSRQG 122 (156)
Q Consensus 58 VP~I~aMl~~l~p~L~~G~L~~gap~~S~tv~~---~-~-----------~Eg~IA~~L~~Iq~~~Pdv~IGSYP~~~~g 122 (156)
+|.-+.+.+.+...++.+ .++.--.+.. + + ++--+...=..|+...++ ++ -|+ ..++
T Consensus 8 L~Nr~~f~~~l~~~~~~~-----~~~~l~~i~i~~id~f~~in~~~G~~~gD~~L~~ia~~L~~~~~~-~~-v~R-~~~d 79 (176)
T 3hvw_A 8 LYNRLRLQEDVSLRLQRD-----GALTVIAADLLPLALLNTIIRTLGYPFSNDLMLEARDRIRAELPD-FT-LYK-ISPT 79 (176)
T ss_dssp -CCHHHHHHHHHHHHHHH-----SEEEEEEEECSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCTT-SC-EEE-EETT
T ss_pred ChhHHHHHHHHHHHHhcC-----CCceEEEEEecCHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHCCC-Ce-EEE-ecCC
Confidence 576555555555554444 5554444554 1 1 122222333344455665 32 122 2356
Q ss_pred CeEEEEEecCHHHHHHHHHHHHhhhcc
Q 031642 123 PLIISFEGKDQARIEAAIESLFKKFHR 149 (156)
Q Consensus 123 ~~~lVvRG~D~~~l~aA~~~l~~~~~~ 149 (156)
.|.|++.+.|.+.+.+.++.|.+.+.+
T Consensus 80 eF~ill~~~~~~~~~~~~~~l~~~~~~ 106 (176)
T 3hvw_A 80 RFGLLLPRQQQEETESVCLRLLRAFES 106 (176)
T ss_dssp EEEEEEEGGGGGGHHHHHHHHHHHTTS
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHhC
Confidence 799999999999999999999998874
No 52
>1kkl_H Phosphocarrier protein HPR; phosphorylation, protein kinase, bacteria, protein/protein interaction, transferase; 2.80A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1kkm_H*
Probab=30.84 E-value=44 Score=23.72 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=40.1
Q ss_pred ceEEEEEEecCCchhh---hhhHHHHHHhCC-Cceee--ccccccC------------C-CeEEEEEecCHHHHHHHHHH
Q 031642 82 PYTSKSLTTNLSDLEA---AQPLSKLCLEFP-DLHIG--CYRKSRQ------------G-PLIISFEGKDQARIEAAIES 142 (156)
Q Consensus 82 p~~S~tv~~~~~Eg~I---A~~L~~Iq~~~P-dv~IG--SYP~~~~------------g-~~~lVvRG~D~~~l~aA~~~ 142 (156)
.++++++....+.|-= |..|-+++++|+ +|.|- .+.-.-. | .+.|.+.|.|++ +|.++
T Consensus 12 ~~~~~~v~I~n~~GLHARPAa~~v~~A~~f~s~I~i~~~~~~vdAKSIm~lmsLg~~~G~~i~i~a~G~Dee---~Al~~ 88 (100)
T 1kkl_H 12 SMAQKTFKVTADSGIHARPATVLVQTASKYDADVNLEYNGKTVNLKSIMGVMSLGIAKGAEITISASGADEN---DALNA 88 (100)
T ss_dssp ---CEEEEBCCTTCSCHHHHHHHHHHHHTCSSEEEEEETTEEEETTCHHHHHHTCCCTTCEEEEEEESTTHH---HHHHH
T ss_pred ceEEEEEEEcCCCccCHHHHHHHHHHHhhCCCeEEEEECCEEEecHhHHHHhcCCCCCCCEEEEEEeCCCHH---HHHHH
Confidence 3778888888777754 455666778884 55553 2221100 1 135889999975 45666
Q ss_pred HHhhhccCCccc
Q 031642 143 LFKKFHRGAFSE 154 (156)
Q Consensus 143 l~~~~~~~~f~~ 154 (156)
|.++|...-|-|
T Consensus 89 l~~li~~~~f~e 100 (100)
T 1kkl_H 89 LEETMKSERLGE 100 (100)
T ss_dssp HHHHHHHTTCBC
T ss_pred HHHHHHhcCCCC
Confidence 666665445543
No 53
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=30.61 E-value=1.4e+02 Score=22.44 Aligned_cols=56 Identities=11% Similarity=0.010 Sum_probs=33.9
Q ss_pred EEEecCCCCchHHHHHHHHHHhHHhCCCccCCceEEEEEEecCCchh--hhhhHHHHHHhCCCcee
Q 031642 50 VIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLE--AAQPLSKLCLEFPDLHI 113 (156)
Q Consensus 50 V~VMAGV~VP~I~aMl~~l~p~L~~G~L~~gap~~S~tv~~~~~Eg~--IA~~L~~Iq~~~Pdv~I 113 (156)
|+|-.|+-++.+.+|++.+... | ...++. -+.....+.+ ..+.|.++++++|++.+
T Consensus 121 vliagGtGiaP~~~~l~~l~~~---~---~~~~v~--l~~~~r~~~~~~~~~el~~l~~~~~~~~~ 178 (250)
T 1tvc_A 121 YFVAGGTGLAPVVSMVRQMQEW---T---APNETR--IYFGVNTEPELFYIDELKSLERSMRNLTV 178 (250)
T ss_dssp EEEEESSTTHHHHHHHHHHHHH---T---CCSCEE--EEEECSSSTTCCCHHHHHHHHHHSSSCEE
T ss_pred EEEEeccCHHHHHHHHHHHHhc---C---CCceEE--EEEEeCCHHHhhhHHHHHHHHHhCCCeEE
Confidence 5666676677778888887753 2 002221 1223333334 45789999999998765
No 54
>1pch_A Phosphocarrier protein; phosphotransferase; 1.80A {Mycoplasma capricolum} SCOP: d.94.1.1
Probab=30.23 E-value=45 Score=22.91 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=37.0
Q ss_pred EEEEEecCCchhh---hhhHHHHHHhC-CCceee--ccccccC------------C-CeEEEEEecCHHHHHHHHHHHHh
Q 031642 85 SKSLTTNLSDLEA---AQPLSKLCLEF-PDLHIG--CYRKSRQ------------G-PLIISFEGKDQARIEAAIESLFK 145 (156)
Q Consensus 85 S~tv~~~~~Eg~I---A~~L~~Iq~~~-Pdv~IG--SYP~~~~------------g-~~~lVvRG~D~~~l~aA~~~l~~ 145 (156)
++++.+..+.|-= |..|-+++++| -++.|- .+.-.-. | .+.|.+.|.|++ +|.++|.+
T Consensus 2 ~~~~~i~n~~GLHARPAa~~v~~a~~f~s~I~i~~~~~~vdaKSim~lmsLg~~~G~~i~i~a~G~De~---~Al~~l~~ 78 (88)
T 1pch_A 2 KFSAIITDKVGLHARPASVLAKEASKFSSNITIIANEKQGNLKSIMNVMAMAIKTGTEITIQADGNDAD---QAIQAIKQ 78 (88)
T ss_dssp EEEEECCCTTCSCHHHHHHHHHHHTTCSSEEEEEETTEEEETTCHHHHHHHCCCTTCEEEEEEESTTHH---HHHHHHHH
T ss_pred eEEEEECCCCCcCHHHHHHHHHHHhhCCCeEEEEECCEEEehHhHHHHHhcCCCCCCEEEEEEeCCCHH---HHHHHHHH
Confidence 4555555555533 44566666777 445553 2221000 1 245889999975 57777777
