Query 031648
Match_columns 155
No_of_seqs 33 out of 35
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 04:55:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031648.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031648hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zfda_ g.37.1.1 (A:) SWI5 zin 30.2 9.4 0.00069 21.1 1.2 10 72-81 1-10 (32)
2 d1bhia_ g.37.1.1 (A:) Transact 25.2 10 0.00073 22.5 0.7 12 71-82 3-14 (38)
3 d1sp2a_ g.37.1.1 (A:) Transcri 22.3 15 0.0011 19.9 1.0 9 73-81 1-9 (31)
4 d1ubdc4 g.37.1.1 (C:381-408) Y 17.0 22 0.0016 19.1 1.0 9 73-81 1-9 (28)
5 d1p7aa_ g.37.1.1 (A:) Kruppel- 13.9 28 0.002 19.1 0.9 15 71-85 8-22 (37)
6 d1a1ia1 g.37.1.1 (A:103-131) Z 13.0 24 0.0018 18.9 0.4 9 73-81 1-9 (29)
7 d2glia3 g.37.1.1 (A:168-197) F 12.9 36 0.0026 18.3 1.1 9 73-81 1-9 (30)
8 d1g40a4 g.18.1.1 (A:185-243) C 11.2 41 0.003 19.1 1.1 12 75-89 1-12 (59)
9 d1yeya1 c.1.11.2 (A:184-435) R 10.8 31 0.0022 24.6 0.4 12 85-96 241-252 (252)
10 d2ct1a2 g.37.1.1 (A:8-43) Tran 10.6 31 0.0022 18.9 0.3 13 71-83 5-17 (36)
No 1
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.19 E-value=9.4 Score=21.10 Aligned_cols=10 Identities=40% Similarity=0.843 Sum_probs=8.1
Q ss_pred CCCcCCCCCC
Q 031648 72 DLPIQCPLPE 81 (155)
Q Consensus 72 D~Pv~CP~Pe 81 (155)
|||++|+-|.
T Consensus 1 ErP~~C~~pg 10 (32)
T d1zfda_ 1 DRPYSCDHPG 10 (32)
T ss_dssp CCSBCCCCTT
T ss_pred CcCeECcCCC
Confidence 6899998863
No 2
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.19 E-value=10 Score=22.45 Aligned_cols=12 Identities=33% Similarity=0.719 Sum_probs=9.6
Q ss_pred CCCCcCCCCCCC
Q 031648 71 NDLPIQCPLPEP 82 (155)
Q Consensus 71 ~D~Pv~CP~Pe~ 82 (155)
.|||+.|..|-=
T Consensus 3 ddkPF~C~~pGC 14 (38)
T d1bhia_ 3 DDKPFLCTAPGC 14 (38)
T ss_dssp TCCCEECCCTTT
T ss_pred CCCceecCCCCc
Confidence 399999988753
No 3
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.33 E-value=15 Score=19.94 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=6.8
Q ss_pred CCcCCCCCC
Q 031648 73 LPIQCPLPE 81 (155)
Q Consensus 73 ~Pv~CP~Pe 81 (155)
||++||-|.
T Consensus 1 kpf~C~~~~ 9 (31)
T d1sp2a_ 1 RPFMCTWSY 9 (31)
T ss_dssp CCCBCCSTT
T ss_pred CcCCCcCCC
Confidence 688998764
No 4
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.02 E-value=22 Score=19.06 Aligned_cols=9 Identities=33% Similarity=0.844 Sum_probs=6.7
Q ss_pred CCcCCCCCC
Q 031648 73 LPIQCPLPE 81 (155)
Q Consensus 73 ~Pv~CP~Pe 81 (155)
||++|+.|.
