Query 031643
Match_columns 156
No_of_seqs 123 out of 1019
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 04:48:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 5E-31 1.7E-35 227.7 14.8 134 1-156 26-174 (520)
2 1pie_A Galactokinase; galactos 100.0 1E-27 3.4E-32 201.6 16.1 134 2-156 35-170 (419)
3 3k85_A D-glycero-D-manno-hepto 100.0 1.6E-27 5.4E-32 197.2 14.5 118 17-156 4-127 (357)
4 1wuu_A Galactokinase; galactos 99.9 3.3E-27 1.1E-31 197.2 15.2 133 2-156 24-160 (399)
5 2a2c_A N-acetylgalactosamine k 99.9 5.9E-27 2E-31 200.3 14.8 133 2-156 43-178 (478)
6 1kvk_A MK, mevalonate kinase; 99.9 6.7E-26 2.3E-30 188.9 11.1 138 17-156 6-157 (395)
7 3k17_A LIN0012 protein; protei 99.9 2.9E-25 9.8E-30 184.3 13.3 119 15-156 5-131 (365)
8 2cz9_A Probable galactokinase; 99.9 5.4E-24 1.8E-28 173.8 9.9 115 17-156 2-116 (350)
9 3gon_A Phosphomevalonate kinas 99.9 2.6E-23 8.9E-28 168.0 11.1 114 16-156 1-118 (335)
10 2pg9_A Phosphomevalonate kinas 99.9 4E-23 1.4E-27 169.5 12.4 109 17-156 4-120 (337)
11 1kkh_A Mevalonate kinase; mixe 99.9 5E-22 1.7E-26 160.4 13.7 119 17-156 6-128 (317)
12 4hac_A Mevalonate kinase; GHMP 99.8 3.7E-21 1.3E-25 156.7 11.2 107 15-156 20-126 (321)
13 2x7i_A Mevalonate kinase; tran 99.8 1.7E-20 5.9E-25 150.8 11.1 107 17-156 7-115 (308)
14 2hfs_A Mevalonate kinase, puta 99.7 6.8E-18 2.3E-22 136.9 10.5 110 17-156 14-126 (332)
15 2oi2_A Mevalonate kinase; enzy 99.7 5.5E-17 1.9E-21 129.0 7.5 97 17-156 6-103 (292)
16 2ww4_A 4-diphosphocytidyl-2C-m 99.7 1.4E-16 4.9E-21 127.6 9.4 103 18-156 4-118 (283)
17 2v8p_A 4-diphosphocytidyl-2-C- 99.6 1.2E-15 4.2E-20 121.1 9.2 101 16-156 4-110 (271)
18 2gs8_A Mevalonate pyrophosphat 99.5 3.2E-15 1.1E-19 120.9 5.0 113 17-156 9-121 (317)
19 1uek_A 4-(cytidine 5'-diphosph 99.5 4.2E-14 1.4E-18 112.2 7.4 95 21-156 5-105 (275)
20 1h72_C HK, homoserine kinase; 99.5 2E-13 6.8E-18 108.8 11.2 101 17-156 3-105 (296)
21 3qt5_A Mevalonate diphosphate 99.5 7.9E-14 2.7E-18 114.2 7.6 113 17-156 10-123 (332)
22 3pyf_A 4-diphosphocytidyl-2-C- 99.3 5.9E-11 2E-15 96.0 11.9 106 17-156 6-117 (306)
23 1fi4_A Mevalonate 5-diphosphat 98.9 1.6E-09 5.4E-14 91.1 7.2 107 17-156 26-152 (416)
24 3hul_A HSK, HK, homoserine kin 98.6 1.5E-07 5.1E-12 75.6 9.3 98 17-156 3-100 (298)
25 2hke_A Diphosphomevalonate dec 98.1 2.7E-05 9.1E-10 64.4 11.4 89 35-156 32-126 (380)
26 3lto_A Mevalonate diphosphate 97.5 0.00013 4.5E-09 59.4 5.3 28 125-153 91-118 (323)
27 3f0n_A Mevalonate pyrophosphat 97.5 0.00033 1.1E-08 58.8 7.8 31 125-156 122-152 (414)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=99.97 E-value=5e-31 Score=227.65 Aligned_cols=134 Identities=18% Similarity=0.220 Sum_probs=106.5
Q ss_pred ChhHHhhhhCCCCceeEEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEc--CCCeEEEEeCCCCC-eeEEec--
Q 031643 1 MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPS--GDTEVVLRSGQFDG-EVRFSI-- 75 (156)
Q Consensus 1 ~~~~f~~~fg~~p~~~~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~--~d~~i~i~s~~~~~-~~~~~l-- 75 (156)
+++.|++.||.+|+ .+++|||||||+||||||+||+||||||+++|+++++++ +|++++|++.+... ..+|++
T Consensus 26 l~~~F~~~fg~~p~--~v~~APGRVnLiGEHtDyngG~VLp~AI~~~~~vav~~~~~~d~~i~i~S~~~~~~~~~~~l~~ 103 (520)
T 3v2u_C 26 VVDAFFQTYHVKPD--FIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPSITLTNADPKFAQRKFDLPL 103 (520)
T ss_dssp HHHHHHHHHSSCCS--EEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECCCSSCEEEEEESSTTSCCEEEECCT
T ss_pred HHHHHHHHhCCCCC--EEEEcceeEEEeccCeeeCCCEEEEEEeecceEEEEEeccCCCCEEEEEECCCCCCceEEEecc
Confidence 35789999999997 679999999999999999999999999999999999998 78899999877542 356776
Q ss_pred CCCCCccccccccccccccccchhccccchhhhHHHHHH----HHHHc------CCCCCCCEEEEEEeccCCCCCCcchH
Q 031643 76 DEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALY----ALQSR------GNNLTQGIIGYICGSDNLDSSGLSSS 145 (156)
Q Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gv~~----~l~~~------g~~~~~g~~i~i~s~iP~~gaGLgSS 145 (156)
++.... ++ .....|.+|++|++. .+.+. |..+ .||+++|+|+||+ |+|| |
T Consensus 104 ~~~~~~---------------i~-~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g~~~-~G~~i~i~s~vP~-gsGL--S 163 (520)
T 3v2u_C 104 DGSYMA---------------ID-PSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPL-VGAQIFCQSDIPT-GGGL--S 163 (520)
T ss_dssp TCCCCC---------------CC-TTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSSCC-CCEEEEEEECCCT-TSSH--H
T ss_pred Cccccc---------------cC-cccccHHHHHHHHHHHHHHHHHhhcccccccCCC-CceEEEEecCCCC-CCCH--H
Confidence 321000 00 245689999998653 34432 3455 7999999999997 9999 9
Q ss_pred HHHHHHhhhcC
Q 031643 146 AAVSMSFPFNI 156 (156)
Q Consensus 146 AA~~Va~~~Al 156 (156)
||++||++.|+
T Consensus 164 AA~~va~~~Al 174 (520)
T 3v2u_C 164 SAFTCAAALAT 174 (520)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988763
No 2
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=99.95 E-value=1e-27 Score=201.57 Aligned_cols=134 Identities=32% Similarity=0.457 Sum_probs=112.5
Q ss_pred hhHHhhhhCCCCceeEEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCC--CeeEEecCCCC
Q 031643 2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFD--GEVRFSIDEIQ 79 (156)
Q Consensus 2 ~~~f~~~fg~~p~~~~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~--~~~~~~l~~l~ 79 (156)
++.|++.||.+|+ ++.++|||||+|+|||+||||+.+|++||++++++.+++++++.+++.+.+++ ...+++++++.
