Query 031651
Match_columns 155
No_of_seqs 117 out of 873
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 03:30:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 1.2E-41 2.5E-46 252.3 19.1 148 1-153 2-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 6.5E-37 1.4E-41 225.9 19.5 147 3-153 1-148 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 2E-17 4.4E-22 117.6 15.8 135 4-150 2-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.7 2.4E-14 5.2E-19 101.8 19.6 106 4-123 3-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.6 1.8E-13 4E-18 98.7 15.2 130 6-150 2-142 (144)
6 cd08861 OtcD1_ARO-CYC_like N-t 99.5 1.1E-12 2.5E-17 94.3 14.1 113 5-126 1-113 (142)
7 cd08865 SRPBCC_10 Ligand-bindi 99.5 3.2E-12 7E-17 90.5 14.8 107 5-123 1-108 (140)
8 cd07819 SRPBCC_2 Ligand-bindin 99.5 1.5E-11 3.2E-16 87.7 17.5 111 4-126 3-115 (140)
9 cd07813 COQ10p_like Coenzyme Q 99.4 3.1E-12 6.7E-17 92.0 12.9 132 5-150 1-135 (138)
10 cd07822 SRPBCC_4 Ligand-bindin 99.4 8.3E-11 1.8E-15 83.5 16.2 111 5-124 2-112 (141)
11 cd08862 SRPBCC_Smu440-like Lig 99.3 2E-10 4.3E-15 81.7 16.4 107 4-124 2-108 (138)
12 cd07812 SRPBCC START/RHO_alpha 99.3 1.7E-10 3.6E-15 79.7 14.6 111 6-126 2-113 (141)
13 cd07825 SRPBCC_7 Ligand-bindin 99.3 2E-10 4.4E-15 82.7 14.5 138 5-150 2-143 (144)
14 cd07818 SRPBCC_1 Ligand-bindin 99.3 3.6E-10 7.9E-15 82.0 14.3 112 4-126 3-119 (150)
15 cd07814 SRPBCC_CalC_Aha1-like 99.3 3.7E-10 8.1E-15 80.2 14.0 136 5-150 2-137 (139)
16 cd05018 CoxG Carbon monoxide d 99.2 7.3E-10 1.6E-14 79.2 14.9 113 4-125 2-114 (144)
17 cd08860 TcmN_ARO-CYC_like N-te 99.2 1.4E-09 3E-14 80.0 15.5 114 3-127 1-116 (146)
18 cd07820 SRPBCC_3 Ligand-bindin 99.2 9.5E-10 2.1E-14 79.2 12.8 109 5-124 1-112 (137)
19 cd07817 SRPBCC_8 Ligand-bindin 99.2 1.8E-09 3.8E-14 76.9 13.6 108 4-126 1-108 (139)
20 cd07824 SRPBCC_6 Ligand-bindin 99.2 4E-09 8.6E-14 76.8 15.2 109 5-125 3-113 (146)
21 PF03364 Polyketide_cyc: Polyk 99.1 1.8E-08 4E-13 71.3 14.9 105 11-127 1-107 (130)
22 cd07823 SRPBCC_5 Ligand-bindin 99.0 1.4E-08 3E-13 73.9 14.0 113 6-126 2-116 (146)
23 PRK10724 hypothetical protein; 98.9 4.7E-08 1E-12 72.9 12.8 110 4-125 16-125 (158)
24 COG3427 Carbon monoxide dehydr 98.7 4.3E-07 9.3E-12 66.7 12.4 138 5-151 3-144 (146)
25 PF06240 COXG: Carbon monoxide 98.6 2.3E-06 4.9E-11 62.2 13.2 109 8-125 2-110 (140)
26 COG5637 Predicted integral mem 98.5 7E-07 1.5E-11 67.5 9.2 108 4-126 71-179 (217)
27 cd08898 SRPBCC_CalC_Aha1-like_ 98.5 1.8E-06 4E-11 61.8 11.3 137 4-151 2-144 (145)
28 cd07826 SRPBCC_CalC_Aha1-like_ 98.5 1.1E-05 2.4E-10 58.5 13.5 138 5-151 2-141 (142)
29 cd08899 SRPBCC_CalC_Aha1-like_ 98.4 9.8E-06 2.1E-10 59.8 13.0 127 4-153 12-138 (157)
30 cd08894 SRPBCC_CalC_Aha1-like_ 98.3 2E-05 4.3E-10 56.7 12.2 134 5-151 2-138 (139)
31 cd08895 SRPBCC_CalC_Aha1-like_ 98.3 0.00015 3.3E-09 52.5 15.5 136 4-151 1-145 (146)
32 cd08900 SRPBCC_CalC_Aha1-like_ 98.2 0.00028 6.1E-09 50.9 16.6 137 4-151 1-142 (143)
33 cd08893 SRPBCC_CalC_Aha1-like_ 98.2 6.7E-05 1.4E-09 52.9 12.8 133 4-150 1-134 (136)
34 cd08897 SRPBCC_CalC_Aha1-like_ 98.2 0.00014 2.9E-09 52.0 14.0 128 4-151 1-132 (133)
35 cd08876 START_1 Uncharacterize 98.2 0.00038 8.2E-09 52.7 16.7 141 4-149 42-193 (195)
36 cd08896 SRPBCC_CalC_Aha1-like_ 98.2 0.0001 2.2E-09 53.5 13.0 138 5-151 2-145 (146)
37 cd08891 SRPBCC_CalC Ligand-bin 98.0 0.0003 6.4E-09 51.2 13.2 132 5-151 2-148 (149)
38 cd08901 SRPBCC_CalC_Aha1-like_ 97.9 0.00026 5.7E-09 50.8 10.9 130 5-152 2-132 (136)
39 COG3832 Uncharacterized conser 97.8 0.0012 2.7E-08 48.4 13.5 138 2-151 7-148 (149)
40 cd08892 SRPBCC_Aha1 Putative h 97.7 0.0031 6.6E-08 44.7 13.2 99 5-122 2-100 (126)
41 COG2867 Oligoketide cyclase/li 97.6 0.00035 7.5E-09 51.3 7.9 111 4-125 3-113 (146)
42 PF08327 AHSA1: Activator of H 97.6 0.0045 9.7E-08 42.8 12.5 121 12-150 1-123 (124)
43 cd08863 SRPBCC_DUF1857 DUF1857 97.5 0.012 2.6E-07 43.2 13.9 122 5-147 2-132 (141)
44 cd08873 START_STARD14_15-like 97.3 0.057 1.2E-06 42.9 16.7 143 5-153 79-235 (235)
45 PTZ00220 Activator of HSP-90 A 97.2 0.016 3.4E-07 41.6 12.0 122 11-150 1-126 (132)
46 PF08982 DUF1857: Domain of un 97.2 0.038 8.3E-07 40.9 14.2 70 5-84 2-79 (149)
47 cd08874 START_STARD9-like C-te 96.2 0.23 5.1E-06 38.5 12.8 117 5-126 47-178 (205)
48 cd08913 START_STARD14-like Lip 95.6 0.91 2E-05 36.1 14.9 143 5-153 83-240 (240)
49 PF10698 DUF2505: Protein of u 95.2 0.87 1.9E-05 33.6 12.0 108 6-124 2-128 (159)
50 cd08905 START_STARD1-like Chol 95.0 1.2 2.5E-05 34.4 12.7 141 5-150 51-206 (209)
51 cd08914 START_STARD15-like Lip 94.8 1.4 3.1E-05 35.0 12.7 117 4-123 79-205 (236)
52 cd00177 START Lipid-binding ST 94.5 1.3 2.8E-05 32.4 14.0 120 5-127 41-168 (193)
53 cd08903 START_STARD5-like Lipi 93.2 3 6.5E-05 32.1 14.3 141 5-150 48-205 (208)
54 cd08877 START_2 Uncharacterize 93.1 3.1 6.8E-05 31.9 15.8 141 4-151 47-213 (215)
55 cd08868 START_STARD1_3_like Ch 93.1 3.1 6.7E-05 31.8 15.3 144 5-151 50-206 (208)
56 cd08906 START_STARD3-like Chol 92.2 4.3 9.4E-05 31.3 15.1 118 5-127 51-182 (209)
57 cd08870 START_STARD2_7-like Li 91.8 4.7 0.0001 30.9 13.5 141 5-150 52-206 (209)
58 cd08871 START_STARD10-like Lip 90.0 7.4 0.00016 30.0 13.3 119 5-127 49-176 (222)
59 COG4276 Uncharacterized conser 89.8 6.3 0.00014 28.9 12.5 114 3-126 2-120 (153)
60 cd08869 START_RhoGAP C-termina 87.5 11 0.00023 28.7 15.9 118 5-127 46-171 (197)
61 cd08911 START_STARD7-like Lipi 87.3 11 0.00025 28.8 14.2 117 5-124 47-177 (207)
62 cd08867 START_STARD4_5_6-like 84.1 16 0.00035 27.7 14.1 139 4-150 47-205 (206)
63 smart00234 START in StAR and p 84.1 15 0.00033 27.4 16.7 143 5-152 47-202 (206)
64 cd08908 START_STARD12-like C-t 80.6 24 0.00053 27.3 12.1 117 4-127 53-178 (204)
65 PF01852 START: START domain; 69.1 45 0.00097 24.8 15.8 143 5-154 48-204 (206)
66 PF11485 DUF3211: Protein of u 68.7 43 0.00093 24.4 9.7 40 5-47 3-42 (136)
67 PF11687 DUF3284: Domain of un 66.7 42 0.0009 23.5 9.8 96 7-123 3-102 (120)
68 cd08872 START_STARD11-like Cer 63.3 72 0.0016 25.1 13.3 141 5-153 54-227 (235)
69 cd08910 START_STARD2-like Lipi 52.9 1E+02 0.0022 23.6 12.9 137 5-150 51-204 (207)
70 KOG3294 WW domain binding prot 28.5 2.7E+02 0.0058 22.5 6.4 52 87-149 84-135 (261)
71 TIGR02208 lipid_A_msbB lipid A 28.5 1.3E+02 0.0028 24.3 4.9 38 116-155 248-285 (305)
72 KOG0301 Phospholipase A2-activ 27.7 4.1E+02 0.009 24.7 8.1 66 11-87 155-228 (745)
73 PF02087 Nitrophorin: Nitropho 26.5 2.9E+02 0.0063 21.0 6.0 26 67-92 49-74 (178)
74 cd02853 MTHase_N_term Maltooli 25.7 1.9E+02 0.004 18.5 4.8 60 31-99 12-71 (85)
75 KOG3177 Oligoketide cyclase/li 23.8 3.7E+02 0.008 21.2 7.1 103 11-124 76-181 (227)
76 PRK05645 lipid A biosynthesis 23.5 1.8E+02 0.0038 23.3 4.8 38 116-155 238-275 (295)
77 PRK08706 lipid A biosynthesis 22.2 1.8E+02 0.004 23.1 4.6 38 116-155 232-269 (289)
78 cd08885 RHO_alpha_C_1 C-termin 21.6 3.3E+02 0.0071 19.8 7.0 44 78-122 80-123 (190)
79 PRK06860 lipid A biosynthesis 20.9 2.2E+02 0.0049 22.9 4.9 38 116-155 251-288 (309)
80 PF03000 NPH3: NPH3 family; I 20.4 72 0.0016 25.7 1.9 16 140-155 220-235 (258)
81 PRK08943 lipid A biosynthesis 20.4 2.2E+02 0.0049 23.0 4.9 38 116-155 257-294 (314)
82 PF02922 CBM_48: Carbohydrate- 20.3 2.3E+02 0.0051 17.6 6.4 56 31-90 15-74 (85)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=1.2e-41 Score=252.33 Aligned_cols=148 Identities=34% Similarity=0.536 Sum_probs=135.6
Q ss_pred CcceEEEEEEecCChHhHhchhhccccccchhhhcCC-cceEEEEcCCCCCc-eEEEEEecCCCCCcceEEEEEEEEeCC
Q 031651 1 MKGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT-VEEIEVVEGDGGVG-TILHIKFKPGTPGFAGYKEKFIEIDNK 78 (155)
Q Consensus 1 m~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~-v~s~e~~eGdg~~G-svR~~~~~~g~~~~~~~kErl~~~D~~ 78 (155)
++++++.++++++||+++|++++ +.++++|+++|+ |++++++||||++| |||.|+|..+ ++.+.+|||++.+|++
T Consensus 2 ~~~~~~~E~~~~~~a~k~~ka~~--~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~-~~~~~~Kekve~~D~~ 78 (151)
T PF00407_consen 2 GVGKLEVEVEVKVSADKLWKAFK--SSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPG-GPFKYVKEKVEAIDEE 78 (151)
T ss_dssp CEEEEEEEEEESS-HHHHHHHHT--THHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETT-SSEEEEEEEEEEEETT
T ss_pred CcEEEEEEEEecCCHHHHHHHHh--cCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCC-CCcceeEEEEEeecCC
Confidence 46899999999999999999998 688999999999 99999999998877 9999999998 7789999999999999
Q ss_pred CCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhhC
Q 031651 79 KRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNN 153 (155)
Q Consensus 79 ~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~ 153 (155)
+|+++|+++||+++. .|++|.+++++.|+++|+|+++|+++|+++++.. ++|..+++++..|+|++|+||++|
T Consensus 79 ~~~~~y~viEGd~l~-~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~-~~p~~~~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 79 NKTITYTVIEGDVLG-DYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDV-PPPEKYLDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp TTEEEEEEEEETTGT-TTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSC-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcEEEEEEEeccccc-cEEEEEEEEEecCCCCCceEEEEEEEEEecCCCC-CCcHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999887 6999999999999999999999999999999863 344567899999999999999997
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=6.5e-37 Score=225.86 Aligned_cols=147 Identities=30% Similarity=0.480 Sum_probs=130.6
Q ss_pred ceEEEEEEecCChHhHhchhhccccccch-hhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCe
Q 031651 3 GQLSHELEVNVPAGQAWELYGTIKLVKLV-EKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRV 81 (155)
Q Consensus 3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~l-p~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~ 81 (155)
|+++++++|+|||++||++++ ||.+.+ +.|+|.|++|++++|+|++||+|.|+|.++ ++.+.+||||+.+|+++|+
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~~--~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~-~~~~~~kE~l~~~D~~~~~ 77 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAFV--LDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPG-GKVKYVKERIDAVDEENKT 77 (148)
T ss_pred CcEEEEEEecCCHHHHHHHHh--cChhhccccccccccEEEEEecCCCCceEEEEEEcCC-CcceEEEEEEEEEcccccE
Confidence 689999999999999999999 887534 556677999999999999999999999988 5678999999999999999
Q ss_pred EEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhhC
Q 031651 82 RVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNN 153 (155)
Q Consensus 82 ~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~ 153 (155)
++|++++|+++..+|++|+++++|.|.++++|+++|+++|++.+++ .++|..+++.+..++++++.|++.+
T Consensus 78 ~~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (148)
T cd07816 78 YKYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDA-EPPEEEIKAGKEKALKMFKAVEAYL 148 (148)
T ss_pred EEEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCC-CCCHHHHHhHHHHHHHHHHHHHhcC
Confidence 9999999998654699999999999998889999999999999886 3444467899999999999998753
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.78 E-value=2e-17 Score=117.65 Aligned_cols=135 Identities=19% Similarity=0.312 Sum_probs=108.8
Q ss_pred eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651 4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV 83 (155)
Q Consensus 4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 83 (155)
.++.+++|++|+++||+++. |+.+ +++|+|.++++++.++..++|+++.+.+..+ . .+++++..+|+.++.++
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~--d~~~-~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~g-~---~~~~~i~~~~~~~~~i~ 74 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLS--DFGG-LHKWHPAVASCELEGGGPGVGAVRTVTLKDG-G---TVRERLLALDDAERRYS 74 (140)
T ss_pred cEEEEEEECCCHHHHHHHHh--CcCc-hhhhccCcceEEeecCCCCCCeEEEEEeCCC-C---EEEEEehhcCccCCEEE
Confidence 57889999999999999999 9876 7899999999998776546899999998765 3 78999999998888999
Q ss_pred EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHHH
Q 031651 84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNYL 150 (155)
Q Consensus 84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~l 150 (155)
|++.+|+. ++.++.+++++.|.++|+|.++|+..|++.+.. +.+. ...+.....++.|.++|
T Consensus 75 ~~~~~~~~---~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 75 YRIVEGPL---PVKNYVATIRVTPEGDGGTRVTWTAEFDPPEGL--TDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred EEecCCCC---CcccceEEEEEEECCCCccEEEEEEEEecCCCc--chHHHHHHHHHHHHHHHHHHHHhh
Confidence 99998743 677889999999988878999999999988652 2211 23455555566666554
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.68 E-value=2.4e-14 Score=101.76 Aligned_cols=106 Identities=22% Similarity=0.316 Sum_probs=89.1
Q ss_pred eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651 4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV 83 (155)
Q Consensus 4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 83 (155)
+++.+++|++||++||+++. |+.+ +++|+|.+.++++.+++ ++|..+.++.... ..+++++..+|++++.+.
T Consensus 3 ~~~~~~~v~a~~e~V~~~l~--d~~~-~~~w~~~~~~~~~~~~~-~~~~~~~~~~~g~----~~~~~~i~~~~~~~~~~~ 74 (139)
T PF10604_consen 3 KVEVSIEVPAPPEAVWDLLS--DPEN-WPRWWPGVKSVELLSGG-GPGTERTVRVAGR----GTVREEITEYDPEPRRIT 74 (139)
T ss_dssp EEEEEEEESS-HHHHHHHHT--TTTG-GGGTSTTEEEEEEEEEC-STEEEEEEEECSC----SEEEEEEEEEETTTTEEE
T ss_pred EEEEEEEECCCHHHHHHHHh--Chhh-hhhhhhceEEEEEcccc-ccceeEEEEeccc----cceeEEEEEecCCCcEEE
Confidence 78999999999999999999 9876 79999999999987633 4566677776542 379999999998899999
Q ss_pred EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEE
Q 031651 84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYEL 123 (155)
Q Consensus 84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~ 123 (155)
|++. . .++.++..++++.|.++| |.++|+.+|++
T Consensus 75 ~~~~--~---~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~ 108 (139)
T PF10604_consen 75 WRFV--P---SGFTNGTGRWRFEPVGDG-TRVTWTVEFEP 108 (139)
T ss_dssp EEEE--S---SSSCEEEEEEEEEEETTT-EEEEEEEEEEE
T ss_pred EEEE--e---cceeEEEEEEEEEEcCCC-EEEEEEEEEEE
Confidence 9996 1 157778999999999865 99999999998
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.58 E-value=1.8e-13 Score=98.69 Aligned_cols=130 Identities=15% Similarity=0.115 Sum_probs=92.2
Q ss_pred EEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCce-------EEEEEecCCCCCcceEEEEEEEEeCC
Q 031651 6 SHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGT-------ILHIKFKPGTPGFAGYKEKFIEIDNK 78 (155)
Q Consensus 6 ~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~Gs-------vR~~~~~~g~~~~~~~kErl~~~D~~ 78 (155)
+.++.|++|+++||+++. |+.+ +|+|+|++++++++++.+ .+. .+.+...- ...+..++...++.
