RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 031643
         (156 letters)



>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis
           [TaxId: 1358]}
          Length = 205

 Score = 63.7 bits (154), Expect = 9e-14
 Identities = 39/152 (25%), Positives = 60/152 (39%), Gaps = 19/152 (12%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           +  K +E+ G   EV     SP RI  +G H D+ GG V   +I  G         D +V
Sbjct: 6   LTEKFAEVFGDTKEV-EYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKV 64

Query: 61  VLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
            L S  F                  K   +    D  + K+   W NY +G +  L+  G
Sbjct: 65  KLYSENFP-----------------KLGVIEFDLDEVEKKDGELWSNYVKGMIVMLKGAG 107

Query: 121 NNLTQGIIGYICGSDNLDSSGLSSSAAVSMSF 152
             + +G    +   +   +SGLSSSA++ +  
Sbjct: 108 YEIDKGFE-LLIKGEIPTASGLSSSASLELLV 138


>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 225

 Score = 61.8 bits (149), Expect = 5e-13
 Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 14/150 (9%)

Query: 16  VRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSI 75
           V +V +P ++   G H    G    A+ +N    L   P  + +V L       +  + +
Sbjct: 5   VLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDV 64

Query: 76  DEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARG-------------ALYALQSRGNN 122
             +Q       +   V A    ++++  K     R               LY    R   
Sbjct: 65  ATLQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQR 124

Query: 123 LTQGIIGYICGSDNLDSSGLSSSAAVSMSF 152
               +   +  S+    +GL SSAA S+  
Sbjct: 125 TLPSLDIMV-WSELPPGAGLGSSAAYSVCV 153


>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 215

 Score = 54.5 bits (130), Expect = 2e-10
 Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 18/151 (11%)

Query: 2   RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVV 61
           R    E  G + E+   V +P R+  +G H D+  G V  M +    +L   P  D  V 
Sbjct: 16  RRAFREEFGAEPELA--VSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVS 73

Query: 62  LRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGN 121
           L +     +    +               +  +  +      +W NY +G +    +   
Sbjct: 74  LLTTSEGADEPQRL------------QFPLPTAQRSLEPGTPRWANYVKGVIQYYPAAPL 121

Query: 122 NLTQGIIGYICGSDNLDSSGLSSSAAVSMSF 152
                    +  S      GLSSSA++ ++ 
Sbjct: 122 PG----FSAVVVSSVPLGGGLSSSASLEVAT 148


>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 180

 Score = 49.1 bits (116), Expect = 1e-08
 Identities = 20/134 (14%), Positives = 44/134 (32%), Gaps = 17/134 (12%)

Query: 18  VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDE 77
           ++ +P ++   G H    G    +M I+    +    + + E++L     +  +  +++E
Sbjct: 7   IIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNE 66

Query: 78  IQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNL 137
           I+                            Y   A+       N   +        S   
Sbjct: 67  IKN-----------------INPNNFGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIP 109

Query: 138 DSSGLSSSAAVSMS 151
            S GL SSA++++ 
Sbjct: 110 ISCGLGSSASITIG 123


>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 176

 Score = 46.4 bits (109), Expect = 2e-07
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 19  VVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEI 78
           V SP R+  +G H D+  G V  M I+   ++        +V L S  F+ E  F++D +
Sbjct: 2   VKSPGRVNLIGEHTDYTYGYVMPMAIDLYTIITAEK--YDKVQLYSEHFNEEKTFTLDNL 59

Query: 79  QQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYA 115
            +  + +     V      +  +         G L  
Sbjct: 60  TKEGSWIDYVKGVLWVLIQEGYKIGGLKGKITGDLPL 96


>d2igsa1 d.2.1.11 (A:4-215) Hypothetical protein PA2222 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 212

 Score = 24.2 bits (52), Expect = 7.8
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 30  AHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHH 89
           +  D Q  T+ A  I  G+ +GF    + E V      + E+   +  + Q  + +K   
Sbjct: 54  SKADQQYSTLLAQEIANGVTIGFRMVNEKERVC-----NVEILPLLTSMAQNLDRIKARF 108


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 551,749
Number of extensions: 23582
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 9
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.1 bits)