T Consensus 35 ~~~f~~~~g~~~~-~~~~~APgkv~L~Geh~d~~G~~~l~~aI~l~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 113 (419)
T 1pie_A 35 TEKFAEVFGDTKE-VEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYSENFPKLGVIEFDLDEVE 113 (419)
T ss_dssp HHHHHHHHSCCCS-CEEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEECSSSEEEEEETTCGGGCCEEEETTCTT
T ss_pred HHHHHHHhCCCCc-eEEEEeeEEEEEcccceeeCCCEEEEEEEcccEEEEEEECCCCEEEEEECCCCCcceeEEeccccc
Confidence 5789999998886 24689999999999999999999999999999999999988888888876653 23456666542
Q ss_pred CccccccccccccccccchhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 80 QPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
. .+...|.+|+++++..+.+.+..++.|+++.++++||+ |+|||||||++||++.|+
T Consensus 114 ~-------------------~~~~~~~n~v~~~~~~l~~~g~~~~~g~~i~i~s~IP~-gaGLGSSaA~~vA~~~al 170 (419)
T 1pie_A 114 K-------------------KDGELWSNYVKGMIVMLKGAGYEIDKGFELLIKGEIPT-ASGLSSSASLELLVGVVL 170 (419)
T ss_dssp S-------------------CCTTCTHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCT-TSSSCHHHHHHHHHHHHH
T ss_pred C-------------------CCCcCHHHHHHHHHHHHHHhCCCCCCCEEEEEECCCCC-CCChhHHHHHHHHHHHHH
Confidence 1 13468999999999998877655546999999999997 999999999999998764
No 3
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.6e-27 Score=197.21 Aligned_cols=118 Identities=13% Similarity=0.033 Sum_probs=102.0
Q ss_pred EEEEcceeeeeccccccc------CCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcccccccccc
Q 031643 17 RVVVSPYRICPLGAHIDH------QGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHV 90 (156)
Q Consensus 17 ~~~~APGRv~L~GEH~d~------~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~ 90 (156)
++++|||||+|+|||+|| +||+||++|||+++++.+++++|+++++.+.+++...++++++.
T Consensus 4 i~~~APgRvnL~GehtD~~~~~~~~gG~vl~~AId~~~~v~i~~~~d~~i~i~s~~~~~~~~~~~~~~------------ 71 (357)
T 3k85_A 4 VRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEINAYDAQCCKSYLSMSQ------------ 71 (357)
T ss_dssp EEEEEEEEEEEECTTTTSTTHHHHTCEEEEEEEEEEEEEEEEEECSSSEEEEEETTTTEEEEEECCSS------------
T ss_pred EEEECceEEEEecCCccCcchhhcCCCEEEEEEEeCcEEEEEEECCCCeEEEEECCCCceEEEecccc------------
Confidence 578999999999999999 99999999999999999999999999999988875555665541
Q ss_pred ccccccchhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 91 VHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 91 ~~~~~~~~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.+...|.+|+++++..+.+.+.....||++.+.++||+ |+|||||||++||++.|+
T Consensus 72 ---------~~~~~~~~~v~~~~~~l~~~~~~~~~g~~i~i~~~iP~-g~GLgSSaa~~va~~~al 127 (357)
T 3k85_A 72 ---------LEIDGEASLIKGVYNRIIRDYRLEPKSFKITTYNDAPA-GSGLGTSSTMVVCILKAF 127 (357)
T ss_dssp ---------CCCCSSSHHHHHHHHHHHHHTTCCCCCEEEEEEESSCS-SSSSCHHHHHHHHHHHHH
T ss_pred ---------ccccchHHHHHHHHHHHHHhcCCCCCCEEEEEecCCCC-CCCchHHHHHHHHHHHHH
Confidence 13468999999999999877653126999999999997 999999999999998764
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=99.95 E-value=3.3e-27 Score=197.15 Aligned_cols=133 Identities=26% Similarity=0.339 Sum_probs=109.1
Q ss_pred hhHHhhhhCCCCceeEEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCe----eEEecCC
Q 031643 2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGE----VRFSIDE 77 (156)
Q Consensus 2 ~~~f~~~fg~~p~~~~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~----~~~~l~~ 77 (156)
++.|++.||.+|+ +.++|||||+|+|||+||+|+.+|++||++++++.+++++++.+++.+.+++.. .+++++.
T Consensus 24 ~~~f~~~~~~~~~--~~~~APgkv~L~Geh~Dy~~~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 101 (399)
T 1wuu_A 24 RRAFREEFGAEPE--LAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPT 101 (399)
T ss_dssp HHHHHHHHSSCCS--EEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEETTCEEEEEECCSSSCSCSEEEEECCC
T ss_pred HHHHHHHhCCCCC--EEEEeeeeEEEeccccccCCCEEEeEEecccEEEEEEECCCCeEEEEECCCCCccccceEEecCc
Confidence 5789999998886 679999999999999999999999999999999999999888899988766421 2455542
Q ss_pred CCCccccccccccccccccchhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 78 IQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
+... .......|.+|+++++..+ .+..+ .|+++.++++||+ |+|||||||++||++.|+
T Consensus 102 ~~~~----------------~~~~~~~~~n~v~~a~~~l--~~~~~-~g~~i~i~s~IP~-gaGLGSSaA~~vA~~~al 160 (399)
T 1wuu_A 102 AQRS----------------LEPGTPRWANYVKGVIQYY--PAAPL-PGFSAVVVSSVPL-GGGLSSSASLEVATYTFL 160 (399)
T ss_dssp SSCC----------------CCCCSSGGGHHHHHHHHHC--SSSCC-CEEEEEEEECSCT-TSSSCHHHHHHHHHHHHH
T ss_pred cccc----------------cccCCCCHHHHHHHHHHHh--cCCCC-CCeEEEEECCCCC-CCCccHHHHHHHHHHHHH
Confidence 2110 0024567999999999887 45555 6999999999997 999999999999998764
No 5
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=99.94 E-value=5.9e-27 Score=200.34 Aligned_cols=133 Identities=27% Similarity=0.296 Sum_probs=104.7
Q ss_pred hhHHhhhhCCCCceeEEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCC-eeEEecCCCCC
Q 031643 2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG-EVRFSIDEIQQ 80 (156)
Q Consensus 2 ~~~f~~~fg~~p~~~~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~-~~~~~l~~l~~ 80 (156)
++.|++.||.+|+ ++++||||++|+|||+||+|+.+|++||++++++.+++++++.+++.+.+.+. ..+++++++..
