Query 031643
Match_columns 156
No_of_seqs 123 out of 1019
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:23:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02865 galactokinase 100.0 3.3E-36 7.1E-41 255.2 15.3 145 1-156 15-160 (423)
2 COG0153 GalK Galactokinase [Ca 100.0 4.3E-36 9.4E-41 248.7 13.3 131 3-156 11-144 (390)
3 PRK05322 galactokinase; Provis 100.0 6.7E-34 1.4E-38 239.4 15.1 133 2-156 7-141 (387)
4 PTZ00290 galactokinase; Provis 100.0 1.5E-33 3.3E-38 241.3 14.1 134 1-156 18-163 (468)
5 PLN02521 galactokinase 100.0 2E-32 4.3E-37 236.3 14.9 135 2-156 36-178 (497)
6 PRK05101 galactokinase; Provis 100.0 6.6E-32 1.4E-36 226.9 15.3 133 2-156 8-141 (382)
7 TIGR00131 gal_kin galactokinas 100.0 9.9E-32 2.2E-36 225.9 15.2 135 1-156 4-139 (386)
8 PRK00555 galactokinase; Provis 100.0 5.3E-31 1.1E-35 220.2 14.4 118 17-156 3-120 (363)
9 PRK03817 galactokinase; Provis 99.9 9E-26 1.9E-30 187.6 13.7 114 18-156 2-115 (351)
10 TIGR00549 mevalon_kin mevalona 99.9 2.5E-25 5.4E-30 178.4 9.4 107 21-156 1-107 (273)
11 KOG0631 Galactokinase [Carbohy 99.9 2.4E-24 5.2E-29 182.0 12.8 134 3-155 28-170 (489)
12 KOG1511 Mevalonate kinase MVK/ 99.9 3.9E-24 8.5E-29 174.8 11.1 137 17-156 5-160 (397)
13 PRK13412 fkp bifunctional fuco 99.9 1.1E-23 2.5E-28 191.7 12.7 126 12-156 605-755 (974)
14 TIGR01220 Pmev_kin_Gr_pos phos 99.9 2.4E-23 5.1E-28 173.8 12.9 122 18-156 2-133 (358)
15 PLN02677 mevalonate kinase 99.9 4.2E-23 9.2E-28 173.7 12.8 137 17-156 3-158 (387)
16 PF10509 GalKase_gal_bdg: Gala 99.9 6.9E-24 1.5E-28 130.9 5.9 52 2-55 1-52 (52)
17 COG1577 ERG12 Mevalonate kinas 99.8 1.8E-20 3.8E-25 153.3 9.5 109 18-156 2-112 (307)
18 PRK03926 mevalonate kinase; Pr 99.8 4.9E-20 1.1E-24 150.0 11.8 103 17-156 2-104 (302)
19 PTZ00298 mevalonate kinase; Pr 99.7 1.9E-16 4.2E-21 130.8 8.2 109 18-156 12-123 (328)
20 TIGR00154 ispE 4-diphosphocyti 99.6 1.4E-15 3E-20 124.0 11.2 105 18-156 3-115 (293)
21 PRK00128 ipk 4-diphosphocytidy 99.6 3.6E-15 7.9E-20 120.7 11.5 105 17-156 3-113 (286)
22 COG2605 Predicted kinase relat 99.6 1.2E-15 2.7E-20 122.8 7.4 109 17-156 2-118 (333)
23 PRK02534 4-diphosphocytidyl-2- 99.6 1.5E-14 3.3E-19 118.6 12.0 106 17-156 4-115 (312)
24 PRK00343 ipk 4-diphosphocytidy 99.3 2.6E-11 5.5E-16 98.0 10.5 101 17-156 7-116 (271)
25 TIGR01219 Pmev_kin_ERG8 phosph 99.1 7.1E-10 1.5E-14 95.3 11.6 127 19-156 2-169 (454)
26 PRK14611 4-diphosphocytidyl-2- 99.0 1.7E-09 3.7E-14 87.4 9.7 100 19-156 4-109 (275)
27 PRK03188 4-diphosphocytidyl-2- 98.8 3.6E-08 7.8E-13 80.4 9.2 104 19-156 3-112 (300)
28 PRK14608 4-diphosphocytidyl-2- 98.8 1.1E-07 2.3E-12 77.6 11.9 107 17-156 7-119 (290)
29 PRK14609 4-diphosphocytidyl-2- 98.8 8.6E-08 1.9E-12 77.4 10.5 50 104-156 62-111 (269)
30 PRK14616 4-diphosphocytidyl-2- 98.8 1.2E-07 2.5E-12 77.1 11.3 102 18-156 5-112 (287)
31 PRK01123 shikimate kinase; Pro 98.7 7.8E-08 1.7E-12 78.0 9.3 98 23-156 3-104 (282)
32 PRK14612 4-diphosphocytidyl-2- 98.7 1.3E-07 2.8E-12 76.5 10.5 102 19-156 5-112 (276)
33 TIGR01920 Shik_kin_archae shik 98.6 2.1E-07 4.5E-12 74.9 9.3 78 38-156 15-93 (261)
34 PRK14615 4-diphosphocytidyl-2- 98.6 9.2E-07 2E-11 72.4 11.9 104 17-156 7-117 (296)
35 PRK14614 4-diphosphocytidyl-2- 98.6 7.3E-07 1.6E-11 72.3 10.9 104 18-156 5-114 (280)
36 PLN02451 homoserine kinase 98.6 2.5E-07 5.3E-12 78.0 7.8 104 17-156 54-163 (370)
37 PRK14610 4-diphosphocytidyl-2- 98.5 1.7E-06 3.8E-11 70.3 10.5 103 17-156 4-113 (283)
38 PF00288 GHMP_kinases_N: GHMP 98.5 1.4E-07 3.1E-12 60.5 3.0 28 128-156 1-28 (67)
39 TIGR00144 beta_RFAP_syn beta-R 98.4 4.4E-06 9.6E-11 69.2 10.3 104 18-156 2-111 (324)
40 TIGR00191 thrB homoserine kina 98.3 2.3E-06 4.9E-11 70.0 7.9 46 109-156 63-109 (302)
41 PRK14613 4-diphosphocytidyl-2- 98.3 7.2E-06 1.6E-10 67.2 10.5 113 20-155 2-121 (297)
42 PRK00650 4-diphosphocytidyl-2- 98.3 7.1E-06 1.5E-10 67.1 9.9 48 106-156 61-109 (288)
43 COG1685 Archaeal shikimate kin 98.3 7.1E-06 1.5E-10 65.9 9.0 94 19-156 5-99 (278)
44 PRK04181 4-diphosphocytidyl-2- 98.2 1.2E-05 2.6E-10 64.7 9.6 31 125-156 85-115 (257)
45 PTZ00299 homoserine kinase; Pr 98.1 1.1E-05 2.3E-10 67.4 7.8 102 17-155 8-110 (336)
46 COG0083 ThrB Homoserine kinase 98.1 1.7E-05 3.7E-10 65.0 7.9 101 18-155 5-105 (299)
47 PRK01212 homoserine kinase; Pr 98.0 3.2E-05 7E-10 63.0 8.2 102 17-156 4-110 (301)
48 PRK05905 hypothetical protein; 97.8 0.00029 6.2E-09 56.8 9.8 43 111-156 72-115 (258)
49 TIGR01240 mevDPdecarb diphosph 97.7 7.2E-05 1.6E-09 61.6 5.3 48 107-156 67-114 (305)
50 KOG4644 L-fucose kinase [Carbo 97.2 0.0019 4E-08 56.7 8.4 37 9-46 565-608 (948)
51 COG1947 IspE 4-diphosphocytidy 97.0 0.011 2.3E-07 48.5 10.5 45 107-154 67-112 (289)
52 PLN02407 diphosphomevalonate d 97.0 0.0049 1.1E-07 51.6 8.3 29 127-156 104-134 (343)
53 KOG4519 Phosphomevalonate kina 96.9 0.0063 1.4E-07 50.8 8.5 52 18-69 4-62 (459)
54 COG3890 ERG8 Phosphomevalonate 96.9 0.005 1.1E-07 50.1 7.8 34 19-52 6-40 (337)
55 COG3407 MVD1 Mevalonate pyroph 96.6 0.013 2.8E-07 48.8 8.3 48 106-156 71-119 (329)
56 COG4542 PduX Protein involved 94.1 0.038 8.1E-07 44.6 2.5 30 125-155 82-111 (293)
57 COG1829 Predicted archaeal kin 93.6 0.36 7.8E-06 39.3 7.2 93 19-155 5-102 (283)
58 KOG2833 Mevalonate pyrophospha 89.1 1.1 2.5E-05 37.4 5.7 30 126-156 105-134 (395)
59 COG1907 Predicted archaeal sug 64.7 6.1 0.00013 32.7 2.6 30 125-155 70-99 (312)
60 KOG1537 Homoserine kinase [Ami 45.3 15 0.00033 30.2 1.9 25 126-151 94-118 (355)
61 PF14982 UPF0731: UPF0731 fami 34.9 16 0.00034 23.7 0.4 16 132-148 17-32 (79)
62 KOG0180 20S proteasome, regula 27.1 1E+02 0.0022 23.8 3.6 36 33-68 5-40 (204)
63 PF07830 PP2C_C: Protein serin 27.0 55 0.0012 21.8 2.0 16 134-150 61-76 (81)
64 PF13188 PAS_8: PAS domain; PD 23.2 1.3E+02 0.0028 17.6 3.2 23 3-26 1-23 (64)
65 PF02866 Ldh_1_C: lactate/mala 22.4 59 0.0013 24.0 1.7 21 6-33 13-33 (174)
66 CHL00030 rpl23 ribosomal prote 20.2 77 0.0017 21.6 1.7 30 1-30 35-64 (93)
No 1
>PLN02865 galactokinase
Probab=100.00 E-value=3.3e-36 Score=255.22 Aligned_cols=145 Identities=70% Similarity=1.118 Sum_probs=118.9
Q ss_pred ChhHHhhhhCCCCceeEEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCC
Q 031643 1 MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQ 80 (156)
Q Consensus 1 ~~~~f~~~fg~~p~~~~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~ 80 (156)
|++.|++.||.+|+...+++|||||||+|||+||+||+||||||+++|++++++++|+++++++.++++..+|++++.+.
T Consensus 15 l~~~F~~~fg~~p~~~~~~~APGRVnlIGEHtDYngG~VLp~AI~~~~~va~~~~~~~~i~v~s~~~~~~~~~~~~~~~~ 94 (423)
T PLN02865 15 IRERVAAMSGRNSGEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDPEVLLRSAQFEGEVRFRVDEIQH 94 (423)
T ss_pred HHHHHHHHhCCCcccceEEEcCcceecccccccCCCCeEEeEEeeccEEEEEEECCCCEEEEEECCCCCceEEecccccc
Confidence 35789999999997335799999999999999999999999999999999999999999999998886556677664321
Q ss_pred ccccccccccccccccchhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEecc-CCCCCCcchHHHHHHHhhhcC
Q 031643 81 PRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSD-NLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~i-P~~gaGLgSSAA~~Va~~~Al 156 (156)
+. . +. .-+..+...|.+|++|++..+.+.|..+++||++.|+|++ |+ |+|||||||++||++.|+
T Consensus 95 ~~------~---~~-~~~~~~~~~W~~Yv~gv~~~l~~~g~~~~~G~~~~v~g~vpP~-gsGLsSSAAl~va~~~al 160 (423)
T PLN02865 95 PI------A---NV-SSDSKEESNWGDYARGAVYALQSRGHALSQGITGYISGSEGLD-SSGLSSSAAVGVAYLLAL 160 (423)
T ss_pred cc------c---cc-cccCCCCCCHHHHHHHHHHHHHHcCCCCCCceEEEEECCCCCC-CCcccHHHHHHHHHHHHH
Confidence 00 0 00 0001355789999999999999888766469999999999 56 999999999999998764
No 2
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-36 Score=248.69 Aligned_cols=131 Identities=30% Similarity=0.455 Sum_probs=114.4
Q ss_pred hHHhhhhCC-CCceeEEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCe-eEEe-cCCCC
Q 031643 3 NKVSEMSGR-DAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGE-VRFS-IDEIQ 79 (156)
Q Consensus 3 ~~f~~~fg~-~p~~~~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~-~~~~-l~~l~ 79 (156)
..|.+.|+. +|+ ..++|||||||+||||||+||+|+|+|||++|++++++++|.++++++.+++.. ..+. .+++.