T Consensus 2 ~~~~~i~a~~~~Vw~~l~--D~~~-~~~w~p~v~~~~~l~~~~-~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~ 73 (144)
T cd08866 2 VARVRVPAPPETVWAVLT--DYDN-LAEFIPNLAESRLLERNG-NRVVLEQTGKQGILFFKF----EARVVLELREREEF 73 (144)
T ss_pred eEEEEECCCHHHHHHHHh--Chhh-HHhhCcCceEEEEEEcCC-CEEEEEEeeeEEEEeeee----eEEEEEEEEEecCC
Confidence 578899999999999999 9987 799999999999887653 122 11111100 12456667777767
Q ss_pred CCeEEEEEEeCCccCcCceEEEEEEEEEeeCC-CceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHHH
Q 031651 79 KRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGS-DSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNYL 150 (155)
Q Consensus 79 ~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~-g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~l 150 (155)
++.+.|++++|+ +..|.++.++.|.++ |+|.++|..+|++... .+... ...+.+..+++.|.+.+
T Consensus 74 ~~~i~~~~~~g~-----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~--~p~~l~~~~~~~~~~~~l~~lr~~a 142 (144)
T cd08866 74 PRELDFEMVEGD-----FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF--APVFLVEFVLRQDLPTNLLAIRAEA 142 (144)
T ss_pred CceEEEEEcCCc-----hhceEEEEEEEECCCCCeEEEEEEEEEEeCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999998764 556899999999887 6899999999998764 23322 12344445555555443
No 6
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.50 E-value=1.1e-12 Score=94.32 Aligned_cols=113 Identities=16% Similarity=0.116 Sum_probs=83.7
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEE
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVT 84 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y 84 (155)
++++++|++|+++||+++. |+.+ +|+|+|. .+++.++++++...++.+..... +. ..-.+....+|++.+.+.|
T Consensus 1 ~~~s~~i~ap~~~V~~~l~--D~~~-~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~i~~ 74 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLA--DAER-WPEFLPT-VHVERLELDGGVERLRMWATAFD-GS-VHTWTSRRVLDPEGRRIVF 74 (142)
T ss_pred CeEEEEEcCCHHHHHHHHH--hHHh-hhccCCC-ceEEEEEEcCCEEEEEEEEEcCC-Cc-EEEEEEEEEEcCCCCEEEE
Confidence 3688999999999999999 9987 7999997 66665554322224555555422 21 1222444567888999999
Q ss_pred EEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031651 85 DVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE 126 (155)
Q Consensus 85 ~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~ 126 (155)
..+++.. .+..+.++.++.|.++++|.|+|+.+|++...
T Consensus 75 ~~~~~~~---~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~ 113 (142)
T cd08861 75 RQEEPPP---PVASMSGEWRFEPLGGGGTRVTLRHDFTLGID 113 (142)
T ss_pred EEeeCCC---ChhhheeEEEEEECCCCcEEEEEEEEEEECCC
Confidence 9987644 46778899999999877899999999998754
No 7
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.48 E-value=3.2e-12 Score=90.54 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=84.3
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCC-CCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGD-GGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV 83 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGd-g~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 83 (155)
++++++|++|+++||+++. |+.+ +++|.|.+.+++...+. .++|+...+....+ +..-.+++++...| .++.++
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~--d~~~-~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~-g~~~~~~~~v~~~~-p~~~~~ 75 (140)
T cd08865 1 VEESIVIERPVEEVFAYLA--DFEN-APEWDPGVVEVEKITDGPVGVGTRYHQVRKFL-GRRIELTYEITEYE-PGRRVV 75 (140)
T ss_pred CceEEEEcCCHHHHHHHHH--Cccc-hhhhccCceEEEEcCCCCCcCccEEEEEEEec-CceEEEEEEEEEec-CCcEEE
Confidence 4678999999999999999 9977 79999998888876543 46788888876533 32335789999887 568899
Q ss_pred EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEE
Q 031651 84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYEL 123 (155)
Q Consensus 84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~ 123 (155)
|....++. .+..++++.+.++ +|.++|+.+|+.
T Consensus 76 ~~~~~~~~------~~~~~~~~~~~~~-~t~v~~~~~~~~ 108 (140)
T cd08865 76 FRGSSGPF------PYEDTYTFEPVGG-GTRVRYTAELEP 108 (140)
T ss_pred EEecCCCc------ceEEEEEEEEcCC-ceEEEEEEEEcc
Confidence 99865532 2578999998765 699999999997
No 8
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.47 E-value=1.5e-11 Score=87.66 Aligned_cols=111 Identities=17% Similarity=0.194 Sum_probs=81.5
Q ss_pred eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCC-CCCceEEEEEecCCCCCcceEEEEEEEEe-CCCCe
Q 031651 4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGD-GGVGTILHIKFKPGTPGFAGYKEKFIEID-NKKRV 81 (155)
Q Consensus 4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGd-g~~GsvR~~~~~~g~~~~~~~kErl~~~D-~~~~~ 81 (155)
+++.+++|++|+++||+++. |+.+ +|+|+|.+.++++++++ ++.+....+++..+ + ...+-+..++ +..+.
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~--D~~~-~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~ 75 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLA--DVEA-YPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAY-G---IKDTYALEYTWDGAGS 75 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHh--Chhh-hhhhCcceEEEEEeccCCCCCEEEEEEEEeee-e---EEEEEEEEEEEcCCCc
Confidence 68899999999999999999 9977 89999999999986654 33333444555433 2 1112122222 22678
Q ss_pred EEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031651 82 RVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE 126 (155)
Q Consensus 82 ~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~ 126 (155)
++|+..+|. +...+..++++.|.++ +|.++|+.++++...
T Consensus 76 i~~~~~~~~----~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~~ 115 (140)
T cd07819 76 VSWTLVEGE----GNRSQEGSYTLTPKGD-GTRVTFDLTVELTVP 115 (140)
T ss_pred EEEEEeccc----ceeEEEEEEEEEECCC-CEEEEEEEEEEecCC
Confidence 999998775 4667889999999877 799999999998553
No 9
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.45 E-value=3.1e-12 Score=92.03 Aligned_cols=132 Identities=14% Similarity=0.173 Sum_probs=95.2
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEE
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVT 84 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y 84 (155)
++.+++|++|++.||+++. |..+ +|+|+|++++++++++++ .+....+.+.-+ +....+..++. +++ ++++++
T Consensus 1 ~~~s~~i~ap~~~v~~~i~--D~~~-~~~~~p~~~~~~vl~~~~-~~~~~~~~~~~~-~~~~~~~~~~~-~~~-~~~i~~ 73 (138)
T cd07813 1 YSKSRLVPYSAEQMFDLVA--DVER-YPEFLPWCTASRVLERDE-DELEAELTVGFG-GIRESFTSRVT-LVP-PESIEA 73 (138)
T ss_pred CeEEEEcCCCHHHHHHHHH--HHHh-hhhhcCCccccEEEEcCC-CEEEEEEEEeec-cccEEEEEEEE-ecC-CCEEEE
Confidence 3678999999999999999 9977 899999999999998764 344444555433 22234455555 665 778999
Q ss_pred EEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHHH
Q 031651 85 DVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNYL 150 (155)
Q Consensus 85 ~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~l 150 (155)
..++|+ ++.+.++.++.|.++|+|.++|..+|++.+.. +... .+.+....+.+.+.+-+
T Consensus 74 ~~~~g~-----~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l--~~~l~~~~~~~~~~~~l~~f~~~~ 135 (138)
T cd07813 74 ELVDGP-----FKHLEGEWRFKPLGENACKVEFDLEFEFKSRL--LEALAGLVFDEVAKKMVDAFEKRA 135 (138)
T ss_pred EecCCC-----hhhceeEEEEEECCCCCEEEEEEEEEEECCHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988773 55578999999998889999999999987542 2211 23455555555555544
No 10
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.38 E-value=8.3e-11 Score=83.46 Aligned_cols=111 Identities=16% Similarity=0.116 Sum_probs=83.3
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEE
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVT 84 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y 84 (155)
++.++.|++|+++||+++. |+.+ +++|+|.+..++... .++|+...+.+..+.+....+.+++..+|+ .+.+.|
T Consensus 2 v~~~~~i~ap~~~Vw~~~~--d~~~-~~~w~~~~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~ 75 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLT--DFPS-YPEWNPFVRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEP-PRRLAW 75 (141)
T ss_pred eEEEEEecCCHHHHHHHHh--cccc-ccccChhheeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcC-CCEeEE
Confidence 6789999999999999999 8876 799999877766321 456778777765431223467888999976 578999
Q ss_pred EEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEc
Q 031651 85 DVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELR 124 (155)
Q Consensus 85 ~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~ 124 (155)
+...++. ..-....++.+.+.++++|.++|+..|...
T Consensus 76 ~~~~~~~---~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~ 112 (141)
T cd07822 76 RGGLPFP---GLLDGEHSFELEPLGDGGTRFVHRETFSGL 112 (141)
T ss_pred EecCCCC---cEeeEEEEEEEEEcCCCcEEEEEeeEEEEE
Confidence 9876654 223456789999986678999999887643
No 11
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.34 E-value=2e-10 Score=81.73 Aligned_cols=107 Identities=9% Similarity=0.015 Sum_probs=81.7
Q ss_pred eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651 4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV 83 (155)
Q Consensus 4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 83 (155)
+++.+++|+||+++||+++. |+.+ +|+|+|++.++++..+..++|+...++...+ . .+..++.++++. +.++
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~--d~~~-~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~~-~---~~~~~i~~~~p~-~~~~ 73 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLT--DVEN-WPAWTPSVETVRLEGPPPAVGSSFKMKPPGL-V---RSTFTVTELRPG-HSFT 73 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHH--hhhh-cccccCcceEEEEecCCCCCCcEEEEecCCC-C---ceEEEEEEecCC-CEEE
Confidence 47889999999999999999 9876 7999999999997654326787766665433 2 577888888754 5688
Q ss_pred EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEc
Q 031651 84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELR 124 (155)
Q Consensus 84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~ 124 (155)
|+... + ...+..++++++.++++|.++|+.+|...
T Consensus 74 ~~~~~-~-----~~~~~~~~~~~~~~~~~t~l~~~~~~~~~ 108 (138)
T cd08862 74 WTGPA-P-----GISAVHRHEFEAKPDGGVRVTTSESLSGP 108 (138)
T ss_pred EEecC-C-----CEEEEEEEEEEEcCCCcEEEEEEEEeecc
Confidence 87543 2 23446789999987678999999988753
No 12
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.32 E-value=1.7e-10 Score=79.74 Aligned_cols=111 Identities=21% Similarity=0.247 Sum_probs=87.2
Q ss_pred EEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCC-CCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEE
Q 031651 6 SHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGD-GGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVT 84 (155)
Q Consensus 6 ~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGd-g~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y 84 (155)
+.++.|++|+++||+++. |+.+ +++|.|.+.++++.++. ...|....+.+.. +.......++..+++ +..++|
T Consensus 2 ~~~~~i~a~~~~v~~~l~--d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~-~~~~~~ 75 (141)
T cd07812 2 EASIEIPAPPEAVWDLLS--DPER-WPEWSPGLERVEVLGGGEGGVGARFVGGRKG--GRRLTLTSEVTEVDP-PRPGRF 75 (141)
T ss_pred cEEEEeCCCHHHHHHHHh--Chhh-hhhhCcccceEEEcCCCCccceeEEEEEecC--CccccceEEEEEecC-CCceEE
Confidence 578899999999999999 8876 79999999988877654 3566766666641 222367888888876 778999
Q ss_pred EEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031651 85 DVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE 126 (155)
Q Consensus 85 ~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~ 126 (155)
+...++.. ..+..++++.+.++++|.++|+.++.+...
T Consensus 76 ~~~~~~~~----~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~ 113 (141)
T cd07812 76 RVTGGGGG----VDGTGEWRLEPEGDGGTRVTYTVEYDPPGP 113 (141)
T ss_pred EEecCCCC----cceeEEEEEEECCCCcEEEEEEEEEecCCc
Confidence 99877642 457889999998765899999999998754
No 13
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.30 E-value=2e-10 Score=82.68 Aligned_cols=138 Identities=11% Similarity=0.092 Sum_probs=91.8
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCC--CCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeE
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGD--GGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVR 82 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGd--g~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~ 82 (155)
++.+++|+||+++||+++. |+.+ +|+|.|.........++ -++|+...+..... +....+..++..+++ ++.+
T Consensus 2 i~~~~~i~ap~e~Vw~~l~--d~~~-~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~-g~~~~~~~~v~~~~p-~~~l 76 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLA--DPRR-HPEIDGSGTVREAIDGPRILAVGDVFRMAMRLD-GGPYRITNHVVAFEE-NRLI 76 (144)
T ss_pred eEEEEEEeCCHHHHHHHHh--Cccc-cceeCCCCccccccCCCccCCCCCEEEEEEEcC-CCceEEEEEEEEECC-CCEE
Confidence 6889999999999999999 9976 79999862222222333 36788887776542 222356677887755 5569
Q ss_pred EEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCccc-C-CchhhHHHHHHHHHHHHHHH
Q 031651 83 VTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAA-N-ASFVSIDTVAKIAEISKNYL 150 (155)
Q Consensus 83 ~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~-~-~~~~~~~~~~~~~k~~e~~l 150 (155)
+|+..-.+. +......++++++.++|+|.++++..|...+.... . ............++.|++||
T Consensus 77 ~~~~~~~~~---~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 77 AWRPGPAGQ---EPGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EEEccCCCC---CCCceeEEEEEEECCCCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 998642121 12224567888898777899999999886644211 1 11124566777778887776
No 14
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.26 E-value=3.6e-10 Score=81.98 Aligned_cols=112 Identities=12% Similarity=0.019 Sum_probs=81.3
Q ss_pred eEEEEEEecCChHhHhchhhccccccchhhhcCCcce---EEE--EcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCC
Q 031651 4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEE---IEV--VEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNK 78 (155)
Q Consensus 4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s---~e~--~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~ 78 (155)
+++.++.|++|+++||+++. |+.+ +|+|+|.... ++. .+++.++|+...++...+.+ ....++..++ .
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~--D~~~-~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~---~~~~~v~~~~-p 75 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVN--DLKN-WPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVG---EGEMEITESV-P 75 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHh--Cccc-CcccCchhhcCcceEEEecCCCCCCCeEEEEecCCccc---ceEEEEEecC-C
Confidence 57899999999999999999 9977 7999997433 221 12334688887776554212 3456777775 4
Q ss_pred CCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031651 79 KRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE 126 (155)
Q Consensus 79 ~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~ 126 (155)
++.+.|++..++++ + .....++++.|.+ +||.++|+.+|+....
T Consensus 76 ~~~i~~~~~~~~~~--~-~~~~~~~~~~~~~-~gT~v~~~~~~~~~~~ 119 (150)
T cd07818 76 NERIEYELRFIKPF--E-ATNDVEFTLEPVG-GGTKVTWGMSGELPFP 119 (150)
T ss_pred CcEEEEEEEecCCc--c-ccceEEEEEEEcC-CceEEEEEEEecCCch
Confidence 67899999865442 1 2567899999994 5799999999986543
No 15
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.26 E-value=3.7e-10 Score=80.25 Aligned_cols=136 Identities=15% Similarity=0.057 Sum_probs=88.0
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEE
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVT 84 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y 84 (155)
++.+++|+||+++||+++. |+.+ +|+|+|.+..++.....| |+.+......+ +....+..++..+|+. +.+.|
T Consensus 2 i~~s~~I~a~~~~Vw~~l~--d~~~-~~~w~~~~~~~~~~~~~G--g~~~~~~~~~~-g~~~~~~~~i~~~~~~-~~i~~ 74 (139)
T cd07814 2 ITIEREFDAPPELVWRALT--DPEL-LAQWFGPTTTAEMDLRVG--GRWFFFMTGPD-GEEGWVSGEVLEVEPP-RRLVF 74 (139)
T ss_pred eEEEEEecCCHHHHHHHcC--CHHH-HHhhhCcCCceEEcccCC--ceEEEEEECCC-CCEEeccEEEEEEcCC-CeEEE
Confidence 6789999999999999999 8866 899999622222111122 67765554432 3334678899999754 78999
Q ss_pred EEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHH
Q 031651 85 DVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYL 150 (155)
Q Consensus 85 ~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l 150 (155)
+...++.. +.-....++++.|.+ ++|.++|+.+|.+........-.........++..|.+||
T Consensus 75 ~~~~~~~~--~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 137 (139)
T cd07814 75 TWAFSDET--PGPETTVTVTLEETG-GGTRLTLTHSGFPEEDAEQEAREGMEEGWTGTLDRLKALL 137 (139)
T ss_pred EecccCCC--CCCceEEEEEEEECC-CCEEEEEEEEccChHhHHHHHHhCHhhHHHHHHHHHHHHh
Confidence 99876530 223457888899988 4799999999987532100000012344445555555554
No 16
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.24 E-value=7.3e-10 Score=79.21 Aligned_cols=113 Identities=13% Similarity=0.166 Sum_probs=76.0
Q ss_pred eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651 4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV 83 (155)
Q Consensus 4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 83 (155)
+++.++++++|+++||+++. |..+ +++|+|+++++++++++ .......+.+... +..-...-++..+|+ ++.+.
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~--D~~~-~~~w~p~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~ 75 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALN--DPEV-LARCIPGCESLEKIGPN-EYEATVKLKVGPV-KGTFKGKVELSDLDP-PESYT 75 (144)
T ss_pred eeeeEEEecCCHHHHHHHhc--CHHH-HHhhccchhhccccCCC-eEEEEEEEEEccE-EEEEEEEEEEEecCC-CcEEE
Confidence 46788999999999999999 9976 89999998888866533 2111111222110 101112445555444 46777
Q ss_pred EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcC
Q 031651 84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELRE 125 (155)
Q Consensus 84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~ 125 (155)
+.....+.. ....+..++++.|. +++|.++|+.+|++.+
T Consensus 76 ~~~~~~~~~--~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g 114 (144)
T cd05018 76 ITGEGKGGA--GFVKGTARVTLEPD-GGGTRLTYTADAQVGG 114 (144)
T ss_pred EEEEEcCCC--ceEEEEEEEEEEec-CCcEEEEEEEEEEEcc
Confidence 776543321 35678999999998 5689999999999765
No 17
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.22 E-value=1.4e-09 Score=79.98 Aligned_cols=114 Identities=18% Similarity=0.305 Sum_probs=80.5
Q ss_pred ceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCC-CCceEEEEEecCCCCCc-ceEEEEEEEEeCCCC
Q 031651 3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDG-GVGTILHIKFKPGTPGF-AGYKEKFIEIDNKKR 80 (155)
Q Consensus 3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg-~~GsvR~~~~~~g~~~~-~~~kErl~~~D~~~~ 80 (155)
|..+++|+|++||++||+++. |..+ +|.|+|.+.++++++.++ +.|+.-.+.+..+ |.. .+..++ .+|...+
T Consensus 1 ~~~~~si~i~a~~~~v~~lva--Dv~~-~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~-g~~~~w~s~~--~~~~~~~ 74 (146)
T cd08860 1 GRTDNSIVIDAPLDLVWDMTN--DIAT-WPDLFSEYAEAEVLEEDGDTVRFRLTMHPDAN-GTVWSWVSER--TLDPVNR 74 (146)
T ss_pred CcceeEEEEcCCHHHHHHHHH--hhhh-hhhhccceEEEEEEEecCCeEEEEEEEEeccC-CEEEEEEEEE--EecCCCc
Confidence 346799999999999999999 9987 899999999999887642 4443222233222 211 222222 2688888
Q ss_pred eEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCc
Q 031651 81 VRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEA 127 (155)
Q Consensus 81 ~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~ 127 (155)
++.+.-.. .. |+..-..+.+|+|.++| |.|++..+|+..++.
