BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031651
(155 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VNE|A Chain A, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VNE|B Chain B, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VQ5|A Chain A, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
pdb|2VQ5|B Chain B, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
Length = 201
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYXXXXXXXXXXXXXXXXXXLHIKFKPGTPG 64
+ HELEV A W +Y L K + L F PG
Sbjct: 31 IHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEIIGDGGVGTILDXTFVPGE-- 88
Query: 65 FAG-YKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYEL 123
F YKEKFI +DN+ R++ +EGGYLD+G T + ++ G DSC+IKS+ EY +
Sbjct: 89 FPHEYKEKFILVDNEHRLKKVQXIEGGYLDLGVTYYXDTIHVVPTGKDSCVIKSSTEYHV 148
Query: 124 REE 126
+ E
Sbjct: 149 KPE 151
>pdb|3US7|A Chain A, Crystal Structure Of Phytohormone Binding Protein From
Medicago Truncatula In Complex With Gibberellic Acid
(Ga3)
Length = 156
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 29/73 (39%)
Query: 54 LHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSC 113
L F PG +E E D VVEGGYL+ G + ++ F+ +
Sbjct: 54 LIFNFLPGIAPVNYQREVITEYDELSHTIGLQVVEGGYLNQGLSYYKTTFQFSAISENKT 113
Query: 114 IIKSTIEYELREE 126
++ I Y+ E
Sbjct: 114 LVNVKISYDHESE 126
>pdb|2FLH|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|3C0V|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
pdb|3C0V|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
pdb|3C0V|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
pdb|3C0V|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
Length = 155
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 69 KEKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYE 122
+E+ E D V+EGGYL G + ++ F++ E D ++ I Y+
Sbjct: 68 REEITEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYD 121
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 98 LFRVIFEIIEKGSDSCIIKSTIEYELR 124
+F++ F+++E+GS S +I +T+E LR
Sbjct: 195 IFKLCFQVLEQGSSSSLIVATLESLLR 221
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 1060
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 98 LFRVIFEIIEKGSDSCIIKSTIEYELR 124
+F++ F+++E+GS S +I +T+E LR
Sbjct: 195 IFKLCFQVLEQGSSSSLIVATLESLLR 221
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 98 LFRVIFEIIEKGSDSCIIKSTIEYELR 124
+F++ F+++E+GS S +I +T+E LR
Sbjct: 193 IFKLCFQVLEQGSSSSLIVATLESLLR 219
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 98 LFRVIFEIIEKGSDSCIIKSTIEYELR 124
+F++ F+++E+GS S +I +T+E LR
Sbjct: 195 IFKLCFQVLEQGSSSSLIVATLESLLR 221
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 98 LFRVIFEIIEKGSDSCIIKSTIEYELR 124
+F++ F+++E+GS S +I +T+E LR
Sbjct: 195 IFKLCFQVLEQGSSSSLIVATLESLLR 221
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 98 LFRVIFEIIEKGSDSCIIKSTIEYELR 124
+F++ F+++E+GS S +I +T+E LR
Sbjct: 195 IFKLCFQVLEQGSSSSLIVATLESLLR 221
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 98 LFRVIFEIIEKGSDSCIIKSTIEYELR 124
+F++ F+++E+GS S +I +T+E LR
Sbjct: 195 IFKLCFQVLEQGSSSSLIVATLESLLR 221
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 98 LFRVIFEIIEKGSDSCIIKSTIEYELR 124
+F++ F+++E+GS S +I +T+E LR
Sbjct: 195 IFKLCFQVLEQGSSSSLIVATLESLLR 221
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 98 LFRVIFEIIEKGSDSCIIKSTIEYELR 124
+F++ F+++E+GS S +I +T+E LR
Sbjct: 195 IFKLCFQVLEQGSSSSLIVATLESLLR 221