T Consensus 11 ~~f~~~f~~~~~~--~~~~aPGRvNLIGEHtDYn~G~VlP~Ain~~t~v~v~~r~d~~v~l~s~n~~~~~~~~~~~~d~~ 88 (390)
T COG0153 11 ALFAEHFGYVEPT--VTAFAPGRVNLIGEHTDYNGGFVLPCAINYGTYVAVAKRDDGKVRLYSANFGNAGDIFFLLLDIA 88 (390)
T ss_pred HHHHHHhcccCcc--eEecCCceEEeeccceeccCceEEEEEeecceEEEEEEccCceEEEEeCCCccccceeecchhhc
Confidence 568888986 776 679999999999999999999999999999999999999999999999998842 2333 33332
Q ss_pred CccccccccccccccccchhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 80 QPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
. .+..+|.+|++|++..++..|+.+ .|++++|.||||+ |+|||||||++||++.|+
T Consensus 89 ~-------------------~~~~~W~nYvkgvi~~l~~~g~~~-~G~~i~i~gnIP~-GaGLSSSAAleva~~~al 144 (390)
T COG0153 89 K-------------------EKIDDWANYVKGVIKALQKRGYAF-TGLDIVISGNIPI-GAGLSSSAALEVAVALAL 144 (390)
T ss_pred c-------------------cccchhhhhHHHHHHHHHhcCCCc-CCeeEEEecCCCC-CCCcCchHHHHHHHHHHH
Confidence 1 355899999999999999999999 6999999999997 999999999999999874
No 3
>PRK05322 galactokinase; Provisional
Probab=100.00 E-value=6.7e-34 Score=239.36 Aligned_cols=133 Identities=32% Similarity=0.483 Sum_probs=115.4
Q ss_pred hhHHhhhhCCCCceeEEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCC--eeEEecCCCC
Q 031643 2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG--EVRFSIDEIQ 79 (156)
Q Consensus 2 ~~~f~~~fg~~p~~~~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~--~~~~~l~~l~ 79 (156)
++.|++.||.+|+ .+++|||||+|+|||+||||++|||+||++++++++++++++++++.+.+++. ...+++++++
T Consensus 7 ~~~f~~~fg~~p~--~~~~APgRv~L~GEH~d~~g~~vl~~AI~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~~~~~~~~ 84 (387)
T PRK05322 7 KKKFAEVFGEEAE--DVFFSPGRINLIGEHTDYNGGHVFPAAITLGTYGAARKRDDKKVRLYSANFEDLGIIEFDLDDLS 84 (387)
T ss_pred HHHHHHHhCCCCc--eEEEcCceeEecccceeecCceeeeeeccceEEEEEEECCCCEEEEEECCCCCCceEEEeccccC
Confidence 4789999999997 57899999999999999999999999999999999999999999999888863 3455555533
Q ss_pred CccccccccccccccccchhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 80 QPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
. .....|.+|++|++..+...+.+++.||++.|.|+||+ |+|||||||++||++.|+
T Consensus 85 ~-------------------~~~~~w~~y~~gvi~~l~~~~~~~~~g~~i~i~s~iP~-gsGLgSSAA~~va~~~al 141 (387)
T PRK05322 85 F-------------------DKEDDWANYPKGVLKFLQEAGYKIDHGFDILIYGNIPN-GAGLSSSASIELLTGVIL 141 (387)
T ss_pred C-------------------CCccchHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCC-CCCccHHHHHHHHHHHHH
Confidence 1 24567999999999999887765446999999999997 999999999999998774
No 4
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=1.5e-33 Score=241.27 Aligned_cols=134 Identities=22% Similarity=0.357 Sum_probs=107.3
Q ss_pred ChhHHhhhhCCCCce----eEEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEc---CCCeEEEEeCCCCCeeEE
Q 031643 1 MRNKVSEMSGRDAEV----VRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPS---GDTEVVLRSGQFDGEVRF 73 (156)
Q Consensus 1 ~~~~f~~~fg~~p~~----~~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~---~d~~i~i~s~~~~~~~~~ 73 (156)
+++.|.+.||.+|+. .++++|||||||+||||||+||.||||||+++|+++++++ +++++++.+.. .. .|
T Consensus 18 l~~~F~~~fG~~p~~~~~~~~~~~APGRVnLIGEHtDYngG~VLp~AId~~~~va~~~~~~~~~~~i~~~~~~-~~--~~ 94 (468)
T PTZ00290 18 LKPIFLETFKVENDADVEWLLFTFAPGRVNFIGEHVDYMGGYVCPAAVLEGCHILVGRVKHFCDHKLRFATET-DE--HF 94 (468)
T ss_pred HHHHHHHHhCCCcccccceeEEEeccceeeecccccccCCCeeeeccccCcEEEEEeecCCCCCCeEEEEECC-Cc--ee
Confidence 468999999999951 2578999999999999999999999999999999999876 55778885543 32 34
Q ss_pred ecCCCCCccccccccccccccccchhccccchhhhHHHHHHH-HHHcCCCC----CCCEEEEEEeccCCCCCCcchHHHH
Q 031643 74 SIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYA-LQSRGNNL----TQGIIGYICGSDNLDSSGLSSSAAV 148 (156)
Q Consensus 74 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gv~~~-l~~~g~~~----~~g~~i~i~s~iP~~gaGLgSSAA~ 148 (156)
+++..... .....|.+|++|++.. +.+.|..+ ..||++.|.||||+ |+||||||||
T Consensus 95 ~~~~~~~~------------------~~~~~W~nYv~gv~~~~l~~~g~~~~~~~~~G~d~~i~gdVP~-GaGLSSSAAl 155 (468)
T PTZ00290 95 VLDHLGGA------------------KHNKAWTTFVRGAATLRLNRLGVAIDAPSLQGVCMVVHGTLPM-GAGMSASASF 155 (468)
T ss_pred ecCccccc------------------CCcccHHHHHHHHHHHHHHHhCCCcccCCCCCeEEEEeCCCCC-CCCcchHHHH
Confidence 44432110 2457899999999986 55567642 15999999999997 9999999999
Q ss_pred HHHhhhcC
Q 031643 149 SMSFPFNI 156 (156)
Q Consensus 149 ~Va~~~Al 156 (156)
+||++.|+
T Consensus 156 eva~~~al 163 (468)
T PTZ00290 156 GVALLNAI 163 (468)
T ss_pred HHHHHHHH
Confidence 99999764
No 5
>PLN02521 galactokinase
Probab=100.00 E-value=2e-32 Score=236.30 Aligned_cols=135 Identities=27% Similarity=0.371 Sum_probs=110.9
Q ss_pred hhHHhhhhCCCCceeEEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCC-CeEEEEeCCCCC-eeEEecCCCC
Q 031643 2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGD-TEVVLRSGQFDG-EVRFSIDEIQ 79 (156)
Q Consensus 2 ~~~f~~~fg~~p~~~~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d-~~i~i~s~~~~~-~~~~~l~~l~ 79 (156)
++.|++.||.+|+ ++++|||||||||||+|||||+|||+||+++++++++++++ +++++.+.+.+. ...++++...
T Consensus 36 ~~~F~~~fg~~p~--~~~~APGRVnLiGEHtDy~gg~vLp~AI~~~~~v~~~~~~~~~~i~i~s~~~~~~~~~~~~~~~~ 113 (497)
T PLN02521 36 KAAFVEVYGAKPD--LFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRRAEGSKKLRIANVNDKYTTCTFPADPDQ 113 (497)
T ss_pred HHHHHHHHCCCCC--EEEECCceEEEeccceeecCCeEEEEEEcCcEEEEEEEcCCCCEEEEEECCCCCCceeeecCccc
Confidence 5789999999997 67999999999999999999999999999999999999987 788998766542 2345544321
Q ss_pred CccccccccccccccccchhccccchhhhH----HHHHHHHHHcCCCC--CCCEEEEEEeccCCCCCCcchHHHHHHHhh
Q 031643 80 QPRNSVKKHHVVHASDSAKIKEECKWGNYA----RGALYALQSRGNNL--TQGIIGYICGSDNLDSSGLSSSAAVSMSFP 153 (156)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~----~gv~~~l~~~g~~~--~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~ 153 (156)
.. ......|.+|+ ++++..+.+.+..+ +.||++.|+|+||+ |+|||||||++||++
T Consensus 114 ~~-----------------~~~~~~W~nYv~~~~~gv~~~l~~~~~~~~~~~g~~i~i~s~IP~-gsGLgSSAA~~vA~~ 175 (497)
T PLN02521 114 EV-----------------DLANHKWGNYFICGYKGVFEFLKSKGVDVGPPVGLDVVVDGTVPT-GSGLSSSAALVCSAA 175 (497)
T ss_pred cc-----------------ccccccHHHHHHHHHHHHHHHHHHhccccCCCCCeEEEEecCCCC-CCCcchHHHHHHHHH
Confidence 10 12456799999 88898888766543 24999999999997 999999999999998
Q ss_pred hcC
Q 031643 154 FNI 156 (156)
Q Consensus 154 ~Al 156 (156)
.|+
T Consensus 176 ~al 178 (497)
T PLN02521 176 IAI 178 (497)
T ss_pred HHH
Confidence 763
No 6
>PRK05101 galactokinase; Provisional
Probab=99.98 E-value=6.6e-32 Score=226.92 Aligned_cols=133 Identities=26% Similarity=0.397 Sum_probs=113.8
Q ss_pred hhHHhhhhCCCCceeEEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCC-eeEEecCCCCC
Q 031643 2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG-EVRFSIDEIQQ 80 (156)
Q Consensus 2 ~~~f~~~fg~~p~~~~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~-~~~~~l~~l~~ 80 (156)
++.|++.||.+|+ ++++|||||||+|||+||||++||++|||+++++.+++++++.+++.+.+++. ...++++....
T Consensus 8 ~~~f~~~fg~~p~--~~~~APgRvnL~GeH~Dy~gg~vL~~AId~~~~v~i~~~~~~~i~v~s~~~~~~~~~~~~~~~~~ 85 (382)
T PRK05101 8 QSLFAQQFGYPPT--HTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAKRDDRIVRVIAADYDNQQDEFSLDAPIV 85 (382)
T ss_pred HHHHHHHhCCCCC--eEEECCceEEEeccceeecCCEEEEEEecccEEEEEEECCCCEEEEEECCCCCCceEEecCcccc
Confidence 5789999999997 67999999999999999999999999999999999999999999998877752 23456654110
Q ss_pred ccccccccccccccccchhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 81 PRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
. .....|.+|+++++..+...+... .||++.|.|+||+ |+|||||||++||++.||
T Consensus 86 ~------------------~~~~~w~~yv~~~~~~l~~~~~~~-~g~~i~i~~~iP~-gaGLgSSAA~~va~~~al 141 (382)
T PRK05101 86 P------------------HPEQQWANYVRGVVKHLQERNPDF-GGADLVISGNVPQ-GAGLSSSASLEVAVGQTF 141 (382)
T ss_pred c------------------CCCCchHHHHHHHHHHHHHhCCCC-CCeEEEEeCCCCC-CCCcchHHHHHHHHHHHH
Confidence 1 356789999999999998766555 6999999999998 999999999999999774
No 7
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=99.98 E-value=9.9e-32 Score=225.88 Aligned_cols=135 Identities=26% Similarity=0.287 Sum_probs=112.9
Q ss_pred ChhHHhhhhCCCCceeEEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCC-eeEEecCCCC
Q 031643 1 MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG-EVRFSIDEIQ 79 (156)
Q Consensus 1 ~~~~f~~~fg~~p~~~~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~-~~~~~l~~l~ 79 (156)
+++.|.+.||.+|+ ++++|||||+|+|||+||||++||++|||+++++.+++++++.+++.+.+++. ...++++...
T Consensus 4 ~~~~f~~~fg~~p~--~~~~APgrv~L~GeH~dy~g~~vl~~AI~~~~~v~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 81 (386)
T TIGR00131 4 IQKIFASAFGAKPD--FTARAPGRVNLIGEHTDYNDGSVLPCAIDFGTLCAVAVRDDKNVRIYLANADNKFAERSLDLPL 81 (386)
T ss_pred HHHHHHHHHCCCCC--EEEECCcceEeeccceeeCCceEEeeEeeccEEEEEEECCCCeEEEEECCCCCcceEEECCCCC
Confidence 35789999999997 67999999999999999999999999999999999999999999998877753 2334433211
Q ss_pred CccccccccccccccccchhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 80 QPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
. ......|.+|+++++..+.+.+...+.||++.|.|+||+ |+|||||||++||++.||
T Consensus 82 -~-----------------~~~~~~w~~y~~~~~~~~~~~~~~~~~g~~i~i~s~iP~-gsGLgSSAA~~vA~~~al 139 (386)
T TIGR00131 82 -D-----------------GSEVSDWANYFKGVLHVAQERFNSFPLGADIVCSGNVPT-GSGLSSSAAFECAVGAVL 139 (386)
T ss_pred -C-----------------CCCCCCcHhHHHHHHHHHHHhcCCCCCceEEEEECCCCC-CCCcchHHHHHHHHHHHH
Confidence 0 024578999999999999877654435999999999998 999999999999998764
No 8
>PRK00555 galactokinase; Provisional
Probab=99.97 E-value=5.3e-31 Score=220.17 Aligned_cols=118 Identities=26% Similarity=0.405 Sum_probs=103.3
Q ss_pred EEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcccccccccccccccc
Q 031643 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS 96 (156)
Q Consensus 17 ~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 96 (156)
++++|||||||+|||+|||||+|+|+|||+++++.+++++|+++++.+.+++....++++...
T Consensus 3 ~~~~APGRv~LiGEH~dy~~g~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~~~~~~----------------- 65 (363)
T PRK00555 3 VRYAAPGRINLIGEHTDYNLGFALPIALPQRTVVTFTPEHTDAITASSDRADGSARIPLDTTP----------------- 65 (363)
T ss_pred EEEEcCceEEeecccccCCCCeEEeEEeeccEEEEEEECCCCEEEEEECCCCCceEEecCCCC-----------------
Confidence 468999999999999999999999999999999999999999999998887655555554311
Q ss_pred chhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 97 AKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 97 ~~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.....|.+|++|++..+...+..+ .|+++.|.|+||+ |+|||||||++||++.|+
T Consensus 66 ---~~~~~w~~y~~gv~~~l~~~g~~~-~g~~i~i~s~iP~-g~GLgSSAA~~va~~~al 120 (363)
T PRK00555 66 ---GQVTGWAAYAAGVIWALRGAGHPV-PGGAMSITSDVEI-GSGLSSSAALECAVLGAV 120 (363)
T ss_pred ---CCCcchHHHHHHHHHHHHHcCCCC-CCeEEEEecCCCC-CCCccHHHHHHHHHHHHH
Confidence 245789999999999998888766 6999999999998 999999999999998774
No 9
>PRK03817 galactokinase; Provisional
Probab=99.93 E-value=9e-26 Score=187.57 Aligned_cols=114 Identities=28% Similarity=0.539 Sum_probs=97.8
Q ss_pred EEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCccccccccccccccccc
Q 031643 18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSA 97 (156)
Q Consensus 18 ~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 97 (156)
.++|||||+|+|||+||+||+++++|||+++++.++++ +.+++.+.+++....++++++.
T Consensus 2 ~~~APgrv~L~Geh~d~~~g~~l~~aI~~~~~v~~~~~--~~~~i~~~~~~~~~~~~~~~~~------------------ 61 (351)
T PRK03817 2 KVKSPGRVNLIGEHTDYNDGYVLPFAINLYTFLEIEKS--EKFIFYSENFNEEKTFELDKLE------------------ 61 (351)
T ss_pred EEEeeeeEEEeccceeeCCCeEEEEEecCcEEEEEEeC--CeEEEEECCCCCcEEEeCCccC------------------
Confidence 47999999999999999999999999999999999886 3578888878755566665432
Q ss_pred hhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 98 KIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 98 ~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
....|.+|+++++..+.+.+... .||++.++|+||+ |+|||||||+.||++.|+
T Consensus 62 ---~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~iP~-~~GLgSSaa~~va~~~al 115 (351)
T PRK03817 62 ---KLNSWADYIKGVIWVLEKRGYEV-GGVKGKVSSNLPI-GAGLSSSASLEVAVAYAL 115 (351)
T ss_pred ---CCCchHHHHHHHHHHHHHcCCCC-CCeEEEEeCCCCC-CCCcCcHHHHHHHHHHHH
Confidence 45689999999999988776655 6999999999997 999999999999998764
No 10
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.92 E-value=2.5e-25 Score=178.37 Aligned_cols=107 Identities=23% Similarity=0.180 Sum_probs=86.2
Q ss_pred cceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCccccccccccccccccchhc
Q 031643 21 SPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIK 100 (156)
Q Consensus 21 APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (156)
|||||+|+|||+||||++||++|||+++++.+++++++ +++.+..++. ...... .
