RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 031643
(156 letters)
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA;
2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Length = 419
Score = 105 bits (263), Expect = 1e-27
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 23/154 (14%)
Query: 1 MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
+ K +E+ G EV SP RI +G H D+ GG V +I G D +V
Sbjct: 34 LTEKFAEVFGDTKEV-EYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKV 92
Query: 61 VLRSGQFD--GEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQS 118
L S F G + F +DE+++ + W NY +G + L+
Sbjct: 93 KLYSENFPKLGVIEFDLDEVEKK-------------------DGELWSNYVKGMIVMLKG 133
Query: 119 RGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSF 152
G + +G I + +SGLSSSA++ +
Sbjct: 134 AGYEIDKGFELLIK-GEIPTASGLSSSASLELLV 166
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national
project protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A*
1s4e_A*
Length = 350
Score = 101 bits (255), Expect = 7e-27
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 25/135 (18%)
Query: 18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDE 77
V SP R+ +G H D+ G V M IN + EV+L S F E +FS+++
Sbjct: 3 KVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKI--EAEKHGEVILYSEHFGEERKFSLND 60
Query: 78 IQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNL 137
+++E W +Y +G + L+ + GI G + +
Sbjct: 61 ---------------------LRKENSWIDYVKGIFWVLKESDYEVG-GIKGRVS-GNLP 97
Query: 138 DSSGLSSSAAVSMSF 152
+GLSSSA+ +
Sbjct: 98 LGAGLSSSASFEVGI 112
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET:
GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Length = 399
Score = 91.7 bits (228), Expect = 7e-23
Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 24/141 (17%)
Query: 16 VRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGE----V 71
V +P R+ +G H D+ G V M + +L P D V L + + +
Sbjct: 36 ELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRL 95
Query: 72 RFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYI 131
+F + Q+ +W NY +G + + G +
Sbjct: 96 QFPLPTAQRSLE----------------PGTPRWANYVKGVIQYYPAAP---LPGFSAVV 136
Query: 132 CGSDNLDSSGLSSSAAVSMSF 152
S GLSSSA++ ++
Sbjct: 137 V-SSVPLGGGLSSSASLEVAT 156
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription
regulation, transcription; HET: GLA ATP; 2.10A
{Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Length = 520
Score = 65.6 bits (159), Expect = 2e-13
Identities = 23/161 (14%), Positives = 50/161 (31%), Gaps = 23/161 (14%)
Query: 1 MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
+ + + + + SP R+ +G HID+ +V + I+ +L +
Sbjct: 26 VVDAFFQTYHVKPDFI--ARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNP 83
Query: 61 VLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
+ D + ++ + + V +W NY + L+ S
Sbjct: 84 SITLTNADPKFAQRKFDLPLDGSYMAIDPSVS-----------EWSNYFKCGLHVAHSYL 132
Query: 121 NNL---------TQGIIGYICGSDNLDSSGLSSSAAVSMSF 152
+ G + D GLSS+ + +
Sbjct: 133 KKIAPERFNNTPLVGAQIFCQS-DIPTGGGLSSAFTCAAAL 172
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET:
NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Length = 478
Score = 65.3 bits (159), Expect = 2e-13
Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 25/146 (17%)
Query: 10 GRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG 69
G + V +P R+ +G HID+ G +V M + + +L+ P + L +
Sbjct: 51 GSIPKFY--VRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLANTNPLY 108
Query: 70 -EVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSR-GNNLTQGI 127
+ S + IQ K + W NY L +Q G + G+
Sbjct: 109 PDFSTSANNIQID------------------KTKPLWHNYFLCGLKGIQEHFGLSNLTGM 150
Query: 128 IGYICGSDNL-DSSGLSSSAAVSMSF 152
+ G N+ SSGLSSS+A+
Sbjct: 151 NCLVDG--NIPPSSGLSSSSALVCCA 174
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Length = 317
Score = 57.3 bits (139), Expect = 1e-10
Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 19/136 (13%)
Query: 18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDE 77
++ +P ++ G H G +M I+ + + + E++L + + +++E
Sbjct: 7 IIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNE 66
Query: 78 IQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNL 137
I+ + + L G I +
Sbjct: 67 IK----------------NINPNNFGDFKYCLCAIKNTLDYLNIEPKTGFKINISS--KI 108
Query: 138 D-SSGLSSSAAVSMSF 152
S GL SSA++++
Sbjct: 109 PISCGLGSSASITIGT 124
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 48.0 bits (114), Expect = 2e-07
Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 28/138 (20%)
Query: 21 SPYRICPLGAHIDHQ------GGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFS 74
+P R+ G D GG + TIN + + + + +D + S
Sbjct: 8 APLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEINA--YDAQCCKS 65
Query: 75 IDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGS 134
+ Q E + +G + + +
Sbjct: 66 YLSMSQL-------------------EIDGEASLIKGVYNRIIRDYRLEPKSFKITTY-N 105
Query: 135 DNLDSSGLSSSAAVSMSF 152
D SGL +S+ + +
Sbjct: 106 DAPAGSGLGTSSTMVVCI 123
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
{Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
2r42_A* 2r3v_A
Length = 395
Score = 44.5 bits (104), Expect = 4e-06
Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 14/148 (9%)
Query: 18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDE 77
+V +P ++ G H G A+ +N L P + +V L + + +
Sbjct: 7 LVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVAT 66
Query: 78 IQQPRNSVKKHHVVHASDSAKIKE--------ECKWGNYARGA-----LYALQSRGNNLT 124
+Q + V A ++++ GN LY R
Sbjct: 67 LQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTL 126
Query: 125 QGIIGYICGSDNLDSSGLSSSAAVSMSF 152
+ + S+ +GL SSAA S+
Sbjct: 127 PSLDIMV-WSELPPGAGLGSSAAYSVCV 153
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus
aureus}
Length = 308
Score = 42.0 bits (99), Expect = 2e-05
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 33/136 (24%)
Query: 18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDE 77
S +I +G H G A+ N G +V++ + + D
Sbjct: 8 YGESTGKIILIGEHAVTFGEPAIAVPFNA---------GKIKVLIEALESGNYSSIKSDV 58
Query: 78 IQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNL 137
++ + + N+T+ + I NL
Sbjct: 59 YDGMLYD--------------------APDHLKSLVNRFVELN-NITEPLAVTIQT--NL 95
Query: 138 D-SSGLSSSAAVSMSF 152
S GL SSAAV+++F
Sbjct: 96 PPSRGLGSSAAVAVAF 111
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 1e-04
Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 46/164 (28%)
Query: 12 DAEVVRVVVSP------YRICPLGAHIDHQGGTV-----SAMTINKGILLGFV------P 54
E+ +++S R+ + Q V + IN L+ + P
Sbjct: 48 KEEIDHIIMSKDAVSGTLRL--FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 55 SGDTE--VVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGA 112
S T + R ++ F+ K++V K+++ A
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFA------------KYNVSRLQPYLKLRQ----------A 143
Query: 113 LYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI 156
L L+ N L G++G G + S V F I
Sbjct: 144 LLELRPAKNVLIDGVLG--SGKTWVALDVCLSY-KVQCKMDFKI 184
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 34.3 bits (79), Expect = 0.010
Identities = 22/137 (16%), Positives = 38/137 (27%), Gaps = 31/137 (22%)
Query: 18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDE 77
+ ++ G H G I++ TE L
Sbjct: 15 KNIGYGKVILFGEHFVVHGAEAIVAGISEY----------TECRLE-------------- 50
Query: 78 IQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLT-QGIIGYICGSDN 136
V V + K + L +L+ G+ +I G
Sbjct: 51 ---INPGVPGLQVDDQRPAIPGYIAQKRDEQIKAHQLVLDHLKVDLSGDGLKMFIGG--P 105
Query: 137 LD-SSGLSSSAAVSMSF 152
L SSG+ +SA+ ++F
Sbjct: 106 LVPSSGIGASASDVVAF 122
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC,
structural genomics, NEW YORK SGX research center for
structural genomics; HET: PGE; 2.10A {Listeria innocua}
Length = 365
Score = 33.1 bits (75), Expect = 0.025
Identities = 23/135 (17%), Positives = 40/135 (29%), Gaps = 18/135 (13%)
Query: 17 RVVVS-PYRICPLGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFS 74
++ V P ++ G + G T +N+ I L S E+ + ++ V +
Sbjct: 6 KLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNELWIP--HYENPVSWP 63
Query: 75 IDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGS 134
I +P N A L + + I +
Sbjct: 64 IGGELKPDGEHWTFTAEAI-------------NIATTFLKSEGIELTPVKMVIETELIDQ 110
Query: 135 DNLDSSGLSSSAAVS 149
GL SSAA +
Sbjct: 111 SGA-KYGLGSSAAAT 124
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.072
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 18/42 (42%)
Query: 77 EIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQS 118
+++ + S+K ++A DSA AL A+++
Sbjct: 21 ALKKLQASLK----LYADDSAP-------------AL-AIKA 44
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6;
2.50A {Streptococcus pneumoniae}
Length = 292
Score = 29.3 bits (66), Expect = 0.46
Identities = 21/138 (15%), Positives = 38/138 (27%), Gaps = 44/138 (31%)
Query: 16 VRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSI 75
V V + +I +G H G ++ + + EV + + R
Sbjct: 5 VGVGQAHSKIILIGEHAVVYGYPAISLPLL-----------EVEVTCKVVPAESPWRLYE 53
Query: 76 DEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSD 135
+ + A+YA N I I
Sbjct: 54 E------------------------------DTLSMAVYASLEYLNITEACIRCEIDS-- 81
Query: 136 NLD-SSGLSSSAAVSMSF 152
+ G+ SSAA+S++
Sbjct: 82 AIPEKRGMGSSAAISIAA 99
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate
complex, periplasm, transesterification, phenol,
bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Length = 571
Score = 26.6 bits (57), Expect = 5.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 18 VVVSPYRICPLGAHIDHQGGTVSAMTI 44
V+V PY PL A +D +S + +
Sbjct: 15 VIVDPYGNAPLTALVDLDSHVISDVKV 41
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic
nucleotide binding domain, C-linker, CAM SPHCN1, HCN;
HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Length = 198
Score = 26.1 bits (58), Expect = 5.2
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 23 YRICPLGAHIDHQGGTVSAMT-INKGILLGFVPSGDTEVVLRSGQFDGEV 71
+ + ++ +G M I +GI+ + G L G + GE+
Sbjct: 96 FEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEI 145
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.388
Gapped
Lambda K H
0.267 0.0502 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,336,226
Number of extensions: 131158
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 18
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)