T Consensus 43 ~~~f~~~fg~~~~--~~~~APgrv~L~Geh~D~~g~~vl~~AI~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~l~~ 120 (478)
T 2a2c_A 43 KEMFNSKFGSIPK--FYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLANTNPLYPDFSTSANNIQI 120 (478)
T ss_dssp HHHHHHHHSSCCS--EEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECSSSCEEEEESSTTSCCEEECCCCC--
T ss_pred HHHHHHHhCCCCC--EEEEeceEEEEeccceeeCCCeEEEEEecccEEEEEEECCCCeEEEEECCCCCcceeccchhccc
Confidence 5789999999887 68999999999999999999999999999999999999988889988765431 23333343321
Q ss_pred ccccccccccccccccchhccccchhhhHHHHHHHHHHc-CC-CCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 81 PRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSR-GN-NLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gv~~~l~~~-g~-~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
......|.+|+.+.+..+.+. +. .. .||++.++|+||+ |+|||||||++||++.|+
T Consensus 121 ------------------~~~~~~~~n~v~~a~~~v~~~~~~~~~-~g~~i~i~s~IP~-g~GLgSSAA~~va~~~al 178 (478)
T 2a2c_A 121 ------------------DKTKPLWHNYFLCGLKGIQEHFGLSNL-TGMNCLVDGNIPP-SSGLSSSSALVCCAGLVT 178 (478)
T ss_dssp ------------------CCSSCCHHHHHHHHHHHHHHHTTCCSC-CCEEEEEEECSCT-TSSSCHHHHHHHHHHHHH
T ss_pred ------------------CCCcccHHHHHHHHHHHHHHHHhccCC-CceEEEEECCCCC-CCCchHHHHHHHHHHHHH
Confidence 024568999996555544332 22 13 6999999999997 999999999999998764
No 6
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.93 E-value=6.7e-26 Score=188.89 Aligned_cols=138 Identities=17% Similarity=0.140 Sum_probs=95.5
Q ss_pred EEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcccc-cccc-----cc
Q 031643 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNS-VKKH-----HV 90 (156)
Q Consensus 17 ~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~-~~~~-----~~ 90 (156)
++++|||||+|+|||+||||++||++||++++++.+++++++.+++.+.+++...+|+++++.....+ .... ..
T Consensus 6 ~~~~APgrv~L~Geh~d~~g~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
T 1kvk_A 6 LLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVATLQLLDTGFLEQGDVPAPTL 85 (395)
T ss_dssp EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSSSEEEEEETTTTEEEEEEHHHHHTSCC-------------
T ss_pred EEEEeCeEEEEecCCeeeECCEeeeeEeeccEEEEEEECCCCeEEEEcCCCCceEEEEhHhhhhhhcccccccccccccH
Confidence 67999999999999999999999999999999999999998899998877654456666553211000 0000 00
Q ss_pred ccccccchhccccchhhh-----HHHHHHHHHHc-CC--CCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 91 VHASDSAKIKEECKWGNY-----ARGALYALQSR-GN--NLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 91 ~~~~~~~~~~~~~~w~~y-----~~gv~~~l~~~-g~--~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
..............|.+| +++++..+.+. +. .. .||++.++++||+ |+|||||||++||++.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~-~g~~i~i~s~iP~-g~GLGSSaA~~va~~~al 157 (395)
T 1kvk_A 86 EQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTL-PSLDIMVWSELPP-GAGLGSSAAYSVCVAAAL 157 (395)
T ss_dssp ---CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSC-CCEEEEEEESSCT-TSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccchhhHHHHHHHHHHHHHHhccccCC-CCEEEEEEecCCC-CCCccHHHHHHHHHHHHH
Confidence 000000000113479999 34444444432 33 13 6999999999997 999999999999998764
No 7
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.93 E-value=2.9e-25 Score=184.29 Aligned_cols=119 Identities=20% Similarity=0.175 Sum_probs=93.4
Q ss_pred eeEEEEcceeeeeccccccc-CCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCccccccccccccc
Q 031643 15 VVRVVVSPYRICPLGAHIDH-QGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHA 93 (156)
Q Consensus 15 ~~~~~~APGRv~L~GEH~d~-~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 93 (156)
.++.++|||||+|+|||+|| +|++||++||++++++.++++++. +|.+.+++...+|+++....
T Consensus 5 ~~i~~~APGrv~L~GEh~~~~~g~~~l~~Ai~~~~~v~v~~~~~~--~i~s~~~~~~~~~~~~~~~~------------- 69 (365)
T 3k17_A 5 NKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERN--ELWIPHYENPVSWPIGGELK------------- 69 (365)
T ss_dssp CCEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSC--EEECTTCSSCBCCCTTSCCC-------------
T ss_pred eEEEEEecceEEEecccEEecCCCEEEEEEccCcEEEEEEECCCc--EEEecCCCcceeeecccCCC-------------
Confidence 35679999999999999999 599999999999999999999875 57777775433444332100
Q ss_pred cccchhccccchhhhHHHHHHHHH----HcCCCCCCCEEEEEEeccCC---CCCCcchHHHHHHHhhhcC
Q 031643 94 SDSAKIKEECKWGNYARGALYALQ----SRGNNLTQGIIGYICGSDNL---DSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 94 ~~~~~~~~~~~w~~y~~gv~~~l~----~~g~~~~~g~~i~i~s~iP~---~gaGLgSSAA~~Va~~~Al 156 (156)
.....| +|+++++..+. +.|... .||++.|+|+||+ .++|||||||++||++.|+
T Consensus 70 ------~~~~~~-~yv~~~i~~~~~~~~~~g~~~-~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al 131 (365)
T 3k17_A 70 ------PDGEHW-TFTAEAINIATTFLKSEGIEL-TPVKMVIETELIDQSGAKYGLGSSAAATVAVINAL 131 (365)
T ss_dssp ------CSCGGG-HHHHHHHHHHHHHHHHTTCCC-CCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHH
T ss_pred ------CCCChH-HHHHHHHHHHHHHHHhcCCCC-CCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHH
Confidence 134567 99999987654 356666 6999999999995 0459999999999998774
No 8
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.90 E-value=5.4e-24 Score=173.77 Aligned_cols=115 Identities=27% Similarity=0.373 Sum_probs=92.3
Q ss_pred EEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcccccccccccccccc
Q 031643 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS 96 (156)
Q Consensus 17 ~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 96 (156)
+.++|||||+|+|||+||||+.++++||++++++.+++++++.+++.+.+.+. ..+. +..
T Consensus 2 ~~~~aP~ki~L~Ge~~d~~~~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~~~~--~~~~--l~~---------------- 61 (350)
T 2cz9_A 2 IKVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIEAEKHGEVILYSEHFGEER--KFSL--NDL---------------- 61 (350)
T ss_dssp EEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEESSEEEEETTTTEEE--EECT--TCC----------------
T ss_pred eEEEeccEEEEeecChhhCCCEEEEEEeeceEEEEEEECCCCeEEEEECCCCc--cccc--cCC----------------
Confidence 46899999999999999999999999999999999999877667765433211 1110 100
Q ss_pred chhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 97 AKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 97 ~~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.+...|.+|+++++..+.+.+... .|+++.++++||+ |+|||||||+.||++.|+
T Consensus 62 ---~~~~~~~~~~~~~~~~l~~~~~~~-~g~~i~i~s~IP~-g~GLGSSaA~~vA~~~al 116 (350)
T 2cz9_A 62 ---RKENSWIDYVKGIFWVLKESDYEV-GGIKGRVSGNLPL-GAGLSSSASFEVGILETL 116 (350)
T ss_dssp ---CCCSSTHHHHHHHHHHHHHTTCCC-CEEEEEEECSCCT-TSSSCHHHHHHHHHHHHH
T ss_pred ---CCCCcHHHHHHHHHHHHHhcCCCC-CCeEEEEECCCCC-CCCcchHHHHHHHHHHHH
Confidence 124679999999988887766655 6999999999997 999999999999998764
No 9
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.89 E-value=2.6e-23 Score=168.03 Aligned_cols=114 Identities=18% Similarity=0.043 Sum_probs=88.9
Q ss_pred eEEEEcceeeeecccccccC-CCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcccccccccccccc
Q 031643 16 VRVVVSPYRICPLGAHIDHQ-GGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHAS 94 (156)
Q Consensus 16 ~~~~~APGRv~L~GEH~d~~-Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 94 (156)
|+.++|||||+|+|||+++| |+++|++||++++++.++++++.+ |++..++... ++.. .