T Consensus 1 aPgkv~L~GEH~v~~g~~al~~aI~~~~~~~~~~~~~~-~~i~~~~~~~----~~~~~~--------------------~ 55 (273)
T TIGR00549 1 APGKIILFGEHAVVYGEPAIAAPIPLRTTVTVIESSDG-SFIESDLGRG----SLDDAP--------------------Q 55 (273)
T ss_pred CCceEEEEecChhccCCCeeEEEecccEEEEEEEcCCC-ceEeccccCC----cHhHhh--------------------H
Confidence 79999999999999999999999999999999998776 6666544421 111111 2
Q ss_pred cccchhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 101 EECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 101 ~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
+...|.+|+++++..+...+ . .++++.++|++|+ |+|||||||++||++.|+
T Consensus 56 ~~~~~~~~v~~~l~~~~~~~--~-~~~~i~i~s~iP~-g~GLGSSaa~~va~~~al 107 (273)
T TIGR00549 56 ELDGLVSYIAEALSYFSELN--P-PPLEIEIDSEIPP-GRGLGSSAAVAVALIRAL 107 (273)
T ss_pred HHHHHHHHHHHHHHHhhccC--C-CCEEEEEecCCCC-CCCccHHHHHHHHHHHHH
Confidence 45679999999999886432 1 3599999999997 999999999999998764
No 11
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=2.4e-24 Score=181.98 Aligned_cols=134 Identities=28% Similarity=0.329 Sum_probs=103.9
Q ss_pred hHHhhhhCCCCceeEEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCC---eeEEecCCCC
Q 031643 3 NKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG---EVRFSIDEIQ 79 (156)
Q Consensus 3 ~~f~~~fg~~p~~~~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~---~~~~~l~~l~ 79 (156)
+.|...||.+|+ +++++||||||+|||+||+|+.|+|||||..+.+++.+++|+...|...+++. ..+++++...
T Consensus 28 ~~~~~~~~~kp~--~~a~~PgRVnLiGEHiDy~~~sVlpmaid~~~l~~~~~~~d~~~sl~~tN~~~~f~~~~~~~p~~~ 105 (489)
T KOG0631|consen 28 GAFQAAYGAKPV--FVARAPGRVNLIGEHIDYCGYSVLPMAIDVDTLIAVAPSDDGIVSLRLTNFNPDFIYFKYPLPSIV 105 (489)
T ss_pred HHHHHhhCCCce--EEEecCCceecccceeeecCceeeeEEeeeeeEEEEEEcCCCceeEEEecCCCccceeeccCCchh
Confidence 578899999998 68999999999999999999999999999999999999999885555555553 2334443311
Q ss_pred CccccccccccccccccchhccccchhhhH----HHHHHHHHHcCCCC--CCCEEEEEEeccCCCCCCcchHHHHHHHhh
Q 031643 80 QPRNSVKKHHVVHASDSAKIKEECKWGNYA----RGALYALQSRGNNL--TQGIIGYICGSDNLDSSGLSSSAAVSMSFP 153 (156)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~----~gv~~~l~~~g~~~--~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~ 153 (156)
+- + +.....|.+|+ +|+-..+...+.+. +.|+.+...+++|+ |+||+||||++++.+
T Consensus 106 ~~---------------I-~~~~~~w~ny~~C~~~g~h~~~~~~~~~~~~~vGl~~l~~g~vPt-gsgLsSsaa~~c~a~ 168 (489)
T KOG0631|consen 106 WQ---------------I-DPDVSKWENYFYCGMKGFHEYIKRKPVRFEPPVGLSILNDGSVPT-GSGLSSSAAWLCAAA 168 (489)
T ss_pred cc---------------c-CCCccchhhhhccchHHHHHHHhccccccCCCcceEEEecCCCCC-CCCcchhHHHHHHHH
Confidence 10 1 14678999999 56666663333322 24999999999996 999999999988877
Q ss_pred hc
Q 031643 154 FN 155 (156)
Q Consensus 154 ~A 155 (156)
.|
T Consensus 169 lA 170 (489)
T KOG0631|consen 169 LA 170 (489)
T ss_pred HH
Confidence 65
No 12
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.91 E-value=3.9e-24 Score=174.84 Aligned_cols=137 Identities=19% Similarity=0.192 Sum_probs=91.8
Q ss_pred EEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcc----cccccccccc
Q 031643 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPR----NSVKKHHVVH 92 (156)
Q Consensus 17 ~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~----~~~~~~~~~~ 92 (156)
+.++|||||+|||||+++||++++|+|||+|||+.+.+..++++.+...|+.-+..|+++++.... .++. ..+..
T Consensus 5 l~vsaPGKvILfGEHAVVyg~~AlAaai~LrTyl~l~~san~~i~l~l~di~~~~~w~l~~~~~~l~~~~~~~~-~~q~p 83 (397)
T KOG1511|consen 5 LLVSAPGKVILFGEHAVVYGRTALAAAIDLRTYLRLQTSANDRILLQLPDISIEKAWSLADFNGALPEQRSTYE-SVQTP 83 (397)
T ss_pred eeecCCccEEEeccceeEECCceeEEEeecceeEEEEecCCCeEEEecccCCceEEEEhhhhhhhhhhhhhhhh-ccCCc
Confidence 579999999999999999999999999999999999998888888877777767889988743211 1110 00000
Q ss_pred --------cc---ccchhccccchhhhHHHHHHHHHHcCCCCCCC----EEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 93 --------AS---DSAKIKEECKWGNYARGALYALQSRGNNLTQG----IIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 93 --------~~---~~~~~~~~~~w~~y~~gv~~~l~~~g~~~~~g----~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.+ ...++..+.....-+.++++.+.....+. +| +++.++|++|+ |+|||||||++||+++|+
T Consensus 84 ~~~~~~e~~k~l~~l~~~~~~~~~~~a~~~~lYlf~~l~~~~-~g~lp~~~v~v~SelP~-GaGLGSSAa~sv~lAtal 160 (397)
T KOG1511|consen 84 ASEVRVELLKQLGGLLENQEKVKEHLAGLSFLYLFLGLCLRA-PGTLPALTVVVDSELPL-GAGLGSSAAISVALATAL 160 (397)
T ss_pred chhhhHHHHHHhhhhhhcchhhhHHHHHHHHHHHHHHhhhcc-cCCCcceEEEEeccCCC-cCCcchhHHHHHHHHHHH
Confidence 00 00000111100110122333332222222 34 89999999998 999999999999999874
No 13
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.90 E-value=1.1e-23 Score=191.75 Aligned_cols=126 Identities=21% Similarity=0.221 Sum_probs=98.8
Q ss_pred CCceeEEEEcceeeeecccccc------cCCCeEEEeeeccc----eEEEEEEcCCCeEEEEeCCCCCeeEEec-CCCCC
Q 031643 12 DAEVVRVVVSPYRICPLGAHID------HQGGTVSAMTINKG----ILLGFVPSGDTEVVLRSGQFDGEVRFSI-DEIQQ 80 (156)
Q Consensus 12 ~p~~~~~~~APGRv~L~GEH~d------~~Gg~vla~Ai~~~----~~v~~~~~~d~~i~i~s~~~~~~~~~~l-~~l~~ 80 (156)
.++.+.+++|||||+|+||||| |+||.|+++||+++ +++.+++++|.++++++.+++....++. +++..
T Consensus 605 ~~~~~~~~~aPgRVnLiGghTDtPpy~~ynGG~VLn~AId~~g~~pi~v~v~~~~d~~irl~S~d~~~~~~v~~~~~l~~ 684 (974)
T PRK13412 605 YSDQIVWGRSPVRIDLAGGWTDTPPYCLYSGGNVVNLAIELNGQPPLQVYVKPCSEPHIVLRSIDLGAMEVVRTNEELRD 684 (974)
T ss_pred ccCcEEEEeCceEEeecccCcCCCcccCcCCcEEEEEEEeCCCCccEEEEEEECCCCeEEEEECCCCCceEEecchhhcc
Confidence 3566667799999999999999 99999999999996 9999999999999999988864333332 33321
Q ss_pred ccccccccccccccccchhccccchhhhHHHHHH--------------HHHHcCCCCCCCEEEEEEeccCCCCCCcchHH
Q 031643 81 PRNSVKKHHVVHASDSAKIKEECKWGNYARGALY--------------ALQSRGNNLTQGIIGYICGSDNLDSSGLSSSA 146 (156)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gv~~--------------~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSA 146 (156)
. ....+|.+|++|++. .+.+.......||++.+.|+||+ |+||||||
T Consensus 685 ~------------------~~~~~~~~~~K~al~~~G~~~~~~~~~~~~l~e~l~~~G~G~~I~i~s~IP~-GsGLGSSA 745 (974)
T PRK13412 685 Y------------------KKVGSPFSIPKAALCLAGFAPRFSAESYASLEEQLKAFGSGIEITLLAAIPA-GSGLGTSS 745 (974)
T ss_pred c------------------ccccchHhhhhhhheecccccccccchhHHHHHHHHhcCCCeEEEEecCCCC-CCCccHHH
Confidence 1 245689999999874 22221111224899999999998 99999999
Q ss_pred HHHHHhhhcC
Q 031643 147 AVSMSFPFNI 156 (156)
Q Consensus 147 A~~Va~~~Al 156 (156)
|++||++.||
T Consensus 746 AlavA~l~AL 755 (974)
T PRK13412 746 ILAATVLGAI 755 (974)
T ss_pred HHHHHHHHHH
Confidence 9999998774
No 14
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.90 E-value=2.4e-23 Score=173.83 Aligned_cols=122 Identities=15% Similarity=0.153 Sum_probs=94.0
Q ss_pred EEEcceeeeecccccccC-CCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCC-eeEEecCCCCCccccccccccccccc
Q 031643 18 VVVSPYRICPLGAHIDHQ-GGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG-EVRFSIDEIQQPRNSVKKHHVVHASD 95 (156)
Q Consensus 18 ~~~APGRv~L~GEH~d~~-Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~~ 95 (156)
.++|||||+|+|||+||| |.+||++|||+++++.++++++..+++.+.+++. ...|..+.....
T Consensus 2 ~~~APGKl~L~GEhavv~~G~pAl~~aI~~~~~v~i~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~-------------- 67 (358)
T TIGR01220 2 VVHAPGKLFVAGEYAVVEPGNPAILVAVDRFVTVTVEDADGAADVIISSDLGPQPVGWRRHDGRLV-------------- 67 (358)
T ss_pred eeecceeEEEeeeEEEecCCCeEEEEEEcCcEEEEEEeCCCCceEEEecCCCCCceEEEecCCcee--------------
Confidence 478999999999999999 7789999999999999999998878888877753 344444321100
Q ss_pred cchhccccchhhhHHHHHHHHH----HcCCCCCCCEEEEEEeccCCCC----CCcchHHHHHHHhhhcC
Q 031643 96 SAKIKEECKWGNYARGALYALQ----SRGNNLTQGIIGYICGSDNLDS----SGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 96 ~~~~~~~~~w~~y~~gv~~~l~----~~g~~~~~g~~i~i~s~iP~~g----aGLgSSAA~~Va~~~Al 156 (156)
........|.+|+++++..+. ..+... .||++.|.|++|+ + +|||||||++||++.|+
T Consensus 68 -~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~-~g~~~~i~s~ip~-~~g~k~GLGSSAA~~Va~~~Al 133 (358)
T TIGR01220 68 -VRDPDARSALAYVVSAIETVERYAGERNQKL-PALHLSVSSRLDE-ADGRKYGLGSSGAVTVATVKAL 133 (358)
T ss_pred -ecccccccchHHHHHHHHHHHHHHHhcCCCC-CceEEEEecCCCC-cCCCCCCccHHHHHHHHHHHHH
Confidence 000124579999999887653 234555 5899999999997 5 59999999999998764
No 15
>PLN02677 mevalonate kinase
Probab=99.90 E-value=4.2e-23 Score=173.71 Aligned_cols=137 Identities=18% Similarity=0.173 Sum_probs=90.0
Q ss_pred EEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcC----CCeEEEEeCCCCCeeEEecCCCCCccccc--c--cc
Q 031643 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSG----DTEVVLRSGQFDGEVRFSIDEIQQPRNSV--K--KH 88 (156)
Q Consensus 17 ~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~----d~~i~i~s~~~~~~~~~~l~~l~~~~~~~--~--~~ 88 (156)
+.++|||||+|+|||+||+|++++++||++++++.+++++ .+.+++...|++...+|+++++.+..... . +.
T Consensus 3 i~v~apgk~~l~Geh~~~~g~~a~~~ai~~~~~~~~~~~~~~~~~~~i~~~~~di~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (387)
T PLN02677 3 VKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVSLRFPPSAENDDTLKLQLKDLGLEFSWPLARIKEALPDLGTPCPST 82 (387)
T ss_pred eEEeCCccEEEeeeeeeecCCeeeeeEeeceEEEEEEecCCCCCCCeEEEEcCCCCceEEechHhhhhhhcccccccccc
Confidence 4689999999999999999999999999999999999753 35566666677666778877765432110 0 00
Q ss_pred ccccc-------cccchh---ccccch-hhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 89 HVVHA-------SDSAKI---KEECKW-GNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 89 ~~~~~-------~~~~~~---~~~~~w-~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
..... ...... +....+ .+...++++.+.... .. .++++.|+|+||+ |+|||||||++||++.||
T Consensus 83 ~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~flyl~~~~~-~~-~~~~i~I~S~lP~-GaGLGSSAAv~Va~~~AL 158 (387)
T PLN02677 83 PTSCSEETLKSIAALVEEQNIPEAKIWLSSGVSAFLWLYTSIL-GF-NPATVVVTSELPL-GSGLGSSAAFCVALSAAL 158 (387)
T ss_pred ccccCHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHhc-cC-CCeEEEEEccCCC-CCCccHHHHHHHHHHHHH
Confidence 00000 000000 000111 111233444444322 23 4789999999997 999999999999998774
No 16
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []. The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....
Probab=99.90 E-value=6.9e-24 Score=130.92 Aligned_cols=52 Identities=27% Similarity=0.461 Sum_probs=44.0
Q ss_pred hhHHhhhhCCCCceeEEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEc
Q 031643 2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPS 55 (156)
Q Consensus 2 ~~~f~~~fg~~p~~~~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~ 55 (156)
|+.|++.||.+|+ .+++||||++|+|||+||+||.|||+||+++|++++++|
T Consensus 1 ~~~F~~~fg~~p~--~~~~APGRvnliGeHtDy~gG~Vl~~Ai~~~~~~a~~~r 52 (52)
T PF10509_consen 1 KEEFEEFFGEEPE--VVASAPGRVNLIGEHTDYNGGFVLPAAIDLRTYVAVSPR 52 (52)
T ss_dssp -HHHHHHHSS--S--EEEEEEEEEEEE-TT-GGGT-EEEEEEEEEEEEEEEEEE
T ss_pred ChhHHHHhCCCCC--EEEECCceEEecCcccccCCCeEEEEEeeccEEEEEEcC
Confidence 6899999999997 589999999999999999999999999999999999986
No 17
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=99.83 E-value=1.8e-20 Score=153.34 Aligned_cols=109 Identities=22% Similarity=0.267 Sum_probs=85.8
Q ss_pred EEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCccccccccccccccccc
Q 031643 18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSA 97 (156)
Q Consensus 18 ~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 97 (156)
.++||||++|||||+++||.+++++||++++++.++..++.++.+.+.++... .+.. .