T Consensus 75 ~i~~~~~~-~~---p~~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~ 116 (146)
T cd08860 75 TVRARRVE-TG---PFAYMNIRWEYTEVPEG-TRMRWVQDFEMKPGA 116 (146)
T ss_pred EEEEEEec-CC---CcceeeeeEEEEECCCC-EEEEEEEEEEECCCC
Confidence 88874211 12 57777889999998664 999999999977654
No 18
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.18 E-value=9.5e-10 Score=79.25 Aligned_cols=109 Identities=16% Similarity=0.216 Sum_probs=82.4
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCC---CCCceEEEEEecCCCCCcceEEEEEEEEeCCCCe
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGD---GGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRV 81 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGd---g~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~ 81 (155)
++.+++|++|+++||+.+. |..+ +|+|+|.+.++++++.+ ..+|+.-.+.+... +..-.-+-+++.++ .++.
T Consensus 1 ~~~s~~I~ap~e~V~~~~~--d~~~-~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~-~~~~~w~~~it~~~-p~~~ 75 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHS--RPDN-LERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHF-GIPQRWTTEITEVE-PPRR 75 (137)
T ss_pred CeEEEEcCCCHHHHHHHHc--Ccch-HHhcCCCCCCeEEEecCCCcccCCcEEEEEEEec-CCceEEEEEEEEEc-CCCe
Confidence 4678999999999999999 9877 79999998899987433 24578777777654 32123455666664 4667
Q ss_pred EEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEc
Q 031651 82 RVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELR 124 (155)
Q Consensus 82 ~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~ 124 (155)
+++....|+ +..+..++.+.+.++ ||.++++++|+..
T Consensus 76 f~~~~~~G~-----~~~w~h~~~f~~~~~-gT~vt~~v~~~~p 112 (137)
T cd07820 76 FVDEQVSGP-----FRSWRHTHRFEAIGG-GTLMTDRVEYRLP 112 (137)
T ss_pred EEEEeccCC-----chhCEEEEEEEECCC-ceEEEEEEEEeCC
Confidence 999887654 445677888988776 6999999999973
No 19
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.17 E-value=1.8e-09 Score=76.87 Aligned_cols=108 Identities=17% Similarity=0.175 Sum_probs=78.6
Q ss_pred eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651 4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV 83 (155)
Q Consensus 4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 83 (155)
.++.+++|++|+++||+++. |+.+ +|+|.|.+++++++.+. +....+.+..| .......++..++ .++.+.
T Consensus 1 ~v~~~i~I~ap~e~V~~~~~--D~~~-~~~w~~~~~~~~~~~~~---~~~~~~~~~~g--~~~~~~~~v~~~~-~~~~i~ 71 (139)
T cd07817 1 TVEKSITVNVPVEEVYDFWR--DFEN-LPRFMSHVESVEQLDDT---RSHWKAKGPAG--LSVEWDAEITEQV-PNERIA 71 (139)
T ss_pred CeeEEEEeCCCHHHHHHHHh--Chhh-hHHHhhhhcEEEEcCCC---ceEEEEecCCC--CcEEEEEEEeccC-CCCEEE
Confidence 36889999999999999999 9977 79999999999976442 22222333323 2234566666554 455699
Q ss_pred EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031651 84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE 126 (155)
Q Consensus 84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~ 126 (155)
|....|. + .+..++.+.+.++++|.++++..|++...
T Consensus 72 ~~~~~~~-----~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~~ 108 (139)
T cd07817 72 WRSVEGA-----D-PNAGSVRFRPAPGRGTRVTLTIEYEPPGG 108 (139)
T ss_pred EEECCCC-----C-CcceEEEEEECCCCCeEEEEEEEEECCcc
Confidence 9876653 2 34688889997777899999999997653
No 20
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.15 E-value=4e-09 Score=76.78 Aligned_cols=109 Identities=12% Similarity=0.193 Sum_probs=77.1
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEc--CCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeE
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVE--GDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVR 82 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~e--Gdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~ 82 (155)
.+.+.+|++|+++||+++. |..+ +|+|+|.++++++++ ++.++|+.-++......+....+.-++... +..+.+
T Consensus 3 ~~~~~~i~ap~e~Vw~~~t--D~~~-~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~-~p~~~~ 78 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLV--DAES-WPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRI-EPLSLL 78 (146)
T ss_pred ceEEEEecCCHHHHHHHHh--Chhh-cchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEee-cCCcEE
Confidence 4567789999999999999 9876 899999999999887 334677765554332212112344455554 457788
Q ss_pred EEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcC
Q 031651 83 VTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELRE 125 (155)
Q Consensus 83 ~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~ 125 (155)
.|.. +|+. . ...++++.+.++ ||.++++.+++..+
T Consensus 79 ~~~~-~g~~---~---~~~~~~~~~~~~-gt~vt~~~~~~~~~ 113 (146)
T cd07824 79 EVRA-SGDL---E---GVGRWTLAPDGS-GTVVRYDWEVRTTK 113 (146)
T ss_pred EEEE-EEee---e---EEEEEEEEEcCC-CEEEEEEEEEEcCH
Confidence 8885 5643 1 257888988655 69999999999743
No 21
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.06 E-value=1.8e-08 Score=71.26 Aligned_cols=105 Identities=21% Similarity=0.334 Sum_probs=75.5
Q ss_pred ecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEEEEEeCC
Q 031651 11 VNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTDVVEGG 90 (155)
Q Consensus 11 i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~ileg~ 90 (155)
|++|+++||+++. |..+ +|.|+|.++++++++.++. +..-.+....+ +.......++... ...+ +.+...+|
T Consensus 1 V~ap~~~V~~~i~--D~e~-~~~~~p~~~~v~vl~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~-~~~~~~~g- 72 (130)
T PF03364_consen 1 VNAPPEEVWSVIT--DYEN-YPRFFPPVKEVRVLERDGD-GMRARWEVKFG-GIKRSWTSRVTED-PPER-IRFEQISG- 72 (130)
T ss_dssp ESS-HHHHHHHHT--TGGG-HHHHCTTEEEEEEEEEECC-EEEEEEEECTT-TTCEEEEEEEEEE-CTTT-EEEESSET-
T ss_pred CCCCHHHHHHHHH--HHHH-HHHhCCCCceEEEEEeCCC-eEEEEEEEecC-CEEEEEEEEEEEE-Eeee-eeeeecCC-
Confidence 6899999999999 9976 8999999999999987754 33334555544 3334556666643 4444 77777665
Q ss_pred ccCcCceEEEEEEEEEeeCC--CceEEEEEEEEEEcCCc
Q 031651 91 YLDVGFTLFRVIFEIIEKGS--DSCIIKSTIEYELREEA 127 (155)
Q Consensus 91 ~~~~~~~~y~~ti~v~~~~~--g~s~v~W~~~y~~~~~~ 127 (155)
+++.+..+.++.+.++ |+|.++++.+|+.....
T Consensus 73 ----~~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~ 107 (130)
T PF03364_consen 73 ----PFKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPG 107 (130)
T ss_dssp ----TEEEEEEEEEEEEETTECCEEEEEEEEEEEEETSS
T ss_pred ----CchhcEEEEEEEECCCCcCCCEEEEEEEEEEecCc
Confidence 4788999999999875 46778888888875443
No 22
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.04 E-value=1.4e-08 Score=73.86 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=71.2
Q ss_pred EEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceE--EEEEEEEeCCCCeEE
Q 031651 6 SHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGY--KEKFIEIDNKKRVRV 83 (155)
Q Consensus 6 ~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~--kErl~~~D~~~~~~~ 83 (155)
+.+++|++|+++||+++. |..+ ++.|+|++++++..+++ .. .-.+++.-+ +-...+ +=++..++...+.+.
T Consensus 2 ~~~~~v~a~pe~vw~~l~--D~~~-~~~~~pg~~~~~~~~~~-~~--~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 74 (146)
T cd07823 2 ENEFTVPAPPDRVWALLL--DIER-VAPCLPGASLTEVEGDD-EY--KGTVKVKLG-PISASFKGTARLLEDDEAARRAV 74 (146)
T ss_pred CceEEecCCHHHHHHHhc--CHHH-HHhcCCCceeccccCCC-eE--EEEEEEEEc-cEEEEEEEEEEEEeccCCCcEEE
Confidence 568899999999999999 9866 78999999988854322 21 122333222 111122 224555555788888
Q ss_pred EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031651 84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE 126 (155)
Q Consensus 84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~ 126 (155)
+..-..+.....--....++++.| .+++|.++|+++++..+.
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g~ 116 (146)
T cd07823 75 LEATGKDARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALTGK 116 (146)
T ss_pred EEEEEecCCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEeeE
Confidence 876431111001114567788888 446899999999986543
No 23
>PRK10724 hypothetical protein; Provisional
Probab=98.91 E-value=4.7e-08 Score=72.91 Aligned_cols=110 Identities=14% Similarity=0.205 Sum_probs=82.6
Q ss_pred eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651 4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV 83 (155)
Q Consensus 4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 83 (155)
.++.++.|++|++++|+++. |..+ +|+|+|..+.+++++-++. +.+..++.+-+ |-......|.. +++ .+++.
T Consensus 16 ~i~~~~~v~~s~~~v~~lv~--Dve~-yp~flp~~~~s~vl~~~~~-~~~a~l~v~~~-g~~~~f~srv~-~~~-~~~I~ 88 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLVN--DVQS-YPQFLPGCTGSRVLESTPG-QMTAAVDVSKA-GISKTFTTRNQ-LTS-NQSIL 88 (158)
T ss_pred eEEEEEEecCCHHHHHHHHH--HHHH-HHHhCcccCeEEEEEecCC-EEEEEEEEeeC-CccEEEEEEEE-ecC-CCEEE
Confidence 57888999999999999999 9876 8999999888888766532 33444444333 32334555555 444 44899
Q ss_pred EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcC
Q 031651 84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELRE 125 (155)
Q Consensus 84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~ 125 (155)
+.+++|+ ++.+.+..++.|.++++|.|+...+|+...
T Consensus 89 ~~~~~Gp-----F~~l~g~W~f~p~~~~~t~V~~~l~fef~s 125 (158)
T PRK10724 89 MQLVDGP-----FKKLIGGWKFTPLSQEACRIEFHLDFEFTN 125 (158)
T ss_pred EEecCCC-----hhhccceEEEEECCCCCEEEEEEEEEEEch
Confidence 9999873 566889999999887789999999999653
No 24
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.73 E-value=4.3e-07 Score=66.73 Aligned_cols=138 Identities=17% Similarity=0.225 Sum_probs=88.2
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEE
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVT 84 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y 84 (155)
++-+..|++|+++||+++. |... +...+|+++|++ .+|+.-.+.+ .+.+..-.+ .-..+=++..+|+..++++-
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~--dpe~-~a~ciPG~qs~e-~~g~e~~~~v-~l~ig~l~~-~~~g~~~~~~v~~~~~~~~i 76 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLN--DPEQ-VAACIPGVQSVE-TNGDEYTAKV-KLKIGPLKG-TFSGRVRFVNVDEPPRSITI 76 (146)
T ss_pred ccceEEecCCHHHHHHHhc--CHHH-HHhhcCCcceee-ecCCeEEEEE-EEeecceeE-EEEEEEEEccccCCCcEEEE
Confidence 5678889999999999998 8866 678899999999 5676321222 223221101 01234456667788888888
Q ss_pred EEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccC-C---chhhHHHHHHHHHHHHHHHh
Q 031651 85 DVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAAN-A---SFVSIDTVAKIAEISKNYLL 151 (155)
Q Consensus 85 ~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~-~---~~~~~~~~~~~~k~~e~~l~ 151 (155)
..-.|... ..-+..+.+++.|.+++ |++.|.+.-+-.+-..-- . ...+.......+.-|.++|.
T Consensus 77 ~g~G~~~~--g~~~~~~~v~l~~~g~g-t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~ 144 (146)
T COG3427 77 NGSGGGAA--GFADGTVDVQLEPSGEG-TRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELA 144 (146)
T ss_pred Eeeccccc--ceeeeeeEEEEEEcCCC-cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88653332 46667888899998876 999999887754322111 1 00234444555555555554
No 25
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.61 E-value=2.3e-06 Score=62.21 Aligned_cols=109 Identities=18% Similarity=0.211 Sum_probs=66.5
Q ss_pred EEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEEEEE
Q 031651 8 ELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTDVV 87 (155)
Q Consensus 8 ~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~il 87 (155)
+.+|++|+++||+++. |... +-..+|++++++... +.--+.++ +.+.+- ...=..+=++..+|+.++.. ..+-
T Consensus 2 s~~v~a~~~~vw~~l~--D~~~-l~~ciPG~~~~e~~~-~~~~~~~~-v~vG~i-~~~~~g~~~~~~~~~~~~~~-~~~~ 74 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLS--DPEN-LARCIPGVESIEKVG-DEYKGKVK-VKVGPI-KGTFDGEVRITEIDPPESYT-LEFE 74 (140)
T ss_dssp EEEECS-HHHHHHHHT---HHH-HHHHSTTEEEEEEEC-TEEEEEEE-EESCCC-EEEEEEEEEEEEEETTTEEE-EEEE
T ss_pred cEEecCCHHHHHHHhc--CHHH-HHhhCCCcEEeeecC-cEEEEEEE-EEeccE-EEEEEEEEEEEEcCCCcceE-eeee
Confidence 5789999999999999 8865 678999999999765 42112222 222111 00012344666677666653 3333
Q ss_pred eCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcC
Q 031651 88 EGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELRE 125 (155)
Q Consensus 88 eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~ 125 (155)
..+.. .-.+..+.+++...++++|.+.|+++++-.+
T Consensus 75 g~g~~--~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G 110 (140)
T PF06240_consen 75 GRGRG--GGSSASANITLSLEDDGGTRVTWSADVEVGG 110 (140)
T ss_dssp EEECT--CCEEEEEEEEEEECCCTCEEEEEEEEEEEEC
T ss_pred ccCCc--cceEEEEEEEEEcCCCCCcEEEEEEEEEEcc
Confidence 22222 2334566777777666569999999999655
No 26
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.55 E-value=7e-07 Score=67.55 Aligned_cols=108 Identities=12% Similarity=0.155 Sum_probs=81.6
Q ss_pred eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecC-CCCCcceEEEEEEEEeCCCCeE
Q 031651 4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKP-GTPGFAGYKEKFIEIDNKKRVR 82 (155)
Q Consensus 4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~-g~~~~~~~kErl~~~D~~~~~~ 82 (155)
.+++.++|+.|+++||..++ |+.+ +|.||.++.|+++.+... | +|+... +....++ .-+|. -|..+..|
T Consensus 71 ~v~~~V~I~kPae~vy~~W~--dLe~-lP~~Mkhl~SVkVlddkr---S--rW~~~ap~g~~v~W-ea~it-~d~~~e~I 140 (217)
T COG5637 71 EVEVQVTIDKPAEQVYAYWR--DLEN-LPLWMKHLDSVKVLDDKR---S--RWKANAPLGLEVEW-EAEIT-KDIPGERI 140 (217)
T ss_pred EEEEEEEeCChHHHHHHHHH--hhhh-hhHHHHhhceeeccCCCc---c--ceeEcCCCCceEEE-eehhh-ccCCCcEE
Confidence 35677889999999999999 9988 799999999999876542 2 355432 2122222 33444 57899999
Q ss_pred EEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031651 83 VTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE 126 (155)
Q Consensus 83 ~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~ 126 (155)
.|.=++|.-+. - +..++|.+..+..|.|+.+++|.+-+.
T Consensus 141 ~W~Sl~Ga~v~--N---sG~VrF~~~pg~~t~V~v~lsY~~Pgg 179 (217)
T COG5637 141 QWESLPGARVE--N---SGAVRFYDAPGDSTEVKVTLSYRPPGG 179 (217)
T ss_pred eeecCCCCcCC--C---CccEEeeeCCCCceEEEEEEEecCCcc
Confidence 99999996442 1 578889888777789999999997665
No 27
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.55 E-value=1.8e-06 Score=61.77 Aligned_cols=137 Identities=12% Similarity=0.115 Sum_probs=78.8
Q ss_pred eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651 4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV 83 (155)
Q Consensus 4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 83 (155)
.++.+++|+||+++||+++. |... +++|.|... ....-|.+..| .+.+.+.. .....-++..+ +.++.+.
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~t--d~~~-~~~W~~~~~-~~~~~~~~~~g---~~~~~~~~--~~~~~~~i~~~-~p~~~l~ 71 (145)
T cd08898 2 RIERTILIDAPRERVWRALT--DPEH-FGQWFGVKL-GPFVVGEGATG---EITYPGYE--HGVFPVTVVEV-DPPRRFS 71 (145)
T ss_pred eeEEEEEecCCHHHHHHHhc--Chhh-hhhcccccC-CCcccCCccee---EEecCCCC--ccceEEEEEEe-CCCcEEE
Confidence 57899999999999999998 8755 789998621 11111222223 23343221 11345677777 5667778
Q ss_pred EEEEeCCc---cC-cCceEEEEEEEEEeeCCCceEEEEEEE-EEEcCCcccC-CchhhHHHHHHHHHHHHHHHh
Q 031651 84 TDVVEGGY---LD-VGFTLFRVIFEIIEKGSDSCIIKSTIE-YELREEAAAN-ASFVSIDTVAKIAEISKNYLL 151 (155)
Q Consensus 84 Y~ileg~~---~~-~~~~~y~~ti~v~~~~~g~s~v~W~~~-y~~~~~~~~~-~~~~~~~~~~~~~k~~e~~l~ 151 (155)
|+...... .. ..-.....++++.+.++ +|.++++-. |...++.... ......+.-..++..|++||-
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 72 FRWHPPAIDPGEDYSAEPSTLVEFTLEPIAG-GTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred EEecCCCcccccccCCCCceEEEEEEEecCC-cEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 88643320 00 01122457888888764 699998866 4322111000 111234556677777887774
No 28
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.46 E-value=1.1e-05 Score=58.50 Aligned_cols=138 Identities=15% Similarity=0.099 Sum_probs=78.0
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhcCC-cceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT-VEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV 83 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~-v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 83 (155)
++.+.++++|+++||+++- |.. ++.+|+.. --.+...+.|-.+|..-.+.+....|..-.+.=++..+++ .+.+.
T Consensus 2 l~i~r~~~ap~e~Vw~a~T--dpe-~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p-~~~l~ 77 (142)
T cd07826 2 IVITREFDAPRELVFRAHT--DPE-LVKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTP-PERIV 77 (142)
T ss_pred EEEEEEECCCHHHHHHHhC--CHH-HHhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcC-CCEEE
Confidence 5677889999999999998 764 46777743 1122223344344444444443211222234556777754 44555
Q ss_pred EEEE-eCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHh
Q 031651 84 TDVV-EGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLL 151 (155)
Q Consensus 84 Y~il-eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~ 151 (155)
|+.- ++.. .+. ...++++.+.+ |+|.++.+..|...............+.-...+..|++||.
T Consensus 78 ~t~~~~~~~--~~~--s~v~~~l~~~~-~gT~l~l~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 78 QTEEFEGLP--DGV--ALETVTFTELG-GRTRLTATSRYPSKEARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred EEeEecCCC--CCc--eEEEEEEEECC-CCEEEEEEEEeCCHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5542 2221 122 35688888875 57998887666422111000111245677788888888885
No 29
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.44 E-value=9.8e-06 Score=59.79 Aligned_cols=127 Identities=15% Similarity=0.111 Sum_probs=80.5
Q ss_pred eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651 4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV 83 (155)
Q Consensus 4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 83 (155)
+++.+++|++|+++||+++. |+.+ ++.|.|.. ..+-.+|...++.+... + .....-++..+|+ ++.+.