T Consensus 1 rPf~C~~~g 9 (28)
T d1ubdc4 1 RPYVCPFDG 9 (28)
T ss_dssp CCCCCCSTT
T ss_pred CCcCCCCCC
Confidence 688888763
No 5
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.88 E-value=28 Score=19.08 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=10.3
Q ss_pred CCCCcCCCCCCCccc
Q 031648 71 NDLPIQCPLPEPSIL 85 (155)
Q Consensus 71 ~D~Pv~CP~Pe~sI~ 85 (155)
.+||++|+.=.-+-.
T Consensus 8 geKPy~C~~C~k~F~ 22 (37)
T d1p7aa_ 8 GIKPFQCPDCDRSFS 22 (37)
T ss_dssp CSSSBCCTTTCCCBS
T ss_pred CccCeEeCCCCCEec
Confidence 479999987544433
No 6
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.03 E-value=24 Score=18.93 Aligned_cols=9 Identities=33% Similarity=0.929 Sum_probs=6.6
Q ss_pred CCcCCCCCC
Q 031648 73 LPIQCPLPE 81 (155)
Q Consensus 73 ~Pv~CP~Pe 81 (155)
||++|+.|.
T Consensus 1 Kp~~C~~~g 9 (29)
T d1a1ia1 1 RPYACPVES 9 (29)
T ss_dssp CCEECCSTT
T ss_pred CCeECCCCC
Confidence 688888764
No 7
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.85 E-value=36 Score=18.26 Aligned_cols=9 Identities=22% Similarity=0.634 Sum_probs=6.5
Q ss_pred CCcCCCCCC
Q 031648 73 LPIQCPLPE 81 (155)
Q Consensus 73 ~Pv~CP~Pe 81 (155)
||++|+-|.
T Consensus 1 kp~~C~~~g 9 (30)
T d2glia3 1 KPHKCTFEG 9 (30)
T ss_dssp CCCCCCSTT
T ss_pred CCeeCCCCC
Confidence 688888653
No 8
>d1g40a4 g.18.1.1 (A:185-243) Complement control protein {Vaccinia virus [TaxId: 10245]}
Probab=11.19 E-value=41 Score=19.10 Aligned_cols=12 Identities=42% Similarity=1.143 Sum_probs=7.9
Q ss_pred cCCCCCCCcccccch
Q 031648 75 IQCPLPEPSILNDGR 89 (155)
Q Consensus 75 v~CP~Pe~sI~~DG~ 89 (155)
|+||.|. | .+|.
T Consensus 1 V~C~~P~--~-~ng~ 12 (59)
T d1g40a4 1 VKCPHPT--I-SNGY 12 (59)
T ss_dssp CCCCCCC--C-SSEE
T ss_pred CCCcCCC--C-CCCE
Confidence 7898774 4 3554
No 9
>d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]}
Probab=10.76 E-value=31 Score=24.61 Aligned_cols=12 Identities=42% Similarity=0.966 Sum_probs=9.6
Q ss_pred cccchhHHHHHH
Q 031648 85 LNDGRIWKERVS 96 (155)
Q Consensus 85 ~~DG~iw~er~s 96 (155)
..||+.|+||++
T Consensus 241 ~~~g~~~~~~~~ 252 (252)
T d1yeya1 241 YPDGRFWVEDLA 252 (252)
T ss_dssp TTTSHHHHHHCC
T ss_pred CCCCcHHhhccC
Confidence 458999999973
No 10
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.63 E-value=31 Score=18.95 Aligned_cols=13 Identities=15% Similarity=0.467 Sum_probs=8.9
Q ss_pred CCCCcCCCCCCCc
Q 031648 71 NDLPIQCPLPEPS 83 (155)
Q Consensus 71 ~D~Pv~CP~Pe~s 83 (155)
.+||++|+.=.-+
T Consensus 5 gekP~~C~~C~k~ 17 (36)
T d2ct1a2 5 GEKPYECYICHAR 17 (36)
T ss_dssp CCCSEECTTTCCE
T ss_pred CCCCEeCCCCccc
Confidence 4689999864433
Done!