T Consensus 1 mi~v~apGKviL~GEhaVv~~G~~Ala~ai~~~~~v~i~~~~~~~--i~~~~~~~~~--~~~~---~------------- 60 (335)
T 3gon_A 1 MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYR--IYSDMFDFAV--DLRP---N------------- 60 (335)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCE--EEETTSSSCB--CSSC---C-------------
T ss_pred CEEEEECCEEEEEeeeeEEcCCCcEEEEEecceEEEEEEECCCCE--EEEeCCCccc--ccCc---C-------------
Confidence 35689999999999999998 999999999999999999988764 4554443211 1110 0
Q ss_pred ccchhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCC---CCcchHHHHHHHhhhcC
Q 031643 95 DSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDS---SGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 95 ~~~~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~g---aGLgSSAA~~Va~~~Al 156 (156)
.+..-|..+++.+...+.+.+..+ .||++.|+|++|. + +|||||||++||++.||
T Consensus 61 -----~~~~~~~~~i~~~~~~l~~~~~~~-~~~~i~I~s~lp~-~~~~~GLgSSaa~~va~~~al 118 (335)
T 3gon_A 61 -----PDYSLIQETIALMGDFLAVRGQNL-RPFSLAIYGKMER-EGKKFGLGSSGSVVVLVVKAL 118 (335)
T ss_dssp -----TTTHHHHHHHHHHHHHHHHTTCCC-CCEEEEEECCSEE-TTEECSSCHHHHHHHHHHHHH
T ss_pred -----CCcHHHHHHHHHHHHHHHHcCCCC-CceEEEEEecCCc-ccCCCCcchHHHHHHHHHHhh
Confidence 122345667777777787778777 7999999999996 7 59999999999998764
No 10
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.89 E-value=4e-23 Score=169.55 Aligned_cols=109 Identities=18% Similarity=0.119 Sum_probs=87.9
Q ss_pred EEEEcceeeeeccccc-ccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCccccccccccccccc
Q 031643 17 RVVVSPYRICPLGAHI-DHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASD 95 (156)
Q Consensus 17 ~~~~APGRv~L~GEH~-d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 95 (156)
+.++|||||+|+|||+ ||.|++||++||++++++.++++++ ++|.+..++.. ++.
T Consensus 4 i~~~aPgkv~L~GeH~v~y~G~~~l~~Ai~~~~~v~v~~~~~--~~i~s~~~~~~----~~~------------------ 59 (337)
T 2pg9_A 4 IAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDS--YRIYSDMFDFA----VDL------------------ 59 (337)
T ss_dssp EEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSS--CEEEETTSSSC----BCS------------------
T ss_pred EEEeeCceEEEeccceEecCCCEEEEEEccccEEEEEEeCCc--EEEecCCCCce----eee------------------
Confidence 5689999999999999 5559999999999999999998864 67877665431 111
Q ss_pred cchhccccchhhhHHHHHHHHHH----cCCCCCCCEEEEEEeccCCCC---CCcchHHHHHHHhhhcC
Q 031643 96 SAKIKEECKWGNYARGALYALQS----RGNNLTQGIIGYICGSDNLDS---SGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 96 ~~~~~~~~~w~~y~~gv~~~l~~----~g~~~~~g~~i~i~s~iP~~g---aGLgSSAA~~Va~~~Al 156 (156)
.+..+| +|+++++..+.+ .|... .||++.++|+||+ | +|||||||++||++.|+
T Consensus 60 ----~~~~~~-~~v~~~i~~~~~~~~~~g~~~-~g~~i~i~s~iP~-~g~k~GLgSSaa~~va~~~al 120 (337)
T 2pg9_A 60 ----RPNPDY-SLIQETIALMGDFLAVRGQNL-RPFSLAIYGKMER-EGKKFGLGSSGSVVVLVVKAL 120 (337)
T ss_dssp ----SCCTTT-HHHHHHHHHHHHHHHHTTCCC-CCEEEEEECCSEE-TTEECSSCHHHHHHHHHHHHH
T ss_pred ----cCCCCc-HHHHHHHHHHHHHHHhcCCCC-CCEEEEEEccCCC-CCCCccccHHHHHHHHHHHHH
Confidence 133467 799888877643 36665 6999999999997 9 99999999999998764
No 11
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.88 E-value=5e-22 Score=160.43 Aligned_cols=119 Identities=17% Similarity=0.253 Sum_probs=92.5
Q ss_pred EEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcccccccccccccccc
Q 031643 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS 96 (156)
Q Consensus 17 ~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 96 (156)
+.++|||||+|+|||+|++|+.++++||++++++.++++++..+++...+++...+|++++.. +
T Consensus 6 ~~~~APgki~L~geh~~~~G~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~-~--------------- 69 (317)
T 1kkh_A 6 MIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNEIK-N--------------- 69 (317)
T ss_dssp EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECCSSEEEEEETTTTEEEEEETTTGG-G---------------
T ss_pred EEEEccEEEEEEcCCeeEcCCEEEEEEecCeEEEEEEECCCCeEEEEeCCCCCceEEEeccCC-c---------------
Confidence 578999999999999999999999999999999999998877888887665544455554311 0
Q ss_pred chhccccchhhhHHHHHHHHHH----cCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 97 AKIKEECKWGNYARGALYALQS----RGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 97 ~~~~~~~~w~~y~~gv~~~l~~----~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
....+| ++++.++..+.. .+.....|+++.++++||+ |+|||||||+.+|++.|+
T Consensus 70 ---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~~~iP~-~~GLGsSsa~~~a~~~al 128 (317)
T 1kkh_A 70 ---INPNNF-GDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPI-SCGLGSSASITIGTIKAV 128 (317)
T ss_dssp ---CCGGGS-GGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCS-SSSSCHHHHHHHHHHHHH
T ss_pred ---cCcccc-hHHHHHHHHHHHHHHhhcccCCCCeEEEEecCCCC-CCCchHHHHHHHHHHHHH
Confidence 123456 666666666643 2332226999999999997 999999999999998764
No 12
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.85 E-value=3.7e-21 Score=156.75 Aligned_cols=107 Identities=17% Similarity=0.142 Sum_probs=82.0
Q ss_pred eeEEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcccccccccccccc
Q 031643 15 VVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHAS 94 (156)
Q Consensus 15 ~~~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 94 (156)
+++.++|||||||+|||+||+|+.+|++||++++++.+++.++ +++.+.+.. +.+.
T Consensus 20 ~mi~~~APgkinL~GeH~~~~Gg~~l~~aI~~~~~v~v~~~~~--i~i~~~~~~-------~~~~--------------- 75 (321)
T 4hac_A 20 HMVSCSAPGKIYLFGEHAVVYGETAIACAVELRTRVRAELNDS--ITIQSQIGR-------TGLD--------------- 75 (321)
T ss_dssp CCEEEEEEEEEEEECTTTGGGTCCEEEEEEEEEEEEEEEECSS--EEEEETTEE-------ESSC---------------
T ss_pred CEEEEEeeEEEEEEccCEEEcCCEEEEEEeccCEEEEEEECCC--EEEEECCCC-------cccc---------------
Confidence 5678999999999999999999999999999999999998653 777764320 1111
Q ss_pred ccchhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 95 DSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 95 ~~~~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
....+|..| +...+...+ .. .|+++.++++||+ |+|||||||+.||++.|+
T Consensus 76 -----~~~~~~~~~---~~~~l~~~~-~~-~g~~i~i~~~iP~-g~GLGSSsa~~va~~~al 126 (321)
T 4hac_A 76 -----FEKHPYVSA---VIEKMRKSI-PI-NGVFLTVDSDIPV-GSGLGSSAAVTIASIGAL 126 (321)
T ss_dssp -----TTTSHHHHH---HHHHHTTTS-CC-CCEEEEEEECCCS-CTTCCHHHHHHHHHHHHH
T ss_pred -----cchhHHHHH---HHHHHHHhC-CC-CCEEEEEECCCCC-CCCccHHHHHHHHHHHHH
Confidence 012245544 444444444 23 6999999999997 999999999999998763
No 13
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.83 E-value=1.7e-20 Score=150.84 Aligned_cols=107 Identities=21% Similarity=0.164 Sum_probs=85.6
Q ss_pred EEEEcceeeeecccccccCCCeEEEeeeccc-eEEEEEEcCCCe-EEEEeCCCCCeeEEecCCCCCcccccccccccccc
Q 031643 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKG-ILLGFVPSGDTE-VVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHAS 94 (156)
Q Consensus 17 ~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~-~~v~~~~~~d~~-i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 94 (156)
..++|||||||+|||+||+|+.+++++|+++ +++.+++++++. +++.+.+++. ++.
