Query 031648
Match_columns 155
No_of_seqs 33 out of 35
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 04:55:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2emg_A Zinc finger protein 484 19.3 47 0.0016 17.9 1.3 10 71-80 37-46 (46)
2 3btp_B Protein VIRE1; TIM barr 17.3 41 0.0014 23.0 0.9 9 75-83 52-60 (63)
3 2ytp_A Zinc finger protein 484 16.2 57 0.002 17.6 1.2 10 71-80 37-46 (46)
4 2emi_A Zinc finger protein 484 15.2 65 0.0022 17.2 1.2 10 71-80 37-46 (46)
5 2en9_A Zinc finger protein 28 15.1 63 0.0022 17.4 1.2 8 72-79 38-45 (46)
6 3fes_A ATP-dependent CLP endop 13.3 74 0.0025 22.3 1.4 13 137-149 31-43 (145)
7 2eor_A Zinc finger protein 224 13.2 76 0.0026 16.9 1.1 8 72-79 38-45 (46)
8 1ijd_A Light-harvesting protei 12.9 56 0.0019 21.8 0.6 8 85-92 1-8 (53)
9 1nkz_A Light-harvesting protei 12.7 53 0.0018 21.9 0.4 7 85-91 1-7 (53)
10 2em4_A Zinc finger protein 28 12.3 85 0.0029 16.8 1.2 8 72-79 38-45 (46)
No 1
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=19.35 E-value=47 Score=17.85 Aligned_cols=10 Identities=10% Similarity=-0.021 Sum_probs=7.0
Q ss_pred CCCCcCCCCC
Q 031648 71 NDLPIQCPLP 80 (155)
Q Consensus 71 ~D~Pv~CP~P 80 (155)
.++|++|+.+
T Consensus 37 ~~~~~~C~~~ 46 (46)
T 2emg_A 37 GERPSGPSSG 46 (46)
T ss_dssp CCCCSCSCCC
T ss_pred CCCCCCCCCC
Confidence 3578888764
No 2
>3btp_B Protein VIRE1; TIM barrel, unique topology, novel fold, structural genomics structural proteomics center, ISPC, crown GALL tumor; 2.30A {Agrobacterium tumefaciens str}
Probab=17.29 E-value=41 Score=23.05 Aligned_cols=9 Identities=56% Similarity=1.431 Sum_probs=6.1
Q ss_pred cCCCCCCCc
Q 031648 75 IQCPLPEPS 83 (155)
Q Consensus 75 v~CP~Pe~s 83 (155)
.+||+||-.
T Consensus 52 l~CPLPE~N 60 (63)
T 3btp_B 52 LHCPLPEEN 60 (63)
T ss_dssp HTCCCCC--
T ss_pred hcCCCchhh
Confidence 589999854
No 3
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=16.24 E-value=57 Score=17.56 Aligned_cols=10 Identities=10% Similarity=-0.017 Sum_probs=6.9
Q ss_pred CCCCcCCCCC
Q 031648 71 NDLPIQCPLP 80 (155)
Q Consensus 71 ~D~Pv~CP~P 80 (155)
.++|++|+.+
T Consensus 37 ~~k~~~C~~~ 46 (46)
T 2ytp_A 37 GEKPSGPSSG 46 (46)
T ss_dssp CCCCCSSCCC
T ss_pred CCCCCCCCCC
Confidence 3578888753
No 4
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=15.23 E-value=65 Score=17.25 Aligned_cols=10 Identities=10% Similarity=-0.017 Sum_probs=6.7
Q ss_pred CCCCcCCCCC
Q 031648 71 NDLPIQCPLP 80 (155)
Q Consensus 71 ~D~Pv~CP~P 80 (155)
.++|++|+.+
T Consensus 37 ~~k~~~C~~~ 46 (46)
T 2emi_A 37 GEKPSGPSSG 46 (46)
T ss_dssp SCCCCSCCCC
T ss_pred CCCCCCCCCC
Confidence 3578888753
No 5
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=15.11 E-value=63 Score=17.36 Aligned_cols=8 Identities=13% Similarity=0.027 Sum_probs=5.6
Q ss_pred CCCcCCCC
Q 031648 72 DLPIQCPL 79 (155)
Q Consensus 72 D~Pv~CP~ 79 (155)
++|++|+.
T Consensus 38 ~k~~~C~~ 45 (46)
T 2en9_A 38 EKPSGPSS 45 (46)
T ss_dssp SCCCSCCC
T ss_pred CCCCCCCC
Confidence 56777775
No 6
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=13.32 E-value=74 Score=22.34 Aligned_cols=13 Identities=54% Similarity=0.657 Sum_probs=10.9
Q ss_pred CcchHHHHHHHHH
Q 031648 137 SAPEHNLLKLLEE 149 (155)
Q Consensus 137 SAPEh~ll~llee 149 (155)
.-|||-||.||++
T Consensus 31 i~~eHLLlaLl~~ 43 (145)
T 3fes_A 31 VGSEHILLGLLRE 43 (145)
T ss_dssp ECHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhC
Confidence 3589999999986
No 7
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=13.24 E-value=76 Score=16.88 Aligned_cols=8 Identities=13% Similarity=0.027 Sum_probs=5.2
Q ss_pred CCCcCCCC
Q 031648 72 DLPIQCPL 79 (155)
Q Consensus 72 D~Pv~CP~ 79 (155)
++|++|+.
T Consensus 38 ~kp~~C~~ 45 (46)
T 2eor_A 38 EKPSGPSS 45 (46)
T ss_dssp CCCSSSTT
T ss_pred CCCCCCCC
Confidence 46777764
No 8
>1ijd_A Light-harvesting protein B-800/820, alpha chain; pigment-protein complex, alpha-helix apoproteins, intergral protein, photosynthesis; HET: FME RPA BCL; 3.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1
Probab=12.92 E-value=56 Score=21.75 Aligned_cols=8 Identities=50% Similarity=1.460 Sum_probs=5.9
Q ss_pred cccchhHH
Q 031648 85 LNDGRIWK 92 (155)
Q Consensus 85 ~~DG~iw~ 92 (155)
||||+||-
T Consensus 1 Mn~~kiWl 8 (53)
T 1ijd_A 1 MNQGKIWT 8 (53)
T ss_dssp CTTGGGGG
T ss_pred CCCceEEE
Confidence 67888883
No 9
>1nkz_A Light-harvesting protein B-800/850, alpha chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_A* 2fkw_A*
Probab=12.75 E-value=53 Score=21.87 Aligned_cols=7 Identities=57% Similarity=1.664 Sum_probs=5.5
Q ss_pred cccchhH
Q 031648 85 LNDGRIW 91 (155)
Q Consensus 85 ~~DG~iw 91 (155)
||||+||
T Consensus 1 Mn~~kiW 7 (53)
T 1nkz_A 1 MNQGKIW 7 (53)
T ss_dssp CCCTTGG
T ss_pred CCCceEE
Confidence 6788888
No 10
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=12.33 E-value=85 Score=16.81 Aligned_cols=8 Identities=13% Similarity=0.027 Sum_probs=5.5
Q ss_pred CCCcCCCC
Q 031648 72 DLPIQCPL 79 (155)
Q Consensus 72 D~Pv~CP~ 79 (155)
++|++|+.
T Consensus 38 ~k~~~C~~ 45 (46)
T 2em4_A 38 EKPSGPSS 45 (46)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 56777764
Done!