Q ss_pred hhccCCc
Q 031642 146 KFHRGAF 152 (156)
Q Consensus 146 ~~~~~~f 152 (156)
++..+.|
T Consensus 79 l~~~~~~ 85 (88)
T 1pch_A 79 TMIDTAL 85 (88)
T ss_dssp HHHHTTS
T ss_pred HHHhCCc
Confidence 7766655
No 55
>2ys2_A Cytoplasmic tyrosine-protein kinase BMX; bone marrow tyrosine kinase gene in chromosome X protein, epithelial and endothelial tyrosine kinase, ETK; NMR {Homo sapiens}
Probab=29.35 E-value=14 Score=23.82 Aligned_cols=17 Identities=29% Similarity=1.023 Sum_probs=11.0
Q ss_pred CceeeeccC---CCCceeeC
Q 031642 21 PRWLCCRKV---PPNCCITT 37 (156)
Q Consensus 21 ~~~~~~~~~---~~~~~I~N 37 (156)
-+|+||+.- -+.|-.-+
T Consensus 23 g~W~CC~q~~k~a~GC~~~~ 42 (50)
T 2ys2_A 23 GKFLCCQQSCKAAPGCTLWE 42 (50)
T ss_dssp TEESSSCCSSSSCCCCCCSC
T ss_pred CeECCCCCCCccCCCCcccc
Confidence 589999853 45555444
No 56
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=28.99 E-value=1.2e+02 Score=21.90 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=18.4
Q ss_pred CCchhhhhhHHHHHHhCCCceee
Q 031642 92 LSDLEAAQPLSKLCLEFPDLHIG 114 (156)
Q Consensus 92 ~~Eg~IA~~L~~Iq~~~Pdv~IG 114 (156)
+...-+...|.+++++||++.|=
T Consensus 101 ~~~~~l~~~l~~f~~~~P~v~i~ 123 (291)
T 3szp_A 101 LTKRMMMPMFNAFMEKYPDIHIE 123 (291)
T ss_dssp THHHHTHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCeEEE
Confidence 45667888899999999988764
No 57
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=28.13 E-value=38 Score=23.03 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=21.3
Q ss_pred EEEEEecCHHHHHHHHHHHHhhhcc
Q 031642 125 IISFEGKDQARIEAAIESLFKKFHR 149 (156)
Q Consensus 125 ~lVvRG~D~~~l~aA~~~l~~~~~~ 149 (156)
.+.+.| +.+.+++|.+.|.+++.+
T Consensus 63 ~v~I~G-~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 63 PLRITG-DPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp EEEEEE-CTTTHHHHHHHHHHHHCC
T ss_pred EEEEEe-CHHHHHHHHHHHHHHHhc
Confidence 588889 999999999999999865
No 58
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=27.41 E-value=50 Score=22.64 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=19.5
Q ss_pred CCceeeccccccCCCeEEEEEecCHHHHHHHHHHHHhhhccC
Q 031642 109 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRG 150 (156)
Q Consensus 109 Pdv~IGSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~~~~~~ 150 (156)
-.+.||+||-. .-++..+.++++++++.+|
T Consensus 49 ~~~~LG~yp~~------------sL~~AR~~a~~~r~~l~~G 78 (88)
T 3jtz_A 49 SRIALGAYPAI------------SLSDARQQREGIRKMLALN 78 (88)
T ss_dssp EEEEEEETTTS------------CHHHHHHHHHHHHHHHTCC
T ss_pred EEEEeECCCCC------------CHHHHHHHHHHHHHHHHcC
Confidence 45889999942 3444555566777777666
No 59
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=27.08 E-value=55 Score=22.83 Aligned_cols=52 Identities=10% Similarity=0.072 Sum_probs=32.9
Q ss_pred hhhHHHHHHhC-CCceeeccccccCC--CeEEEEEecCHHHHHHHHHHHHhhhccC
Q 031642 98 AQPLSKLCLEF-PDLHIGCYRKSRQG--PLIISFEGKDQARIEAAIESLFKKFHRG 150 (156)
Q Consensus 98 A~~L~~Iq~~~-Pdv~IGSYP~~~~g--~~~lVvRG~D~~~l~aA~~~l~~~~~~~ 150 (156)
..-+.+|+++. -.++|-.=.-...+ .-.|++.| +.+.+++|.+.|.+.+.+.
T Consensus 26 G~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G-~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 26 GENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRG-SPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp TCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEES-CHHHHHHHHHHHHHHSCSC
T ss_pred cHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEEC-CHHHHHHHHHHHHHHHhcc
Confidence 35577888775 22333211000111 13588999 9999999999999998754
No 60
>2e6i_A Tyrosine-protein kinase ITK/TSK; BTK, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.98 E-value=23 Score=23.97 Aligned_cols=18 Identities=22% Similarity=0.899 Sum_probs=13.2
Q ss_pred Cceeeecc---CCCCceeeCC
Q 031642 21 PRWLCCRK---VPPNCCITTS 38 (156)
Q Consensus 21 ~~~~~~~~---~~~~~~I~Np 38 (156)
-+|+||+. --+.|-+.++
T Consensus 23 GkW~CC~q~~k~a~GC~~~~~ 43 (64)
T 2e6i_A 23 GKWRCCSQLEKLATGCAQYDP 43 (64)
T ss_dssp SSBSSSCCSCTTCCCCEECCS
T ss_pred CeECCCCCCCccCCCCccccc
Confidence 68999984 4567776664
No 61
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=26.25 E-value=1.4e+02 Score=20.57 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=26.1
Q ss_pred CCCeEEEEEecCHHHHHHHHHHHHhhhccCC
Q 031642 121 QGPLIISFEGKDQARIEAAIESLFKKFHRGA 151 (156)
Q Consensus 121 ~g~~~lVvRG~D~~~l~aA~~~l~~~~~~~~ 151 (156)
++.|.|++.+.|.+.+.+.++.+.+.+.+..