T Consensus 7 ~~~~APgkinL~Ge~~d~~g~~~l~~ai~~~~~~v~v~~~~~~~~i~~~~~~~~~-------~~~--------------- 64 (308)
T 2x7i_A 7 GYGESTGKIILIGEHAVTFGEPAIAVPFNAGKIKVLIEALESGNYSSIKSDVYDG-------MLY--------------- 64 (308)
T ss_dssp EEEEEEEEEEEEEBTTCCTTSCEEEEEEEEEEEEEEEEECCTTCCCEEEEEECSS-------CCC---------------
T ss_pred eEEEEeeEEEEEecCeeecCCeEEEEEEcCCEEEEEEEECCCCCeeEEEecCCCC-------Chh---------------
Confidence 5689999999999999999999999999985 999999987655 6655432210 111
Q ss_pred ccchhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 95 DSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 95 ~~~~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
....|.+|+++++..+.+. . .|+++.++++||+ |+|||||||+.+|++.|+
T Consensus 65 ------~~~~~~~~v~~~~~~~~~~---~-~g~~i~i~~~iP~-g~GLGSSsa~~~a~~~al 115 (308)
T 2x7i_A 65 ------DAPDHLKSLVNRFVELNNI---T-EPLAVTIQTNLPP-SRGLGSSAAVAVAFVRAS 115 (308)
T ss_dssp ------CTTSCHHHHHHHHHHHTTC---C-SCEEEEEEECCCT-TSSSCHHHHHHHHHHHHH
T ss_pred ------hhhHHHHHHHHHHHHHHhh---C-CCeEEEEeccCCC-CCCccHHHHHHHHHHHHH
Confidence 1236889999988877542 3 4899999999997 999999999999998764
No 14
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.74 E-value=6.8e-18 Score=136.94 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=77.6
Q ss_pred EEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcC-CCeEEEEeCCCCCeeEEecCCCCCccccccccccccccc
Q 031643 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSG-DTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASD 95 (156)
Q Consensus 17 ~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~-d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 95 (156)
..++|||||+|+|||+|++|+.+++++|++++++.+++++ +..+++.+.+. .+...
T Consensus 14 ~~~~ApgKi~L~Geh~~~~G~~~l~~ai~~~~~v~v~~~~~~~~~~~~~~~~---------~~~~~-------------- 70 (332)
T 2hfs_A 14 GKNIGYGKVILFGEHFVVHGAEAIVAGISEYTECRLEINPGVPGLQVDDQRP---------AIPGY-------------- 70 (332)
T ss_dssp SCCEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEETTCCSEEEEECCC---------CCTTH--------------
T ss_pred EEEEEeEEEEEecCCEEEcCCeEEEEEecccEEEEEEEcCCCCCeEEEecCc---------ccccc--------------
Confidence 4689999999999999999999999999999999999874 34455533211 11100
Q ss_pred cchhccccchhhhH-HHHHHHHHHcCCCC-CCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 96 SAKIKEECKWGNYA-RGALYALQSRGNNL-TQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 96 ~~~~~~~~~w~~y~-~gv~~~l~~~g~~~-~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.....+.+ +++...+...+... ..|+++.+.++||+ |+|||||||+.+|++.|+
T Consensus 71 ------~~~~~~~~~~a~~~~~~~~g~~~~~~g~~i~i~~~iP~-g~GLGSSsA~~~a~~~al 126 (332)
T 2hfs_A 71 ------IAQKRDEQIKAHQLVLDHLKVDLSGDGLKMFIGGPLVP-SSGIGASASDVVAFSRAL 126 (332)
T ss_dssp ------HHHHHHHHHHHHHHHHHHTTBCCSSSEEEEEEECSCCC-CTTSCHHHHHHHHHHHHH
T ss_pred ------ccccchhHHHHHHHHHHHcCCccCCCceEEEEEcCCCC-CCCccHHHHHHHHHHHHH
Confidence 00011222 33333344445432 15899999999997 999999999999998764
No 15
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.68 E-value=5.5e-17 Score=129.03 Aligned_cols=97 Identities=19% Similarity=0.078 Sum_probs=67.4
Q ss_pred EEEEcceeeeecccccccCCCeEEEeee-ccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCccccccccccccccc
Q 031643 17 RVVVSPYRICPLGAHIDHQGGTVSAMTI-NKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASD 95 (156)
Q Consensus 17 ~~~~APGRv~L~GEH~d~~Gg~vla~Ai-~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 95 (156)
..++|||||+|+|||+|++|+.+++++| ++++++.+++++ +.+++... ..