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 98 LFRVIFEIIEKGSDSCIIKSTIEYELR 124
+F++ F+++E+GS S +I +T+E LR
Sbjct: 195 IFKLCFQVLEQGSSSSLIVATLESLLR 221
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 28.9 bits (63), Expect = 1.1, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 98 LFRVIFEIIEKGSDSCIIKSTIEYELR 124
+F++ F+++E+GS S +I +T+E LR
Sbjct: 195 IFKLCFQVLEQGSSSSLIVATLESLLR 221
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
Length = 1023
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 21/27 (77%)
Query: 98 LFRVIFEIIEKGSDSCIIKSTIEYELR 124
+F++ F+++E+G+ S +I +T+E LR
Sbjct: 195 IFKLCFQVLEQGASSSLIVATLESLLR 221
>pdb|3RMJ|A Chain A, Crystal Structure Of Truncated Alpha-Isopropylmalate
Synthase From Neisseria Meningitidis
pdb|3RMJ|B Chain B, Crystal Structure Of Truncated Alpha-Isopropylmalate
Synthase From Neisseria Meningitidis
Length = 370
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 62 TPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVG---FTLFRVIFEIIEKGSDSCIIKST 118
+PG A KE+ I + + D++E G+ F I + I K S C +
Sbjct: 26 SPGAAMTKEEKIRVARQLEKLGVDIIEAGFAAASPGDFEAVNAIAKTITK-STVCSLSRA 84
Query: 119 IEYELRE--EAAANASFVSIDTVAKIAEISKNYLL 151
IE ++R+ EA A A I T + I Y L
Sbjct: 85 IERDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKL 119
>pdb|3BAN|A Chain A, The Crystal Structure Of Mannonate Dehydratase From
Streptococcus Suis Serotype2
pdb|3BAN|B Chain B, The Crystal Structure Of Mannonate Dehydratase From
Streptococcus Suis Serotype2
pdb|3BDK|A Chain A, Crystal Structure Of Streptococcus Suis Mannonate
Dehydratase Complexed With Substrate Analogue
pdb|3BDK|B Chain B, Crystal Structure Of Streptococcus Suis Mannonate
Dehydratase Complexed With Substrate Analogue
pdb|3DBN|A Chain A, Crystal Structure Of The Streptoccocus Suis Serotype2 D-
Mannonate Dehydratase In Complex With Its Substrate
pdb|3DBN|B Chain B, Crystal Structure Of The Streptoccocus Suis Serotype2 D-
Mannonate Dehydratase In Complex With Its Substrate
pdb|3FVM|A Chain A, Crystal Structure Of Steptococcus Suis Mannonate
Dehydratase With Metal Mn++
pdb|3FVM|B Chain B, Crystal Structure Of Steptococcus Suis Mannonate
Dehydratase With Metal Mn++
Length = 386
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 12 NVPAGQAWELYGTIKLVKLVEK 33
+VP GQAW L ++L K+VE+
Sbjct: 54 DVPVGQAWPLENILELKKMVEE 75
>pdb|2I6T|A Chain A, Orthorhombic Structure Of The Ldh Domain Of Human
Ubiquitin- Conjugating Enzyme E2-Like Isoform A
pdb|2I6T|B Chain B, Orthorhombic Structure Of The Ldh Domain Of Human
Ubiquitin- Conjugating Enzyme E2-Like Isoform A
pdb|3DL2|A Chain A, Hexagonal Structure Of The Ldh Domain Of Human Ubiquitin-
Conjugating Enzyme E2-Like Isoform A
pdb|3DL2|B Chain B, Hexagonal Structure Of The Ldh Domain Of Human Ubiquitin-
Conjugating Enzyme E2-Like Isoform A
Length = 303
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 75 IDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTI-EYELREEAAANASF 133
++NKK+V + GY D+ +F + I+ S +IK+T+ E + E+ ++AS
Sbjct: 234 VNNKKKVHSVSALAKGYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASS 293
Query: 134 V 134
+
Sbjct: 294 I 294
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,112,641
Number of Sequences: 62578
Number of extensions: 135615
Number of successful extensions: 218
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 21
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)