T Consensus 2 ~~~aPgKliL~GEHAVVyG~pAI~~aI~~~~~v~~~~s~~~~~~i~~~~~~~~---~~~~---~---------------- 59 (307)
T COG1577 2 SVSAPGKLILFGEHAVVYGYPAIAAAIDLRVTVTISESDSNKIVIESSDLKSS---TLER---D---------------- 59 (307)
T ss_pred cccccccEEEEecceeeeCCchhheeeeeeEEEEEEecCCCcEEEeccCCCCc---cccc---c----------------
Confidence 37999999999999999999999999999999999999888888877666432 1111 0
Q ss_pred hhccccchhhhHHHHHHHHHHcCC--CCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 98 KIKEECKWGNYARGALYALQSRGN--NLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 98 ~~~~~~~w~~y~~gv~~~l~~~g~--~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.. ..|+..++..+.+... .. .+|++.|.|++|+ |+|||||||+.||++.|+
T Consensus 60 ---~~---~~~~~~~v~~~~e~~~~~~~-~~~~l~I~S~iP~-g~GLGSSAAVsva~i~al 112 (307)
T COG1577 60 ---ED---EGYIQAAVRLASELLNQSSL-KPFSLEIDSEIPI-GAGLGSSAAVSVAVIKAL 112 (307)
T ss_pred ---cc---chHHHHHHHHHHHHhcccCC-CCeEEEEecCCCC-CCCccHHHHHHHHHHHHH
Confidence 11 1566666665554322 23 6899999999998 999999999999999874
No 18
>PRK03926 mevalonate kinase; Provisional
Probab=99.83 E-value=4.9e-20 Score=149.98 Aligned_cols=103 Identities=20% Similarity=0.247 Sum_probs=81.4
Q ss_pred EEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcccccccccccccccc
Q 031643 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS 96 (156)
Q Consensus 17 ~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 96 (156)
+.++|||||+|+|||+||||++++++||++++++.++++++. +++.. ... +
T Consensus 2 ~~~~aPgkv~L~Geh~~~~g~~~l~~aI~~~~~v~i~~~~~~-~~i~~-~~~--------~------------------- 52 (302)
T PRK03926 2 VLCSAPGKIYLFGEHAVVYGKPAIACAIDLRTYVRAEFNDDS-IYIES-DYG--------K------------------- 52 (302)
T ss_pred eEEeeeeEEEEEecceeecCCeEEEEEecceEEEEEEECCCc-eEEec-ccc--------c-------------------
Confidence 468999999999999999999999999999999999887543 33321 110 0
Q ss_pred chhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 97 AKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 97 ~~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
...|..|++.++..+.+.. .. .|+++.++++||+ |+|||||||+.+|++.|+
T Consensus 53 -----~~~~~~~~~~~~~~~~~~~-~~-~g~~i~i~~~iP~-~~GLGSSsA~~~a~~~al 104 (302)
T PRK03926 53 -----TGEKHPYVSAAIEKMREEA-DK-DGVTVSITSQIPV-GSGLGSSAAVTVATIGAL 104 (302)
T ss_pred -----ccchhHHHHHHHHHHHHhc-CC-CCeEEEEecCCCC-CCCccHHHHHHHHHHHHH
Confidence 1146677888887776542 23 4899999999997 999999999999988764
No 19
>PTZ00298 mevalonate kinase; Provisional
Probab=99.66 E-value=1.9e-16 Score=130.77 Aligned_cols=109 Identities=13% Similarity=0.029 Sum_probs=71.4
Q ss_pred EEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcC-CCeEEEEeCCCCCeeEEecCCCCCcccccccccccccccc
Q 031643 18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSG-DTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS 96 (156)
Q Consensus 18 ~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~-d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 96 (156)
...|||||+|||||+|+||.++++.+|+++..+.+...+ ++.+.+... . ..+..
T Consensus 12 ~~~~~~kvil~GEHaVvyg~~aI~~~I~~~d~~~i~~~~~~~~~~~~~~-~--------~~~~~---------------- 66 (328)
T PTZ00298 12 KHIGYGKVILFGEHFVVYGAEAIVAGIDEYTECRLELTKGVPGLQVVDQ-R--------PAVPG---------------- 66 (328)
T ss_pred CCCcCeeEEEEecceeecCCchhhhecccceEEEEEEccCCCCceeccc-c--------ccccc----------------
Confidence 478999999999999999999999999999766666433 222221110 0 00000
Q ss_pred chhccccchhhhHHHHHHHHHH-cCCCC-CCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 97 AKIKEECKWGNYARGALYALQS-RGNNL-TQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 97 ~~~~~~~~w~~y~~gv~~~l~~-~g~~~-~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
....-.+.+..+...+.+ .+... +.|+++.|.++||+ |+|||||||++||++.|+
T Consensus 67 ----~~~~~~n~~~~a~~~~~~~~~~~~~~~g~~I~I~~~IP~-gaGLGSSsA~avA~l~al 123 (328)
T PTZ00298 67 ----YIVEKREEQRKAHQLVLRHLNIDTSVDGLKMHLGGPLVP-SSGIGASASDVVSLSRAL 123 (328)
T ss_pred ----hHHHhHHHHHHHHHHHHHHHhcccCCCCeEEEEECCCCC-CCCchHHHHHHHHHHHHH
Confidence 000012223333343332 34321 14899999999998 999999999999998764
No 20
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.65 E-value=1.4e-15 Score=124.00 Aligned_cols=105 Identities=16% Similarity=0.147 Sum_probs=81.3
Q ss_pred EEEcceeeeeccccccc-CCCe----EEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcccccccccccc
Q 031643 18 VVVSPYRICPLGAHIDH-QGGT----VSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVH 92 (156)
Q Consensus 18 ~~~APGRv~L~GEH~d~-~Gg~----vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 92 (156)
+++|||||||+|||+++ .+|+ ++.++|+++.++.+++++++.+++.+.+. ++.
T Consensus 3 ~~~apaKiNL~l~i~~~r~dGyH~l~sl~~~i~l~d~v~i~~~~~~~i~~~~~~~---------~~~------------- 60 (293)
T TIGR00154 3 VFPSPAKLNLFLYITGKRPDGYHELQTLMQFLDLGDKIIISVRSDDDIRLLKGDF---------DVP------------- 60 (293)
T ss_pred eEeecccEEEEEecCCcCCCCCcceEEEEEEeccCcEEEEEECCCCcEEEeeCCC---------CCC-------------
Confidence 57999999999999987 6677 99999999999999988776677654321 111
Q ss_pred ccccchhccccchhhhHHHHHHHHHHc-CCC--CCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 93 ASDSAKIKEECKWGNYARGALYALQSR-GNN--LTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 93 ~~~~~~~~~~~~w~~y~~gv~~~l~~~-g~~--~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.. .+|+..++..+.+. +.. ...|+++.++++||+ |+|||||||..+|++.|+
T Consensus 61 -------~~----~nlv~~a~~~l~~~~~~~~~~~~~~~i~i~~~iP~-~aGLGsssa~aaa~l~al 115 (293)
T TIGR00154 61 -------LE----ENLIYRAAQLLKNFANSKIKSLDGANIEIDKNIPM-GAGLGGGSSDAATVLVGL 115 (293)
T ss_pred -------CC----CcHHHHHHHHHHHHhcccccCCCCeEEEEeccCCC-CCCcchhHHHHHHHHHHH
Confidence 01 26777887777654 311 225899999999997 999999999999988764
No 21
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.63 E-value=3.6e-15 Score=120.67 Aligned_cols=105 Identities=19% Similarity=0.119 Sum_probs=80.1
Q ss_pred EEEEcceeeee----cccccc-cCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCccccccccccc
Q 031643 17 RVVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV 91 (156)
Q Consensus 17 ~~~~APGRv~L----~GEH~d-~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~ 91 (156)
+.++||||||| +|+|.| ||...++++||+++.++.+++.++..+++..... .+.
T Consensus 3 ~~~~apakinl~l~i~g~~~dg~h~l~si~~ai~l~~~v~v~~~~~~~~~i~~~~~---------~~~------------ 61 (286)
T PRK00128 3 ILEKAPAKINLSLDVLGKREDGYHEVEMIMQTIDLADRLEIEKLKEDGIVVESNNR---------YVP------------ 61 (286)
T ss_pred EEEeccceEEEEeecCccCCCCcceeheeeEecCCCcEEEEEECCCCCEEEEeCCC---------CCC------------
Confidence 45899999999 899999 9999999999999999999987665566543211 100
Q ss_pred cccccchhccccchhhhHHHHHHHHHHc-CCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 92 HASDSAKIKEECKWGNYARGALYALQSR-GNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 92 ~~~~~~~~~~~~~w~~y~~gv~~~l~~~-g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
..|.+++..++..+.+. +. +.|+++.+.++||+ |+|||||||..+|++.|+
T Consensus 62 -----------~~~~n~~~~~~~~~~~~~~~--~~~~~i~i~~~iP~-~~GLGSSsa~a~a~~~al 113 (286)
T PRK00128 62 -----------NDERNLAYKAAKLLKERYNI--KQGVSITIDKNIPV-AAGLAGGSSDAAATLRGL 113 (286)
T ss_pred -----------CCCCcHHHHHHHHHHHhcCC--CCCeEEEEEcCCCc-cccchHHHHHHHHHHHHH
Confidence 11344555555555543 33 25899999999997 999999999999998764
No 22
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.61 E-value=1.2e-15 Score=122.81 Aligned_cols=109 Identities=25% Similarity=0.245 Sum_probs=78.3
Q ss_pred EEEEcceeeeeccccccc------CCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcccccccccc
Q 031643 17 RVVVSPYRICPLGAHIDH------QGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHV 90 (156)
Q Consensus 17 ~~~~APGRv~L~GEH~d~------~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~ 90 (156)
++.+||-||.+.|..||+ |||.|++++||+++|+.+.+.-|.++++. ++.. -.+++..
T Consensus 2 ii~raPLRItfgGGGTDvepy~~k~GGaVlnatIdky~y~~i~~~~d~~I~~~---~~~~--~~v~~~~----------- 65 (333)
T COG2605 2 IISRAPLRITFGGGGTDVEPYCSKHGGAVLNATIDKYIYVTIEKGFDDEIRVR---YDRT--EFVKSYL----------- 65 (333)
T ss_pred cccccceEEEecCCCcCchHHHHhcCCEEEEeeeeeEEEEEEccCCCceEEEe---cchH--HhhhhhH-----------
Confidence 467899999999999999 99999999999999999999998888875 2211 0111110
Q ss_pred ccccccchhccccchhhhHHHHHHH-HHH-cCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 91 VHASDSAKIKEECKWGNYARGALYA-LQS-RGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 91 ~~~~~~~~~~~~~~w~~y~~gv~~~-l~~-~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
..+++ ..++.++.. +.. .|. ..++++..+|+|+ |+|||||+|+.||++.|+
T Consensus 66 ---------~~~h~--~~~~~~l~r~~l~~~g~---~~~el~~~~D~P~-GSGLGSSSa~vvaLl~a~ 118 (333)
T COG2605 66 ---------ENEHK--PLVVESLKRDFLEFNGG---TPIELHTQSDAPP-GSGLGSSSAFVVALLNAL 118 (333)
T ss_pred ---------hhcCc--hHHHHHHHHHHHhhcCC---CceEEEEecCCCC-CCCCCchHHHHHHHHHHH
Confidence 01111 223344432 221 221 1289999999998 999999999999998764
No 23
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.59 E-value=1.5e-14 Score=118.62 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=81.0
Q ss_pred EEEEcceeeee----cccccc-cCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCccccccccccc
Q 031643 17 RVVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV 91 (156)
Q Consensus 17 ~~~~APGRv~L----~GEH~d-~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~ 91 (156)
+.++||+|||| +|+|.| |+...++.++|+++.++.+++.++..+++..... .++.