T Consensus 12 ~i~~~~~i~Ap~e~Vw~alt--dp~~-~~~W~~~~------~~~~~~G~~~~~~~~~~-~-~~~~~~~v~e~~p-~~~l~ 79 (157)
T cd08899 12 TLRFERLLPAPIEDVWAALT--DPER-LARWFAPG------TGDLRVGGRVEFVMDDE-E-GPNATGTILACEP-PRLLA 79 (157)
T ss_pred EEEEEEecCCCHHHHHHHHc--CHHH-HHhhcCCC------CCCcccCceEEEEecCC-C-CCccceEEEEEcC-CcEEE
Confidence 57888899999999999999 8755 79999832 12224555555665431 1 1245677777754 46888
Q ss_pred EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhhC
Q 031651 84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNN 153 (155)
Q Consensus 84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~ 153 (155)
|+...++. . ...+++|++.+ ++|.++.+.++.+.... .. ...+.-..+...|.+||-+.
T Consensus 80 ~~~~~~~~----~--~~~~~~l~~~~-~gT~v~~~~~~~~~~~~--~~--~~~~GW~~~L~~Lk~~~e~~ 138 (157)
T cd08899 80 FTWGEGGG----E--SEVRFELAPEG-DGTRLTLTHRLLDERFG--AG--AVGAGWHLCLDVLEAALEGG 138 (157)
T ss_pred EEecCCCC----C--ceEEEEEEEcC-CCEEEEEEEeccCchhh--hh--hhcccHHHHHHHHHHHHcCC
Confidence 88754431 1 25677788765 57888888777643311 11 12355556667777776554
No 30
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.33 E-value=2e-05 Score=56.74 Aligned_cols=134 Identities=14% Similarity=0.133 Sum_probs=76.7
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhc-CC-cceEEEEcCCCCCceEEEEEe-cCCCCCcceEEEEEEEEeCCCCe
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEY-DT-VEEIEVVEGDGGVGTILHIKF-KPGTPGFAGYKEKFIEIDNKKRV 81 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~-P~-v~s~e~~eGdg~~GsvR~~~~-~~g~~~~~~~kErl~~~D~~~~~ 81 (155)
++.+..+++|+++||+++. |.. .+.+|+ |. +.... .+.+..+|..-.+.+ .++ |..-...=++.++ +.++.
T Consensus 2 l~~~r~i~ap~e~Vw~a~t--~p~-~l~~W~~p~~~~~~~-~~~d~~~GG~~~~~~~~~~-g~~~~~~g~v~e~-~p~~~ 75 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWT--DPE-HLAQWWGPEGFTNTT-HEFDLRPGGRWRFVMHGPD-GTDYPNRIVFLEI-EPPER 75 (139)
T ss_pred EEEEEEeCCCHHHHHHHhC--CHH-HHhhccCcCCCcceE-EEEEecCCCEEEEEEECCC-CCEecceEEEEEE-cCCCE
Confidence 5778889999999999998 764 467776 44 43222 223323343333333 222 2211234467778 45667
Q ss_pred EEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHh
Q 031651 82 RVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLL 151 (155)
Q Consensus 82 ~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~ 151 (155)
+.|+.-.++ +. ...++++.|.+ ++|.++.+..|...............+....++..|++||.
T Consensus 76 l~~t~~~~~----~~--~~v~~~~~~~~-~gT~ltl~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 76 IVYDHGSGP----PR--FRLTVTFEEQG-GKTRLTWRQVFPTAAERCEKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred EEEEeccCC----Cc--EEEEEEEEECC-CCEEEEEEEEcCCHHHHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 888874332 22 35788888876 67998888665321110000001234556677888888874
No 31
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.26 E-value=0.00015 Score=52.55 Aligned_cols=136 Identities=8% Similarity=-0.074 Sum_probs=77.4
Q ss_pred eEEEEEEecCChHhHhchhhccccccchhhhcC-C-cceEEEEcCCCCCceEEEE--EecCC-----CCCcceEEEEEEE
Q 031651 4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYD-T-VEEIEVVEGDGGVGTILHI--KFKPG-----TPGFAGYKEKFIE 74 (155)
Q Consensus 4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P-~-v~s~e~~eGdg~~GsvR~~--~~~~g-----~~~~~~~kErl~~ 74 (155)
+++.+..|+||+++||+++. |... +.+|.+ . +.. .+.+.+-.+|-.-.+ ++..+ .+....+.=++..
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~t--d~~~-~~~W~~p~~~~~-~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~ 76 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAFL--DPDA-LAKWLPPDGMTG-TVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLE 76 (146)
T ss_pred CEEEEEEECCCHHHHHHHHc--CHHH-HhhcCCCCCeEe-EEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEE
Confidence 46788889999999999998 7754 678774 3 322 112233223333223 22220 0111234456777
Q ss_pred EeCCCCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHh
Q 031651 75 IDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLL 151 (155)
Q Consensus 75 ~D~~~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~ 151 (155)
++ .++.+.|+..-.+... + .....++.+++.+ ++|.++++...-+.. .......+.-..++..|++||-
T Consensus 77 v~-p~~~i~~~~~~~~~~~-~-~~~~v~~~~~~~~-~~T~lt~~~~~~~~~----~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 77 LV-PNERIVYTDVFDDPSL-S-GEMTMTWTLSPVS-GGTDVTIVQSGIPDG----IPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred Ec-CCCEEEEEEEecCCCC-C-ceEEEEEEEEecC-CCEEEEEEEeCCCch----hhhhHHHHHHHHHHHHHHHHhc
Confidence 84 4556777653222211 2 2236788888876 568888887643211 1112346777777888888874
No 32
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.24 E-value=0.00028 Score=50.86 Aligned_cols=137 Identities=12% Similarity=-0.006 Sum_probs=77.1
Q ss_pred eEEEEEEecCChHhHhchhhccccccchhhhcCC--cceEEEEcCCCCCceEEEEEec-CCCCCcceEEEEEEEEeCCCC
Q 031651 4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT--VEEIEVVEGDGGVGTILHIKFK-PGTPGFAGYKEKFIEIDNKKR 80 (155)
Q Consensus 4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~--v~s~e~~eGdg~~GsvR~~~~~-~g~~~~~~~kErl~~~D~~~~ 80 (155)
+++.+..+++|+++||+++. |.. ++.+|+.. --.++..+.+-.+|..-.+.+. .+ +..-...=++.++| ..+
T Consensus 1 ~~~i~r~~~ap~e~Vw~a~t--dp~-~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~-g~~~~~~g~~~~~~-p~~ 75 (143)
T cd08900 1 TFTLERTYPAPPERVFAAWS--DPA-ARARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKG-GPEITVEARYHDIV-PDE 75 (143)
T ss_pred CEEEEEEeCCCHHHHHHHhc--CHH-HHHhcCCCCCCCceeeeEEecCCCCEEEEEEECCC-CCEEeeeEEEEEec-CCc
Confidence 35677889999999999998 764 47787732 1112223334334444334332 22 32223455677774 455
Q ss_pred eEEEEEE--eCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHh
Q 031651 81 VRVTDVV--EGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLL 151 (155)
Q Consensus 81 ~~~Y~il--eg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~ 151 (155)
.+.|+.. .++. +......++.+.+.+ |+|.++.+-.+-..++.. ......+.-..++..|++||.
T Consensus 76 ~l~~t~~~~~~~~---~~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~~--~~~~~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 76 RIVYTYTMHIGGT---LLSASLATVEFAPEG-GGTRLTLTEQGAFLDGDD--DPAGREQGTAALLDNLAAELE 142 (143)
T ss_pred eEEEEEeeccCCc---cccceEEEEEEEECC-CCEEEEEEEEEecccccc--hhhhHHHHHHHHHHHHHHHHh
Confidence 6666643 2222 111234688888875 568888876653222211 111235666677788888774
No 33
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.23 E-value=6.7e-05 Score=52.91 Aligned_cols=133 Identities=16% Similarity=0.050 Sum_probs=75.6
Q ss_pred eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651 4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV 83 (155)
Q Consensus 4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 83 (155)
+++.++.|+||+++||+++. |..+ ++.|.+... .+++-.+|..-.+..... ....+.=++.+++ .++.++
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~t--d~~~-~~~W~~~~~----~~~~~~~G~~~~~~~~~~--~~~~~~~~v~~~~-~~~~l~ 70 (136)
T cd08893 1 KFVYVTYIRATPEKVWQALT--DPEF-TRQYWGGTT----VESDWKVGSAFEYRRGDD--GTVDVEGEVLESD-PPRRLV 70 (136)
T ss_pred CeEEEEEecCCHHHHHHHHc--Cchh-hhheecccc----cccCCcCCCeEEEEeCCC--cccccceEEEEec-CCCeEE
Confidence 57899999999999999998 8755 789987611 123323344333443321 1113455677675 566677
Q ss_pred EEEEeCCcc-CcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHH
Q 031651 84 TDVVEGGYL-DVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYL 150 (155)
Q Consensus 84 Y~ileg~~~-~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l 150 (155)
|+...+... ..+-.....++.+.+.++ +|.++.+.+-.+.+. .......+....+++.|.+||
T Consensus 71 ~~~~~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~~~~---~~~~~~~~gw~~~l~~Lk~~~ 134 (136)
T cd08893 71 HTWRAVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFPPGS---PTLEGVSGGWPAILSSLKTLL 134 (136)
T ss_pred EEEecCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCCCCch---hHHHhhhcCHHHHHHHHHHHh
Confidence 776433221 001223467788888654 677666654432211 011123455666777777776
No 34
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.20 E-value=0.00014 Score=51.98 Aligned_cols=128 Identities=17% Similarity=0.223 Sum_probs=75.9
Q ss_pred eEEEEEEecCChHhHhchhhccccccchhhhcCC---cceEEEEcCCCCCceEEEEEec-CCCCCcceEEEEEEEEeCCC
Q 031651 4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDT---VEEIEVVEGDGGVGTILHIKFK-PGTPGFAGYKEKFIEIDNKK 79 (155)
Q Consensus 4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~---v~s~e~~eGdg~~GsvR~~~~~-~g~~~~~~~kErl~~~D~~~ 79 (155)
|++.++.++||+++||+++. |.. .+.+|++. ..... .+.|-.+|..-.+.+. .+.+....+.=++..+ +..
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~t--d~e-~~~~W~~~~~~~~~~~-~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei-~p~ 75 (133)
T cd08897 1 KITVETTVDAPIEKVWEAWT--TPE-HITKWNFASDDWHCPS-AENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEV-EPH 75 (133)
T ss_pred CEEEEEEeCCCHHHHHHHhC--CHH-HHhhCCCCCCCcccce-eeecCCcCCEEEEEEEcCCCCcccccceEEEEE-CCC
Confidence 57889999999999999998 764 57888643 11111 2233234444334332 2201111244566667 567
Q ss_pred CeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHh
Q 031651 80 RVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLL 151 (155)
Q Consensus 80 ~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~ 151 (155)
+.+.|+...+ ...++.+.+.+ ++|.++-+ +.+.+.. ......+.-..++..|++||-
T Consensus 76 ~~l~~~~~~~---------~~v~~~l~~~~-~gT~l~l~--~~~~~~~---~~~~~~~GW~~~l~~L~~~le 132 (133)
T cd08897 76 KLIEYTMEDG---------REVEVEFTEEG-DGTKVVET--FDAENEN---PVEMQRQGWQAILDNFKKYVE 132 (133)
T ss_pred CEEEEEcCCC---------CEEEEEEEECC-CCEEEEEE--ECCCCCC---cHHHHHHHHHHHHHHHHHHhh
Confidence 7888886321 14688888875 56887754 4433221 111245666778888888874
No 35
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.17 E-value=0.00038 Score=52.72 Aligned_cols=141 Identities=8% Similarity=-0.049 Sum_probs=81.8
Q ss_pred eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCC--CcceEEEEEEEEeCCCCe
Q 031651 4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTP--GFAGYKEKFIEIDNKKRV 81 (155)
Q Consensus 4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~--~~~~~kErl~~~D~~~~~ 81 (155)
.+..+.+|++||+++|+++. |... .|+|.|.+.++++++..+.--.+-.+.+...-+ .-..+..+-...+.++..
T Consensus 42 ~~k~~~~i~~s~e~v~~vi~--d~e~-~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~ 118 (195)
T cd08876 42 EFKAVAEVDASIEAFLALLR--DTES-YPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGS 118 (195)
T ss_pred EEEEEEEEeCCHHHHHHHHh--hhHh-HHHHHhhcceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCE
Confidence 45667789999999999998 8865 799999999999988653212222233322101 011222221222222344
Q ss_pred EEEEEEeCCc---cCc---CceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHH
Q 031651 82 RVTDVVEGGY---LDV---GFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNY 149 (155)
Q Consensus 82 ~~Y~ileg~~---~~~---~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~ 149 (155)
+...+...+. ... ....+.+...++|.++++|.++....+++.+. .|... .....+.++++++.+.
T Consensus 119 ~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~--iP~~lv~~~~~~~~~~~l~~l~~~ 193 (195)
T cd08876 119 VTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS--IPGWLANAFAKDAPYNTLENLRKQ 193 (195)
T ss_pred EEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC--CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444433321 000 14567778888998888899999999998754 33322 1234444555555543
No 36
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.17 E-value=0.0001 Score=53.48 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=73.4
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhcC-C-cceEEEEcCCCCCceEEEEEe-cCCCCCcceEEEEEEEEeCCCCe
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYD-T-VEEIEVVEGDGGVGTILHIKF-KPGTPGFAGYKEKFIEIDNKKRV 81 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P-~-v~s~e~~eGdg~~GsvR~~~~-~~g~~~~~~~kErl~~~D~~~~~ 81 (155)
++.+..++||+++||+++- |.. ++.+|++ . .. +...+.+-.+|..=.+.+ .++ |..-.+.=++..+|+. +.
T Consensus 2 l~i~r~i~a~~e~Vw~a~t--~pe-~~~~W~~p~~~~-~~~~~~d~~~GG~~~~~~~~~~-g~~~~~~g~v~~i~p~-~~ 75 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWT--EPE-LLKQWFCPKPWT-TEVAELDLRPGGAFRTVMRGPD-GEEFPNPGCFLEVVPG-ER 75 (146)
T ss_pred eEEEEEeCCCHHHHHHHcC--CHH-HHhccCCCCCcc-ceEEEEEeecCcEEEEEEECCC-CCEecceEEEEEEeCC-CE
Confidence 5678889999999999998 664 4667764 2 22 111122212233323333 222 3222345678888554 45
Q ss_pred EEEE--EEeC-CccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHh
Q 031651 82 RVTD--VVEG-GYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYLL 151 (155)
Q Consensus 82 ~~Y~--ileg-~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~ 151 (155)
+.|+ +-++ ++...+. -..++++++.+ ++|.++.+..+........-......+.-..++..|++||.
T Consensus 76 l~~t~~~~~~~~~~~~~~--~~v~~~~~~~~-~gT~Ltl~~~~~~~~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 76 LVFTDALTPGWRPAEKPF--MTAIITFEDEG-GGTRYTARARHWTEADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEEEEeecCCcCCCCCCc--EEEEEEEEecC-CcEEEEEEEEeCCHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 5555 3222 1111122 35678888865 57888876554321110000001124667778888888875
No 37
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.04 E-value=0.0003 Score=51.18 Aligned_cols=132 Identities=11% Similarity=-0.024 Sum_probs=72.4
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhc-CCc-------ceEEEEcCCCCC-ceEEEEEecCCCCCcceEEEEEEEE
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEY-DTV-------EEIEVVEGDGGV-GTILHIKFKPGTPGFAGYKEKFIEI 75 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~-P~v-------~s~e~~eGdg~~-GsvR~~~~~~g~~~~~~~kErl~~~ 75 (155)
++++++|+||+++||+++. | .+.+|. |.- ..|++ +- .+ |..+ +...+| . ....=++.++
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t--~---~l~~W~~p~~~~~~~~~~~~~~-d~--~~GG~~~-~~~~~g--~-~~~~g~v~~v 69 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFT--E---GFGAWWPPEYHFVFSPGAEVVF-EP--RAGGRWY-EIGEDG--T-ECEWGTVLAW 69 (149)
T ss_pred eEEEEEecCCHHHHHHHHH--h---chhhccCCCcccccCCCccEEE-cc--cCCcEEE-EecCCC--c-EeceEEEEEE
Confidence 6789999999999999997 6 255665 331 33442 11 23 3333 222222 1 2234567777
Q ss_pred eCCCCeEEEEEE-eC--CccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCc---ccCCchhhHHHHHHHHHHHHHH
Q 031651 76 DNKKRVRVTDVV-EG--GYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEA---AANASFVSIDTVAKIAEISKNY 149 (155)
Q Consensus 76 D~~~~~~~Y~il-eg--~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~---~~~~~~~~~~~~~~~~k~~e~~ 149 (155)
+ ..+.++|+-. .. .....+.+ ..++++++.++++|.++.+-........ .........+.-..++..|++|
T Consensus 70 ~-p~~~l~~tw~~~~~~~~~~~~~t--~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~ 146 (149)
T cd08891 70 E-PPSRLVFTWQINADWRPDPDKAS--EVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAA 146 (149)
T ss_pred c-CCCEEEEEeccCCCcCcCCCCce--EEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHH
Confidence 4 4556666653 11 11111122 5788888876457988887776543221 0000111234555677777777
Q ss_pred Hh
Q 031651 150 LL 151 (155)
Q Consensus 150 l~ 151 (155)
|-
T Consensus 147 l~ 148 (149)
T cd08891 147 AE 148 (149)
T ss_pred hc
Confidence 63
No 38
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.91 E-value=0.00026 Score=50.78 Aligned_cols=130 Identities=15% Similarity=0.105 Sum_probs=73.8
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEE
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVT 84 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y 84 (155)
++.++.++||+++||+++. |.. .+.+|.+.-.+.++..| |.+ .+.+... ++ .+.=++..+ +..+.+.|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t--~p~-~l~~W~~~~~~~~~~~G----g~~-~~~~~~~-~~--~~~g~~~~~-~p~~~l~~ 69 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFV--DPE-ITTKFWFTGSSGRLEEG----KTV-TWDWEMY-GA--SVPVNVLEI-EPNKRIVI 69 (136)
T ss_pred eeEEEEecCCHHHHHHHhc--CHH-HhccccccCCCccccCC----CEE-EEEEEcc-CC--ceEEEEEEE-cCCCEEEE
Confidence 5788999999999999998 664 46776543223333222 333 3555432 21 234466777 55677888
Q ss_pred EEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCccc-CCchhhHHHHHHHHHHHHHHHhh
Q 031651 85 DVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAA-NASFVSIDTVAKIAEISKNYLLN 152 (155)
Q Consensus 85 ~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~-~~~~~~~~~~~~~~k~~e~~l~~ 152 (155)
+.-.++ +.+ ..++++.+.++|+|.++-+-..-+....+. .......+.-..++..|++||..
T Consensus 70 ~w~~~~----~~s--~v~~~l~~~~~ggT~ltl~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~le~ 132 (136)
T cd08901 70 EWGDPG----EPT--TVEWTFEELDDGRTFVTITESGFPGTDDEGLKQALGSTEGWTLVLAGLKAYLEH 132 (136)
T ss_pred EecCCC----CCE--EEEEEEEECCCCcEEEEEEECCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 764322 233 468888887656788776644332211000 00001124455666777777753
No 39
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.0012 Score=48.41 Aligned_cols=138 Identities=12% Similarity=0.094 Sum_probs=72.5
Q ss_pred cceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCe
Q 031651 2 KGQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRV 81 (155)
Q Consensus 2 ~~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~ 81 (155)
...+..+..|++|+++||+++. |. .++.+|+. -..++ .+.--+.+....+....+ +.-...-++.++ ..++.
