BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031648
         (155 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A1U371|ISPE_MARAV 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Marinobacter
           aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ispE
           PE=3 SV=1
          Length = 287

 Score = 32.3 bits (72), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 16/77 (20%)

Query: 83  SILNDGRIWK------ERVSAGMRRRADLPVMKEGGALESEAVGTKPPPNRPNRLILPSL 136
           ++L   R+W+      +    G+R  AD+PV   G A   E VG K  P  P        
Sbjct: 112 TLLAMNRLWELNLCEDQLAEIGLRLGADVPVFVRGHAAFGEGVGEKLTPTNP-------- 163

Query: 137 SAPEHNLLKLLEECNAS 153
             PE   + L  ECN S
Sbjct: 164 --PEDWFVVLKPECNIS 178


>sp|P98069|BMPH_STRPU Bone morphogenetic protein 1 homolog OS=Strongylocentrotus
           purpuratus PE=2 SV=1
          Length = 639

 Score = 31.6 bits (70), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 79  LPEPSILNDGRIWKERVSAGMRRRADLPVMKE---GGALESEAVGTKPPPNRPN 129
           LP+P + +D R+W E  S+  R         E   GG +E E+ GT   PN P+
Sbjct: 386 LPDPILSSDSRLWIELKSSAHRYSRGFAANYEAICGGHIERES-GTLQSPNYPD 438


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.134    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,961,195
Number of Sequences: 539616
Number of extensions: 2684686
Number of successful extensions: 6272
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 6253
Number of HSP's gapped (non-prelim): 49
length of query: 155
length of database: 191,569,459
effective HSP length: 107
effective length of query: 48
effective length of database: 133,830,547
effective search space: 6423866256
effective search space used: 6423866256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)