T Consensus 4 ~~~~apakiNL~L~i~g~~~dGy~~l~~~~~~i~l~d~v~v~~~~~~~~~~~~~~~---------~~~~----------- 63 (312)
T PRK02534 4 YTLIAPAKINLHLEILGDRPDGFHELAMVMQSIDLADRLELRNNGDGTIRLHCDHP---------QLST----------- 63 (312)
T ss_pred EEEEeceEEEeccccCccCCCCCCceEEEEEECCCCCEEEEEECCCCcEEEEECCC---------CCCC-----------
Confidence 34789999999 799999 9999999999999999999987766565543210 1110
Q ss_pred cccccchhccccchhhhHHHHHHHHHHc-CCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 92 HASDSAKIKEECKWGNYARGALYALQSR-GNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 92 ~~~~~~~~~~~~~w~~y~~gv~~~l~~~-g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
...+++..++..+.+. +.+. .|+++.|.++||+ |+|||||||..+|++.|+
T Consensus 64 ------------~~~n~~~~~~~~~~~~~~~~~-~~~~i~i~~~IP~-~~GLGSssa~~~A~~~al 115 (312)
T PRK02534 64 ------------DDDNLIYRAAQLLRKRFPFAE-GGVDITLEKRIPI-GAGLAGGSTDAAAVLVGL 115 (312)
T ss_pred ------------CchhHHHHHHHHHHHHhCCCC-CCeEEEEecCCCC-cCCccHHHHHHHHHHHHH
Confidence 0134566666666554 5443 5899999999997 999999999999988764
No 24
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.29 E-value=2.6e-11 Score=98.03 Aligned_cols=101 Identities=17% Similarity=0.087 Sum_probs=76.2
Q ss_pred EEEEcceeeeecccccccCCCeE--------EEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcccccccc
Q 031643 17 RVVVSPYRICPLGAHIDHQGGTV--------SAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKH 88 (156)
Q Consensus 17 ~~~~APGRv~L~GEH~d~~Gg~v--------la~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~ 88 (156)
+.++||+||||++ | +.|.+. +..+|+++..+.+++.++..+++.+. .+ ++
T Consensus 7 ~~~~apaKiNL~L-~--v~~~r~dGyH~l~s~~~~i~l~D~v~i~~~~~~~~~i~~~-~~--------~~---------- 64 (271)
T PRK00343 7 LDWPAPAKLNLFL-H--ITGRRADGYHELQTLFQFLDWGDTLHFEVRDDGEIRLLTP-IP--------GV---------- 64 (271)
T ss_pred EEEeeeeeEEEEe-e--cCCcCCCCCCeeeEEEEEcccceEEEEEECCCCcEEEeCC-CC--------CC----------
Confidence 3468999999999 5 445554 99999999999998877655555421 11 11
Q ss_pred ccccccccchhccccchhhhHHHHHHHHHHc-CCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 89 HVVHASDSAKIKEECKWGNYARGALYALQSR-GNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 89 ~~~~~~~~~~~~~~~~w~~y~~gv~~~l~~~-g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
..|.+|+..++..+.+. +.. .|+++.|.++||+ |+|||||||..+|++.|+
T Consensus 65 --------------~~~~N~v~~a~~~l~~~~~~~--~~~~i~i~k~IP~-gaGLGssSs~aaa~l~al 116 (271)
T PRK00343 65 --------------PEEDNLIVRAARLLQKATGTP--LGADISLDKRLPM-GGGLGGGSSDAATTLVAL 116 (271)
T ss_pred --------------CCcccHHHHHHHHHHHHhCCC--CCeEEEEEcCCCC-cCCCCcchHHHHHHHHHH
Confidence 13468888888888765 432 5899999999997 999999999999987764
No 25
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.12 E-value=7.1e-10 Score=95.35 Aligned_cols=127 Identities=20% Similarity=0.195 Sum_probs=80.7
Q ss_pred EEcceeeeecccccccC-CCeEEEeeeccceEEEEEEcCCC------eEEEEeCCCCC-eeEEecCCCCCcccccccccc
Q 031643 19 VVSPYRICPLGAHIDHQ-GGTVSAMTINKGILLGFVPSGDT------EVVLRSGQFDG-EVRFSIDEIQQPRNSVKKHHV 90 (156)
Q Consensus 19 ~~APGRv~L~GEH~d~~-Gg~vla~Ai~~~~~v~~~~~~d~------~i~i~s~~~~~-~~~~~l~~l~~~~~~~~~~~~ 90 (156)
++||||+-|.||..++. |.+++-+|++.|+++.+++..+. .++|.|.+|.+ ...|.++.-.... +.
T Consensus 2 ~sAPGKlliAGgYlVLep~y~aiVval~~r~~a~v~~~~~~~~~~~~~i~v~SpQf~~~~~~y~~~~~~~~~------~~ 75 (454)
T TIGR01219 2 ASAPGKVLMAGGYLVLDKPYAGLVLGLNARFYAIVKPINEEVGAWKWDVRVKSPQFSDREWLYKISLNHLTL------QS 75 (454)
T ss_pred cccCceEEEecceEEecCCCcEEEEEecceEEEEEeecccccccCcceEEEeCCCCCCCceEEEEecCCccc------ee
Confidence 68999999999999994 55789999999999999875431 36889999974 3445443210000 00
Q ss_pred ccccccchhccccchhhhHHHHHH----HHHHcCCC---CCCCEEEEEEecc-------------------CC-------
Q 031643 91 VHASDSAKIKEECKWGNYARGALY----ALQSRGNN---LTQGIIGYICGSD-------------------NL------- 137 (156)
Q Consensus 91 ~~~~~~~~~~~~~~w~~y~~gv~~----~l~~~g~~---~~~g~~i~i~s~i-------------------P~------- 137 (156)
..... .....-..|+..++. .+...+.. + .+++++|.||. +.
T Consensus 76 ~~~~~----~~~~~~n~fv~~ai~~~~~y~~~~~~~~~~l-~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~~~~~~e~ 150 (454)
T TIGR01219 76 VSASD----SRNPFVNPFIQYAIAAVHLYFDKESLHKLLL-QGLDITILGDNAYYSQPESLGTLAPFASITFNAAEKPEV 150 (454)
T ss_pred ecccc----cCCCCCChHHHHHHHHHHHHHHhcccccccc-CceEEEEEecCCcccccchhcccccccccccccccCCCc
Confidence 00000 001111334544333 23333333 4 58999998876 21
Q ss_pred CCCCcchHHHHHHHhhhcC
Q 031643 138 DSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 138 ~gaGLgSSAA~~Va~~~Al 156 (156)
.+.|||||||++||++.||
T Consensus 151 ~K~GLGSSAAvtVa~v~AL 169 (454)
T TIGR01219 151 AKTGLGSSAAMTTALVAAL 169 (454)
T ss_pred cccCccHHHHHHHHHHHHH
Confidence 1789999999999999875
No 26
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.03 E-value=1.7e-09 Score=87.42 Aligned_cols=100 Identities=15% Similarity=0.075 Sum_probs=72.6
Q ss_pred EEcceeeeec----ccccc-cCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCccccccccccccc
Q 031643 19 VVSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHA 93 (156)
Q Consensus 19 ~~APGRv~L~----GEH~d-~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 93 (156)
.+||+||||+ |..-| ||.-..+..+|+++-++.+.+.++ +++.... ..+
T Consensus 4 ~~a~aKiNL~L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~~~--~~i~~~~---------~~~--------------- 57 (275)
T PRK14611 4 LLSPAKVNLGLWILGKRPDGYHEIFTIYHTIDLYDRIYIKEHHT--LEVKTSS---------PQI--------------- 57 (275)
T ss_pred eeecceEEeeeccCcCCCCCcchhhheeEeccCCcEEEEEECCc--EEEEeCC---------CCC---------------
Confidence 6899999987 66666 777788899999999998887432 3332110 011
Q ss_pred cccchhccccchhhhHHHHHHHHHHc-CCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 94 SDSAKIKEECKWGNYARGALYALQSR-GNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 94 ~~~~~~~~~~~w~~y~~gv~~~l~~~-g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
+. +.+++..++..+.+. |.. .|+++.+.++||+ ++|||||||..||++.|+
T Consensus 58 -------~~--~~n~v~~a~~~~~~~~g~~--~~~~i~i~k~IP~-~~GLGSSsA~aaA~l~al 109 (275)
T PRK14611 58 -------KE--EENIVYKALRLFERYTGID--INYSIFIEKNIPV-GAGLGGGSSNAAVVLKYL 109 (275)
T ss_pred -------CC--cccHHHHHHHHHHHHhCCC--CCeEEEEEeCCCC-cCCccHHHHHHHHHHHHH
Confidence 11 356666666666654 443 5899999999997 999999999999998764
No 27
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.79 E-value=3.6e-08 Score=80.42 Aligned_cols=104 Identities=13% Similarity=0.039 Sum_probs=66.6
Q ss_pred EEcceeeeec----ccccc-cCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCccccccccccccc
Q 031643 19 VVSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHA 93 (156)
Q Consensus 19 ~~APGRv~L~----GEH~d-~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 93 (156)
..||+||||+ |..-| ||.=..+-++|+++-.+.+.+.+...+++. ..+. +.++.
T Consensus 3 ~~a~aKiNl~L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~~~~~i~~~--~~~~------~~~~~------------- 61 (300)
T PRK03188 3 VRAPAKVNLHLGVGPLRDDGYHELATVFQAVSLYDEVTVTAADVLSVEVS--GEGA------DQVPT------------- 61 (300)
T ss_pred EeecceEEEeeccCCcCCCCccchHhhheehhhccEEEEEECCCcEEEEe--cCCc------cCCCC-------------
Confidence 4899999987 44443 566667888999999999887543223221 1110 01110
Q ss_pred cccchhccccchhhhHHHHHHHHHH-cCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 94 SDSAKIKEECKWGNYARGALYALQS-RGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 94 ~~~~~~~~~~~w~~y~~gv~~~l~~-~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.+ .+.+.-++..+.+ .+.. .++++.|+++||+ ++|||||||..+|++.|+
T Consensus 62 -------~~---~nl~~~~~~~~~~~~~~~--~~~~I~i~s~IP~-~~GLGSSSA~a~A~l~al 112 (300)
T PRK03188 62 -------DE---SNLAWRAAELLAEHVGRA--PDVHLHIDKGIPV-AGGMAGGSADAAAALVAC 112 (300)
T ss_pred -------CC---ccHHHHHHHHHHHHhCCC--CCeEEEEEcCCcc-cCcchHHHHHHHHHHHHH
Confidence 00 1222333344433 3432 5899999999997 999999999999998764
No 28
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.79 E-value=1.1e-07 Score=77.65 Aligned_cols=107 Identities=16% Similarity=0.070 Sum_probs=64.5
Q ss_pred EEEEcceeeeec----ccccc-cCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCccccccccccc
Q 031643 17 RVVVSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV 91 (156)
Q Consensus 17 ~~~~APGRv~L~----GEH~d-~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~ 91 (156)
+.+.||+||||+ |---| ||.=..+-..|+++=.+.+++.++..+++... .. +.+
T Consensus 7 ~~~~a~aKiNL~L~i~~kr~dGyH~l~s~~~~i~l~D~l~i~~~~~~~i~~~~~-~~-------~~i------------- 65 (290)
T PRK14608 7 LTEFAPAKINLALHVTGRRADGYHLLESLVAFADVGDRLTLEPAEALSLTVSGP-FA-------AGL------------- 65 (290)
T ss_pred EEEEeceeEEeeeccCCCCCCCCcceeEEEEECCCCcEEEEEECCCCcEEEeCC-Cc-------cCC-------------
Confidence 347899999986 33333 44444555555555555555443322332210 00 000
Q ss_pred cccccchhccccchhhhHHHHHHHHHHc-CCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 92 HASDSAKIKEECKWGNYARGALYALQSR-GNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 92 ~~~~~~~~~~~~~w~~y~~gv~~~l~~~-g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
+ .++.|++.-++..+.+. |... .|+++.+.++||+ |+|||||||..||++.++
T Consensus 66 ---------p-~~~~Nlv~ka~~~~~~~~g~~~-~~~~i~i~k~IP~-~~GLGsssa~aaa~l~~l 119 (290)
T PRK14608 66 ---------G-DGDDNLVLRAARALRARVGPGL-PPGAFHLEKNLPV-AAGIGGGSADAAAALRLL 119 (290)
T ss_pred ---------C-CCCCcHHHHHHHHHHHHhCCCC-CceEEEEEeCCcC-cCCchHHHHHHHHHHHHH
Confidence 1 12356665566666543 3222 5899999999997 999999999999988763
No 29
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.76 E-value=8.6e-08 Score=77.44 Aligned_cols=50 Identities=12% Similarity=-0.021 Sum_probs=39.8
Q ss_pred chhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 104 KWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 104 ~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.|.|++..++..+.+... . .|+++.+.++||+ |+|||||||..+|++.|+
T Consensus 62 ~~~Nlv~~a~~~~~~~~~-~-~~~~i~i~k~IP~-~aGLGssss~aaa~l~al 111 (269)
T PRK14609 62 PEDNLVVKAYNLLKKDFP-L-PPVHIHLYKHIPI-GAGLGGGSSDAAFMLKLL 111 (269)
T ss_pred ccccHHHHHHHHHHHHcC-C-CCeEEEEecCCCC-CCcccHHHHHHHHHHHHH
Confidence 456777777777665422 3 4899999999997 999999999999998764
No 30
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.76 E-value=1.2e-07 Score=77.12 Aligned_cols=102 Identities=19% Similarity=0.105 Sum_probs=67.6
Q ss_pred EEEcceeeeec----ccccc-cCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcccccccccccc
Q 031643 18 VVVSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVH 92 (156)
Q Consensus 18 ~~~APGRv~L~----GEH~d-~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 92 (156)
.++||+||||+ |---| ||.=.++.++|+++..+.+.+.+ .+++.... .+++.
T Consensus 5 ~~~a~aKiNL~L~i~~~r~dgyH~l~si~~~i~l~d~v~v~~~~--~~~i~~~~---------~~~p~------------ 61 (287)
T PRK14616 5 SVKAFAKINLGLLITGKRPDGYHTLETIFAPINWYDTLTFSPSD--TISMSCTN---------LDLPV------------ 61 (287)
T ss_pred EEeeceeEEeeeecCCCCCCCccceeEEEEEcCCCCEEEEEECC--CEEEEeCC---------CCCCC------------
Confidence 46899999986 44444 77777899999999999988743 23332110 01110
Q ss_pred ccccchhccccchhhhHHHHHHHHHH-cCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 93 ASDSAKIKEECKWGNYARGALYALQS-RGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 93 ~~~~~~~~~~~~w~~y~~gv~~~l~~-~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
. ..+.+.-++..+.+ .+. ..|+++.|.++||+ ++|||||||..+|++.|+
T Consensus 62 --------~---~~nl~~~a~~~~~~~~~~--~~~~~I~i~k~IP~-~~GLGssSA~aaA~l~al 112 (287)
T PRK14616 62 --------D---DSNLCIRAAKALQEYAGV--SKGVSITLDKRVPF-GAGLGGGSSDAATVLRVL 112 (287)
T ss_pred --------C---ccHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCC-cCCchHHHHHHHHHHHHH
Confidence 0 12223233333333 343 25899999999997 999999999999988763
No 31
>PRK01123 shikimate kinase; Provisional
Probab=98.73 E-value=7.8e-08 Score=78.00 Aligned_cols=98 Identities=20% Similarity=0.112 Sum_probs=62.9
Q ss_pred eeeeeccccccc---CCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCccccccccccccccccchh
Q 031643 23 YRICPLGAHIDH---QGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKI 99 (156)
Q Consensus 23 GRv~L~GEH~d~---~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 99 (156)
.|.+..|.-+|+ +.+.--+++||+|+++.+++.++. +.+. ... +.++
T Consensus 3 ~~~~~~gg~~~~~~~~~~~g~~~~i~l~~~v~v~~~~~~-~~~~-~~~--------~~~~-------------------- 52 (282)
T PRK01123 3 GRATALGAGTIINAIATGKGSAFGIDLKTTATVELSDDG-GGIE-GEI--------SGNP-------------------- 52 (282)
T ss_pred ceEEecchhhhhhhhhcCcccEEEeccEEEEEEEECCCC-ceee-ecc--------cCCC--------------------
Confidence 466777777775 222233449999999999886653 2221 111 1111
Q ss_pred ccccchhhhHHHHHHHHHH-cCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 100 KEECKWGNYARGALYALQS-RGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 100 ~~~~~w~~y~~gv~~~l~~-~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
... .+++.-++..+.+ .+.. .||++.++++||+ ++|||||||..||++.|+
T Consensus 53 --~~~-~~~v~~~~~~~~~~~~~~--~~~~i~i~s~IP~-~~GLGSSaA~~va~~~a~ 104 (282)
T PRK01123 53 --DAD-TRLIERCVELVLERFGID--YGATVRTKSEIPL-ASGLKSSSAAANATVLAT 104 (282)
T ss_pred --CCC-chHHHHHHHHHHHHhCCC--CCEEEEEecCCCC-CCCccHHHHHHHHHHHHH
Confidence 001 2344444454443 3443 4899999999997 999999999999998764
No 32
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.72 E-value=1.3e-07 Score=76.49 Aligned_cols=102 Identities=17% Similarity=0.156 Sum_probs=69.4
Q ss_pred EEcceeeeec----ccccc-cCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCccccccccccccc
Q 031643 19 VVSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHA 93 (156)
Q Consensus 19 ~~APGRv~L~----GEH~d-~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 93 (156)
++||+||||+ |-.-| ||.=..+-.+|+++-.+.+.+.++ .+++.... . .+..