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~T--dp-e~l~~W~~-~~~~~-~d~r~gg~~~~~~~~~~g--~~~~~~~~~~~v-~p~~r 78 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALT--DP-ELLARWFM-PGGAE-FDARTGGGERVRFRGPDG--PVHSFEGEYLEV-VPPER 78 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhc--CH-HHHHhhcC-CCCCc-cceecCCceEEeeecCCC--CeeecceEEEEE-cCCcE
Confidence 3467888889999999999998 66 46889886 22111 011101122333444333 222455677777 44555
Q ss_pred EEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccC----CchhhHHHHHHHHHHHHHHHh
Q 031651 82 RVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAAN----ASFVSIDTVAKIAEISKNYLL 151 (155)
Q Consensus 82 ~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~----~~~~~~~~~~~~~k~~e~~l~ 151 (155)
|.|+-.-.+.-. +...-..++++++..+|+ +++..........+. ......+.-..++..++++|.
T Consensus 79 Iv~tw~~~~~~~-~~~~~~v~~~l~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 79 IVFTWDFDEDGE-PFLKSLVTITLTPEDDGG---TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred EEEEeccCCCCC-cccCceEEEEEEEecCCC---cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 555554433211 222236688888876653 222222222211011 111125667777888877764
No 40
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.68 E-value=0.0031 Score=44.69 Aligned_cols=99 Identities=18% Similarity=0.172 Sum_probs=58.3
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEE
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVT 84 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y 84 (155)
++.+..++||+++||+++- |.. .+.+|+....+.+...| |..+ +.+| .+.=++.+++ .++.++|
T Consensus 2 i~~~r~i~ap~e~Vw~A~T--~~e-~l~~W~~~~~~~d~~~G----G~~~---~~~g-----~~~g~~~~i~-p~~~l~~ 65 (126)
T cd08892 2 ISLTETFQVPAEELYEALT--DEE-RVQAFTRSPAKVDAKVG----GKFS---LFGG-----NITGEFVELV-PGKKIVQ 65 (126)
T ss_pred eEEEEEECCCHHHHHHHHC--CHH-HHHhhcCCCceecCCCC----CEEE---EeCC-----ceEEEEEEEc-CCCEEEE
Confidence 6778899999999999998 664 47788754444443222 3443 3333 2444677775 4555555
Q ss_pred EEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEE
Q 031651 85 DVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYE 122 (155)
Q Consensus 85 ~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~ 122 (155)
+---.+.-..+. -..++.+.+. +++|.++.+-...
T Consensus 66 ~w~~~~~~~~~~--s~v~~~l~~~-~~gT~ltl~~~g~ 100 (126)
T cd08892 66 KWRFKSWPEGHY--STVTLTFTEK-DDETELKLTQTGV 100 (126)
T ss_pred EEEcCCCCCCCc--EEEEEEEEEC-CCCEEEEEEEECC
Confidence 543222110022 2567778886 4568777665544
No 41
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=97.65 E-value=0.00035 Score=51.30 Aligned_cols=111 Identities=13% Similarity=0.200 Sum_probs=80.1
Q ss_pred eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEE
Q 031651 4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRV 83 (155)
Q Consensus 4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~ 83 (155)
+++++.-++-+|+++|+++. |-.. .|+.+|.-...++.+.++ ...+-.++.+-. +--++..=|.. +++..++|.
T Consensus 3 ~~~~s~lv~y~a~~mF~LV~--dV~~-YP~FlP~C~~s~v~~~~~-~~l~A~l~V~~k-~i~e~F~Trv~-~~~~~~~I~ 76 (146)
T COG2867 3 QIERTALVPYSASQMFDLVN--DVES-YPEFLPWCSASRVLERNE-RELIAELDVGFK-GIRETFTTRVT-LKPTARSID 76 (146)
T ss_pred eeEeeeeccCCHHHHHHHHH--HHHh-CchhccccccceEeccCc-ceeEEEEEEEhh-heeeeeeeeee-ecCchhhhh
Confidence 57788889999999999998 8765 799999966667677763 234555555433 21123344444 455555777
Q ss_pred EEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcC
Q 031651 84 TDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELRE 125 (155)
Q Consensus 84 Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~ 125 (155)
-++++|+ ++...++.++.|.++++|.|+..++|+...
T Consensus 77 ~~l~~GP-----Fk~L~~~W~F~pl~~~~ckV~f~ldfeF~s 113 (146)
T COG2867 77 MKLIDGP-----FKYLKGGWQFTPLSEDACKVEFFLDFEFKS 113 (146)
T ss_pred hhhhcCC-----hhhhcCceEEEECCCCceEEEEEEEeeehh
Confidence 7777764 555789999999877899999999999864
No 42
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.57 E-value=0.0045 Score=42.78 Aligned_cols=121 Identities=16% Similarity=0.135 Sum_probs=66.8
Q ss_pred cCChHhHhchhhccccccchhhhcCC-cceEEEEcCCCCCc-eEEEEEecCCCCCcceEEEEEEEEeCCCCeEEEEEEeC
Q 031651 12 NVPAGQAWELYGTIKLVKLVEKEYDT-VEEIEVVEGDGGVG-TILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTDVVEG 89 (155)
Q Consensus 12 ~apa~kvW~~~~~~d~~~~lp~~~P~-v~s~e~~eGdg~~G-svR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~ileg 89 (155)
+||+++||+++. +.. .+.+|.+. ....+. .+| +.+... .+ ++.-...=++.++++ ++.+.|+.--+
T Consensus 1 ~ap~e~Vw~a~t--~~~-~~~~W~~~~~~~~~~-----~~Gg~~~~~~-~~--g~~~~~~~~v~~~~p-~~~i~~~~~~~ 68 (124)
T PF08327_consen 1 DAPPERVWEALT--DPE-GLAQWFTTSEAEMDF-----RPGGSFRFMD-PD--GGEFGFDGTVLEVEP-PERIVFTWRMP 68 (124)
T ss_dssp SSSHHHHHHHHH--SHH-HHHHHSEEEEEEEEC-----STTEEEEEEE-TT--SEEEEEEEEEEEEET-TTEEEEEEEEE
T ss_pred CcCHHHHHHHHC--CHh-HHhhccCCCcceeee-----ecCCEEEEEe-cC--CCCceeeEEEEEEeC-CEEEEEEEEcc
Confidence 689999999998 664 47888322 333332 233 444412 32 222233435888855 44588886433
Q ss_pred CccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHH
Q 031651 90 GYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNYL 150 (155)
Q Consensus 90 ~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l 150 (155)
+.. +-.....++.|.+ .+++|.++-+.+=.+... ..+ ......-..++..|.+||
T Consensus 69 ~~~--~~~~~~v~~~~~~-~~~~T~l~~~~~~~~~~~--~~~-~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 69 DDP--DGPESRVTFEFEE-EGGGTRLTLTHSGFPDDD--EEE-EGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp TSS--SCEEEEEEEEEEE-ETTEEEEEEEEEEEHSHH--HHH-HCHHHHHHHHHHHHHHHH
T ss_pred CCC--CCCceEEEEEEEE-cCCcEEEEEEEEcCCccH--HHH-HHHHHHHHHHHHHHHHHh
Confidence 321 1223477888888 556788776652221111 001 014566667777777776
No 43
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=97.46 E-value=0.012 Score=43.17 Aligned_cols=122 Identities=15% Similarity=0.157 Sum_probs=72.9
Q ss_pred EEEEEEecCC-------hHhHhchhhccccccchhh-hcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEe
Q 031651 5 LSHELEVNVP-------AGQAWELYGTIKLVKLVEK-EYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEID 76 (155)
Q Consensus 5 ~~~~i~i~ap-------a~kvW~~~~~~d~~~~lp~-~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D 76 (155)
+++.++||-| .+++|.-+- .-. . -|. ..|++.+|++++.++ .--.|.++|+.. .++|++..
T Consensus 2 ~~~tvpIN~p~~~p~LTr~QlW~GL~-~ka-r-~p~~Fvp~i~~c~Vl~e~~-~~l~Rel~f~~~-----~v~e~vt~-- 70 (141)
T cd08863 2 FEHTVPINDPGNIPTLTRAQLWRGLV-LRA-R-EPQLFVPGLDRCEVLSESG-TVLERELTFGPA-----KIRETVTL-- 70 (141)
T ss_pred ccEEEecCCCCCCCccCHHHHHhHHH-hhh-C-CchhcccccceEEEEecCC-CEEEEEEEECCc-----eEEEEEEe--
Confidence 3566666654 468998774 112 1 233 457899999998764 246799999875 79999885
Q ss_pred CCCCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCc-ccCCchhhHHHHHHHHHHHH
Q 031651 77 NKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEA-AANASFVSIDTVAKIAEISK 147 (155)
Q Consensus 77 ~~~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~-~~~~~~~~~~~~~~~~k~~e 147 (155)
.....+.|.+-.++. +.++.++...+|. .-.++.|+..... ..++...+.+...++++.-+
T Consensus 71 ~~~~~v~f~~~~~g~--------~l~~~iee~~~g~--L~lrf~ye~~~p~~~~~e~~~~~~~~~~a~~~a~ 132 (141)
T cd08863 71 EPPSRVHFLQADAGG--------TLTNTIEEPEDGA--LYLRFVYETTLPEVAEEEAKAYQEIVKQAYKEAD 132 (141)
T ss_pred cCCcEEEEEecCCCC--------eEEEEeccCCCCc--EEEEEEEEecCCCcCchHHHHHHHHHHHHHHHHH
Confidence 566778888765221 2355554444443 3445566654322 22333335566666665544
No 44
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.26 E-value=0.057 Score=42.87 Aligned_cols=143 Identities=13% Similarity=-0.004 Sum_probs=85.9
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCC-CCceEEEEEecCC-CCCcce-EEEEEEE--EeCCC
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDG-GVGTILHIKFKPG-TPGFAG-YKEKFIE--IDNKK 79 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg-~~GsvR~~~~~~g-~~~~~~-~kErl~~--~D~~~ 79 (155)
+..+.++++|++++|+++. |..+ .++|.++..++++++.-+ ..+-++ +.+..- .-..+. +.-+-.. .+..+
T Consensus 79 fk~e~~vd~s~~~v~dlL~--D~~~-R~~WD~~~~e~evI~~id~d~~iyy-~~~p~PwPvk~RDfV~~~s~~~~~~~~~ 154 (235)
T cd08873 79 FCVELKVQTCASDAFDLLS--DPFK-RPEWDPHGRSCEEVKRVGEDDGIYH-TTMPSLTSEKPNDFVLLVSRRKPATDGD 154 (235)
T ss_pred EEEEEEecCCHHHHHHHHh--Ccch-hhhhhhcccEEEEEEEeCCCcEEEE-EEcCCCCCCCCceEEEEEEEEeccCCCC
Confidence 4567779999999999999 8866 799999999999987432 223233 333221 011122 2222221 22222
Q ss_pred -CeEEEEEEe-------CCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCC-cccCCchhhHHHHHHHHHHHHHHH
Q 031651 80 -RVRVTDVVE-------GGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE-AAANASFVSIDTVAKIAEISKNYL 150 (155)
Q Consensus 80 -~~~~Y~ile-------g~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~-~~~~~~~~~~~~~~~~~k~~e~~l 150 (155)
..+..+-+. .+.. ....+.+-..+.|.++|+|.++.....+|.-- .....--.+-..+...|+..++||
T Consensus 155 ~~~I~~~SV~h~~~Pp~kgyV--R~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (235)
T cd08873 155 PYKVAFRSVTLPRVPQTPGYS--RTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYVTCNLAGLSALYCRTFHCCEQFL 232 (235)
T ss_pred eEEEEEeeeecccCCCCCCeE--EEEEEeeeEEEEECCCCcEEEEEEEEcCCCccceeeecchhhhHHHHHHHHHHHHHh
Confidence 233333333 1111 35677888889999888899998888777532 111121134566777888888988
Q ss_pred hhC
Q 031651 151 LNN 153 (155)
Q Consensus 151 ~~~ 153 (155)
..|
T Consensus 233 ~~~ 235 (235)
T cd08873 233 VTN 235 (235)
T ss_pred ccC
Confidence 765
No 45
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.21 E-value=0.016 Score=41.60 Aligned_cols=122 Identities=13% Similarity=0.132 Sum_probs=62.5
Q ss_pred ecCChHhHhchhhccccccchhhh-cCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEEEEEeC
Q 031651 11 VNVPAGQAWELYGTIKLVKLVEKE-YDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTDVVEG 89 (155)
Q Consensus 11 i~apa~kvW~~~~~~d~~~~lp~~-~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~ileg 89 (155)
++||+++||+++- |. .++.+| .+....+++..| |..+.+ .+ .+.=+...+|+.+ .+.|+---.
T Consensus 1 f~ap~e~Vw~A~T--dp-~~l~~w~~~~~~~~d~~~G----G~f~~~---~~-----~~~G~~~ev~pp~-rlv~tw~~~ 64 (132)
T PTZ00220 1 FYVPPEVLYNAFL--DA-YTLTRLSLGSPAEMDAKVG----GKFSLF---NG-----SVEGEFTELEKPK-KIVQKWRFR 64 (132)
T ss_pred CCCCHHHHHHHHc--CH-HHHHHHhcCCCccccCCcC----CEEEEe---cC-----ceEEEEEEEcCCC-EEEEEEecC
Confidence 4799999999997 66 457777 432222222222 333332 22 2334667775544 444443212
Q ss_pred CccCcCceEEEEEEEEEeeCCCceEEEEEEE-EEEcCCccc-CCchhhHHHHHH-HHHHHHHHH
Q 031651 90 GYLDVGFTLFRVIFEIIEKGSDSCIIKSTIE-YELREEAAA-NASFVSIDTVAK-IAEISKNYL 150 (155)
Q Consensus 90 ~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~-y~~~~~~~~-~~~~~~~~~~~~-~~k~~e~~l 150 (155)
+.....++ ..|+.+++.++|+|.++-+-. +......+. .......+.-.. ++..|++||
T Consensus 65 ~~~~~~~s--~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 65 DWEEDVYS--KVTIEFRAVEEDHTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNFLDRFEKIL 126 (132)
T ss_pred CCCCCCce--EEEEEEEeCCCCcEEEEEEEecCccccccCCCchhhHHHhChHHHHHHHHHHHh
Confidence 11111233 578888887666788877766 322111100 001112344445 577787776
No 46
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=97.19 E-value=0.038 Score=40.86 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=41.3
Q ss_pred EEEEEEecCChH--------hHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEe
Q 031651 5 LSHELEVNVPAG--------QAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEID 76 (155)
Q Consensus 5 ~~~~i~i~apa~--------kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D 76 (155)
+++.++||-|.+ ++|+-+. .-..--..+.|++.+|++++.. +..-.|.++|+.. .++|++...
T Consensus 2 ~~htvpIN~p~~~~~~LTr~QlW~GL~--~kar~p~~Fvp~i~~c~Vl~e~-~~~~~R~v~fg~~-----~v~E~v~~~- 72 (149)
T PF08982_consen 2 FEHTVPINPPGASLPVLTREQLWRGLV--LKARNPQLFVPGIDSCEVLSES-DTVLTREVTFGGA-----TVRERVTLY- 72 (149)
T ss_dssp EEEEEE------------HHHHHHHHH--HHHH-GGGT-TT--EEEEEEE--SSEEEEEEEETTE-----EEEEEEEEE-
T ss_pred ccEEEecCCCcccCCccCHHHHHHHHH--HHHhChhhCccccCeEEEEecC-CCeEEEEEEECCc-----EEEEEEEEe-
Confidence 566777766554 7998875 2222122356889999998766 4578999999443 799998853
Q ss_pred CCCCeEEE
Q 031651 77 NKKRVRVT 84 (155)
Q Consensus 77 ~~~~~~~Y 84 (155)
..+.+.|
T Consensus 73 -~~~~V~f 79 (149)
T PF08982_consen 73 -PPERVDF 79 (149)
T ss_dssp -TTTEEEE
T ss_pred -CCcEEEE
Confidence 4557777
No 47
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=96.21 E-value=0.23 Score=38.49 Aligned_cols=117 Identities=8% Similarity=0.002 Sum_probs=69.4
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCC-CCceEEEEEec-C--CCCCcce-EEEEEEEEeCCC
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDG-GVGTILHIKFK-P--GTPGFAG-YKEKFIEIDNKK 79 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg-~~GsvR~~~~~-~--g~~~~~~-~kErl~~~D~~~ 79 (155)
+..+.++++|++++|+++. |..+ .++|.++++++++++.-+ ...-++ +.+. + ...+.+. +.-+ ....+.+
T Consensus 47 ~~ge~~v~as~~~v~~ll~--D~~~-r~~Wd~~~~~~~vl~~~~~d~~i~y-~~~~~Pwp~~~~~RDfV~l~-~~~~~~~ 121 (205)
T cd08874 47 FLGAGVIKAPLATVWKAVK--DPRT-RFLYDTMIKTARIHKTFTEDICLVY-LVHETPLCLLKQPRDFCCLQ-VEAKEGE 121 (205)
T ss_pred EEEEEEEcCCHHHHHHHHh--Ccch-hhhhHHhhhheeeeeecCCCeEEEE-EEecCCCCCCCCCCeEEEEE-EEEECCC
Confidence 3456789999999999999 8865 789999999999987543 222233 3322 1 1002222 2222 2233333
Q ss_pred C-eEEEEEEeCCcc--C----cCceEEEEEEEEEee---CCCceEEEEEEEEEEcCC
Q 031651 80 R-VRVTDVVEGGYL--D----VGFTLFRVIFEIIEK---GSDSCIIKSTIEYELREE 126 (155)
Q Consensus 80 ~-~~~Y~ileg~~~--~----~~~~~y~~ti~v~~~---~~g~s~v~W~~~y~~~~~ 126 (155)
. .+.-+-+.-+.. . .....+.+-..++|. ++|.|.++.....+|.++
T Consensus 122 ~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg 178 (205)
T cd08874 122 LSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGP 178 (205)
T ss_pred cEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCC
Confidence 3 332222222111 0 024456667778887 667899999999998854
No 48
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=95.59 E-value=0.91 Score=36.13 Aligned_cols=143 Identities=14% Similarity=-0.018 Sum_probs=77.5
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCC--CcceEEEE-EEEEeCCCC-
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTP--GFAGYKEK-FIEIDNKKR- 80 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~--~~~~~kEr-l~~~D~~~~- 80 (155)
+..+.++++|++++++++. |..+ .++|.+++.++++++--+.--.+..++..+-.+ ..+.+.=+ -..-+.++.