T Consensus 6 ~~~~aP~ki~L~Ge~~~~~g~~~l~~ai~~~~~~v~v~~~~-~~~~i~~~-----------~~----------------- 56 (292)
T 2oi2_A 6 GVGQAHSKIILIGEHAVVYGYPAISLPLLEVEVTCKVVPAE-SPWRLYEE-----------DT----------------- 56 (292)
T ss_dssp EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEECS-SCCCCCCC-----------SH-----------------
T ss_pred EEEEeeeEEEEEeCCeeecCCcEEEEEEcCcEEEEEEEECC-CceEEEec-----------Cc-----------------
Confidence 5689999999999999999999999999 999999999863 22322110 00
Q ss_pred cchhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 96 SAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 96 ~~~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.+.+.-+...+ .+... .|+++.++++||+ |+|||||||..+|++.|+
T Consensus 57 ----------~~~~~~~~~~~--~~~~~-~g~~i~i~~~iP~-g~GLGSSsa~~~a~~~al 103 (292)
T 2oi2_A 57 ----------LSMAVYASLEY--LNITE-ACIRCEIDSAIPE-KRGMGSSAAISIAAIRAV 103 (292)
T ss_dssp ----------HHHHHHHHHHH--HTCSC-CCEEEEEC----C-CGGGSCHHHHHHHHHHHH
T ss_pred ----------cchhhhhhHHH--hcccC-CceEEEEEecCCC-CCCchHHHHHHHHHHHHH
Confidence 00011111222 14433 6899999999997 999999999999998764
No 16
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.67 E-value=1.4e-16 Score=127.61 Aligned_cols=103 Identities=14% Similarity=0.066 Sum_probs=80.4
Q ss_pred EEEcceeeee----cccccc-cCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcccccccccccc
Q 031643 18 VVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVH 92 (156)
Q Consensus 18 ~~~APGRv~L----~GEH~d-~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 92 (156)
.++||||||| +|||.| ||+..+++++|+++.++.+++++++.+++... . +.++
T Consensus 4 ~~~apaKinL~L~v~g~~~dGyh~l~sl~~ai~l~~~v~v~~~~~~~i~i~~~-~--------~~~~------------- 61 (283)
T 2ww4_A 4 QWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGDIRLLTP-V--------EGVE------------- 61 (283)
T ss_dssp EEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEESSSCEEECSC-B--------TTBC-------------
T ss_pred cccCceeEEeeeeccCCCCCCCcceEEEEEECCCCcEEEEEECCCCcEEEEeC-C--------CCCC-------------
Confidence 3689999999 799999 99999999999999999999887766666432 1 1111
Q ss_pred ccccchhccccchhhhHHHHHHHHHHc-------CCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 93 ASDSAKIKEECKWGNYARGALYALQSR-------GNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 93 ~~~~~~~~~~~~w~~y~~gv~~~l~~~-------g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
. ..+|+..++..+.+. |. . .|+++.++++||+ |+|||||||..+|++.|+
T Consensus 62 --------~---~~nlv~~a~~~~~~~~~~~~~~g~-~-~g~~i~i~~~IP~-g~GLGsSsa~~~a~l~al 118 (283)
T 2ww4_A 62 --------H---EDNLIVRAARLLMKTAADSGRLPT-G-SGANISIDKRLPM-GGGLGGGSSNAATVLVAL 118 (283)
T ss_dssp --------G---GGSHHHHHHHHHHHHHHHTTCSCT-T-CEEEEEEECCCC--CTTSCHHHHHHHHHHHHH
T ss_pred --------C---cccHHHHHHHHHHHHhhhhcccCC-C-CceEEEEEeCCCC-CCCccHHHHHHHHHHHHH
Confidence 0 146777777766543 54 2 6999999999997 999999999999998763
No 17
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.62 E-value=1.2e-15 Score=121.05 Aligned_cols=101 Identities=13% Similarity=0.013 Sum_probs=79.9
Q ss_pred eEEEEcceeeee----cccccc-cCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcccccccccc
Q 031643 16 VRVVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHV 90 (156)
Q Consensus 16 ~~~~~APGRv~L----~GEH~d-~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~ 90 (156)
++.++||||||| .|+|.| ||+..++.++|+++.++ +++ +..+++.. +.++
T Consensus 4 m~~~~aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v-~~~--~~~i~i~~-----------~~~~----------- 58 (271)
T 2v8p_A 4 MIKVLSPAKINLGLWVLGRLPSGYHEILTLYQEIPFYDEI-YIR--EGVLRVET-----------NIGI----------- 58 (271)
T ss_dssp CEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEE-EEE--ESSCEEEE-----------SSCC-----------
T ss_pred eEEEeecceEEeeEeecccCCCCCceEEEEEEEcCcccEE-EEe--CCeEEEEe-----------CCCC-----------
Confidence 356899999999 799999 99999999999999999 887 33455543 1111
Q ss_pred ccccccchhccccchhhhHHHHHHHHHHc-CCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 91 VHASDSAKIKEECKWGNYARGALYALQSR-GNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 91 ~~~~~~~~~~~~~~w~~y~~gv~~~l~~~-g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
..|.+|+..++..+.+. +.. .|+++.++++||+ |+|||||||..+|++.|+
T Consensus 59 ------------~~~~nlv~~a~~~~~~~~g~~--~g~~i~i~~~IP~-g~GLGsSsa~a~a~l~al 110 (271)
T 2v8p_A 59 ------------PQEENLVYKGLREFERITGIE--INYSIFIQKNIPP-GAGLGGGSSNLAVVLKKV 110 (271)
T ss_dssp ------------CTTTCHHHHHHHHHHHHHCCC--CCEEEEEECCSCT-TSSSCHHHHHHHHHHHHH
T ss_pred ------------CCCchHHHHHHHHHHHHhCCC--CCeEEEEEeCCCC-CCCCchHHHHHHHHHHHH
Confidence 13577787777777653 543 5899999999997 999999999999998764
No 18
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.54 E-value=3.2e-15 Score=120.89 Aligned_cols=113 Identities=14% Similarity=0.004 Sum_probs=81.2
Q ss_pred EEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcccccccccccccccc
Q 031643 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS 96 (156)
Q Consensus 17 ~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 96 (156)
..++||+||+|+|+|+||++|.++|....+.+.+. ....+.+++.++.+++ ..++.++..
T Consensus 9 ~~~~ap~~i~l~~~~g~~~~g~~lp~~dslg~al~-~l~~~~~v~~~~~~~~-~~~~~~~g~------------------ 68 (317)
T 2gs8_A 9 ITVTSYANIAIIKYWGKENQAKMIPSTSSISLTLE-NMFTTTSVSFLPDTAT-SDQFYINGI------------------ 68 (317)
T ss_dssp EEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE-EEEEEEEEEECCTTCC-SCEEEETTE------------------
T ss_pred EEEEecCcEEEEeeeeeccCCcccCCCCceEEEee-cccceEEEEEEcCCCC-eEEEEECCC------------------
Confidence 57999999999999999999999888888887774 2233222332122222 223444331
Q ss_pred chhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 97 AKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 97 ~~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.....|.+|++.++..+.+.+. .|+++.++++||+ |+|||||||..||++.|+
T Consensus 69 ---~~~~~~~n~v~~~~~~~~~~~~---~g~~I~i~~~IP~-~~GLGSSaA~~vA~~~al 121 (317)
T 2gs8_A 69 ---LQNDEEHTKISAIIDQFRQPGQ---AFVKMETQNNMPT-AAGLSSSSSGLSALVKAC 121 (317)
T ss_dssp ---ECCHHHHHHHHHHHTTTCCTTC---CCEEEEEECCSCG-GGCCCHHHHHHHHHHHHH
T ss_pred ---ccccchHHHHHHHHHHHHHhcC---CCeEEEEeCCCCC-CCchHHHHHHHHHHHHHH
Confidence 0123688899888887765432 4899999999997 999999999999988763
No 19
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.49 E-value=4.2e-14 Score=112.22 Aligned_cols=95 Identities=13% Similarity=-0.009 Sum_probs=73.3
Q ss_pred cceeeee----cccccc-cCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCccccccccccccccc
Q 031643 21 SPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASD 95 (156)
Q Consensus 21 APGRv~L----~GEH~d-~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 95 (156)
||||||| .|+|.| ||...++.++|+++.++.+++. .+++.... ++
T Consensus 5 aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v~~~~~---~~~i~~~~----------~~----------------- 54 (275)