T Consensus 5 ~~a~aKiNl~L~i~~~~~dgyH~l~sl~~al~l~d~v~i~~~~~-~~~i~~~~---~---~~p~---------------- 61 (276)
T PRK14612 5 RLAPAKVNLGLSVLGRREDGYHELHTLMVPLDVGDRLEVEPIAS-GLELRVLG---A---DLPT---------------- 61 (276)
T ss_pred EeeCcEEeeccccCCCCCCCCceeEEEEEECCCCCEEEEEECCC-cEEEEcCC---C---CCCC----------------
Confidence 6899999986 66555 788889999999999999987553 34443111 0 0110
Q ss_pred cccchhccccchhhhH-HHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 94 SDSAKIKEECKWGNYA-RGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 94 ~~~~~~~~~~~w~~y~-~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
. ..+.+ +++...+...|.. .|+++.+.++||+ |+|||||||..+|++.++
T Consensus 62 -------~---~~Nli~ka~~~~~~~~g~~--~~~~I~i~k~IP~-~~GLGssSa~aaa~l~al 112 (276)
T PRK14612 62 -------D---ERNLVYRAARAYLDAAGQP--GGVRITLEKRLPL-AAGLGGGSSDAAATLLAL 112 (276)
T ss_pred -------C---CcccHHHHHHHHHHHhCCC--CCeEEEEEecCCC-cCCCchHHHHHHHHHHHH
Confidence 0 01222 3333333334542 5899999999997 999999999999988763
No 33
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=98.64 E-value=2.1e-07 Score=74.90 Aligned_cols=78 Identities=18% Similarity=0.110 Sum_probs=56.9
Q ss_pred eEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCccccccccccccccccchhccccchhhhHHHHHHHHH
Q 031643 38 TVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQ 117 (156)
Q Consensus 38 ~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gv~~~l~ 117 (156)
.-.+++|++++.+.+++.++..+.+.+. . . .+++..++..+.
T Consensus 15 ~g~a~aI~~~~~v~v~~~~~~~~~~~~~-----------~----------------------~-----~n~i~~~~~~~~ 56 (261)
T TIGR01920 15 LGGAFGIDLWVEAKVREGDEAGVSTYVR-----------G----------------------N-----PRLIERILTAIR 56 (261)
T ss_pred cceEEEccCceEEEEEECCCCceeeeec-----------C----------------------C-----hHHHHHHHHHHH
Confidence 5678899999999999877654433221 0 0 144556666665
Q ss_pred Hc-CCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 118 SR-GNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 118 ~~-g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
+. +. +.|+++.++++||+ ++|||||||+.+|++.|+
T Consensus 57 ~~~~~--~~g~~i~i~s~iP~-~~GLGSSaA~~~a~~~al 93 (261)
T TIGR01920 57 SKFGI--VDGLEVEVESEIPA-GSGLKSSSALVNALVEAV 93 (261)
T ss_pred HhcCC--CCCEEEEEecCCCC-CCCcchHHHHHHHHHHHH
Confidence 53 33 25899999999997 999999999999988764
No 34
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.59 E-value=9.2e-07 Score=72.36 Aligned_cols=104 Identities=13% Similarity=0.032 Sum_probs=70.3
Q ss_pred EEEEcceeeeec----ccccc-cCCCeEEEeeec-cceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcccccccccc
Q 031643 17 RVVVSPYRICPL----GAHID-HQGGTVSAMTIN-KGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHV 90 (156)
Q Consensus 17 ~~~~APGRv~L~----GEH~d-~~Gg~vla~Ai~-~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~ 90 (156)
+.+.||+||||+ |-.-| ||.=..+-.+|+ .+-.+.+++.++..+++..... +++.
T Consensus 7 ~~~~apaKINL~L~v~~kr~DGyH~l~sl~~~i~~~~D~l~i~~~~~~~i~~~~~~~------~~~~------------- 67 (296)
T PRK14615 7 VTLRSGCKVNLDLRITGVRPDGYHEIDSLFLPLPEPHDELHVRVTDAPGITVTCTIP------DLDP------------- 67 (296)
T ss_pred EEEEecceEEeccccCCcCCCCCcceEEEEEECCCCCcEEEEEECCCCCEEEEECCC------CCCC-------------
Confidence 357999999986 66655 777778888898 5888888776554455432110 0110
Q ss_pred ccccccchhccccchhhhHHHHHHHHHH-cCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 91 VHASDSAKIKEECKWGNYARGALYALQS-RGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 91 ~~~~~~~~~~~~~~w~~y~~gv~~~l~~-~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
. .|.+.-++..+.+ .+.. .|+++.+.++||+ ++|||||+|..+|++.|+
T Consensus 68 -----------~---~Nlv~~a~~~~~~~~~~~--~~~~i~i~k~IP~-~~GLGsgsa~aaa~l~al 117 (296)
T PRK14615 68 -----------E---RNTVTRAYTAFAAATGFR--PPLEVHLRKGIPH-GAGLGGGSADAAALLRHL 117 (296)
T ss_pred -----------C---ccHHHHHHHHHHHHhCCC--CCeEEEEEeCCCC-CCCccHHHHHHHHHHHHH
Confidence 0 2223233344443 3443 5899999999997 999999999999998764
No 35
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.58 E-value=7.3e-07 Score=72.30 Aligned_cols=104 Identities=14% Similarity=0.138 Sum_probs=64.2
Q ss_pred EEEcceeeeec----ccccc-cCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcccccccccccc
Q 031643 18 VVVSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVH 92 (156)
Q Consensus 18 ~~~APGRv~L~----GEH~d-~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 92 (156)
.++||+||||+ |...| ||.=..+=..|+++-.+.+++.++..+++.. +. ..++.
T Consensus 5 ~~~apaKiNl~L~i~~~r~dgyH~l~s~~~~i~l~d~v~v~~~~~~~~~i~~---~~------~~~p~------------ 63 (280)
T PRK14614 5 TLKAPAKVNYRLDVLRRRPDGYHDLRMIMQRVDLCDEIEIALSDGPGIRVTC---GR------EGVPD------------ 63 (280)
T ss_pred EEeecceEEeeeccCCCCCCCcChhheEeEECCCCeEEEEEECCCCCEEEEe---CC------CCCCC------------
Confidence 36899999986 44433 4455566667788887777765432344321 00 01110
Q ss_pred ccccchhccccchhhhH-HHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 93 ASDSAKIKEECKWGNYA-RGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 93 ~~~~~~~~~~~~w~~y~-~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.+ .+.+ +++...+...+.. .|+++.|.++||+ ++|||||||..+|++.|+
T Consensus 64 --------~~---~nl~~~a~~~~~~~~~~~--~~~~i~i~~~IP~-~~GLGsssa~~~a~~~al 114 (280)
T PRK14614 64 --------GP---GNIAWRAADALLDLSGRE--VGIDISITKNIPV-AAGLGGGSSDAATVLMGV 114 (280)
T ss_pred --------CC---CcHHHHHHHHHHHHhCCC--CceEEEEEecCCC-cCccHHHHHHHHHHHHHH
Confidence 00 1222 2333333333443 5899999999997 999999999999998764
No 36
>PLN02451 homoserine kinase
Probab=98.56 E-value=2.5e-07 Score=78.01 Aligned_cols=104 Identities=18% Similarity=0.162 Sum_probs=63.4
Q ss_pred EEEEcceee-eecccccccCCCeEEEeeec-cceEEEEEEcCC---CeEEEEeCCCCCeeEEecCCCCCccccccccccc
Q 031643 17 RVVVSPYRI-CPLGAHIDHQGGTVSAMTIN-KGILLGFVPSGD---TEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV 91 (156)
Q Consensus 17 ~~~~APGRv-~L~GEH~d~~Gg~vla~Ai~-~~~~v~~~~~~d---~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~ 91 (156)
+.++||+++ || |= |--++..|+| ++-.+.+++.++ +.++|.... . . .+.+..
T Consensus 54 ~~~~aPA~~ANL-Gp-----gfD~lG~a~d~l~d~v~~~~~~~~~~~~~~i~~~~-g-~----~~~l~~----------- 110 (370)
T PLN02451 54 VKAFAPATVANL-GP-----GFDFLGCAVDGLGDFVTARVDPGVRPGEVSISEIT-G-D----TGRLSK----------- 110 (370)
T ss_pred EEEEeccchhhc-cc-----ChhhhhhhhccCcCEEEEEECCCCCcccEEEEEec-c-c----cccCCC-----------
Confidence 458999999 86 22 2334555666 888888887653 235554210 0 0 011110
Q ss_pred cccccchhccccchhhhH-HHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 92 HASDSAKIKEECKWGNYA-RGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 92 ~~~~~~~~~~~~~w~~y~-~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.++ .|.+ +++...+...|.+. .|+++.+.++||+ |+|||||||..+|++.|+
T Consensus 111 --------~~~---~Nlv~~a~~~~~~~~g~~~-~gv~I~i~k~IP~-g~GLGSSaA~avA~l~al 163 (370)
T PLN02451 111 --------DPL---RNCAGIAAIATMKLLGIRS-VGLSLSLHKGLPL-GSGLGSSAASAAAAAVAV 163 (370)
T ss_pred --------Ccc---cCcHHHHHHHHHHHcCCCC-CCEEEEEeCCCCC-CCCccHHHHHHHHHHHHH
Confidence 000 1222 33333444456543 5999999999997 999999999999998764
No 37
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.47 E-value=1.7e-06 Score=70.30 Aligned_cols=103 Identities=15% Similarity=0.059 Sum_probs=66.0
Q ss_pred EEEEcceeeeec----ccccc-cCCCeEEEeeeccceEEEEEEcCC-CeEEEEeCCCCCeeEEecCCCCCcccccccccc
Q 031643 17 RVVVSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGD-TEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHV 90 (156)
Q Consensus 17 ~~~~APGRv~L~----GEH~d-~~Gg~vla~Ai~~~~~v~~~~~~d-~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~ 90 (156)
+.+.||+||||+ |-.-| ||.=..+-++++++=.+.+++.++ ..+++... . .++
T Consensus 4 ~~~~apAKINL~L~v~g~r~dGyH~l~s~~~~i~l~D~l~i~~~~~~~~~~~~~~-~---------~~~----------- 62 (283)
T PRK14610 4 FLVKAPAKINLFLHIVGKSESGYHLLESLFVFVNLYDFLEIKIGSKNRGVEFVNS-L---------KIN----------- 62 (283)
T ss_pred eEEeecceEEeeeccCCcCCCCcchhheeeEEcCCCCEEEEEECCCCCeEEEeCC-C---------CCC-----------
Confidence 357899999986 44444 555556666777776666665433 12333210 0 000
Q ss_pred ccccccchhccccchhhhHHHHHHHHHHc-CCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 91 VHASDSAKIKEECKWGNYARGALYALQSR-GNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 91 ~~~~~~~~~~~~~~w~~y~~gv~~~l~~~-g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.+ .|++.-++..+.+. +.. .|+++.+..+||+ ++|||||||-.+|++.+|
T Consensus 63 ----------~~---~Nlv~kA~~~l~~~~~~~--~g~~i~i~K~IP~-~aGLGggSs~aaa~L~~l 113 (283)
T PRK14610 63 ----------RY---NNTVQRAIGLLLRHSPVR--TNVYVKVIKNIPV-SAGLAGGSADAAAVIRLL 113 (283)
T ss_pred ----------CC---CcHHHHHHHHHHHHhCCC--CCeEEEEEcCCCC-CCcCCccHHHHHHHHHHH
Confidence 00 34454555555543 433 4899999999997 999999999999998764
No 38
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=98.45 E-value=1.4e-07 Score=60.45 Aligned_cols=28 Identities=29% Similarity=0.180 Sum_probs=25.5
Q ss_pred EEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 128 IGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 128 ~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
++.++|+||+ ++|||||||+.+|++.++
T Consensus 1 ~i~i~s~iP~-~~GLgSSaa~~~a~~~a~ 28 (67)
T PF00288_consen 1 DIEIDSNIPP-GSGLGSSAALAVALAAAL 28 (67)
T ss_dssp EEEEEESSTT-TSSSSHHHHHHHHHHHHH
T ss_pred CeEEEccCCC-CCcccHHHHHHHHHHHHH
Confidence 5889999997 999999999999998764
No 39
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=98.35 E-value=4.4e-06 Score=69.24 Aligned_cols=104 Identities=20% Similarity=0.193 Sum_probs=66.0
Q ss_pred EEEcceeeee-----cccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcccccccccccc
Q 031643 18 VVVSPYRICP-----LGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVH 92 (156)
Q Consensus 18 ~~~APGRv~L-----~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 92 (156)
.+++|.|+-+ -|.|-=.+||.-++.. +.++.+.+++.++..+++.. .... .+...