T Consensus 83 fK~e~~vd~s~e~v~~lL~--D~~~-r~~Wd~~~~e~~vIe~id~~~~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~ 159 (240)
T cd08913 83 FKVEMVVHVDAAQAFLLLS--DLRR-RPEWDKHYRSCELVQQVDEDDAIYHVTSPSLSGHGKPQDFVILASRRKPCDNGD 159 (240)
T ss_pred EEEEEEEcCCHHHHHHHHh--Chhh-hhhhHhhccEEEEEEecCCCcEEEEEecCCCCCCCCCCeEEEEEEEEeccCCCc
Confidence 4566789999999999998 8866 799999999999986642111244444332101 11222111 111222222
Q ss_pred --eEEEEEEeCCcc--Cc---CceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch----hhHHHHHHHHHHHHHH
Q 031651 81 --VRVTDVVEGGYL--DV---GFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF----VSIDTVAKIAEISKNY 149 (155)
Q Consensus 81 --~~~Y~ileg~~~--~~---~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~----~~~~~~~~~~k~~e~~ 149 (155)
.+..+.+.=+-. .. ...++.+-+.+.|.++|.|.+.+...-+| + ..|... .....+...+..-..+
T Consensus 160 ~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP--G-~LP~~~~N~~~~~~p~~~~~~~~~~~ 236 (240)
T cd08913 160 PYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP--G-VLPYISTDIAGLSSEFYSTFSACSQF 236 (240)
T ss_pred cEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC--c-cccHHHhhhhhhccchhHHHHHHHHH
Confidence 132333221111 00 24456677778888888899887665554 2 223111 1223444555666666
Q ss_pred HhhC
Q 031651 150 LLNN 153 (155)
Q Consensus 150 l~~~ 153 (155)
|.+|
T Consensus 237 ~~~~ 240 (240)
T cd08913 237 LLDN 240 (240)
T ss_pred hhcC
Confidence 6543
No 49
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=95.20 E-value=0.87 Score=33.59 Aligned_cols=108 Identities=19% Similarity=0.281 Sum_probs=60.6
Q ss_pred EEEEEecCChHhHhchhhccccccchhhh---cCC----cceEEEEcCCCCCceEEEE-EecC-CCC--------CcceE
Q 031651 6 SHELEVNVPAGQAWELYGTIKLVKLVEKE---YDT----VEEIEVVEGDGGVGTILHI-KFKP-GTP--------GFAGY 68 (155)
Q Consensus 6 ~~~i~i~apa~kvW~~~~~~d~~~~lp~~---~P~----v~s~e~~eGdg~~GsvR~~-~~~~-g~~--------~~~~~ 68 (155)
++++++++|+++||+++. |..- +..- +.. +.+++ .+|+| -+++.- .+.. .++ +.-.+
T Consensus 2 ~~~~~~~~~~~~v~~~~~--d~~y-~~~r~~~~g~~~~~~~~~~-~~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v 75 (159)
T PF10698_consen 2 EHSVEYPAPVERVWAAFT--DEDY-WEARCAALGADNAEVESFE-VDGDG--VRVTVRQTVPADKLPSAARKFVGGDLRV 75 (159)
T ss_pred eEEEEcCCCHHHHHHHHc--CHHH-HHHHHHHcCCCCceEEEEE-EcCCe--EEEEEEEecChhhCCHHHHHhcCCCeEE
Confidence 578899999999999998 5422 2221 222 34444 23332 111111 1221 111 11122
Q ss_pred E--EEEEEEeCCCCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEc
Q 031651 69 K--EKFIEIDNKKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELR 124 (155)
Q Consensus 69 k--Erl~~~D~~~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~ 124 (155)
+ |+-...++..++.+|++--.+. |. +.++++.+.|.+ ++|.+.++++....
T Consensus 76 ~~~e~w~~~~~g~~~g~~~~~~~G~---P~-~~~G~~~L~~~~-~gt~~~~~g~v~v~ 128 (159)
T PF10698_consen 76 TRTETWTPLDDGRRTGTFTVSIPGA---PV-SISGTMRLRPDG-GGTRLTVEGEVKVK 128 (159)
T ss_pred EEEEEEecCCCCeEEEEEEEEecCc---eE-EEEEEEEEecCC-CCEEEEEEEEEEEE
Confidence 2 2232336677777777643222 33 368999999954 47999999988865
No 50
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=95.02 E-value=1.2 Score=34.44 Aligned_cols=141 Identities=11% Similarity=0.057 Sum_probs=73.9
Q ss_pred EEEEEEecCChHhHh-chhhccccccchhhhcCCcceEEEEcCCCCCce-EEEEEecC-C--CCCcceEEEEEEEEeCCC
Q 031651 5 LSHELEVNVPAGQAW-ELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGT-ILHIKFKP-G--TPGFAGYKEKFIEIDNKK 79 (155)
Q Consensus 5 ~~~~i~i~apa~kvW-~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~Gs-vR~~~~~~-g--~~~~~~~kErl~~~D~~~ 79 (155)
...+.++++|+++++ .++- |..+ .++|.+.+.++++++--+..=. ++.+..+. + ..+-..+.-|....+..+
T Consensus 51 ~k~e~~i~~~~~~l~~~l~~--d~e~-~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~ 127 (209)
T cd08905 51 FRLEVVVDQPLDNLYSELVD--RMEQ-MGEWNPNVKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGST 127 (209)
T ss_pred EEEEEEecCCHHHHHHHHHh--chhh-hceecccchHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCc
Confidence 456778999999999 6654 6654 7999999888887755321111 22222211 0 000112222322233333
Q ss_pred CeEEEEEEeCCccC--c---CceEEEEEEEEEeeCC--CceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHH
Q 031651 80 RVRVTDVVEGGYLD--V---GFTLFRVIFEIIEKGS--DSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNY 149 (155)
Q Consensus 80 ~~~~Y~ileg~~~~--~---~~~~y~~ti~v~~~~~--g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~ 149 (155)
..+.....+-+-+. . ....+.+-..+.|.++ +.|.++|.+..+|++.- |... .+.+.....++.|..+
T Consensus 128 ~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~i--P~~lvN~~~~~~~~~~~~~Lr~~ 205 (209)
T cd08905 128 CVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWL--PKSIINQVLSQTQVDFANHLRQR 205 (209)
T ss_pred EEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCC--CHHHHHHHhHHhHHHHHHHHHHH
Confidence 22211111111110 0 2344556667788754 68999999999998774 3211 1234444455555554
Q ss_pred H
Q 031651 150 L 150 (155)
Q Consensus 150 l 150 (155)
+
T Consensus 206 ~ 206 (209)
T cd08905 206 M 206 (209)
T ss_pred H
Confidence 4
No 51
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=94.79 E-value=1.4 Score=35.02 Aligned_cols=117 Identities=16% Similarity=-0.005 Sum_probs=66.5
Q ss_pred eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCC-CCCcceEEEEEEEE-eC-CC-
Q 031651 4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPG-TPGFAGYKEKFIEI-DN-KK- 79 (155)
Q Consensus 4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g-~~~~~~~kErl~~~-D~-~~- 79 (155)
.+..+.++++|++++++++. |..+ .++|.++..++++++.-+.---+..+.-.+= .-+.+.+.=+..-. .. .+
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~--D~~~-r~~Wd~~~~e~~vI~qld~~~~vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg~ 155 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLS--DFTK-RPLWDPHFLSCEVIDWVSEDDQIYHITCPIVNNDKPKDLVVLVSRRKPLKDGN 155 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHh--Chhh-hchhHHhhceEEEEEEeCCCcCEEEEecCCCCCCCCceEEEEEEEEecCCCCC
Confidence 45667789999999999999 9866 7999999999998866321112555543221 01112221111111 12 22
Q ss_pred -CeEEEEEEeCC--ccCc---CceEEEEEEEEEeeCCCceEEEEEEEEEE
Q 031651 80 -RVRVTDVVEGG--YLDV---GFTLFRVIFEIIEKGSDSCIIKSTIEYEL 123 (155)
Q Consensus 80 -~~~~Y~ileg~--~~~~---~~~~y~~ti~v~~~~~g~s~v~W~~~y~~ 123 (155)
..+.-.-+..+ +... ....+..-..+.|.++++|.++....-+|
T Consensus 156 ~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~dP 205 (236)
T cd08914 156 TYVVAVKSVILPSVPPSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQISA 205 (236)
T ss_pred EEEEEEeecccccCCCCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcCC
Confidence 22222222221 1000 23442333377888888899998888877
No 52
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=94.55 E-value=1.3 Score=32.44 Aligned_cols=120 Identities=18% Similarity=0.060 Sum_probs=67.7
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCC-Cc-ceEEEEEEEEeCCCC-e
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTP-GF-AGYKEKFIEIDNKKR-V 81 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~-~~-~~~kErl~~~D~~~~-~ 81 (155)
+..+.++++|++++|+++. |.. ..++|-|.+.++++++-....-.+....+....+ .. ..+--+-...+.++. .
T Consensus 41 ~k~~~~i~~~~~~v~~~l~--d~~-~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~~ 117 (193)
T cd00177 41 LKAEGVIPASPEQVFELLM--DID-LRKKWDKNFEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTYV 117 (193)
T ss_pred EEEEEEECCCHHHHHHHHh--CCc-hhhchhhcceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeEE
Confidence 4567789999999999998 754 4688998899999887653223444444432211 01 112222222233222 1
Q ss_pred EEEEEEeCC--ccC-c--CceEEEEEEEEEeeCCCceEEEEEEEEEEcCCc
Q 031651 82 RVTDVVEGG--YLD-V--GFTLFRVIFEIIEKGSDSCIIKSTIEYELREEA 127 (155)
Q Consensus 82 ~~Y~ileg~--~~~-~--~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~ 127 (155)
+...=++.+ +.. . ....+.+.+.+.|.++++|.+++....++.+..
T Consensus 118 ~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~i 168 (193)
T cd00177 118 IVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSI 168 (193)
T ss_pred EEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCc
Confidence 222222221 100 0 112223446678887788999999999988653
No 53
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=93.25 E-value=3 Score=32.10 Aligned_cols=141 Identities=15% Similarity=0.050 Sum_probs=72.0
Q ss_pred EEEEEEecCChHhHhchhhcccccc-chhhhcCCcceEEEEcCCC-CCceEEEEEecCC----CCCcceEEE-EEEEEeC
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVK-LVEKEYDTVEEIEVVEGDG-GVGTILHIKFKPG----TPGFAGYKE-KFIEIDN 77 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~-~lp~~~P~v~s~e~~eGdg-~~GsvR~~~~~~g----~~~~~~~kE-rl~~~D~ 77 (155)
+..+..++++++++++.+. |..+ .-++|-+.+.+++++|--+ ...-++. ..+.. ..+-..+-- .....++
T Consensus 48 ~k~e~~i~~s~~~~~~~l~--d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d 124 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLK--PAAGGLRVKWDQNVKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYED 124 (208)
T ss_pred EEEEEEecCCHHHHHHHHH--hccchhhhhhhhccccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCC
Confidence 5567789999999999986 6543 2379999988888886642 2111222 22211 010012221 2222333
Q ss_pred CCCeEEEEEEeCCcc--CcCce---E--EEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHH
Q 031651 78 KKRVRVTDVVEGGYL--DVGFT---L--FRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISK 147 (155)
Q Consensus 78 ~~~~~~Y~ileg~~~--~~~~~---~--y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e 147 (155)
....+.+...+-+-. ...|- . +-..++..|.++++|.++|.+..+|++.- |... ...+.....++.|.
T Consensus 125 ~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~i--P~~lvn~~~~~~~~~~~~~Lr 202 (208)
T cd08903 125 GTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYL--PQTVVDSFFPASMAEFYNNLT 202 (208)
T ss_pred ceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCc--CHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333211 00111 1 12233334445668999999999998764 3211 12234445555555
Q ss_pred HHH
Q 031651 148 NYL 150 (155)
Q Consensus 148 ~~l 150 (155)
.++
T Consensus 203 ~~~ 205 (208)
T cd08903 203 KAV 205 (208)
T ss_pred HHH
Confidence 554
No 54
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=93.12 E-value=3.1 Score=31.93 Aligned_cols=141 Identities=13% Similarity=0.072 Sum_probs=77.9
Q ss_pred eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEE------EEEeC
Q 031651 4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKF------IEIDN 77 (155)
Q Consensus 4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl------~~~D~ 77 (155)
.+..+.++++|++++.+++. |. .+.++|.|...+.+.++..+..-.+-.+.+.- +-+-.-||=+ +.++
T Consensus 47 ~~k~e~~i~~~~~~~~~vl~--d~-~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~~~--PwPv~~RD~v~~~~~~~~~~- 120 (215)
T cd08877 47 SLRMEGEIDGPLFNLLALLN--EV-ELYKTWVPFCIRSKKVKQLGRADKVCYLRVDL--PWPLSNREAVFRGFGVDRLE- 120 (215)
T ss_pred EEEEEEEecCChhHeEEEEe--hh-hhHhhhcccceeeEEEeecCCceEEEEEEEeC--ceEecceEEEEEEEEEeeec-
Confidence 35567779999999999998 77 56899999955555554432211222222211 1000112222 2232
Q ss_pred CCCeEEEEE--EeCC-----------ccC----cCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch---hhHH
Q 031651 78 KKRVRVTDV--VEGG-----------YLD----VGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF---VSID 137 (155)
Q Consensus 78 ~~~~~~Y~i--leg~-----------~~~----~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~ 137 (155)
++..+...+ +..+ +.. .....+.+-+.++|.++++|.++..+..+|.+.. .|.-. ..+.
T Consensus 121 ~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~-IP~~liN~~~k~ 199 (215)
T cd08877 121 ENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSL-VPKSLLNFVARK 199 (215)
T ss_pred cCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCccc-CCHHHHHHHHHH
Confidence 344332222 1110 000 0235566777888988888999999988887662 23211 2456
Q ss_pred HHHHHHHHHHHHHh
Q 031651 138 TVAKIAEISKNYLL 151 (155)
Q Consensus 138 ~~~~~~k~~e~~l~ 151 (155)
..-.++..|...+.
T Consensus 200 ~~~~~~~~l~k~~~ 213 (215)
T cd08877 200 FAGLLFEKIQKAAK 213 (215)
T ss_pred HHHHHHHHHHHHHh
Confidence 66667776665543
No 55
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=93.08 E-value=3.1 Score=31.78 Aligned_cols=144 Identities=9% Similarity=-0.032 Sum_probs=75.6
Q ss_pred EEEEEEecCChHhHhc-hhhccccccchhhhcCCcceEEEEcCCCCCceE-EEEEecCCCCC--c-ceEEEEEEEEeCCC
Q 031651 5 LSHELEVNVPAGQAWE-LYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTI-LHIKFKPGTPG--F-AGYKEKFIEIDNKK 79 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~-~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~Gsv-R~~~~~~g~~~--~-~~~kErl~~~D~~~ 79 (155)
+..+..+++|+++++. ++. |... .++|.+.+..+++++.-+.--.| ..+........ . ..+--|-...++..
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~--d~~~-~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~ 126 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVL--NVES-LPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENC 126 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHc--Cccc-cceecCcccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCe
Confidence 4557789999999986 454 6654 78999998888777654211111 21221111011 1 12222222233332
Q ss_pred CeEEEEEEeCCcc--Cc---CceEEEEEEEEEeeCC--CceEEEEEEEEEEcCCcccCC-chhhHHHHHHHHHHHHHHHh
Q 031651 80 RVRVTDVVEGGYL--DV---GFTLFRVIFEIIEKGS--DSCIIKSTIEYELREEAAANA-SFVSIDTVAKIAEISKNYLL 151 (155)
Q Consensus 80 ~~~~Y~ileg~~~--~~---~~~~y~~ti~v~~~~~--g~s~v~W~~~y~~~~~~~~~~-~~~~~~~~~~~~k~~e~~l~ 151 (155)
..+...-++=+-. .. ....+.+.+.+.|.++ ++|.++|....+|.+.-+.-- ...+.......++.|..++.
T Consensus 127 ~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP~~lvN~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08868 127 YLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLPQYLVDQALASVLLDFMKHLRKRIA 206 (208)
T ss_pred EEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCcceeeehhhHHHHHHHHHHHHHHHh
Confidence 2222222221110 00 1334456667788644 579999999999887642211 11234555566777777664
No 56
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=92.23 E-value=4.3 Score=31.34 Aligned_cols=118 Identities=11% Similarity=0.052 Sum_probs=64.0
Q ss_pred EEEEEEecCChHhHh-chhhccccccchhhhcCCcceEEEEcCCCCCce-EEEEEecCCCCC--c-ceEEEEEEEEeCCC
Q 031651 5 LSHELEVNVPAGQAW-ELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGT-ILHIKFKPGTPG--F-AGYKEKFIEIDNKK 79 (155)
Q Consensus 5 ~~~~i~i~apa~kvW-~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~Gs-vR~~~~~~g~~~--~-~~~kErl~~~D~~~ 79 (155)
+..+.++++|++++| .++. |..+ .++|.+++.++++++--+.-=. ++.++.+-..++ . ..+.-|--.-+..+
T Consensus 51 fk~~~~v~~~~~~l~~~ll~--D~~~-~~~W~~~~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~ 127 (209)
T cd08906 51 FILKAFMQCPAELVYQEVIL--QPEK-MVLWNKTVSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRDR 127 (209)
T ss_pred EEEEEEEcCCHHHHHHHHHh--Chhh-ccccCccchhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCCc
Confidence 466778999999998 5777 8866 7999999999988865421111 122222211011 1 12333333233333
Q ss_pred C-eEEEEEEeCCccCcCceEE-EEE-----EEEEe--eCCCceEEEEEEEEEEcCCc
Q 031651 80 R-VRVTDVVEGGYLDVGFTLF-RVI-----FEIIE--KGSDSCIIKSTIEYELREEA 127 (155)
Q Consensus 80 ~-~~~Y~ileg~~~~~~~~~y-~~t-----i~v~~--~~~g~s~v~W~~~y~~~~~~ 127 (155)
. .+..++.-.. .. +.+.| ++. +-+.+ .++++|.++|....+|++.-
T Consensus 128 ~i~~~~sv~~~~-~P-~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~l 182 (209)
T cd08906 128 YVSAGISTTHSH-KP-PLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGRL 182 (209)
T ss_pred EEEEEEEEecCC-CC-CCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCCC
Confidence 2 2223332211 11 12222 233 22344 45668999999999998864
No 57
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=91.80 E-value=4.7 Score=30.89 Aligned_cols=141 Identities=13% Similarity=-0.026 Sum_probs=75.0
Q ss_pred EEEEEEe-cCChHhHhchhhccccccchhhhcCCcceEEEEcCCCC--CceEEEEE-ecCCCCCcceEEEEEEEEe-CCC
Q 031651 5 LSHELEV-NVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGG--VGTILHIK-FKPGTPGFAGYKEKFIEID-NKK 79 (155)
Q Consensus 5 ~~~~i~i-~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~--~GsvR~~~-~~~g~~~~~~~kErl~~~D-~~~ 79 (155)
+....++ ++|++.+++++. |.. ..++|.+.+.++++++-++. .--++... ++-...+=..+--|-.-.| +..
T Consensus 52 ~k~~~~~~~~s~~~~~~~l~--D~~-~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~ 128 (209)
T cd08870 52 YLVRGVFEDCTPELLRDFYW--DDE-YRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRS 128 (209)
T ss_pred EEEEEEEcCCCHHHHHHHHc--Chh-hHhhhhhheeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCE
Confidence 4455567 679999999998 875 47899999777777766532 22222211 1110000013333333233 222
Q ss_pred CeEEEEEEeCCcc----CcCceEEEEEEEEEee--CCCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHHH
Q 031651 80 RVRVTDVVEGGYL----DVGFTLFRVIFEIIEK--GSDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNYL 150 (155)
Q Consensus 80 ~~~~Y~ileg~~~----~~~~~~y~~ti~v~~~--~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~l 150 (155)
..+..+-+.-+.. ...+..|.+...+.|. ++++|.+..+..-+|.+. .|.-. ......-+.++.|...+
T Consensus 129 ~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~--IP~wlvN~~~~~~~~~~l~~l~~a~ 206 (209)
T cd08870 129 YVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG--IPRELAKLAVKRGMPGFLKKLENAL 206 (209)
T ss_pred EEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC--CCHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2222222221110 1146778888889997 667788888877776444 33211 12333445555555544
No 58
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=89.99 E-value=7.4 Score=29.99 Aligned_cols=119 Identities=8% Similarity=-0.062 Sum_probs=63.7
Q ss_pred EEEEEEe-cCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecC--CCCCcceEEEEEEEEeCCCC-
Q 031651 5 LSHELEV-NVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKP--GTPGFAGYKEKFIEIDNKKR- 80 (155)
Q Consensus 5 ~~~~i~i-~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~--g~~~~~~~kErl~~~D~~~~- 80 (155)
+..+.++ ++|++.+++++. |.. ..++|-+.+..+++++.-+.--.+-...+.. ...+-..+--|.. .+.++.