T Consensus 93 ~d~F~ill~~~~~~~~~~~~~~i~~~~~~~~ 123 (177)
T 3hva_A 93 DSIFAALFKGKTPEQAQAALQRLLKKVENHL 123 (177)
T ss_dssp SSEEEEEEETCCHHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHHHHHhCc
Confidence 4568999999999999999999998887533
No 62
>3ccd_A Phosphocarrier protein HPR; succinimide, isoaspartate, protein damage, autophosphatase, transferase; 1.00A {Escherichia coli} PDB: 1cm3_A 1cm2_A 1ggr_B 1hdn_A 1j6t_B 1pfh_A* 1poh_A 1vrc_C 2jel_P 2xdf_C 3eza_B 3ezb_B 3eze_B 1opd_A
Probab=25.59 E-value=1.5e+02 Score=19.81 Aligned_cols=64 Identities=23% Similarity=0.284 Sum_probs=39.0
Q ss_pred eEEEEEEecCCchh---hhhhHHHHHHhCC-Cceee--ccccccC------------C-CeEEEEEecCHHHHHHHHHHH
Q 031642 83 YTSKSLTTNLSDLE---AAQPLSKLCLEFP-DLHIG--CYRKSRQ------------G-PLIISFEGKDQARIEAAIESL 143 (156)
Q Consensus 83 ~~S~tv~~~~~Eg~---IA~~L~~Iq~~~P-dv~IG--SYP~~~~------------g-~~~lVvRG~D~~~l~aA~~~l 143 (156)
|.++++....+.|- -|..|-+++++|+ ++.|- .+.-.-. | .+.|.+.|.|++ +|.++|
T Consensus 1 M~~~~v~i~n~~GlHARpAa~~v~~a~~f~s~I~i~~~~~~vnaKSim~lm~Lg~~~G~~i~i~~~G~De~---~A~~~l 77 (85)
T 3ccd_A 1 MFEQEVTITAPNGLDTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQ---KAVEHL 77 (85)
T ss_dssp CEEEEEECCSTTCSCHHHHHHHHHHHTTSCSEEEEEETTEEEETTCHHHHTTSCCCTTCEEEEEEESTTHH---HHHHHH
T ss_pred CcEEEEEEcCCCCccHHHHHHHHHHHhhCCCeEEEEECCEEEehHhHHHHHhCCCCCCCEEEEEEeCCCHH---HHHHHH
Confidence 46778888777773 3666777788884 55553 2221000 1 245899999975 456666
Q ss_pred Hhhhcc
Q 031642 144 FKKFHR 149 (156)
Q Consensus 144 ~~~~~~ 149 (156)
.+++..
T Consensus 78 ~~~~~~ 83 (85)
T 3ccd_A 78 VKLMAE 83 (85)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 666653
No 63
>3iuu_A MLRC-like, putative metallopeptidase; YP_676511.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 2.13A {Mesorhizobium SP}
Probab=25.57 E-value=2.2e+02 Score=25.53 Aligned_cols=84 Identities=12% Similarity=0.032 Sum_probs=52.6
Q ss_pred HHHHHHHhHHhCCCccCCceEEEEEEecC---Cc--------hhhhhhHHHHHHhCCCc---ee-eccccccC--CCeEE
Q 031642 64 EWNCLIELLRSGGLSLMEPYTSKSLTTNL---SD--------LEAAQPLSKLCLEFPDL---HI-GCYRKSRQ--GPLII 126 (156)
Q Consensus 64 Ml~~l~p~L~~G~L~~gap~~S~tv~~~~---~E--------g~IA~~L~~Iq~~~Pdv---~I-GSYP~~~~--g~~~l 126 (156)
-.+-|..+|+++ .+....-.++.+ .| -.|-+.+.++.++ |+| || .-||+.+. -+..+
T Consensus 173 aa~lL~~~l~~~-----~rp~~a~~~~P~l~~~~~~T~~eP~~~l~~~~~~~E~~-~gVl~~S~~~GFp~aD~p~~G~~V 246 (495)
T 3iuu_A 173 AMTLLDSLSNET-----RPPRAIYSLIPFLTRGNDETWSGPLAEIGAAADRWRAR-SDVVDLSIFNVHPFLDVPGYGQVV 246 (495)
T ss_dssp HHHHHHHTTTCS-----SCCEEEEEEECBCCBSCCCSSSSHHHHHHHHHHHHHTS-TTCCEEEEECCCTTCCCSSCSEEE
T ss_pred HHHHHHHHHhCC-----CCceEEEecCCEEcccCCCCchhHHHHHHHHHHHHhcc-CCeEEEEEEcCcccccCCCCCcEE
Confidence 445556665555 555454445442 22 1445556666544 554 32 66898762 35678
Q ss_pred EEEecCHHHHHHHHHHHHhhh--ccCCcc
Q 031642 127 SFEGKDQARIEAAIESLFKKF--HRGAFS 153 (156)
Q Consensus 127 VvRG~D~~~l~aA~~~l~~~~--~~~~f~ 153 (156)
++-+.|++..++++++|.+.+ .++.|.
T Consensus 247 vv~~~~~~~a~~~A~~La~~~w~~R~~f~ 275 (495)
T 3iuu_A 247 LAYDNGSGAAIDACRDLSDMLWKARDEFQ 275 (495)
T ss_dssp EEEESSSSSHHHHHHHHHHHHHHTGGGSB
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhHHhcC
Confidence 888999999999999998877 556654
No 64
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=24.97 E-value=80 Score=22.43 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=35.7
Q ss_pred HHHHHHhCCCceeeccccccCCC----eEEEEEecCHHHHHHHHHHHHhhhccCCcccc
Q 031642 101 LSKLCLEFPDLHIGCYRKSRQGP----LIISFEGKDQARIEAAIESLFKKFHRGAFSEV 155 (156)
Q Consensus 101 L~~Iq~~~Pdv~IGSYP~~~~g~----~~lVvRG~D~~~l~aA~~~l~~~~~~~~f~~~ 155 (156)
+..+.++++++.+-..|+.. .. +.+.++-.|++.+++--++|.++-+.|.+.++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i 226 (242)
T 3del_B 169 AQVVLKDFPALSTATIDLPE-DQWVLGYGIGVASDRPALALKIEAAVQEIRKEGVLAEL 226 (242)
T ss_dssp HHHHGGGCTTEEEEEEECCG-GGCEEEEEEEEETTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHhCCCeEEecCccCc-ccccceEEEEEeCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 33455567776665544332 23 67888888888777777777777777877654
No 65
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=24.95 E-value=47 Score=24.68 Aligned_cols=24 Identities=4% Similarity=0.212 Sum_probs=19.8
Q ss_pred eEEEecCCCCchH-HHHHHHHHHhHHh
Q 031642 49 NVIILTATNVTEL-DKEWNCLIELLRS 74 (156)
Q Consensus 49 NV~VMAGV~VP~I-~aMl~~l~p~L~~ 74 (156)
.||.|+| .|.- +.||+-+.|.|+.