T Consensus 2 ~v~~~~rlH~g~~d~~~~~gr~~Gg~G~al~-~~~~~v~v~~~~~~~v~~~~--~~g~------~l~~~----------- 61 (324)
T TIGR00144 2 IINTPSRIHLTLIDLNGSIGRVDGGVGLALE-EPEIVIGLKESDDMGVEFTS--HAEG------KLGEE----------- 61 (324)
T ss_pred eecccccccccccCCCCccCccccceEEEEe-CCcEEEEEEECCCceEEecc--cccc------cccch-----------
Confidence 3789999854 4666667888655544 57888888887766555432 2111 11100
Q ss_pred ccccchhccccchhhhHHHHHHHHH-HcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 93 ASDSAKIKEECKWGNYARGALYALQ-SRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 93 ~~~~~~~~~~~~w~~y~~gv~~~l~-~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.. .+.+..++..+. ..|. .|+++.|.++||+ ++|||||||..+|.+.|+
T Consensus 62 --------~~---~n~~~~~~~~~~~~~g~---~~~~i~i~~~IP~-~~GLGSsaa~avA~~~a~ 111 (324)
T TIGR00144 62 --------YR---RSRIMEAARKTLKHIGS---EGFHFTVRSMFPA-HSGLGSGTQLSLAVGRLV 111 (324)
T ss_pred --------hH---HHHHHHHHHHHHHHhCC---CCEEEEEeecCCC-ccCccHHHHHHHHHHHHH
Confidence 00 122223333333 3342 4899999999997 999999999999988764
No 40
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=98.33 E-value=2.3e-06 Score=70.01 Aligned_cols=46 Identities=17% Similarity=0.035 Sum_probs=34.6
Q ss_pred HHHHHHHHHH-cCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 109 ARGALYALQS-RGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 109 ~~gv~~~l~~-~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
+..++..+.+ .|.+. .|+++.+.++||+ |+|||||||..+|++.|+
T Consensus 63 v~~a~~~~~~~~g~~~-~g~~i~i~~~IP~-~~GLGSSsa~~vA~l~a~ 109 (302)
T TIGR00191 63 IYQVAKRFLDQLGIRM-PPVKVTLEKNIPL-GRGLGSSAAAIVAALAAA 109 (302)
T ss_pred HHHHHHHHHHHcCCCC-CCEEEEEEcCCCC-cCCCChHHHHHHHHHHHH
Confidence 3344444443 45543 5899999999997 999999999999998763
No 41
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.31 E-value=7.2e-06 Score=67.15 Aligned_cols=113 Identities=16% Similarity=0.012 Sum_probs=64.2
Q ss_pred Ecceeeeec----ccccc-cCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCC-eeEEecCCCCCccccccccccccc
Q 031643 20 VSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG-EVRFSIDEIQQPRNSVKKHHVVHA 93 (156)
Q Consensus 20 ~APGRv~L~----GEH~d-~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~ 93 (156)
.||+||||+ |.--| ||.=..+-..|+++=.+.+.+.++..+.+....... ...+-.++++..
T Consensus 2 ~apAKINL~L~I~gkr~dGyH~l~s~~~~i~l~D~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 69 (297)
T PRK14613 2 ISPAKINLGLEIPFKREDGFHEIRSVFLKISWGDDIEIEPAPNGVFELFSTNEIILEKRKLYDQVSER------------ 69 (297)
T ss_pred CCCceEeeeecCCCcCCCCcceeeeEEEEeccCCEEEEEECCCCcEEEEecccccccccccccccCCC------------
Confidence 589999986 55554 566666777777777777765544334443211100 000000001000
Q ss_pred cccchhccccchhhhHHHHHHHHHH-cCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhc
Q 031643 94 SDSAKIKEECKWGNYARGALYALQS-RGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFN 155 (156)
Q Consensus 94 ~~~~~~~~~~~w~~y~~gv~~~l~~-~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~A 155 (156)
... -.|.+.-++..+.+ .+.. .|+++.|.++||+ ++|||||||-.++++.+
T Consensus 70 ------~~~--~~Nlv~ka~~~~~~~~~~~--~~v~I~i~K~IP~-~aGLGggSs~Aaa~l~~ 121 (297)
T PRK14613 70 ------GDI--KQNILYKTFIKARSLFPEL--PGVKIHLTKRISP-AGGLGGGSTNAASLLNF 121 (297)
T ss_pred ------CCc--ccchHHHHHHHHHHHhCCC--CCeEEEEEeCCCc-cCCccccHHHHHHHHHH
Confidence 000 13444444444443 3433 5899999999997 99999999997776544
No 42
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.28 E-value=7.1e-06 Score=67.07 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHc-CCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 106 GNYARGALYALQSR-GNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 106 ~~y~~gv~~~l~~~-g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.|.+.-++..+.+. +.+ .|+++.+..+||+ |+|||||||-.+|++.++
T Consensus 61 ~Nlv~ra~~~l~~~~g~~--~~v~I~i~K~IP~-gaGLGggSS~aAa~L~~l 109 (288)
T PRK00650 61 SNSIWKSVALFRRYTGIT--TPVSWRVVKQIPI-GAGLAGGSSNAATALFAL 109 (288)
T ss_pred ccHHHHHHHHHHHHhCCC--CCeEEEEeeCCCC-cCCcCcchhHHHHHHHHH
Confidence 34444455555543 443 4899999999997 999999999999987653
No 43
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.26 E-value=7.1e-06 Score=65.93 Aligned_cols=94 Identities=16% Similarity=0.095 Sum_probs=65.9
Q ss_pred EEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCccccccccccccccccch
Q 031643 19 VVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAK 98 (156)
Q Consensus 19 ~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 98 (156)
.+|+|-++++---++-.|+ +++||+.+.+.++..++.+ +.-.... +
T Consensus 5 a~A~g~~TIiNAiatG~G~---AfgidL~v~a~v~~~~~~~--~~~~~~~-----d------------------------ 50 (278)
T COG1685 5 ARAYGGGTIINAIATGKGS---AFGIDLKVEAEVRLSDEGK--VRGEPEG-----D------------------------ 50 (278)
T ss_pred EEecCceeEeeehhcCccc---eeeecceEEEEEEEcCccc--cccCCCC-----C------------------------
Confidence 6888888888888877776 7899999999998765221 1100000 0
Q ss_pred hccccchhhhHHHHHHHHHHc-CCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 99 IKEECKWGNYARGALYALQSR-GNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 99 ~~~~~~w~~y~~gv~~~l~~~-g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.+.+.-++..+.+. |.. .|+++.++|+||+ |+||.||+|+..|+..|+
T Consensus 51 -------~~li~~~~~~v~e~~g~~--~~~~v~v~SeiP~-~~GLkSSSA~~nAlv~A~ 99 (278)
T COG1685 51 -------TRLIERCVERVREKYGIP--LGVEVEVESEIPV-GSGLKSSSAASNALVKAV 99 (278)
T ss_pred -------hHHHHHHHHHHHHHcCCC--cceEEEEecCCCc-ccCcchhHHHHHHHHHHH
Confidence 11123445555443 544 4899999999997 999999999999988763
No 44
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.21 E-value=1.2e-05 Score=64.68 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=27.6
Q ss_pred CCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 125 QGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 125 ~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.|+++.++.+||+ |+|||||||-.+|++.++
T Consensus 85 ~gv~I~i~K~IP~-gaGLGggSSdAAA~L~al 115 (257)
T PRK04181 85 KKKAIEVEKNIPT-GAGLGGGSSDAATFLLML 115 (257)
T ss_pred CceEEEEEeCCCC-cCcccccHHHHHHHHHHH
Confidence 4899999999997 999999999999887653
No 45
>PTZ00299 homoserine kinase; Provisional
Probab=98.12 E-value=1.1e-05 Score=67.37 Aligned_cols=102 Identities=14% Similarity=0.096 Sum_probs=62.7
Q ss_pred EEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcccccccccccccccc
Q 031643 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS 96 (156)
Q Consensus 17 ~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 96 (156)
+.+++|.-.-=+|=.-| +|.+|++++..+.+++.+...+++... ... .+...
T Consensus 8 ~~v~vPATsANlGpGFD-----sLGlAL~lyd~v~v~~~~~~~i~i~G~-~~~-------~lp~~--------------- 59 (336)
T PTZ00299 8 VVLRVPATTANIGPAYD-----TLGMALSIFMELTVEHADAFSMTVEGE-GSE-------HISTD--------------- 59 (336)
T ss_pred EEEEEecccccccccHH-----HHhhhcccCcEEEEEECCCCEEEEecC-CcC-------CCCCC---------------
Confidence 45788876655554444 577889999999998765433444211 100 11100
Q ss_pred chhccccchhhhH-HHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhc
Q 031643 97 AKIKEECKWGNYA-RGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFN 155 (156)
Q Consensus 97 ~~~~~~~~w~~y~-~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~A 155 (156)
+ .+.+ +.+...+...+.....|+++.++++||+ ++|||||||..||.+.|
T Consensus 60 ----~----~nlv~~a~~~~~~~~~~~~~~g~~i~i~k~IP~-~~GLGSSsA~avA~l~a 110 (336)
T PTZ00299 60 ----E----DNMVVQACRLAFEEYAHKSMPPLKFIMHSNIPY-GCGCGSSSAAAVAGFVA 110 (336)
T ss_pred ----c----chHHHHHHHHHHHHhcCCCCCceEEEEecCCCc-cCCccHHHHHHHHHHHH
Confidence 0 1222 2333333334432114899999999997 99999999999998865
No 46
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=98.07 E-value=1.7e-05 Score=65.01 Aligned_cols=101 Identities=24% Similarity=0.135 Sum_probs=66.0
Q ss_pred EEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCccccccccccccccccc
Q 031643 18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSA 97 (156)
Q Consensus 18 ~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 97 (156)
.+++|.-.-=+|=..| +|.+|++++-.+.+....| ..++....-. . +.++.
T Consensus 5 ~v~aPASSANlGpGFD-----~lGlAl~~~~~~~v~~~~~-~~~i~~~g~~-~-----~~iP~----------------- 55 (299)
T COG0083 5 KVRVPASSANLGPGFD-----VLGLALDLYNDVVVVEVVD-KFEIEVEGEG-A-----DKIPL----------------- 55 (299)
T ss_pred EEEEeecccccCCCcc-----ceeeeccccCcEEEEEecC-cEEEEEeccc-c-----cCCCC-----------------
Confidence 4677777766665444 6778999999888887766 4555432211 0 11110
Q ss_pred hhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhc
Q 031643 98 KIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFN 155 (156)
Q Consensus 98 ~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~A 155 (156)
.+++ . ..+.+...+.+.|.+. ++.+.++.+||+ |.|||||||-.||-+.|
T Consensus 56 --~~~n--~-~~~~~~~~~~~~~~~~--~~~i~i~k~IP~-~rGLGSSaAsiVAal~a 105 (299)
T COG0083 56 --DPEN--L-VYQAALKFLEALGIEA--GVKIRIEKGIPL-GRGLGSSAASIVAALAA 105 (299)
T ss_pred --Ccce--e-HHHHHHHHHHHhCCCc--cEEEEEEcCCCC-CCCCcHHHHHHHHHHHH
Confidence 1111 1 1245556666667765 499999999997 99999999999987654
No 47
>PRK01212 homoserine kinase; Provisional
Probab=98.00 E-value=3.2e-05 Score=62.95 Aligned_cols=102 Identities=19% Similarity=0.062 Sum_probs=61.5
Q ss_pred EEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCC-C-e--EEEEeCCCCCeeEEecCCCCCcccccccccccc
Q 031643 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGD-T-E--VVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVH 92 (156)
Q Consensus 17 ~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d-~-~--i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 92 (156)
+.+++|+|.-=+|- |.-++.++|+++-.+.+.+.++ . . +++... .. ++++.
T Consensus 4 ~~v~~pat~anlg~-----gfd~lG~al~~~d~l~~~~~~~~~~~~~~~~~~~-~~-------~~~p~------------ 58 (301)
T PRK01212 4 VKVRVPATSANLGP-----GFDSLGLALSLYDEVLVGDVVSVEAEFSIEVIGE-GA-------DKLPL------------ 58 (301)
T ss_pred EEEEEecchhhccc-----ChhhhhccccCccEEEEEEccCCCCceEEEEEec-CC-------CcCCC------------
Confidence 45789998443332 3335677889999999887543 1 2 222211 10 01110
Q ss_pred ccccchhccccchhhhHHHHHHHHHH-cCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 93 ASDSAKIKEECKWGNYARGALYALQS-RGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 93 ~~~~~~~~~~~~w~~y~~gv~~~l~~-~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.++ .+.+.-++..+.+ .+.. .|+++.+.++||+ |+|||||+|..+|++.|+
T Consensus 59 -------~~~---~Nli~~a~~~~~~~~~~~--~~~~I~i~k~IP~-~~GLGssSa~aaA~l~al 110 (301)
T PRK01212 59 -------DPE---KNLVYQAALKFLEKLGKP--PGLRIELEKNIPL-GRGLGSSAASIVAGLVAA 110 (301)
T ss_pred -------CCc---cccHHHHHHHHHHHcCCC--CCeEEEEEeCCCC-CCCCcHHHHHHHHHHHHH
Confidence 000 1223333344443 3543 5899999999997 999999999999998764
No 48
>PRK05905 hypothetical protein; Provisional
Probab=97.76 E-value=0.00029 Score=56.84 Aligned_cols=43 Identities=19% Similarity=0.016 Sum_probs=32.2
Q ss_pred HHHHHHHH-cCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 111 GALYALQS-RGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 111 gv~~~l~~-~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
-++..+.+ .+.. .|+++.+..+||+ |+||||++|=.+|+..+|
T Consensus 72 ka~~~l~~~~~~~--~~~~i~l~K~IP~-~aGLGggSSDAAa~L~~L 115 (258)
T PRK05905 72 KTLEWLRDKYNIK--NHFKIKIKKRIPI-GSGLGSGSSNAAVLMKWI 115 (258)
T ss_pred HHHHHHHHHhCCC--CCeEEEEEeCCCC-cCCCCCCchHHHHHHHHH
Confidence 33444443 3433 5899999999997 999999999888877653
No 49
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=97.68 E-value=7.2e-05 Score=61.63 Aligned_cols=48 Identities=13% Similarity=0.016 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 107 NYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 107 ~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
+.+..++..+.+.... +.++++.+.+++|. ++|||||||..+|++.|+
T Consensus 67 ~~v~~~l~~~~~~~~~-~~~v~I~~~n~iP~-~aGLgSSAA~~aA~~~Al 114 (305)
T TIGR01240 67 EKTSNCLDDFRQLRKE-QEKLHIVSQNNFPT-AAGLASSASGLAALVSAC 114 (305)
T ss_pred HHHHHHHHHHHHhcCC-CCceEEEEecCCCC-CCccchHHHHHHHHHHHH
Confidence 3456677777665322 25899999999996 999999999999988764
No 50
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=97.21 E-value=0.0019 Score=56.73 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=27.7
Q ss_pred hCCCCceeEEEEcceeeeeccccccc-------CCCeEEEeeecc
Q 031643 9 SGRDAEVVRVVVSPYRICPLGAHIDH-------QGGTVSAMTINK 46 (156)
Q Consensus 9 fg~~p~~~~~~~APGRv~L~GEH~d~-------~Gg~vla~Ai~~ 46 (156)
-|..|.- +++-||.||.++|.-.|- ..+.|+.+||.+
T Consensus 565 Pg~g~s~-Viae~PaRiDF~GGW~DTPPiafel~n~AVlglAikl 608 (948)
T KOG4644|consen 565 PGAGPST-VIAEAPARIDFFGGWLDTPPIAFELDNAAVLGLAIKL 608 (948)
T ss_pred CCCCCce-EEEecceeeeecccccCCCCeeEeccccceeeeEEEe
Confidence 3445533 579999999999999884 457778887754
No 51
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=97.01 E-value=0.011 Score=48.54 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHc-CCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhh
Q 031643 107 NYARGALYALQSR-GNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPF 154 (156)
Q Consensus 107 ~y~~gv~~~l~~~-g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~ 154 (156)
|.+.-+...|++. +. ..|++|.++-+||+ |+|||.=+|=..+++.
