Query 031648
Match_columns 155
No_of_seqs 33 out of 35
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 03:28:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03109 ETHYLENE-INSENSITIVE3 49.2 4.4 9.4E-05 39.1 -0.7 14 141-154 94-107 (599)
2 PRK13730 conjugal transfer pil 37.5 25 0.00054 30.2 2.1 25 130-154 92-116 (212)
3 PF10736 DUF2527: Protein of u 27.8 21 0.00046 23.4 0.1 8 1-8 1-8 (38)
4 PF06972 DUF1296: Protein of u 24.7 52 0.0011 23.4 1.6 16 138-153 19-34 (60)
5 PF12714 TILa: TILa domain 23.0 41 0.00089 22.3 0.8 17 73-89 36-52 (56)
6 PF07629 DUF1590: Protein of u 21.4 42 0.00092 21.2 0.6 10 75-84 5-14 (32)
7 PF01308 Chlam_OMP: Chlamydia 20.2 38 0.00082 31.4 0.3 13 80-92 29-41 (389)
8 PF02861 Clp_N: Clp amino term 18.1 82 0.0018 19.0 1.4 14 137-150 13-26 (53)
9 PRK13867 type IV secretion sys 11.7 1E+02 0.0022 22.2 0.6 11 74-84 51-61 (65)
10 PLN02608 L-ascorbate peroxidas 9.6 1.7E+02 0.0037 25.8 1.4 35 86-120 223-259 (289)
No 1
>PLN03109 ETHYLENE-INSENSITIVE3-like3 protein; Provisional
Probab=49.17 E-value=4.4 Score=39.09 Aligned_cols=14 Identities=50% Similarity=0.923 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhccC
Q 031648 141 HNLLKLLEECNASG 154 (155)
Q Consensus 141 h~ll~lleec~~~~ 154 (155)
+-.|||.|-||+-|
T Consensus 94 kymlk~me~c~a~g 107 (599)
T PLN03109 94 KYMLKLMEVCKARG 107 (599)
T ss_pred HHHHHHHHHHhhcc
Confidence 56799999999865
No 2
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=37.53 E-value=25 Score=30.20 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=22.5
Q ss_pred cccccccCcchHHHHHHHHHhhccC
Q 031648 130 RLILPSLSAPEHNLLKLLEECNASG 154 (155)
Q Consensus 130 r~iLpS~SAPEh~ll~lleec~~~~ 154 (155)
=.+|.|||=||-.|..||.|+...|
T Consensus 92 ~~vFVSfSMP~~sLk~Ll~qa~~~G 116 (212)
T PRK13730 92 ALYFVSFSIPEEGLKRMLGETRHYG 116 (212)
T ss_pred eEEEEEcCCCHHHHHHHHHHHHHhC
Confidence 6788999999999999999998755
No 3
>PF10736 DUF2527: Protein of unknown function (DUF2627) ; InterPro: IPR019672 This entry represents small proteins with unknown function and appear to be restricted to a family of Enterobacterial proteins. It has a highly conserved sequence. Some proteins are annotated as YobF and may be involved in stress responses in E. coli.
Probab=27.84 E-value=21 Score=23.35 Aligned_cols=8 Identities=63% Similarity=0.862 Sum_probs=6.1
Q ss_pred Cccceeee
Q 031648 1 MVGIFSRF 8 (155)
Q Consensus 1 MVGiFsrf 8 (155)
|-|||||=
T Consensus 1 M~GIFSKE 8 (38)
T PF10736_consen 1 MNGIFSKE 8 (38)
T ss_pred CcccccHh
Confidence 78899863
No 4
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=24.70 E-value=52 Score=23.37 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=13.9
Q ss_pred cchHHHHHHHHHhhcc
Q 031648 138 APEHNLLKLLEECNAS 153 (155)
Q Consensus 138 APEh~ll~lleec~~~ 153 (155)
.+|-.|.+||-|||..
T Consensus 19 hse~eIya~L~ecnMD 34 (60)
T PF06972_consen 19 HSEEEIYAMLKECNMD 34 (60)
T ss_pred CCHHHHHHHHHHhCCC
Confidence 4799999999999973
No 5
>PF12714 TILa: TILa domain
Probab=23.00 E-value=41 Score=22.32 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=15.2
Q ss_pred CCcCCCCCCCcccccch
Q 031648 73 LPIQCPLPEPSILNDGR 89 (155)
Q Consensus 73 ~Pv~CP~Pe~sI~~DG~ 89 (155)
+|.+|++-|-+.++||.