T Consensus 135 ~v~~LPG--~P~~~~~~~~~v~P~L~~ 159 (167)
T 2g2c_A 135 LIVNAPS--SSGGITDTWAVISPVIPN 159 (167)
T ss_dssp EEEEECS--SHHHHHHHHHHHGGGHHH
T ss_pred EEEECCC--CHHHHHHHHHHHHHHHHH
Confidence 4999999 6985 7799988898754
No 66
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=24.55 E-value=59 Score=22.41 Aligned_cols=58 Identities=10% Similarity=-0.046 Sum_probs=29.1
Q ss_pred CeEEEecCCCCchH-HHHHHHHHHhHHhCCCccCCceEEEEEEecCCchhhhhhHHHHHHhCCCceeeccc
Q 031642 48 QNVIILTATNVTEL-DKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYR 117 (156)
Q Consensus 48 gNV~VMAGV~VP~I-~aMl~~l~p~L~~G~L~~gap~~S~tv~~~~~Eg~IA~~L~~Iq~~~Pdv~IGSYP 117 (156)
|.+.|.+. |.+ ...+..++..++.- .|=+.-.+.. +.-.+.+.++.+.-=|+-|...|
T Consensus 5 g~l~Ig~~---~~~~~~~l~~~l~~f~~~-----~P~i~i~l~~----~~~~~l~~~l~~g~~Dl~i~~~~ 63 (209)
T 2ql3_A 5 GPIAVGCY---PALGPTILPSMLYAFTAE-----YPRASVEFRE----DTQNRLRTQLEGGELDVAIVYDL 63 (209)
T ss_dssp EEEEEEEC---GGGTTTTHHHHHHHHHHH-----CTTEEEEEEE----CCHHHHHHHHHTTSCSEEEEESS
T ss_pred eeEEEeec---hhhhhhhHHHHHHHHHHH-----CCCceEEEEE----CcHHHHHHHHHcCCccEEEEecC
Confidence 34445433 444 33455555555444 5655555443 33344455666665566665544
No 67
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}
Probab=24.46 E-value=2.5e+02 Score=24.13 Aligned_cols=81 Identities=11% Similarity=0.064 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhHHhCCCccCCceEEEEEEecCCc-hhhhhhHHHHHH--hCCCceeecccccc-CCC-----e---EEEE
Q 031642 61 LDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSD-LEAAQPLSKLCL--EFPDLHIGCYRKSR-QGP-----L---IISF 128 (156)
Q Consensus 61 I~aMl~~l~p~L~~G~L~~gap~~S~tv~~~~~E-g~IA~~L~~Iq~--~~Pdv~IGSYP~~~-~g~-----~---~lVv 128 (156)
+.+.++.|.+.++.| +-++..| +...+- -++++.|.+... .+-|..+++-|.+. +|. . .+++
T Consensus 114 v~~~~~~i~~~l~~g-----~iVV~~S-Tv~~gt~~~l~~~l~~~~~~~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~ivi 187 (481)
T 2o3j_A 114 VESVSRTIAQYAGGP-----KIVVEKS-TVPVKAAESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLI 187 (481)
T ss_dssp HHHHHHHHHHHCCSC-----EEEEECS-CCCTTHHHHHHHHHHHHTC----CCEEEEECCCCCCTTCHHHHHHSCSCEEE
T ss_pred HHHHHHHHHHhCCCC-----CEEEECC-CCCCCHHHHHHHHHHHhhCcCcCCceEEEeCcccccccchhhcccCCCEEEE
Confidence 566677787775555 6665543 222211 124444433111 12455688888765 443 1 3666
Q ss_pred EecCHHHHHHHHHHHHhhh
Q 031642 129 EGKDQARIEAAIESLFKKF 147 (156)
Q Consensus 129 RG~D~~~l~aA~~~l~~~~ 147 (156)
=|.+.+.-+++.+.+++++
T Consensus 188 G~~~~~~~~~a~~~l~~l~ 206 (481)
T 2o3j_A 188 GGESSPEGLQAVAELVRIY 206 (481)
T ss_dssp EECSSHHHHHHHHHHHHHH
T ss_pred EecCchhhHHHHHHHHHHH
Confidence 6666544344444444444
No 68
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=23.65 E-value=1.2e+02 Score=21.77 Aligned_cols=47 Identities=9% Similarity=-0.002 Sum_probs=31.0
Q ss_pred CCceeeccccccCCCeEEEEEecCHHHHHHHHHHHHhhhccCCcccc
Q 031642 109 PDLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHRGAFSEV 155 (156)
Q Consensus 109 Pdv~IGSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~~~~~~~f~~~ 155 (156)
+++.+=..|.+....+.+.++-.|++.+++--++|.++-+.|.+.++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~G~~~~i 211 (232)
T 3i6v_A 165 GELMFVGDDVPLGGGVGMGLRESDGELRGKFDAAITSMKEDGTLNTM 211 (232)
T ss_dssp TSSEEEEEEEECSSCEEEEECTTCHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred CCeEEecCCCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCChHHHH
Confidence 66665554444445677888866777777777777777777776554
No 69
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=23.64 E-value=1.9e+02 Score=20.03 Aligned_cols=62 Identities=11% Similarity=0.126 Sum_probs=45.2
Q ss_pred EEEecCCchhhhhhHHHHHHhCCCceeeccccccC--CCeEEEEEec---CH-HHHHHHHHHHHhhhc
Q 031642 87 SLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQ--GPLIISFEGK---DQ-ARIEAAIESLFKKFH 148 (156)
Q Consensus 87 tv~~~~~Eg~IA~~L~~Iq~~~Pdv~IGSYP~~~~--g~~~lVvRG~---D~-~~l~aA~~~l~~~~~ 148 (156)
++...--+=.++..|+..-.+.|+|.+=.|---.+ ..+.|.++-. ++ +.|.+|.++|.+.+.
