BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031643
         (156 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase
           Complexed With Galactose
          Length = 419

 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 22/129 (17%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           +  K +E+ G D + V    SP RI  +G H D+ GG V   +I  G         D +V
Sbjct: 34  LTEKFAEVFG-DTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKV 92

Query: 61  VLRSGQFD--GEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQS 118
            L S  F   G + F +DE+++    +                   W NY +G +  L+ 
Sbjct: 93  KLYSENFPKLGVIEFDLDEVEKKDGEL-------------------WSNYVKGMIVMLKG 133

Query: 119 RGNNLTQGI 127
            G  + +G 
Sbjct: 134 AGYEIDKGF 142


>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
           Horikoshi
 pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
           Horikoshii With Amp-Pnp And Galactose
 pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
           Horikoshii With Amp-Pn And Galactose
          Length = 350

 Score = 34.7 bits (78), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 23/100 (23%)

Query: 19  VVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEI 78
           V SP R+  +G H D+  G V  M IN  +          EV+L S  F  E +FS++++
Sbjct: 4   VKSPGRVNLIGEHTDYTYGYVMPMAIN--LYTKIEAEKHGEVILYSEHFGEERKFSLNDL 61

Query: 79  QQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQS 118
           ++                     E  W +Y +G  + L+ 
Sbjct: 62  RK---------------------ENSWIDYVKGIFWVLKE 80


>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
          Length = 482

 Score = 27.3 bits (59), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 66  QFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQ 125
              G+ + +++ ++Q    +++ H    SD  +++    WGNYA    +  Q        
Sbjct: 62  HLKGQNKDALECLEQAEEIIQQEH----SDKEEVRSLVTWGNYAWVYYHXDQLEEAQKYT 117

Query: 126 GIIGYIC 132
           G IG +C
Sbjct: 118 GKIGNVC 124


>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
           Ifit5
 pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
           5`-triphosphate Oligocytidine
 pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
           5`-triphosphate Oligouridine
 pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
           5`-triphosphate Oligoadenine
 pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
          Length = 482

 Score = 27.3 bits (59), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 66  QFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQ 125
              G+ + +++ ++Q    +++ H    SD  +++    WGNYA    +  Q        
Sbjct: 62  HLKGQNKDALECLEQAEEIIQQEH----SDKEEVRSLVTWGNYAWVYYHMDQLEEAQKYT 117

Query: 126 GIIGYIC 132
           G IG +C
Sbjct: 118 GKIGNVC 124


>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
          Complexed With Mn-Amppnp And N-Acetyl Glactosamine
 pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
          Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
          Phosphate
          Length = 478

 Score = 27.3 bits (59), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 19 VVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVP 54
          V +P R+  +G HID+ G +V  M + + +L+   P
Sbjct: 58 VRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEP 93


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,122,012
Number of Sequences: 62578
Number of extensions: 156726
Number of successful extensions: 368
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 365
Number of HSP's gapped (non-prelim): 8
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)