T Consensus 49 ~k~~~~~~~~s~e~~~~~l~--D~~-~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~-~~~~~~~ 124 (222)
T cd08871 49 IKVSAIFPDVPAETLYDVLH--DPE-YRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSW-LEFGGEY 124 (222)
T ss_pred EEEEEEeCCCCHHHHHHHHH--Chh-hhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEE-EeCCCEE
Confidence 3345555 799999999998 864 4789999977777775532212332333221 1111112222222 222222
Q ss_pred eE-EEEEEeCC-ccCc---CceEEEEEEEEEeeCCCceEEEEEEEEEEcCCc
Q 031651 81 VR-VTDVVEGG-YLDV---GFTLFRVIFEIIEKGSDSCIIKSTIEYELREEA 127 (155)
Q Consensus 81 ~~-~Y~ileg~-~~~~---~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~ 127 (155)
.+ ..++.-.. +... ....+.+.+.+.|.++++|.++|....++.+..
T Consensus 125 vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~I 176 (222)
T cd08871 125 IIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGSL 176 (222)
T ss_pred EEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCCc
Confidence 11 11211011 1111 123455666788887778999999999987753
No 59
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=89.80 E-value=6.3 Score=28.88 Aligned_cols=114 Identities=13% Similarity=0.243 Sum_probs=69.5
Q ss_pred ceEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEec---CCCCCcceEEEEEEE--EeC
Q 031651 3 GQLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFK---PGTPGFAGYKEKFIE--IDN 77 (155)
Q Consensus 3 ~~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~---~g~~~~~~~kErl~~--~D~ 77 (155)
|+..+...|++|.+-||+..+..| . +..+.|-.+ +-+-+|+ .++..-.+++. -+.+.--.-+-|+++ .|
T Consensus 2 ~tF~~~~~i~aP~E~VWafhsrpd--~-lq~LTppw~-VV~p~g~-eitqgtri~m~l~pfglp~~~tW~Arhte~~~d- 75 (153)
T COG4276 2 GTFVYRTTITAPHEMVWAFHSRPD--A-LQRLTPPWI-VVLPLGS-EITQGTRIAMGLTPFGLPAGLTWVARHTESGFD- 75 (153)
T ss_pred cceEEeeEecCCHHHHhhhhcCcc--H-HHhcCCCcE-EeccCCC-cccceeeeeecceeecCCCCceEEEEeeecccC-
Confidence 577888999999999999998443 3 556667633 2223443 22222233322 121211234455554 53
Q ss_pred CCCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031651 78 KKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREE 126 (155)
Q Consensus 78 ~~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~ 126 (155)
....++=..+.|+. +.-+.+-+-++.+.++ +|++.=.+.|+...+
T Consensus 76 ~~~~FtDv~i~gPf---p~~~WrHtH~F~~egg-~TvliD~Vsye~p~g 120 (153)
T COG4276 76 NGSRFTDVCITGPF---PALNWRHTHNFVDEGG-GTVLIDSVSYELPAG 120 (153)
T ss_pred CcceeeeeeecCCc---cceeeEEEeeeecCCC-cEEEEeeEEeeccCc
Confidence 44566666777765 3436888999988764 688888999997654
No 60
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=87.54 E-value=11 Score=28.73 Aligned_cols=118 Identities=15% Similarity=0.012 Sum_probs=67.2
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecC-CCCCcc-eEEEEEEEEeCCCC--
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKP-GTPGFA-GYKEKFIEIDNKKR-- 80 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~-g~~~~~-~~kErl~~~D~~~~-- 80 (155)
+..+.+++++++++++.+- |. -++|-+++.++++++--+.-=.|-...+.. .....+ .+--|.-..+.++.
T Consensus 46 ~K~~~~v~a~~~~v~~~l~--d~---r~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~ 120 (197)
T cd08869 46 WRASTEVEAPPEEVLQRIL--RE---RHLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGAC 120 (197)
T ss_pred EEEEEEeCCCHHHHHHHHH--HH---HhccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcE
Confidence 4677889999999999875 54 378999988888876542111111122211 101122 23333333333332
Q ss_pred eEEEEEEeC--CccCc--CceEEEEEEEEEeeCCCceEEEEEEEEEEcCCc
Q 031651 81 VRVTDVVEG--GYLDV--GFTLFRVIFEIIEKGSDSCIIKSTIEYELREEA 127 (155)
Q Consensus 81 ~~~Y~ileg--~~~~~--~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~ 127 (155)
.+...-++- .+... ....+.+-+-++|.++++|.+++.+..+|.+.-
T Consensus 121 ~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~i 171 (197)
T cd08869 121 VLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGRS 171 (197)
T ss_pred EEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCCC
Confidence 222222321 11000 134455667788988888999999999998764
No 61
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=87.28 E-value=11 Score=28.80 Aligned_cols=117 Identities=15% Similarity=-0.007 Sum_probs=65.4
Q ss_pred EEEEEEe-cCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCce-EEEEEecCC--CCCcceEEEEEEEEeCCCC
Q 031651 5 LSHELEV-NVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGT-ILHIKFKPG--TPGFAGYKEKFIEIDNKKR 80 (155)
Q Consensus 5 ~~~~i~i-~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~Gs-vR~~~~~~g--~~~~~~~kErl~~~D~~~~ 80 (155)
+..+.++ ++|++.+.+++. |.. ..++|.+.+.++++++.+...++ +-.+.+.-. ..+=..+-.|-...|+++.
T Consensus 47 ~k~~~~~~d~s~~~~~~~~~--D~~-~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~ 123 (207)
T cd08911 47 YKVYGSFDDVTARDFLNVQL--DLE-YRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENK 123 (207)
T ss_pred EEEEEEEcCCCHHHHHHHHh--CHH-HHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCC
Confidence 3344445 999999999998 875 47899999888888876422222 112221110 0000245555555666654
Q ss_pred eE---EEEEEe-CCccC---cCceEEEEEEEEEee---CCCceEEEEEEEEEEc
Q 031651 81 VR---VTDVVE-GGYLD---VGFTLFRVIFEIIEK---GSDSCIIKSTIEYELR 124 (155)
Q Consensus 81 ~~---~Y~ile-g~~~~---~~~~~y~~ti~v~~~---~~g~s~v~W~~~y~~~ 124 (155)
.+ .+++-. .-+.. -.+.+|.+...+.|. ++++|.+.++..-+|.
T Consensus 124 ~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPg 177 (207)
T cd08911 124 LIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPG 177 (207)
T ss_pred EEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCC
Confidence 42 222211 10100 146778888888886 3457777765544443
No 62
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=84.11 E-value=16 Score=27.71 Aligned_cols=139 Identities=9% Similarity=-0.071 Sum_probs=71.7
Q ss_pred eEEEEEEecCChHhHhchhhccc--cccchhhhcCCcceEEEEcCCCCCceEEEEEecC-C--CC--CcceE--EEEEEE
Q 031651 4 QLSHELEVNVPAGQAWELYGTIK--LVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKP-G--TP--GFAGY--KEKFIE 74 (155)
Q Consensus 4 ~~~~~i~i~apa~kvW~~~~~~d--~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~-g--~~--~~~~~--kErl~~ 74 (155)
.+..+.+++++++++.+.+. | .. ..++|-+.+..+++++.-+. ....+.+.. . .+ ..+.+ .+....
T Consensus 47 ~~k~~~~i~~~~~~v~~~l~--d~~~~-~r~~Wd~~~~~~~~le~id~--~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~ 121 (206)
T cd08867 47 LYRAEGIVDALPEKVIDVII--PPCGG-LRLKWDKSLKHYEVLEKISE--DLCVGRTITPSAAMGLISPRDFVDLVYVKR 121 (206)
T ss_pred EEEEEEEEcCCHHHHHHHHH--hcCcc-ccccccccccceEEEEEeCC--CeEEEEEEccccccCccCCcceEEEEEEEE
Confidence 36677889999999999987 6 33 36789988889888876432 122222211 1 01 01111 121122
Q ss_pred EeCCCCeEEEEEEeCCccCcCceE-EEEE-----EEEEeeC--CCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHH
Q 031651 75 IDNKKRVRVTDVVEGGYLDVGFTL-FRVI-----FEIIEKG--SDSCIIKSTIEYELREEAAANASF---VSIDTVAKIA 143 (155)
Q Consensus 75 ~D~~~~~~~Y~ileg~~~~~~~~~-y~~t-----i~v~~~~--~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~ 143 (155)
+++....+...-++=+... +.+. .++. +-+.|.+ +++|.++|.+..+|++.- |.-. .+.......+
T Consensus 122 ~~~~~~~i~~~Sv~hp~~p-~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~i--P~~lvn~~~~~~~~~~~ 198 (206)
T cd08867 122 YEDNQWSSSGKSVDIPERP-PTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMI--PQSLVESAMPSNLVNFY 198 (206)
T ss_pred eCCCeEEEEEEeccCCCCC-CCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCC--cHHHHHhhhhhhHHHHH
Confidence 3332222222223211110 1111 2233 3355543 457999999999998764 3211 1334444555
Q ss_pred HHHHHHH
Q 031651 144 EISKNYL 150 (155)
Q Consensus 144 k~~e~~l 150 (155)
+.|..++
T Consensus 199 ~~lr~~~ 205 (206)
T cd08867 199 TDLVKGV 205 (206)
T ss_pred HHHHHhc
Confidence 5555543
No 63
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=84.11 E-value=15 Score=27.42 Aligned_cols=143 Identities=13% Similarity=-0.074 Sum_probs=77.6
Q ss_pred EEEEEEecCChHhHh-chhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCc---ceEEEEEEEEe-CCC
Q 031651 5 LSHELEVNVPAGQAW-ELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGF---AGYKEKFIEID-NKK 79 (155)
Q Consensus 5 ~~~~i~i~apa~kvW-~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~---~~~kErl~~~D-~~~ 79 (155)
+..+..++++++++. .++. |... .++|.+.+.++++++-...-..+..+.....-++. ..+--|-...+ +..
T Consensus 47 ~k~~~~v~~~~~~~~~~~~~--d~~~-r~~Wd~~~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~ 123 (206)
T smart00234 47 SRAVGVVPMVCADLVEELMD--DLRY-RPEWDKNVAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGS 123 (206)
T ss_pred EEEEEEEecChHHHHHHHHh--cccc-hhhCchhcccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCc
Confidence 455667999999855 5665 7644 78999998888877653211344444332110011 12212211122 222
Q ss_pred CeEEEEEEeCCcc---C--cCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHHHh
Q 031651 80 RVRVTDVVEGGYL---D--VGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNYLL 151 (155)
Q Consensus 80 ~~~~Y~ileg~~~---~--~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~l~ 151 (155)
..+...-++.+-. . .....+.+.+.+.|.+++.|.++|....++.+.- |.-. .+......+++.+-++|.
T Consensus 124 ~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~i--P~~lvn~~~~~~~~~~~~~~~~~~~ 201 (206)
T smart00234 124 YAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWL--PHWLVRSLIKSGLAEFAKTWVATLQ 201 (206)
T ss_pred EEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCc--cceeehhhhhhhHHHHHHHHHHHHH
Confidence 3333322222211 0 0234567778888988878999999999988753 2211 234555555666655554
Q ss_pred h
Q 031651 152 N 152 (155)
Q Consensus 152 ~ 152 (155)
.
T Consensus 202 ~ 202 (206)
T smart00234 202 K 202 (206)
T ss_pred H
Confidence 3
No 64
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=80.59 E-value=24 Score=27.28 Aligned_cols=117 Identities=10% Similarity=-0.055 Sum_probs=67.2
Q ss_pred eEEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEec----CCCCCcceEEEEEEEEeCCC
Q 031651 4 QLSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFK----PGTPGFAGYKEKFIEIDNKK 79 (155)
Q Consensus 4 ~~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~----~g~~~~~~~kErl~~~D~~~ 79 (155)
.+..+++++++++++...+- |. .++|.+++.+.++++.-+. ....+.+. -....-..+.-|.-..|..+
T Consensus 53 ~~r~~~~i~a~~~~vl~~ll--d~---~~~Wd~~~~e~~vIe~ld~--~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~ 125 (204)
T cd08908 53 LWRTTIEVPAAPEEILKRLL--KE---QHLWDVDLLDSKVIEILDS--QTEIYQYVQNSMAPHPARDYVVLRTWRTNLPK 125 (204)
T ss_pred EEEEEEEeCCCHHHHHHHHH--hh---HHHHHHHhhheEeeEecCC--CceEEEEEccCCCCCCCcEEEEEEEEEEeCCC
Confidence 45678899999999999986 54 5788888666666655321 11222221 11111123344344444444
Q ss_pred CeEEEEEEeCCccCcC-----ceEEEEEEEEEeeCCCceEEEEEEEEEEcCCc
Q 031651 80 RVRVTDVVEGGYLDVG-----FTLFRVIFEIIEKGSDSCIIKSTIEYELREEA 127 (155)
Q Consensus 80 ~~~~Y~ileg~~~~~~-----~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~ 127 (155)
..+.-.+....+-..| ...+.+..-++|.++|+|.++..+..+|.+..
T Consensus 126 g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~i 178 (204)
T cd08908 126 GACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGHM 178 (204)
T ss_pred CeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCCC
Confidence 4443333211111112 33445556678988889999999999987763
No 65
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=69.11 E-value=45 Score=24.77 Aligned_cols=143 Identities=12% Similarity=-0.035 Sum_probs=82.3
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCC-CCcc---eEEEEEEEE-eCCC
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGT-PGFA---GYKEKFIEI-DNKK 79 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~-~~~~---~~kErl~~~-D~~~ 79 (155)
+.....++++++++...+. +-.. .|-+.+.++++++--..-..+....+.... ++.. .+--|.... .+..
T Consensus 48 ~k~~~~v~~~~~~~~~~~~--~~~~---~Wd~~~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~ 122 (206)
T PF01852_consen 48 FKAEGVVPASPEQVVEDLL--DDRE---QWDKMCVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDGT 122 (206)
T ss_dssp EEEEEEESSCHHHHHHHHH--CGGG---HHSTTEEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTSE
T ss_pred EEEEEEEcCChHHHHHHHH--hhHh---hcccchhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccce
Confidence 4566779999998887775 4322 889888888888763222455555444321 1211 111122222 3333
Q ss_pred CeEEEEEEeCCccC------cCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHHHHH
Q 031651 80 RVRVTDVVEGGYLD------VGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISKNYL 150 (155)
Q Consensus 80 ~~~~Y~ileg~~~~------~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~l 150 (155)
..+..+=++.+... -....+.+.+.+.|.+++.|.+++...-++.+.. |.-. .+......+++.+-+.|
T Consensus 123 ~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~i--P~~~~n~~~~~~~~~~~~~~~~~~ 200 (206)
T PF01852_consen 123 YVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWI--PSWLVNMVVKSQPPNFLKNLRKAL 200 (206)
T ss_dssp EEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSS--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCC--hHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444333332211 0234566777789998888999999998887753 2211 13455556777777777
Q ss_pred hhCC
Q 031651 151 LNNR 154 (155)
Q Consensus 151 ~~~~ 154 (155)
.++.
T Consensus 201 ~~~~ 204 (206)
T PF01852_consen 201 KKQK 204 (206)
T ss_dssp HHCC
T ss_pred HHhc
Confidence 6654
No 66
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=68.74 E-value=43 Score=24.43 Aligned_cols=40 Identities=8% Similarity=0.199 Sum_probs=31.1
Q ss_pred EEEEEEecCChHhHhchhhccccccchhhhcCCcceEEEEcCC
Q 031651 5 LSHELEVNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGD 47 (155)
Q Consensus 5 ~~~~i~i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGd 47 (155)
++.++..+-+.+.+-.+++ |..-++|+++|.+++++ .+++
T Consensus 3 ~~~~i~t~H~~e~v~~ILS--DP~F~lp~l~p~ik~v~-~~~~ 42 (136)
T PF11485_consen 3 IEIEIKTSHDIEVVLTILS--DPEFVLPRLFPPIKSVK-VEEN 42 (136)
T ss_dssp EEEEEE-SS-HHHHHHHHT---HHHHHHHHSTTEEEEE--STT
T ss_pred EEEEeccCCChHheEEEec--CCccEecccCCceEEEE-ecCC
Confidence 6778888999999999999 87778999999999999 4554
No 67
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=66.68 E-value=42 Score=23.53 Aligned_cols=96 Identities=19% Similarity=0.162 Sum_probs=57.0
Q ss_pred EEEEecCChHhHhchhhccccccchhhhcC---C-cceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeE
Q 031651 7 HELEVNVPAGQAWELYGTIKLVKLVEKEYD---T-VEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVR 82 (155)
Q Consensus 7 ~~i~i~apa~kvW~~~~~~d~~~~lp~~~P---~-v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~ 82 (155)
.+.++++||+.+|+.+- +. ++.++-- . +..-+| +| .-=.=.+..+ . .++=+|+.+ ..++.|
T Consensus 3 I~~~l~v~a~~ff~~l~--~s--~~~DI~~~tgk~~~~~~L-~G-----~~Y~K~~~~~-~---~~~v~It~~-~~~~~Y 67 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLI--DS--LLYDIKQATGKKLPVKQL-KG-----FSYQKKFKNK-R---EAKVKITEY-EPNKRY 67 (120)
T ss_pred EEEEecCCHHHHHHHHH--HH--HHHHHHHHcCCCCChhhc-CC-----cEEEEEcCCC-C---EEEEEEEEE-cCCCEE
Confidence 45569999999999986 42 3433221 1 111111 22 2212223333 1 566668877 677788
Q ss_pred EEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEE
Q 031651 83 VTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYEL 123 (155)
Q Consensus 83 ~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~ 123 (155)
.+++-.. ...+..+.++.|.++|.|.|.-+=++.+
T Consensus 68 ~~~~~s~------~~~~~i~Y~i~~~~~~~~~v~y~E~~~~ 102 (120)
T PF11687_consen 68 AATFSSS------RGTFTISYEIEPLDDGSIEVTYEEEYES 102 (120)
T ss_pred EEEEEec------CCCEEEEEEEEECCCCcEEEEEEEEEcc
Confidence 8877532 3346788889999888788776655554
No 68
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=63.32 E-value=72 Score=25.09 Aligned_cols=141 Identities=16% Similarity=0.033 Sum_probs=76.4
Q ss_pred EEEEEEec-CChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCCCC---Ccce-E-EEEEEEEeCC
Q 031651 5 LSHELEVN-VPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTP---GFAG-Y-KEKFIEIDNK 78 (155)
Q Consensus 5 ~~~~i~i~-apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~---~~~~-~-kErl~~~D~~ 78 (155)
+....+++ ++++.+.+++. |... .++|...+.++++++-... + .+.+...-..+ ..+. + .-++...|+.