T Consensus 14 ~f~i~~EDHTLgN~Lr~~L~~~p~V~fagY~vpHPl~~~~~lrIqT~~~~~p~~al~~a~~~l~~~~~ 81 (92)
T 2pa8_L 14 ELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIENIRGMTS 81 (92)
T ss_dssp EEEEETCCHHHHHHHHHHHHTSTTEEEEEEECSSTTSCCEEEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCchhHHHHHHHHHhcCCCeeEEEeecCCCCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 44444556679999999999999999999976443 3455555544 44 688888888887664
No 70
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=23.11 E-value=1.9e+02 Score=21.49 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=42.6
Q ss_pred EEEEEEec---CCchhhhhhHHHHHHhCCCceeeccc--cccCC-Ce-EEEEEecCHHHHHHHHHHHHhh
Q 031642 84 TSKSLTTN---LSDLEAAQPLSKLCLEFPDLHIGCYR--KSRQG-PL-IISFEGKDQARIEAAIESLFKK 146 (156)
Q Consensus 84 ~S~tv~~~---~~Eg~IA~~L~~Iq~~~Pdv~IGSYP--~~~~g-~~-~lVvRG~D~~~l~aA~~~l~~~ 146 (156)
.||+|... +.=|-|...|+.|.+.-=+-.|=-+- +.++. .. .|.|.|.|.+.|++-+.+|..+
T Consensus 2 ~sr~IeL~GHLiDSgil~~~LD~I~d~GG~F~I~~f~vG~~k~d~SyA~l~V~a~d~e~L~~Il~~L~~l 71 (118)
T 3mgj_A 2 FMREIELRGHIIDSLILPKVFDKILDMGGDYKVLEFEIGKRKTDPSYAKILVIGRDERHVDEILNELRDL 71 (118)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHHTTCEEEEEEEECCSSTTSCEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEeechhhHHHHHHHHHhcCCCEEEEEEecCCCCCCcceEEEEEecCCHHHHHHHHHHHHHc
Confidence 46777765 46677888898888865333322211 01212 23 4999999999999999999875
No 71
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=22.98 E-value=57 Score=24.13 Aligned_cols=24 Identities=8% Similarity=0.158 Sum_probs=19.6
Q ss_pred eEEEecCCCCchH-HHHHHHHHHhHHh
Q 031642 49 NVIILTATNVTEL-DKEWNCLIELLRS 74 (156)
Q Consensus 49 NV~VMAGV~VP~I-~aMl~~l~p~L~~ 74 (156)
.||.|+| .|.- +.||+.+.|.|+.
T Consensus 124 ~v~~LPG--~P~~~~~~~~~v~p~l~~ 148 (164)
T 2is8_A 124 LILNLPG--SPKGARESLEAVLPVLPH 148 (164)
T ss_dssp EEEEECS--SHHHHHHHHHHHGGGHHH
T ss_pred EEEECCC--CHHHHHHHHHHHHHHHHH
Confidence 5999999 6885 7788889888754
No 72
>1ptf_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 1.60A {Enterococcus faecalis} SCOP: d.94.1.1 PDB: 1qfr_A 1fu0_A*
Probab=22.91 E-value=74 Score=21.60 Aligned_cols=68 Identities=15% Similarity=0.278 Sum_probs=38.4
Q ss_pred eEEEEEEecCCchhh---hhhHHHHHHhCC-Cceeec--cccccC------------C-CeEEEEEecCHHHHHHHHHHH
Q 031642 83 YTSKSLTTNLSDLEA---AQPLSKLCLEFP-DLHIGC--YRKSRQ------------G-PLIISFEGKDQARIEAAIESL 143 (156)
Q Consensus 83 ~~S~tv~~~~~Eg~I---A~~L~~Iq~~~P-dv~IGS--YP~~~~------------g-~~~lVvRG~D~~~l~aA~~~l 143 (156)
|.++++....+.|-= |..|-+++.+|+ ++.|-+ +.-.-. | .+.|.+.|.|+++ |.++|
T Consensus 1 M~~~~v~i~~~~GLHARpAa~~v~~a~~f~s~I~i~~~~~~vnaKSim~lm~L~~~~g~~i~i~~~G~De~~---A~~~l 77 (88)
T 1ptf_A 1 MEKKEFHIVAETGIHARPATLLVQTASKFNSDINLEYKGKSVNLKSIMGVMSLGVGQGSDVTITVDGADEAE---GMAAI 77 (88)
T ss_dssp CEEEEEECCCTTCSCHHHHHHHHHHHTTCSSEEEEEETTEEEETTCHHHHHHHCCCTTCEEEEEEESTTHHH---HHHHH
T ss_pred CcEEEEEECCCCCcCHHHHHHHHHHHhhCCCeEEEEECCEEEehHhHHHHHhcCCCCCCEEEEEEeCCCHHH---HHHHH
Confidence 457777777666644 445666677884 555532 221000 1 1358899999764 55555
Q ss_pred HhhhccCCcc
Q 031642 144 FKKFHRGAFS 153 (156)
Q Consensus 144 ~~~~~~~~f~ 153 (156)
.+++...-|-
T Consensus 78 ~~l~~~~~~g 87 (88)
T 1ptf_A 78 VETLQKEGLA 87 (88)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCC
Confidence 5555533354
No 73
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=22.46 E-value=93 Score=22.32 Aligned_cols=55 Identities=9% Similarity=0.087 Sum_probs=34.3
Q ss_pred HHHHHHhCCCceeeccccccCC---CeEEEEEecCHHHHHHHHHHHHhhhccCCcccc
Q 031642 101 LSKLCLEFPDLHIGCYRKSRQG---PLIISFEGKDQARIEAAIESLFKKFHRGAFSEV 155 (156)
Q Consensus 101 L~~Iq~~~Pdv~IGSYP~~~~g---~~~lVvRG~D~~~l~aA~~~l~~~~~~~~f~~~ 155 (156)
+....+++|++.+=..|+.... ++.+.++-.|++.+++--+.|.++-+.|.+.++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i 247 (268)
T 3qax_A 190 GRVVLKDFPNLVATRLELPPECWVLGCGLGVAKDRPEEIQTIQQAITDLKSEGVIQSL 247 (268)
T ss_dssp HHHHGGGCTTEEEEEEECCGGGCBCCEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHhCCCcEEecCccCcccccccEEEEEeCCCHHHHHHHHHHHHHHHHCCcHHHH
Confidence 3445566777666554433221 267888877877777777777776666766543
No 74
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=22.45 E-value=24 Score=20.21 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=16.2
Q ss_pred CchhhhhhHHHHHHhCCC
Q 031642 93 SDLEAAQPLSKLCLEFPD 110 (156)
Q Consensus 93 ~Eg~IA~~L~~Iq~~~Pd 110 (156)
+|--||+.|++|-++|-.