T Consensus 67 NLv~rAa~ll~~~~~~--~~~v~I~l~K~IPv-~aGLGGGSSdAAa~L~ 112 (289)
T COG1947 67 NLVYRAAELLRKRTGI--AGGVSIHLDKNIPV-GAGLGGGSSDAAAVLV 112 (289)
T ss_pred hHHHHHHHHHHHHhCC--CCCeeEEEEecCcc-cCcCccchHHHHHHHH
Confidence 4444445555543 42 25899999999997 9999865555444443
No 52
>PLN02407 diphosphomevalonate decarboxylase
Probab=96.96 E-value=0.0049 Score=51.60 Aligned_cols=29 Identities=28% Similarity=0.235 Sum_probs=25.2
Q ss_pred EEEEEEe--ccCCCCCCcchHHHHHHHhhhcC
Q 031643 127 IIGYICG--SDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 127 ~~i~i~s--~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
+++.|.| ++|. ++||+||||..+|++.|+
T Consensus 104 ~~~~I~S~N~~Pt-aaGLaSSAs~~aAl~~al 134 (343)
T PLN02407 104 LHVHIASYNNFPT-AAGLASSAAGFACLVFAL 134 (343)
T ss_pred ccEEEEeccCCcc-ccchHHHHHHHHHHHHHH
Confidence 3677777 9996 999999999999998874
No 53
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=96.92 E-value=0.0063 Score=50.80 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=39.1
Q ss_pred EEEcceeeeecccccccCCCe-EEEeeeccceEEEEEEcCC------CeEEEEeCCCCC
Q 031643 18 VVVSPYRICPLGAHIDHQGGT-VSAMTINKGILLGFVPSGD------TEVVLRSGQFDG 69 (156)
Q Consensus 18 ~~~APGRv~L~GEH~d~~Gg~-vla~Ai~~~~~v~~~~~~d------~~i~i~s~~~~~ 69 (156)
+.+||||+-+.|...+..-.+ .+-..++-+.|+.+.|..+ ..+|+.|+.|.+
T Consensus 4 ~~SAPGKvL~aGGYlVLd~~y~glV~gl~Ar~yAi~~p~~~~~g~~~~~VrvkSpQf~d 62 (459)
T KOG4519|consen 4 VASAPGKVLMAGGYLVLDKPYAGLVLGLNARFYAIVKPINEEVGPEWTDVRVKSPQFSD 62 (459)
T ss_pred eecCCCceEEecceEEecCCcceeEEeeeceeEEEeeccccccCCccceeEecCccccc
Confidence 489999999999999984333 2556677888888887543 238888888864
No 54
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=96.92 E-value=0.005 Score=50.14 Aligned_cols=34 Identities=21% Similarity=0.180 Sum_probs=26.6
Q ss_pred EEcceeeeecccccccCC-CeEEEeeeccceEEEE
Q 031643 19 VVSPYRICPLGAHIDHQG-GTVSAMTINKGILLGF 52 (156)
Q Consensus 19 ~~APGRv~L~GEH~d~~G-g~vla~Ai~~~~~v~~ 52 (156)
.+||||+-|+|+.+.+-+ ..+.+.|++++.....
T Consensus 6 fSaPGk~LlaGdYs~lv~glsahaia~nkr~~cs~ 40 (337)
T COG3890 6 FSAPGKLLLAGDYSILVEGLSAHAIAINKRAFCSF 40 (337)
T ss_pred ecCCCceEEeccceeeeecceeeEEEeccccccce
Confidence 699999999998666544 4458888888876665
No 55
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=96.61 E-value=0.013 Score=48.77 Aligned_cols=48 Identities=21% Similarity=0.158 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHHc-CCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 106 GNYARGALYALQSR-GNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 106 ~~y~~gv~~~l~~~-g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
...++-++..+++. |.. .++.+...++.|- ++||+||||...|+++|+
T Consensus 71 ~~k~~~~ld~~R~~~~~~--~~~~i~s~n~~pt-aaGLaSSaag~AAl~~Al 119 (329)
T COG3407 71 NEKARRVLDRFRKEYGIS--FKVKIVSYNNFPT-AAGLASSAAGAAALAAAL 119 (329)
T ss_pred HHHHHHHHHHHHHhhccc--ceEEEEEecCCCc-cccccccHHHHHHHHHHH
Confidence 45577888888853 443 4788888999995 999999999999998874
No 56
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.13 E-value=0.038 Score=44.62 Aligned_cols=30 Identities=23% Similarity=0.097 Sum_probs=27.1
Q ss_pred CCEEEEEEeccCCCCCCcchHHHHHHHhhhc
Q 031643 125 QGIIGYICGSDNLDSSGLSSSAAVSMSFPFN 155 (156)
Q Consensus 125 ~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~A 155 (156)
.|.++.+.|+|| .|.||+||.|=.||++.|
T Consensus 82 ~~i~l~lqSsIP-vgKG~ASSTADl~At~~A 111 (293)
T COG4542 82 TGIDLLLQSSIP-VGKGMASSTADLVATARA 111 (293)
T ss_pred CCeeEEEecccc-ccccccccHHHHHHHHHH
Confidence 579999999999 599999999999988765
No 57
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=93.62 E-value=0.36 Score=39.33 Aligned_cols=93 Identities=18% Similarity=0.253 Sum_probs=58.6
Q ss_pred EEcceeeeec-----ccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCccccccccccccc
Q 031643 19 VVSPYRICPL-----GAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHA 93 (156)
Q Consensus 19 ~~APGRv~L~-----GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 93 (156)
.++|+-|+=| |.-=-..|..-.-.+++.++.+.++..+...+++ +++ ++++..
T Consensus 5 ~fvP~hITgfF~pv~~~~p~~SGSiGaGv~l~~gv~v~v~~~~~~~v~~-----Ng~-~~d~~~---------------- 62 (283)
T COG1829 5 LFVPGHITGFFVPVIGKDPLKSGSIGAGVALERGVTVEVRFGEGTGVRL-----NGK-KIDLPI---------------- 62 (283)
T ss_pred EeccceeEEEEEeccCCCCccCCCcceeEEecCceeEEEEecCCceEEE-----CCe-eccchh----------------
Confidence 5677766522 2222256777788888888888888766533332 211 111110
Q ss_pred cccchhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhc
Q 031643 94 SDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFN 155 (156)
Q Consensus 94 ~~~~~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~A 155 (156)
.+.++..|.. .+..+.+.+++|+ |.|+|-|+|...+.++|
T Consensus 63 ---------------~~~v~e~L~~------~~~~v~~~~~~P~-G~G~G~Sga~AL~~Ala 102 (283)
T COG1829 63 ---------------TRKVIEKLGP------DGVGVRIESPVPL-GCGYGVSGAGALGTALA 102 (283)
T ss_pred ---------------HHHHHHHhCc------cCcceEEEecCCC-CcccchhHHHHHHHHHH
Confidence 1344555433 2467889999998 99999999998887765
No 58
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=89.14 E-value=1.1 Score=37.41 Aligned_cols=30 Identities=20% Similarity=0.102 Sum_probs=24.3
Q ss_pred CEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 126 GIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 126 g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
-++|.-.++.| ..+||.||||=-.|++.||
T Consensus 105 ~lHI~S~nNFP-tAAGLASSAAG~Aalv~al 134 (395)
T KOG2833|consen 105 KLHIASVNNFP-TAAGLASSAAGFAALVLAL 134 (395)
T ss_pred eEEEEecCCCc-chhhhhhhhhhHHHHHHHH
Confidence 36666677999 4999999999888887764
No 59
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=64.69 E-value=6.1 Score=32.68 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=26.5
Q ss_pred CCEEEEEEeccCCCCCCcchHHHHHHHhhhc
Q 031643 125 QGIIGYICGSDNLDSSGLSSSAAVSMSFPFN 155 (156)
Q Consensus 125 ~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~A 155 (156)
.|+++.|.+++|- ..||||-..+..|++.|
T Consensus 70 ~gv~I~I~~~~P~-HvGLGS~TQlaLa~a~a 99 (312)
T COG1907 70 EGVKIEIRSDIPA-HVGLGSTTQLALAVASA 99 (312)
T ss_pred CceEEEEEecCch-hcCCChHHHHHHHHHHH
Confidence 5899999999995 99999999888877765
No 60
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=45.25 E-value=15 Score=30.15 Aligned_cols=25 Identities=20% Similarity=0.225 Sum_probs=21.1
Q ss_pred CEEEEEEeccCCCCCCcchHHHHHHH
Q 031643 126 GIIGYICGSDNLDSSGLSSSAAVSMS 151 (156)
Q Consensus 126 g~~i~i~s~iP~~gaGLgSSAA~~Va 151 (156)
+-.+++..-||. |.|+|||++..++
T Consensus 94 ~Tk~hvtNPipl-grGigssgta~~a 118 (355)
T KOG1537|consen 94 TTKKHVTNPIPL-GRGIGSSGTAKMA 118 (355)
T ss_pred ceeeeecCCccc-cccccchhhhhhh
Confidence 567788889996 9999999987665
No 61
>PF14982 UPF0731: UPF0731 family
Probab=34.92 E-value=16 Score=23.74 Aligned_cols=16 Identities=56% Similarity=0.472 Sum_probs=12.3
Q ss_pred EeccCCCCCCcchHHHH
Q 031643 132 CGSDNLDSSGLSSSAAV 148 (156)
Q Consensus 132 ~s~iP~~gaGLgSSAA~ 148 (156)
+|.|-+ ..||+||||.
T Consensus 17 DS~i~~-e~GLsssaa~ 32 (79)
T PF14982_consen 17 DSSIGL-EPGLSSSAAC 32 (79)
T ss_pred cccccc-Ccccccchhc
Confidence 455665 8999999985
No 62
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=27.14 E-value=1e+02 Score=23.77 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=23.5
Q ss_pred ccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCC
Q 031643 33 DHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFD 68 (156)
Q Consensus 33 d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~ 68 (156)
-|+||.|++|+-..-..++.-.|-.-+....+.||+
T Consensus 5 synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ 40 (204)
T KOG0180|consen 5 SYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQ 40 (204)
T ss_pred eecCceEEEEeCCceEEEEeccccceeeeeeeccch
Confidence 589999999998776666665554333333445665
No 63
>PF07830 PP2C_C: Protein serine/threonine phosphatase 2C, C-terminal domain; InterPro: IPR012911 Protein phosphatase 2C (PP2C) is involved in regulating cellular responses to stress in various eukaryotes. It consists of two domains: an N-terminal catalytic domain and a C-terminal domain characteristic of mammalian PP2Cs. This domain consists of three antiparallel alpha helices, one of which packs against two corresponding alpha-helices of the N-terminal domain. The C-terminal domain does not seem to play a role in catalysis, but it may provide protein substrate specificity due to the cleft that is created between it and the catalytic domain []. ; GO: 0000287 magnesium ion binding, 0004721 phosphoprotein phosphatase activity, 0030145 manganese ion binding; PDB: 2P8E_A 3FXL_A 3FXO_A 1A6Q_A 3FXK_A 3FXM_A 3FXJ_A.
Probab=26.95 E-value=55 Score=21.76 Aligned_cols=16 Identities=25% Similarity=0.171 Sum_probs=10.9
Q ss_pred ccCCCCCCcchHHHHHH
Q 031643 134 SDNLDSSGLSSSAAVSM 150 (156)
Q Consensus 134 ~iP~~gaGLgSSAA~~V 150 (156)
++|| |+||.|=-++.-
T Consensus 61 ~LPP-GGGl~sKr~~Ie 76 (81)
T PF07830_consen 61 GLPP-GGGLASKRSVIE 76 (81)
T ss_dssp S--T-TTTCGGGHHHHH
T ss_pred CCcC-CcCHHHHHHHHH
Confidence 5799 999998776643
No 64
>PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A.
Probab=23.21 E-value=1.3e+02 Score=17.61 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=15.7
Q ss_pred hHHhhhhCCCCceeEEEEcceeee
Q 031643 3 NKVSEMSGRDAEVVRVVVSPYRIC 26 (156)
Q Consensus 3 ~~f~~~fg~~p~~~~~~~APGRv~ 26 (156)
+.|+.+|...|+.+.++. -+||.
T Consensus 1 e~~~~l~~~~~~~i~i~d-~~~i~ 23 (64)
T PF13188_consen 1 ERYRSLFDNSPDGILIID-GGRII 23 (64)
T ss_dssp HHHHHHHCCSSSEEEEEE-TSBEE
T ss_pred CHHHHHHHcCccceEEEE-CCChH
Confidence 578888988888766555 44443
No 65
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=22.38 E-value=59 Score=24.02 Aligned_cols=21 Identities=29% Similarity=0.378 Sum_probs=16.6
Q ss_pred hhhhCCCCceeEEEEcceeeeecccccc
Q 031643 6 SEMSGRDAEVVRVVVSPYRICPLGAHID 33 (156)
Q Consensus 6 ~~~fg~~p~~~~~~~APGRv~L~GEH~d 33 (156)
.+.+|.+|+.+ ++.++|||.|
T Consensus 13 a~~l~v~~~~v-------~~~ViGeHg~ 33 (174)
T PF02866_consen 13 AEKLGVNPSSV-------NAYVIGEHGD 33 (174)
T ss_dssp HHHHTSGGGGE-------EEEEEBSSST
T ss_pred HHHHCcCccce-------EEEEEecCCc
Confidence 35788888753 7789999998
No 66
>CHL00030 rpl23 ribosomal protein L23
Probab=20.19 E-value=77 Score=21.56 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=22.6
Q ss_pred ChhHHhhhhCCCCceeEEEEcceeeeeccc
Q 031643 1 MRNKVSEMSGRDAEVVRVVVSPYRICPLGA 30 (156)
Q Consensus 1 ~~~~f~~~fg~~p~~~~~~~APGRv~L~GE 30 (156)
+++++++.||.+...|-....||+.-=+|.
T Consensus 35 IK~avE~lf~VkV~~VNt~~~~~k~kr~~~ 64 (93)
T CHL00030 35 IKHWIELFFGVKVIAVNSHRLPRKKRRMGP 64 (93)
T ss_pred HHHHHHHHhCCeEEEEEEEEcCCCccccCC
Confidence 468899999999887666677887664444
Done!