T Consensus 54 ~Ka~~~v~~vt~~~~~~~l~--D~~~-r~~Wd~~~~~~~vie~l~~-~-~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~ 128 (235)
T cd08872 54 LKATHAVKGVTGHEVCHYFF--DPDV-RMDWETTLENFHVVETLSQ-D-TLIFHQTHKRVWPAAQRDALFVSHIRKIPAL 128 (235)
T ss_pred EEEEEEECCCCHHHHHHHHh--Chhh-HHHHHhhhheeEEEEecCC-C-CEEEEEEccCCCCCCCcEEEEEEEEEecCcc
Confidence 55666777 99999999988 8754 7899988888887765421 1 12222211101 0111 1 2222223332
Q ss_pred C--------CeEEEEEEeCC-ccCcCceEEEEEEE-----------------EEeeCCCceEEEEEEEEEEcCCcccCCc
Q 031651 79 K--------RVRVTDVVEGG-YLDVGFTLFRVIFE-----------------IIEKGSDSCIIKSTIEYELREEAAANAS 132 (155)
Q Consensus 79 ~--------~~~~Y~ileg~-~~~~~~~~y~~ti~-----------------v~~~~~g~s~v~W~~~y~~~~~~~~~~~ 132 (155)
. -.+..++.-.. +.. -...++... ++| ++++|.+++....+|.+..+..--
T Consensus 129 ~~~~~~~~~vii~~Sv~h~~~P~~--~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG~iP~wvv 205 (235)
T cd08872 129 EEPNAHDTWIVCNFSVDHDSAPLN--NKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGGWAPASVL 205 (235)
T ss_pred ccccCCCeEEEEEecccCccCCCC--CCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCCCccHHHH
Confidence 1 12333332222 111 122334332 223 356799999988888776422111
Q ss_pred -hhhHHHHHHHHHHHHHHHhhC
Q 031651 133 -FVSIDTVAKIAEISKNYLLNN 153 (155)
Q Consensus 133 -~~~~~~~~~~~k~~e~~l~~~ 153 (155)
..++..+-++.+.+.+|++.+
T Consensus 206 n~~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 206 RAVYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred HHHHHhhchHHHHHHHHHHHHh
Confidence 125666778889999998865
No 69
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=52.90 E-value=1e+02 Score=23.56 Aligned_cols=137 Identities=11% Similarity=-0.010 Sum_probs=70.2
Q ss_pred EEEEEEec-CChHhHhchhhccccccchhhhcCCcceEEEEcCCCCCceEEEEEecCC--CCCcceE-EEEEEEEeCCCC
Q 031651 5 LSHELEVN-VPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGDGGVGTILHIKFKPG--TPGFAGY-KEKFIEIDNKKR 80 (155)
Q Consensus 5 ~~~~i~i~-apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g--~~~~~~~-kErl~~~D~~~~ 80 (155)
+..+.+++ ++++.+.+++. |... .++|.+.+.++.-.+.++. -+-.+.+... ..+=..+ .-+...+|..+.
T Consensus 51 ~k~~~~~~~~s~~~~~~~l~--D~~~-r~~Wd~~~~~~~~~~~~~~--~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~~ 125 (207)
T cd08910 51 YKVFGVLEDCSPSLLADVYM--DLEY-RKQWDQYVKELYEKECDGE--TVIYWEVKYPFPLSNRDYVYIRQRRDLDVEGR 125 (207)
T ss_pred EEEEEEEcCCCHHHHHHHHh--CHHH-HHHHHHHHHhheeecCCCC--EEEEEEEEcCCCCCCceEEEEEEeccccCCCC
Confidence 34466777 79999999998 8754 7899998444321222221 1222222110 0000122 112223444443
Q ss_pred eEEE---EEEeC-------CccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCch---hhHHHHHHHHHHHH
Q 031651 81 VRVT---DVVEG-------GYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASF---VSIDTVAKIAEISK 147 (155)
Q Consensus 81 ~~~Y---~ileg-------~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e 147 (155)
.+.. ...+= +.. ....|.+.+.++|.++++|.+.....-+|.+.. |.-. ......-..++.|.
T Consensus 126 ~~~iv~~~s~~~p~~P~~~~~V--Rv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~I--P~wlvN~~~~~~~~~~l~~l~ 201 (207)
T cd08910 126 KIWVILARSTSLPQLPEKPGVI--RVKQYKQSLAIESDGKKGSKVFMYYFDNPGGMI--PSWLINWAAKNGVPNFLKDMQ 201 (207)
T ss_pred eEEEEEecCCCCCCCCCCCCCE--EEEEEEEEEEEEeCCCCceEEEEEEEeCCCCcc--hHHHHHHHHHHhhHHHHHHHH
Confidence 2211 11111 111 367788888888887778988888777775543 3211 12344445555554
Q ss_pred HHH
Q 031651 148 NYL 150 (155)
Q Consensus 148 ~~l 150 (155)
..+
T Consensus 202 ka~ 204 (207)
T cd08910 202 KAC 204 (207)
T ss_pred HHH
Confidence 443
No 70
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=28.54 E-value=2.7e+02 Score=22.48 Aligned_cols=52 Identities=6% Similarity=0.059 Sum_probs=34.9
Q ss_pred EeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHH
Q 031651 87 VEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYELREEAAANASFVSIDTVAKIAEISKNY 149 (155)
Q Consensus 87 leg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~ 149 (155)
|+-+++ .-..++.|++-++.+.=.+.++|.+.|. .++. +++...+.++++..
T Consensus 84 lnQPvF--~aNyikGtV~pvpgGg~~g~as~Kl~F~-~GG~--------ieFgq~~l~~~s~a 135 (261)
T KOG3294|consen 84 LNQPVF--GANYIKGTVQPVPGGGWEGEASFKLTFN-EGGC--------IEFGQLLLQAASRA 135 (261)
T ss_pred ecCccc--ccceeeeeEeecCCCCccceeEEEEEec-CCCc--------hhHHHHHHHHHHHH
Confidence 345555 3556899999888765357889999998 4443 45666666665544
No 71
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=28.45 E-value=1.3e+02 Score=24.28 Aligned_cols=38 Identities=5% Similarity=0.051 Sum_probs=26.4
Q ss_pred EEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhhCCC
Q 031651 116 KSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNNRD 155 (155)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~ 155 (155)
.|.+.+++..+.+.. ....+....+.+.+|+++.++|+
T Consensus 248 ~~~i~~~~~~~~~~~--~~~~~~t~~~n~~lE~~Ir~~Pe 285 (305)
T TIGR02208 248 KFELTVRPAMATELS--VDPEQEARAMNKEVEQFILPYPE 285 (305)
T ss_pred eEEEEEecCCCCCCC--CCHHHHHHHHHHHHHHHHHcCch
Confidence 366667654332112 23567889999999999999996
No 72
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=27.70 E-value=4.1e+02 Score=24.70 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=36.9
Q ss_pred ecCChHhHhchhhccccccchhhh--cCC-cceEEEEcCCC-----CCceEEEEEecCCCCCcceEEEEEEEEeCCCCeE
Q 031651 11 VNVPAGQAWELYGTIKLVKLVEKE--YDT-VEEIEVVEGDG-----GVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVR 82 (155)
Q Consensus 11 i~apa~kvW~~~~~~d~~~~lp~~--~P~-v~s~e~~eGdg-----~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~ 82 (155)
+.++|||-=++++ + ..++..+ |-. |..+.++.+.+ -=|.||.|.+.++ .+.|. .-..++.|
T Consensus 155 vTgsaDKtIklWk--~-~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge-----~l~~~---~ghtn~vY 223 (745)
T KOG0301|consen 155 VTGSADKTIKLWK--G-GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE-----VLLEM---HGHTNFVY 223 (745)
T ss_pred EeccCcceeeecc--C-CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCc-----eeeee---eccceEEE
Confidence 5677776655554 2 1222222 223 66666665521 2489999999543 34443 44677777
Q ss_pred EEEEE
Q 031651 83 VTDVV 87 (155)
Q Consensus 83 ~Y~il 87 (155)
++++.
T Consensus 224 sis~~ 228 (745)
T KOG0301|consen 224 SISMA 228 (745)
T ss_pred EEEec
Confidence 77743
No 73
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ]. Saliva of the blood-sucking bug Rhodnius prolixus (Triatomid bug) contains four homologous nitrophorins, designated NP1 to NP4 in order of their relative abundance in the glands []. As isolated, nitrophorins contain nitric oxide (NO) ligated to the ferric (FeIII) haem iron. Histamine, which is released by the host in response to tissue damage, is another nitrophorin ligand. Nitrophorins transport NO to the feeding site. Dilution, binding of histamine and increase in pH (from pH ~5 in salivary gland to pH ~7.4 in the host tissue) facilitate the release of NO into the tissue where it induces vasodilatation. The salivary nitrophorin from the hemipteran Cimex lectularius (Bed bug) has no sequence similarity to R. prolixus nitrophorins. It is suggested that the two classes of insect nitrophorins have arisen as a product of the convergent evolution []. 3-D structures of several nitrophorin complexes are known []. The nitrophorin structures reveal lipocalin-like eight-stranded beta-barrel, three alpha-helices and two disulphide bonds, with haem inserted into one end of the barrel. Members of the lipocalin family are known to bind a variety of small hydrophobic ligands, including biliverdin, in a similar fashion (see [] for review). The haem iron is ligated to His59. The position of His59 is restrained through water-mediated hydrogen bond to the carboxylate of Asp70. The His59-Fe bond is bent ~15 degrees out of the imidazole plane. Asp70 forms an unusual hydrogen bond with one of the haem propionates, suggesting the residue has an altered pKa. In NP1-histamine structure, the planes of His59 and histamine imidazole rings lie in an arrangement almost identical to that found in oxidised cytochrome b5. This entry represents the nitrophorin structural domain.; GO: 0051381 histamine binding, 0070026 nitric oxide binding; PDB: 1SXX_A 2OFM_X 1X8Q_A 3TGA_A 1SXU_A 1IKJ_A 1YWD_A 1X8N_A 3FLL_A 1X8O_A ....
Probab=26.47 E-value=2.9e+02 Score=21.01 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=22.5
Q ss_pred eEEEEEEEEeCCCCeEEEEEEeCCcc
Q 031651 67 GYKEKFIEIDNKKRVRVTDVVEGGYL 92 (155)
Q Consensus 67 ~~kErl~~~D~~~~~~~Y~ileg~~~ 92 (155)
.+||-+-.+++.+.++.|.+-++...
T Consensus 49 kvKE~~~~ynp~~~~~~Y~is~~~l~ 74 (178)
T PF02087_consen 49 KVKEALYHYNPKNKTYFYDISESKLE 74 (178)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred ceEEEEEEecCCCceEEEEeeeeecc
Confidence 79999999999999999998776543
No 74
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=25.72 E-value=1.9e+02 Score=18.48 Aligned_cols=60 Identities=8% Similarity=-0.030 Sum_probs=32.0
Q ss_pred hhhhcCCcceEEEEcCCCCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEEEEEeCCccCcCceEE
Q 031651 31 VEKEYDTVEEIEVVEGDGGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTDVVEGGYLDVGFTLF 99 (155)
Q Consensus 31 lp~~~P~v~s~e~~eGdg~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~ileg~~~~~~~~~y 99 (155)
+.-|.|+-++|+|.=.+ +....+.-..+ | +-+-...-+ +...|.|.+.++....+||..+
T Consensus 12 F~vwAP~A~~V~l~l~~---~~~~~m~~~~~-G----~W~~~v~~~-~g~~Y~y~v~~~~~~~DP~a~~ 71 (85)
T cd02853 12 FRLWAPDAKRVTLRLDD---GEEIPMQRDGD-G----WFEAEVPGA-AGTRYRYRLDDGTPVPDPASRF 71 (85)
T ss_pred EEEeCCCCCEEEEEecC---CCcccCccCCC-c----EEEEEeCCC-CCCeEEEEECCCcCCCCCcccc
Confidence 34478888888876322 11222222222 2 222222233 7788999998765555577533
No 75
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=23.80 E-value=3.7e+02 Score=21.24 Aligned_cols=103 Identities=9% Similarity=0.188 Sum_probs=59.7
Q ss_pred ecCChHhHhchhhccccccchhhhcCCcceEEEEcCC-CCCceEEEEEecCCCCCcceEEEEEEEEeCCCCeEEEEEEeC
Q 031651 11 VNVPAGQAWELYGTIKLVKLVEKEYDTVEEIEVVEGD-GGVGTILHIKFKPGTPGFAGYKEKFIEIDNKKRVRVTDVVEG 89 (155)
Q Consensus 11 i~apa~kvW~~~~~~d~~~~lp~~~P~v~s~e~~eGd-g~~GsvR~~~~~~g~~~~~~~kErl~~~D~~~~~~~Y~ileg 89 (155)
+..+++.+|++++ +-.+ ..+..|-.++.++..-+ ++ +.+-.+..+=- +=.....-+++ .++..++.+-- -+|
T Consensus 76 igysp~~my~vVS--~V~~-Y~~FVPwC~kS~V~~~~P~~-~~kA~LeVGFk-~l~E~y~S~Vt-~~~p~l~kt~~-~d~ 148 (227)
T KOG3177|consen 76 IGYSPSEMYSVVS--NVSE-YHEFVPWCKKSDVTSRRPSG-PLKADLEVGFK-PLDERYTSNVT-CVKPHLTKTVC-ADG 148 (227)
T ss_pred hCCCHHHHHHHHH--hHHH-hhccccceeccceeecCCCC-CceeeEEecCc-ccchhheeeeE-EecccceEEee-ccc
Confidence 7789999999998 6543 56677775555544333 22 34444543211 10112333433 44444443322 245
Q ss_pred CccCcCceEEEEEEEEEeeC--CCceEEEEEEEEEEc
Q 031651 90 GYLDVGFTLFRVIFEIIEKG--SDSCIIKSTIEYELR 124 (155)
Q Consensus 90 ~~~~~~~~~y~~ti~v~~~~--~g~s~v~W~~~y~~~ 124 (155)
.+ +.......++.|.. .+.|.+...++|+-+
T Consensus 149 rL----F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~ 181 (227)
T KOG3177|consen 149 RL----FNHLITIWSFKPGPNIPRTCTLDFSVSFEFK 181 (227)
T ss_pred cH----HHhhhheeeeccCCCCCCeEEEEEEEEEEeh
Confidence 44 33345678888887 578999999999864
No 76
>PRK05645 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=23.53 E-value=1.8e+02 Score=23.32 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=26.2
Q ss_pred EEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhhCCC
Q 031651 116 KSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNNRD 155 (155)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~ 155 (155)
.+++.+++.... ..+....+....+.+.+|+++.++|+
T Consensus 238 ~y~i~~~~~~~~--~~~~~~~~~t~~~~~~lE~~Ir~~Pe 275 (295)
T PRK05645 238 GYKVILEAAPED--MYSTDVEVSAAAMSKVVERYVRAYPS 275 (295)
T ss_pred eEEEEEecCCcC--CCCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 467777654321 11123568888999999999999985
No 77
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=22.18 E-value=1.8e+02 Score=23.12 Aligned_cols=38 Identities=3% Similarity=0.029 Sum_probs=26.2
Q ss_pred EEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhhCCC
Q 031651 116 KSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNNRD 155 (155)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~ 155 (155)
.+.+.+.+....... ....+.+..+.+.+|+++.++|+
T Consensus 232 ~~~i~i~~~~~~~~~--~~~~~~t~~~~~~lE~~Ir~~P~ 269 (289)
T PRK08706 232 TVTLHFYPAWDSFPS--EDAQADAQRMNRFIEERVREHPE 269 (289)
T ss_pred cEEEEEecCCCCCCC--CCHHHHHHHHHHHHHHHHHcCcH
Confidence 366666554322122 23578899999999999999985
No 78
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=21.57 E-value=3.3e+02 Score=19.83 Aligned_cols=44 Identities=7% Similarity=0.120 Sum_probs=28.8
Q ss_pred CCCeEEEEEEeCCccCcCceEEEEEEEEEeeCCCceEEEEEEEEE
Q 031651 78 KKRVRVTDVVEGGYLDVGFTLFRVIFEIIEKGSDSCIIKSTIEYE 122 (155)
Q Consensus 78 ~~~~~~Y~ileg~~~~~~~~~y~~ti~v~~~~~g~s~v~W~~~y~ 122 (155)
....+.|.+.-+-.+. .+.++...+++.|.+.+.|.+.|..-+.
T Consensus 80 ~~~~~~~~iFPN~~i~-~~~~~~~~~~~~P~~~~~t~~~~~~~~~ 123 (190)
T cd08885 80 RRRLVLFAIFPTHLLA-LTPDYVWWLSLLPEGAGRVRVRWGVLVA 123 (190)
T ss_pred hcceEEEEECCcEEEE-ecCCeEEEEEEEecCCCeEEEEEEEEEc
Confidence 3455666665443333 3556677889999888888888865443
No 79
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=20.86 E-value=2.2e+02 Score=22.94 Aligned_cols=38 Identities=11% Similarity=0.008 Sum_probs=26.2
Q ss_pred EEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhhCCC
Q 031651 116 KSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNNRD 155 (155)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~ 155 (155)
.+.+.+++..+.... ....+....+.+.+|+++.++|+
T Consensus 251 ~~~i~~~~~~~~~~~--~d~~~~t~~~n~~lE~~Ir~~Pe 288 (309)
T PRK06860 251 GYELIILPPEDSPPL--DDAEATAAWMNKVVEKCILMAPE 288 (309)
T ss_pred eEEEEEecCCCCCCC--CCHHHHHHHHHHHHHHHHHcCch
Confidence 466777654432211 23467888889999999999985
No 80
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=20.45 E-value=72 Score=25.70 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhhCCC
Q 031651 140 AKIAEISKNYLLNNRD 155 (155)
Q Consensus 140 ~~~~k~~e~~l~~~~~ 155 (155)
.++|++||-||.+||.
T Consensus 220 D~LYrAID~YLk~Hp~ 235 (258)
T PF03000_consen 220 DGLYRAIDIYLKAHPG 235 (258)
T ss_pred chHHHHHHHHHHHccc
Confidence 3666777777776663
No 81
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=20.39 E-value=2.2e+02 Score=23.02 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=26.6
Q ss_pred EEEEEEEEcCCcccCCchhhHHHHHHHHHHHHHHHhhCCC
Q 031651 116 KSTIEYELREEAAANASFVSIDTVAKIAEISKNYLLNNRD 155 (155)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~ 155 (155)
.|.+.+++..+....+ ...+....+.+.+|+++.++|+
T Consensus 257 ~~~i~~~~~~~~~~~~--d~~~~t~~~~~~lE~~Ir~~Pe 294 (314)
T PRK08943 257 RLDIEIRPPMDDLLSA--DDETIARRMNEEVEQFVGPHPE 294 (314)
T ss_pred eEEEEEecCCCCCCCC--CHHHHHHHHHHHHHHHHHcCcH
Confidence 4677776644322222 3467888999999999999985
No 82
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=20.27 E-value=2.3e+02 Score=17.63 Aligned_cols=56 Identities=5% Similarity=-0.106 Sum_probs=28.9
Q ss_pred hhhhcCCcceEEEEcCCCCCceEEEEEec---CCCCCcceEEEEEE-EEeCCCCeEEEEEEeCC
Q 031651 31 VEKEYDTVEEIEVVEGDGGVGTILHIKFK---PGTPGFAGYKEKFI-EIDNKKRVRVTDVVEGG 90 (155)
Q Consensus 31 lp~~~P~v~s~e~~eGdg~~GsvR~~~~~---~g~~~~~~~kErl~-~~D~~~~~~~Y~ileg~ 90 (155)
+--|.|+-++|+|+-.+...-..+.+.+. .+ | .-.=.|. .+.+....|.|++...+
T Consensus 15 F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~-G---~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 15 FRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDD-G---VWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp EEEE-TTESEEEEEEETTTSSEEEEEEEEEECTT-T---EEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred EEEECCCCCEEEEEEEeeecCCCceEEeeecCCC-C---EEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 44578998999977444221123333333 22 3 4444544 34333568888887655
Done!