T 1uek_A 5 APAKVNLGLSVRFRREDGYHELHTLFAPFSLADRLVVEPV---SSGLHFQG----------PY----------------- 54 (275)
T ss_dssp EEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEEEEE---SSCEEEES----------TT-----------------
T ss_pred ecCeEEEeeeecCcCCCCCceeeEEEEEcCCCCEEEEEEC---cEEEEEcC----------CC-----------------
Confidence 9999999 599999 8999999999999999999872 23332211 11
Q ss_pred cchhccccchhhhHHHHHHHHHHc-CCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 96 SAKIKEECKWGNYARGALYALQSR-GNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 96 ~~~~~~~~~w~~y~~gv~~~l~~~-g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
+ ..+++..++..+.+. +.. .|+++.++++||+ |+|||||||..+|++.|+
T Consensus 55 -----~---~~n~v~~a~~~~~~~~g~~--~g~~i~i~~~IP~-g~GLGSSsa~a~a~l~al 105 (275)
T 1uek_A 55 -----G---RENLAYRAASLYLEAAGQP--GGVRILLEKRIPE-GAGLGGGSSDAAQVLLAL 105 (275)
T ss_dssp -----G---GGSHHHHHHHHHHHHTTCC--CEEEEEEECCSCS-SSSSCHHHHHHHHHHHHH
T ss_pred -----C---CccHHHHHHHHHHHHhCCC--CCEEEEEecCCCC-cCcccHHHHHHHHHHHHH
Confidence 1 145666777766554 432 6899999999997 999999999999998764
No 20
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.49 E-value=2e-13 Score=108.80 Aligned_cols=101 Identities=22% Similarity=0.192 Sum_probs=75.6
Q ss_pred EEEEcceeeeecccccccCCCeEEEeeecc-ceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCccccccccccccccc
Q 031643 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINK-GILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASD 95 (156)
Q Consensus 17 ~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~-~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 95 (156)
+.++||+|++++|+|.| ++++++|. ++.+.+++++++.+++.... .++
T Consensus 3 i~v~aPaki~nlG~g~~-----vl~~a~d~~~~~~~~~~~~~~~~~i~~~~---------~~~----------------- 51 (296)
T 1h72_C 3 VRVKAPCTSANLGVGFD-----VFGLCLKEPYDVIEVEAIDDKEIIIEVDD---------KNI----------------- 51 (296)
T ss_dssp EEEEEEEEEECTGGGTT-----TEEEEEEEEEEEEEEEEESSSSEEEEESC---------TTS-----------------
T ss_pred EEEEEEeehhccccchh-----hhHHhcccccEEEEEEecCCCeEEEEEcC---------CcC-----------------
Confidence 46899999999999777 88999998 45566666655445554211 111
Q ss_pred cchhccccchhhhHHHHHHHHHHc-CCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 96 SAKIKEECKWGNYARGALYALQSR-GNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 96 ~~~~~~~~~w~~y~~gv~~~l~~~-g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
+...|.+|+..++..+.+. |.+ .|+++.++++||+ |+|||||||..+|++.|+
T Consensus 52 -----~~~~~~n~v~~a~~~~~~~~g~~--~g~~i~i~~~iP~-g~GLGSSsa~~~a~~~al 105 (296)
T 1h72_C 52 -----PTDPDKNVAGIVAKKMIDDFNIG--KGVKITIKKGVKA-GSGLGSSAASSAGTAYAI 105 (296)
T ss_dssp -----CCCTTTSHHHHHHHHHHHHTTCC--CEEEEEEECSSCT-TSSSCHHHHHHHHHHHHH
T ss_pred -----CCCCccCcHHHHHHHHHHHhCCC--CCeEEEEEcCCCC-CCCccHHHHHHHHHHHHH
Confidence 1223788888888887654 543 5899999999997 999999999999998764
No 21
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.47 E-value=7.9e-14 Score=114.17 Aligned_cols=113 Identities=12% Similarity=0.002 Sum_probs=84.4
Q ss_pred EEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcccccccccccccccc
Q 031643 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS 96 (156)
Q Consensus 17 ~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 96 (156)
..++||+||+|+|+|.+|+++.++|+...+++.+. .++.+.+++ .+.+++. .++.++.-.
T Consensus 10 ~~~~ap~nialiky~gk~~~~~~lP~~dslglal~-~~~~~~~v~-~~~~~~~-~~~~i~g~~----------------- 69 (332)
T 3qt5_A 10 GKARAHTNIALIKYWGKADETYIIPMNNSLSVTLD-RFYTETKVT-FDPDFTE-DCLILNGNE----------------- 69 (332)
T ss_dssp EEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE-EEEEEEEEE-EETTCSS-CEEEETTEE-----------------
T ss_pred EEEEecCcEEEEeeeeeccCCccccCCCceEEEec-CCCCeeEEE-EcCCCCc-cEEEECCcc-----------------
Confidence 36899999999999999999999999999999887 333433444 2344432 344544311
Q ss_pred chhccccchhhhHHHHHHHHHHc-CCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 97 AKIKEECKWGNYARGALYALQSR-GNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 97 ~~~~~~~~w~~y~~gv~~~l~~~-g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
...+|.+++..++..+.+. +.+ .|+++.++++||+ ++|||||||..+|++.|+
T Consensus 70 ----~~~~~~n~v~~~~~~~~~~~~~~--~~~~i~~~~~iP~-~~GLgSSaa~~~a~~~a~ 123 (332)
T 3qt5_A 70 ----VNAKEKEKIQNYMNIVRDLAGNR--LHARIESENYVPT-AAGLASSASAYAALAAAC 123 (332)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHTCC--CEEEEEEEEESCG-GGTCCCHHHHHHHHHHHH
T ss_pred ----CCcchHHHHHHHHHHHHHhcCCC--CCEEEEEecCCCC-CCCcchHHHHHHHHHHHH
Confidence 1234788888888877654 543 5899999999997 999999999999998763
No 22
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.25 E-value=5.9e-11 Score=95.99 Aligned_cols=106 Identities=13% Similarity=0.009 Sum_probs=78.0
Q ss_pred EEEEcceeeee----cccccc-cCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCccccccccccc
Q 031643 17 RVVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV 91 (156)
Q Consensus 17 ~~~~APGRv~L----~GEH~d-~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~ 91 (156)
+.++||+|||| .|.+.| ||.-..+-++|+++-.+.+++.++..+++..... +.++.
T Consensus 6 ~~~~apAKiNL~L~v~~~r~DGyh~l~s~~~al~l~D~l~~~~~~~~~i~~~g~~~--------~~~p~----------- 66 (306)
T 3pyf_A 6 VTVRVPGKVNLYLAVGDRREDGYHELTTVFHAVSLVDEVTVRNADVLSLELVGEGA--------DQLPT----------- 66 (306)
T ss_dssp EEEEEEEEEEEEEEECCCCTTSCCCEEEEEEEEEEEEEEEEEECSSCEEEEESTTG--------GGSCC-----------
T ss_pred EEEEecceEEeecccCCcCCCCCcchheeEEEcccCCEEEEEECCCCEEEEeCCCc--------cCCCC-----------
Confidence 56899999999 999999 8888889999999999999887655454432110 01110
Q ss_pred cccccchhccccchhhhHHHHHHHHHH-cCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 92 HASDSAKIKEECKWGNYARGALYALQS-RGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 92 ~~~~~~~~~~~~~w~~y~~gv~~~l~~-~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
+..|++..++..+.+ .|.. .|+++.++++||+ |+|||||||..+|++.|+
T Consensus 67 ------------~~~Nlv~~A~~~l~~~~g~~--~~~~i~i~~~iP~-~~GLGsssa~a~a~l~al 117 (306)
T 3pyf_A 67 ------------DERNLAWQAAELMAEHVGRA--PDVSIMIDKSIPV-AGGMAGGSADAAAVLVAM 117 (306)
T ss_dssp ------------STTSHHHHHHHHHHHHTTCC--CCEEEEEEECSCT-TSSSCHHHHHHHHHHHHH
T ss_pred ------------CCccHHHHHHHHHHHHhCCC--CCeEEEEecCCCC-CCCcchHHHHHHHHHHHH
Confidence 113455555555554 3543 5899999999997 999999999999988763
No 23
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=98.93 E-value=1.6e-09 Score=91.06 Aligned_cols=107 Identities=16% Similarity=0.097 Sum_probs=68.3
Q ss_pred EEEEcceeeeecccccccCCCeE------EEeeec---cceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCccccccc
Q 031643 17 RVVVSPYRICPLGAHIDHQGGTV------SAMTIN---KGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKK 87 (156)
Q Consensus 17 ~~~~APGRv~L~GEH~d~~Gg~v------la~Ai~---~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~ 87 (156)
..++||+||.|++.|.++..+.. +.++|+ +++.+.++..++ ++ ..++.++.-.