T Consensus 36 ~~~~C~~~e~C~~~~G~ 52 (56)
T PF12714_consen 36 QPSSCPPGEVCQIQNGV 52 (56)
T ss_pred eCCCCCCCCEeEeCCCE
Confidence 57899999999999985
No 6
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=21.44 E-value=42 Score=21.17 Aligned_cols=10 Identities=50% Similarity=1.016 Sum_probs=7.9
Q ss_pred cCCCCCCCcc
Q 031648 75 IQCPLPEPSI 84 (155)
Q Consensus 75 v~CP~Pe~sI 84 (155)
..||+||-|+
T Consensus 5 a~~pppeisl 14 (32)
T PF07629_consen 5 ADCPPPEISL 14 (32)
T ss_pred CCCCCCccee
Confidence 4699999774
No 7
>PF01308 Chlam_OMP: Chlamydia major outer membrane protein; InterPro: IPR000604 The major outer membrane protein of Chlamydia contains four symmetrically spaced variable domains (VDs I to IV). This protein maintains the structural rigidity of the outer membrane and facilitates porin formation, permitting diffusion of solutes through the intracellular reticulate body membrane. It is believed to play a role in pathogenesis and possibly adhesion. Along with the lipopolysaccharide, the major out membrane protein (MOMP) makes up the surface of the elementary body cell. Disulphide bond interactions within and between MOMP molecules and other components form high molecular weight oligomers. The MOMP is the protein used to determine the different serotypes.; GO: 0005198 structural molecule activity, 0015288 porin activity, 0009279 cell outer membrane
Probab=20.22 E-value=38 Score=31.40 Aligned_cols=13 Identities=46% Similarity=1.117 Sum_probs=11.3
Q ss_pred CCCcccccchhHH
Q 031648 80 PEPSILNDGRIWK 92 (155)
Q Consensus 80 Pe~sI~~DG~iw~ 92 (155)
-|||++.||.+||
T Consensus 29 AePsl~IdGi~wE 41 (389)
T PF01308_consen 29 AEPSLMIDGILWE 41 (389)
T ss_pred CCcccccCCcccc
Confidence 4678999999998
No 8
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=18.11 E-value=82 Score=19.00 Aligned_cols=14 Identities=57% Similarity=0.769 Sum_probs=10.9
Q ss_pred CcchHHHHHHHHHh
Q 031648 137 SAPEHNLLKLLEEC 150 (155)
Q Consensus 137 SAPEh~ll~lleec 150 (155)
-.|||-|+.||++-
T Consensus 13 i~~eHlL~all~~~ 26 (53)
T PF02861_consen 13 ISPEHLLLALLEDP 26 (53)
T ss_dssp E-HHHHHHHHHHHT
T ss_pred ccHHHHHHHHHhhh
Confidence 46899999999864
No 9
>PRK13867 type IV secretion system chaperone VirE1; Provisional
Probab=11.73 E-value=1e+02 Score=22.21 Aligned_cols=11 Identities=45% Similarity=1.204 Sum_probs=8.2
Q ss_pred CcCCCCCCCcc
Q 031648 74 PIQCPLPEPSI 84 (155)
Q Consensus 74 Pv~CP~Pe~sI 84 (155)
-.+||+||-..
T Consensus 51 vl~cplpednl 61 (65)
T PRK13867 51 VLRCPLPEDNL 61 (65)
T ss_pred hhcCCCCcccc
Confidence 46999998653
No 10
>PLN02608 L-ascorbate peroxidase
Probab=9.59 E-value=1.7e+02 Score=25.78 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=28.3
Q ss_pred ccchhHHHHHHhhhhcccCccce--ecCCceeecccC
Q 031648 86 NDGRIWKERVSAGMRRRADLPVM--KEGGALESEAVG 120 (155)
Q Consensus 86 ~DG~iw~er~s~S~Rrr~dl~v~--keg~~~~~~~~~ 120 (155)
+|...|.+.+++++-|..++.+. .+|++++++++.
T Consensus 223 ~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~~~ 259 (289)
T PLN02608 223 KDEDAFFRDYAESHKKLSELGFTPPSSAFKKKSTSTS 259 (289)
T ss_pred hCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCcch
Confidence 35667999999999999988855 788888888664
Done!