T Consensus 4 PE~~iAqELRRIGDeFN~ 21 (26)
T 2wh6_B 4 PEIWIAQELRRIGDEFNA 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhHHHhh
Confidence 688899999999999976
No 75
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=22.32 E-value=1.2e+02 Score=21.29 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=36.3
Q ss_pred EEEecCCCCchHHHHHHHHHHhHHhCCCccCCceEEEEEEecCCchhhhhhHHHHHHhCCCceeeccccccCCCeEEEEE
Q 031642 50 VIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPLIISFE 129 (156)
Q Consensus 50 V~VMAGV~VP~I~aMl~~l~p~L~~G~L~~gap~~S~tv~~~~~Eg~IA~~L~~Iq~~~Pdv~IGSYP~~~~g~~~lVvR 129 (156)
+++.-+ .=+|.++++.+...+... .|+.-..=-++..|--+-..|++|.+.+.+- ...|.+.||+.
T Consensus 46 lVfyes--p~Rl~~~l~~L~~~~g~~-----~~v~v~relTk~~E~~~rgtl~el~~~~~~~-------~~kGe~vivv~ 111 (115)
T 3ffy_A 46 MVFYES--PHRLLKTLTQFAEYFGPE-----RQVSVSREISKIHEETVRGTLSELIEHFTAT-------DPRGEIVIVLA 111 (115)
T ss_dssp EEEEEC--TTTHHHHHHHHHHHHCTT-----CEEEEEEESSSSCEEEEEEEHHHHHHHHHHS-------CCCSSEEEEEC
T ss_pred EEEEec--hHHHHHHHHHHHHhcCCC-----CEEEeeeccCCCceEEEEeeHHHHHHHHHhc-------CCCCCEEEEEe
Confidence 444555 134777888887764212 5543333224455655555566655544221 11366788887
Q ss_pred ecC
Q 031642 130 GKD 132 (156)
Q Consensus 130 G~D 132 (156)
|.|
T Consensus 112 ~~~ 114 (115)
T 3ffy_A 112 GID 114 (115)
T ss_dssp CC-
T ss_pred CCC
Confidence 765
No 76
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=22.25 E-value=1.1e+02 Score=22.37 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=24.1
Q ss_pred CCeEEEEEecCHHHHHHHHHHHHhhhcc
Q 031642 122 GPLIISFEGKDQARIEAAIESLFKKFHR 149 (156)
Q Consensus 122 g~~~lVvRG~D~~~l~aA~~~l~~~~~~ 149 (156)
....+.+-+.|.+.+++|.+.+.+++.+
T Consensus 72 e~lhV~I~a~~~e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 72 EPLHALVTANTMENVKKAVEQIRNILKQ 99 (131)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 3567888999999999999999998853
No 77
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=22.04 E-value=1.5e+02 Score=24.84 Aligned_cols=80 Identities=9% Similarity=0.088 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhHHh---CCCccCCceEEEEEEecCC--chhhhhhHHHH-HHhC-CCceeecccccc-CCCe--------
Q 031642 61 LDKEWNCLIELLRS---GGLSLMEPYTSKSLTTNLS--DLEAAQPLSKL-CLEF-PDLHIGCYRKSR-QGPL-------- 124 (156)
Q Consensus 61 I~aMl~~l~p~L~~---G~L~~gap~~S~tv~~~~~--Eg~IA~~L~~I-q~~~-Pdv~IGSYP~~~-~g~~-------- 124 (156)
+.+.++.+.+.++. | +.++..+ ....+ +-.+++.|.+. ...+ -+..+.+-|.+. +|..
T Consensus 99 v~~v~~~i~~~l~~~~~~-----~iVV~~S-tv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~Pe~~~~G~~~~~~~~~~ 172 (436)
T 1mv8_A 99 IETVCREIGFAIREKSER-----HTVVVRS-TVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPP 172 (436)
T ss_dssp HHHHHHHHHHHHTTCCSC-----CEEEECS-CCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCCTTSHHHHHHSCS
T ss_pred HHHHHHHHHHHhcccCCC-----cEEEEeC-CcCCCchHHHHHHHHHHhcCcccCCcEEEEECcccccccccchhccCCC
Confidence 77777888888766 5 6665443 12221 22334444332 1112 355666667655 4432
Q ss_pred EEEEEecCHHHHHHHHHHHHhhh
Q 031642 125 IISFEGKDQARIEAAIESLFKKF 147 (156)
Q Consensus 125 ~lVvRG~D~~~l~aA~~~l~~~~ 147 (156)
.+++=+.|++..+. ++++.+.+
T Consensus 173 ~iv~G~~~~~~~~~-~~~l~~~~ 194 (436)
T 1mv8_A 173 MTVIGELDKQTGDL-LEEIYREL 194 (436)
T ss_dssp CEEEEESSHHHHHH-HHHHHTTS
T ss_pred EEEEEcCCHHHHHH-HHHHHhcc
Confidence 45555555554443 34444433
No 78
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=21.89 E-value=2e+02 Score=23.14 Aligned_cols=81 Identities=12% Similarity=0.091 Sum_probs=43.9
Q ss_pred eEEEecCCCCch--HHHHHHHHHHhHHhCCCccCCceEEEEEEecCCchhhhhhHHHHHHhCCCceeeccccccC-----
Q 031642 49 NVIILTATNVTE--LDKEWNCLIELLRSGGLSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQ----- 121 (156)
Q Consensus 49 NV~VMAGV~VP~--I~aMl~~l~p~L~~G~L~~gap~~S~tv~~~~~Eg~IA~~L~~Iq~~~Pdv~IGSYP~~~~----- 121 (156)
.|+|++= |. +...++.+.+.++.| +-+++. +... +. .++++++..|+--||..|.+-.