T Consensus 26 ~~~~Ap~nialik~~gkr~~~~~~P~~dslg~aL~~~~l~~~~~v~~~~~---------~~-~~~i~i~G~~-------- 87 (416)
T 1fi4_A 26 ASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPE---------FE-RDTLWLNGEP-------- 87 (416)
T ss_dssp EEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTT---------CC-SCBCTTTCCB--------
T ss_pred EEEEecceEEEEecccccCCceecccccceEEEEEcCCCcceEEEEEcCC---------CC-ccEEEECCcc--------
Confidence 45899999999999999988774 455555 555555554221 11 0111122100
Q ss_pred cccccccccchhccccchhhhHHHHHHHHHHc-CC------CC----CCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 88 HHVVHASDSAKIKEECKWGNYARGALYALQSR-GN------NL----TQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 88 ~~~~~~~~~~~~~~~~~w~~y~~gv~~~l~~~-g~------~~----~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.+. . .++++.++..+.+. +. .+ ..|++|.++++||. ++|||||||..+|++.|+
T Consensus 88 ------------~~~-~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~I~i~~~IP~-~aGLGSSAA~aaA~l~Al 152 (416)
T 1fi4_A 88 ------------HSI-D-NERTQNCLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPT-AAGLASSAAGFAALVSAI 152 (416)
T ss_dssp ------------SSS-S-SSSHHHHHHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCT-TSCCCHHHHHHHHHHHHH
T ss_pred ------------ccc-c-chHHHHHHHHHHHHhccccccccccccccCCcEEEEEecCCcC-cCCccHHHHHHHHHHHHH
Confidence 001 1 34566776666543 21 00 15899999999997 999999999999988763
No 24
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=98.62 E-value=1.5e-07 Score=75.64 Aligned_cols=98 Identities=17% Similarity=0.096 Sum_probs=65.5
Q ss_pred EEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCCcccccccccccccccc
Q 031643 17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS 96 (156)
Q Consensus 17 ~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 96 (156)
+.+++|++.--+|. |..+|-+||+++.++.+++.++ .+++.... . +.++.
T Consensus 3 ~~v~vPat~anlG~-----Gfd~lg~al~l~d~v~~~~~~~-~~~i~~~~-~-------~~~p~---------------- 52 (298)
T 3hul_A 3 LRIRVPATTANLGP-----GFDSCGLALTLYLTLDIGAEAD-SWYIEHNI-G-------GGIPH---------------- 52 (298)
T ss_dssp EEEEEEEEEESCTT-----CTTTEEEEEEEEEEEEEEEECS-SCEEECCC-C-------TTCCS----------------
T ss_pred EEEEEeeceeccCC-----CcchhhhhcccceEEEEEEcCC-ceEEEecC-c-------ccCCC----------------
Confidence 46899999888887 6667889999999999975433 35554221 0 11110
Q ss_pred chhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 97 AKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 97 ~~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.+. +.+.-++..+.+ .. .|+++.++++||+ |+|||||||..+|++.|+
T Consensus 53 ----~~~---nlv~~a~~~~~~---~~-~g~~i~i~~~iP~-~~GLGsssa~~~a~~~al 100 (298)
T 3hul_A 53 ----DET---NVIIETALNLAP---NL-TPHHLVMTCDIPP-ARGLGSSSAAVVAGIELA 100 (298)
T ss_dssp ----STT---SHHHHHHHHHCT---TC-CCEEEEEEECSCT-TSSSSHHHHHHHHHHHHH
T ss_pred ----CCC---cHHHHHHHHHhc---cC-CceEEEEecCCCC-CCCccHHHHHHHHHHHHH
Confidence 111 112222223322 22 6899999999997 999999999999998764
No 25
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=98.11 E-value=2.7e-05 Score=64.40 Aligned_cols=89 Identities=15% Similarity=0.078 Sum_probs=58.5
Q ss_pred CCCeEEEeeec---cceEEEEEEcCC-CeEEEEeCCCCCeeEEecCCCCCccccccccccccccccchhccccchhhhHH
Q 031643 35 QGGTVSAMTIN---KGILLGFVPSGD-TEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYAR 110 (156)
Q Consensus 35 ~Gg~vla~Ai~---~~~~v~~~~~~d-~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~ 110 (156)
.+--.|.+||+ +++.+.++..++ ...++.. +++ . .+. . -.+.+.
T Consensus 32 P~~dslglaL~~~~l~~~~~v~~~~~~~~~~i~i---~g~-~--~~~-----------------------~---~~~~v~ 79 (380)
T 2hke_A 32 PTNDSFSITLSASPFRSKTSVELRDDIETDTLRL---NGT-E--VDV-----------------------G---KTPRVQ 79 (380)
T ss_dssp BSSCEEEEEBCSSSCCEEEEEEEESSCSSCEEEE---TTE-E--ECG-----------------------G---GCHHHH
T ss_pred CCCCceEEEecCCCCceEEEEEECCCCCccEEEE---CCc-c--cCc-----------------------h---hHHHHH
Confidence 67778999999 999999887542 1223321 111 0 000 0 123455
Q ss_pred HHHHHHHHc-CCC-CCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 111 GALYALQSR-GNN-LTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 111 gv~~~l~~~-g~~-~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.++..+.+. +.. .+.|++|.++++||. ++|||||||..||++.|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~v~I~~~~~IP~-aaGLGSSAA~aaA~l~Al 126 (380)
T 2hke_A 80 SMLLHLRSTCPEELKNKKVNIVSENNFPT-AAGMASSASGYCAMSAAL 126 (380)
T ss_dssp HHHHHHHTSSCHHHHTCEEEEEEEECSCT-TSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCCEEEEEeccCCC-ccCcchHHHHHHHHHHHH
Confidence 666666654 320 025899999999997 999999999999988763
No 26
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=97.47 E-value=0.00013 Score=59.36 Aligned_cols=28 Identities=29% Similarity=0.218 Sum_probs=26.4
Q ss_pred CCEEEEEEeccCCCCCCcchHHHHHHHhh
Q 031643 125 QGIIGYICGSDNLDSSGLSSSAAVSMSFP 153 (156)
Q Consensus 125 ~g~~i~i~s~iP~~gaGLgSSAA~~Va~~ 153 (156)
.|++|.++++||. ++|||||||..||++
T Consensus 91 ~gv~I~~~n~IP~-aaGLgSSAA~~aA~~ 118 (323)
T 3lto_A 91 GGFLIQSSNNFPH-SSGLASSASSFAALT 118 (323)
T ss_dssp CCEEEEEEESSCT-TTTCCCHHHHHHHHH
T ss_pred CCEEEEEEeCCCC-ccCcchhHHHHHHHH
Confidence 5899999999997 999999999999988
No 27
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=97.46 E-value=0.00033 Score=58.77 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=28.2
Q ss_pred CCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643 125 QGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156 (156)
Q Consensus 125 ~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al 156 (156)
.|++|.+.+++|+ ++|||||||..+|++.|+
T Consensus 122 ~~~~I~~~~~iP~-aaGLgSSaA~~aA~~~a~ 152 (414)
T 3f0n_A 122 YKVHVASVNNFPT-AAGLASSAAGYACLAYTL 152 (414)
T ss_dssp SCEEEEEEECCCG-GGCCCHHHHHHHHHHHHH
T ss_pred CcEEEEEEeCCCC-CcCcchhHHHHHHHHHHH
Confidence 4899999999997 999999999999998763
Done!