T Consensus 96 DvVilav---p~~~~~~vl~~l~~~l~~~-----~iv~d~---~Svk-~~---~~~~~~~~l~~~~v~~hPm~G~e~sG~ 160 (314)
T 3ggo_A 96 DFVMLSS---PVRTFREIAKKLSYILSED-----ATVTDQ---GSVK-GK---LVYDLENILGKRFVGGHPIAGTEKSGV 160 (314)
T ss_dssp SEEEECS---CGGGHHHHHHHHHHHSCTT-----CEEEEC---CSCC-TH---HHHHHHHHHGGGEECEEECCCCCCCSG
T ss_pred CEEEEeC---CHHHHHHHHHHHhhccCCC-----cEEEEC---CCCc-HH---HHHHHHHhcCCCEEecCcccCCcccch
Confidence 4566653 44 466888888886555 544332 2222 22 3444444444466888887631
Q ss_pred ---------CCeEEEEE--ecCHHHHHHHHHHHH
Q 031642 122 ---------GPLIISFE--GKDQARIEAAIESLF 144 (156)
Q Consensus 122 ---------g~~~lVvR--G~D~~~l~aA~~~l~ 144 (156)
|...++.. +.|++.++.+.+-++
T Consensus 161 ~~A~~~Lf~g~~~il~~~~~~~~~~~~~v~~l~~ 194 (314)
T 3ggo_A 161 EYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWE 194 (314)
T ss_dssp GGCCTTTTTTCEEEECCCTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhcCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 22334443 567777776554443
No 79
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=21.87 E-value=1.8e+02 Score=21.27 Aligned_cols=21 Identities=10% Similarity=-0.023 Sum_probs=11.6
Q ss_pred CchhhhhhHHHHHHhCCCcee
Q 031642 93 SDLEAAQPLSKLCLEFPDLHI 113 (156)
Q Consensus 93 ~Eg~IA~~L~~Iq~~~Pdv~I 113 (156)
...-+...|.+++++||++.|
T Consensus 102 ~~~~l~~~l~~f~~~~P~i~l 122 (294)
T 1ixc_A 102 IYRSLPLLLRAFLTSTPTATV 122 (294)
T ss_dssp GGTHHHHHHHHHHHHCTTEEE
T ss_pred hHHHHHHHHHHHHHHCCCcEE
Confidence 344455556666666665544
No 80
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=21.77 E-value=1.6e+02 Score=23.98 Aligned_cols=83 Identities=12% Similarity=0.096 Sum_probs=46.0
Q ss_pred CCceeee-ccCCCCceeeCCCcccceeEeC------eEEEecCCCCchHHHHHHHHHHhHHhCCCccCCceEEEEEEecC
Q 031642 20 YPRWLCC-RKVPPNCCITTSCSYLWYIKCQ------NVIILTATNVTELDKEWNCLIELLRSGGLSLMEPYTSKSLTTNL 92 (156)
Q Consensus 20 ~~~~~~~-~~~~~~~~I~NpvS~APGF~ig------NV~VMAGV~VP~I~aMl~~l~p~L~~G~L~~gap~~S~tv~~~~ 92 (156)
.-+||+- -++-...-|..|.. +|.+. =|+|-+|+-++.+.+|++.+... | ...++. -+....
T Consensus 229 ~S~~L~~~l~~Gd~v~v~gP~G---~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~---~---~~~~v~--l~~~~r 297 (396)
T 1gvh_A 229 VSNWLHNHANVGDVVKLVAPAG---DFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKA---G---HTAQVN--WFHAAE 297 (396)
T ss_dssp HHHHHHHTCCTTCEEEEEEEEC---SCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHH---T---CCSCEE--EEEEES
T ss_pred chHHHHhcCCCCCEEEEEcCCc---ceECCCCCCCCEEEEecchhHhHHHHHHHHHHhc---C---CCCcEE--EEEEeC
Confidence 3456653 33333334444443 34443 26777776677778888888753 2 012321 122333
Q ss_pred Cchh--hhhhHHHHHHhCCCcee
Q 031642 93 SDLE--AAQPLSKLCLEFPDLHI 113 (156)
Q Consensus 93 ~Eg~--IA~~L~~Iq~~~Pdv~I 113 (156)
.+.+ ..+.|.++++++|++.+
T Consensus 298 ~~~~~~~~~el~~l~~~~~~~~~ 320 (396)
T 1gvh_A 298 NGDVHAFADEVKELGQSLPRFTA 320 (396)
T ss_dssp CTTTCCSHHHHHHHHHTSSSEEE
T ss_pred CHHHhhhHHHHHHHHHHCCCeEE
Confidence 3333 46789999999997654
No 81
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=21.57 E-value=77 Score=22.73 Aligned_cols=50 Identities=6% Similarity=0.030 Sum_probs=31.8
Q ss_pred hhHHHHHHhCC-CceeeccccccCCCeEEEEEecCHHHHHHHHHHHHhhhcc
Q 031642 99 QPLSKLCLEFP-DLHIGCYRKSRQGPLIISFEGKDQARIEAAIESLFKKFHR 149 (156)
Q Consensus 99 ~~L~~Iq~~~P-dv~IGSYP~~~~g~~~lVvRG~D~~~l~aA~~~l~~~~~~ 149 (156)
.-+.+|+++.- .+.|-.-+......-.+.+.| +.+.+++|.+.+.+++.+
T Consensus 109 ~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 109 CKIKEIRESTGAQVQVAGDMLPNSTERAITIAG-IPQSIIECVKQICVVMLE 159 (160)
T ss_dssp HHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEE-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeEEECCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhc
Confidence 34667777752 244422111111223589999 899999999999988764
No 82
>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1
Probab=21.17 E-value=1e+02 Score=21.71 Aligned_cols=71 Identities=15% Similarity=0.130 Sum_probs=41.2
Q ss_pred CchH-HHHHHHHHHhHHhCC--CccCCceEEEEEEec-CCch-hhhhh---HHHHHHhCCCceeeccccccCCCeEEEEE
Q 031642 58 VTEL-DKEWNCLIELLRSGG--LSLMEPYTSKSLTTN-LSDL-EAAQP---LSKLCLEFPDLHIGCYRKSRQGPLIISFE 129 (156)
Q Consensus 58 VP~I-~aMl~~l~p~L~~G~--L~~gap~~S~tv~~~-~~Eg-~IA~~---L~~Iq~~~Pdv~IGSYP~~~~g~~~lVvR 129 (156)
.|.+ ....+.++..|..-| +..+..-+.|+.... ..+. ++... +.+-...|||++++ | +.+.|.+.
T Consensus 7 ~~~Ls~~ei~~~L~~l~~~gW~~~~~~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~~-y-----~~V~v~l~ 80 (105)
T 1ru0_A 7 AQWLTAEERDQLIPGLKAAGWSELSERDAIYKEFSFKNFNQAFGFMSRVALQAEKMNHHPEWFNV-Y-----NKVQITLT 80 (105)
T ss_dssp CSBCCHHHHHHHHHHHHHTTCEECSSSSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEE-T-----TEEEEEEC
T ss_pred CCCCCHHHHHHHHHhCCCCCCeEECCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEEe-C-----CEEEEEEE
Confidence 4567 667777777764222 323344678888765 4554 13333 44444569999875 3 34666665
Q ss_pred ecCHH
Q 031642 130 GKDQA 134 (156)
Q Consensus 130 G~D~~ 134 (156)
.-|..
T Consensus 81 THd~g 85 (105)
T 1ru0_A 81 SHDCG 85 (105)
T ss_dssp BTTTT
T ss_pred eCCCC
Confidence 55543
No 83
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=21.16 E-value=1e+02 Score=22.15 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=34.5
Q ss_pred HHHHhCCCceeeccccccC--CCeEEEEEecCHHHHHHHHHHHHhhhccCCcccc
Q 031642 103 KLCLEFPDLHIGCYRKSRQ--GPLIISFEGKDQARIEAAIESLFKKFHRGAFSEV 155 (156)
Q Consensus 103 ~Iq~~~Pdv~IGSYP~~~~--g~~~lVvRG~D~~~l~aA~~~l~~~~~~~~f~~~ 155 (156)
...+++|+..+-..++... ..+.+.++-.+++.+++--+.|.++-..|.+.++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i 258 (269)
T 4i62_A 204 GFVENNPDLAIADLNFEKEQDDSYAVAMKKDSKELKEAVDKTIQKLKESGELDKL 258 (269)
T ss_dssp HHHHHCTTEEECSCCCCC-CCCEECCEEESSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHhCCCCeEEeeccCCCcccceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHH
Confidence 4455677777766664432 2356888888887777777777777677776654
No 84
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=20.81 E-value=1.3e+02 Score=22.16 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=11.1
Q ss_pred CchhhhhhHHHHHHhCCCcee
Q 031642 93 SDLEAAQPLSKLCLEFPDLHI 113 (156)
Q Consensus 93 ~Eg~IA~~L~~Iq~~~Pdv~I 113 (156)
...-+...|.+++++||++.|
T Consensus 106 ~~~~l~~~l~~f~~~~P~i~i 126 (306)
T 3fzv_A 106 APLYLPGLIAGFRQAYPGVEI 126 (306)
T ss_dssp HHHHHHHHHHHHHHHCTTEEE
T ss_pred hHHHHHHHHHHHHHHCCCeEE
Confidence 334445555556666665544
No 85
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=20.78 E-value=64 Score=23.00 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=7.7
Q ss_pred CCceeecccc
Q 031642 109 PDLHIGCYRK 118 (156)
Q Consensus 109 Pdv~IGSYP~ 118 (156)
-.+.||+||-
T Consensus 49 ~~~~LG~yp~ 58 (108)
T 3ju0_A 49 RLLALGVYPA 58 (108)
T ss_dssp EEEEEEEETT
T ss_pred EEEecCCCCC
Confidence 3578999994
No 86
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=20.77 E-value=2.4e+02 Score=20.29 Aligned_cols=53 Identities=9% Similarity=0.103 Sum_probs=40.7
Q ss_pred CCchhhhhhHHHHHHhCCCceeeccccccCCCe---EEEEEecCHHHHHHHHHHHHh
Q 031642 92 LSDLEAAQPLSKLCLEFPDLHIGCYRKSRQGPL---IISFEGKDQARIEAAIESLFK 145 (156)
Q Consensus 92 ~~Eg~IA~~L~~Iq~~~Pdv~IGSYP~~~~g~~---~lVvRG~D~~~l~aA~~~l~~ 145 (156)
-...++++.|.+||.+|-|+-+++.=..-+... .++++|. .+++.+-..+|.+
T Consensus 62 h~~~~l~~~l~~iqh~~~d~I~s~~hvhl~~~~clevivv~G~-~~~I~~l~~~l~~ 117 (133)
T 2hza_A 62 HEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGD-MGDVQHFADDVIA 117 (133)
T ss_dssp SSTTSHHHHHHHHHHHTTTTEEEEEEEECSSSEEEEEEEEEEE-HHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHhccCeEEEEeeEEcCCCcEEEEEEEEcC-HHHHHHHHHHHhc
Confidence 344789999999999999999999766544443 5999996 5567777777766
No 87
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J
Probab=20.73 E-value=1.1e+02 Score=21.20 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=23.4
Q ss_pred CeEEEEEecCHHHHHHHHHHHHhhhc
Q 031642 123 PLIISFEGKDQARIEAAIESLFKKFH 148 (156)
Q Consensus 123 ~~~lVvRG~D~~~l~aA~~~l~~~~~ 148 (156)
...|.++|.|...||++++++.+...
T Consensus 10 kirI~L~S~d~~~Ld~~~~~Iv~~ak 35 (87)
T 3d3c_J 10 RIRIRLKAFDHRLIDQATAEIVETAK 35 (87)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 56799999999999999999988775
No 88
>1szw_A TRNA pseudouridine synthase D; novel fold, RNA modification, TRUD, structural proteomics in europe, spine, structural genomics; 2.00A {Escherichia coli} SCOP: d.265.1.4 PDB: 1si7_A 1sb7_A
Probab=20.22 E-value=1.3e+02 Score=25.97 Aligned_cols=66 Identities=11% Similarity=0.182 Sum_probs=41.2
Q ss_pred CccCCceEEEEEEecCCchhhhhhHHHHHHhCCCceeeccccccC----C-----CeEEEEEec-CHHHHHHHHHHHHh
Q 031642 77 LSLMEPYTSKSLTTNLSDLEAAQPLSKLCLEFPDLHIGCYRKSRQ----G-----PLIISFEGK-DQARIEAAIESLFK 145 (156)
Q Consensus 77 L~~gap~~S~tv~~~~~Eg~IA~~L~~Iq~~~Pdv~IGSYP~~~~----g-----~~~lVvRG~-D~~~l~aA~~~l~~ 145 (156)
++.-.-+..+.+.+.++ +...+.|.++ +.+++.|+.+-+... | +|.|++|+. |.+.++++.+.|++
T Consensus 100 lKDk~AvT~Q~~sv~~p-~~~~~~l~~l--~~~~i~i~~~~~~~~kL~lG~L~GN~F~I~LR~v~~~~~i~~~l~~l~~ 175 (379)
T 1szw_A 100 QKDKHAVTEQWLCARVP-GKEMPDLSAF--QLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICV 175 (379)
T ss_dssp CCCTTSEEEEEEEEECC-SSCCCCGGGC--CCTTEEEEEEEEESSCCCTTCCCEEEEEEEEBSCSCHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEEEEEeC-CcChhhHHhc--ccCCeEEEEEEeecCCcCCccCCCCEEEEEEecCCCHHHHHHHHHHHHh
Confidence 66666677777765432 1112234333 478999998866432 2 467999986 56677777777754
No 89
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=20.04 E-value=1.7e+02 Score=21.52 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=11.8
Q ss_pred chhhhhhHHHHHHhCCCcee
Q 031642 94 DLEAAQPLSKLCLEFPDLHI 113 (156)
Q Consensus 94 Eg~IA~~L~~Iq~~~Pdv~I 113 (156)
..-+...|.+++++||++.|
T Consensus 105 ~~~l~~~l~~f~~~~P~v~i 124 (306)
T 3hhg_A 105 LHLLAPLAAKFNERYPHIRL 124 (306)
T ss_dssp HHTHHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHHHHHHHCCCeEE
Confidence 33455666666666666544
Done!