BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031652
(155 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 82/121 (67%), Gaps = 2/121 (1%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
RL KE K+++ E + D + DSN F+W IKGP TPYEGG F LA +P YP
Sbjct: 27 RLQKELKDIENENVQEIDAHI--KDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPY 84
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNC 126
PP+++F+TKI+HPN+ +TG ICLD+LKN WSPA T+++ +I AL++ P+PD P +
Sbjct: 85 NPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDA 144
Query: 127 D 127
+
Sbjct: 145 E 145
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 79/120 (65%), Gaps = 3/120 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE + + E P I V N + LI GP TPYEGG ++L +PEQYP+
Sbjct: 5 RITKETQNLANEPP--PGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPM 62
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNC 126
+PP+VRFLTKI+HPN+ K G ICLDILK+ WSPA +++V +I AL++ PEPD PL+
Sbjct: 63 EPPKVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDS 121
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 79/120 (65%), Gaps = 3/120 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE + + E P I V N + LI GP TPYEGG ++L +PEQYP+
Sbjct: 5 RITKETQNLANEPP--PGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPM 62
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNC 126
+PP+VRFLTKI+HPN+ K G ICLDILK+ WSPA +++V +I AL++ PEPD PL+
Sbjct: 63 EPPKVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDS 121
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 89/146 (60%), Gaps = 5/146 (3%)
Query: 4 SRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQ 63
+R RL +++K ++ + A P + N+ W A+I GP++TPYE G F+L E+
Sbjct: 5 ARRRLMRDFKRMKED--APPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEE 62
Query: 64 YPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSP 123
YP +PP V+FL+++FHPNV + GEICLDIL+N W+P + + S+ +I +L P P SP
Sbjct: 63 YPNKPPHVKFLSEMFHPNV-YANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASP 121
Query: 124 LNCDSGMWTLFWYRLVEFISRYYPSV 149
N ++ TLF +++ R +V
Sbjct: 122 ANVEAA--TLFKDHKSQYVKRVKETV 145
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 83/126 (65%), Gaps = 3/126 (2%)
Query: 4 SRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQ 63
+R RL +++K +Q++ A I D+NI W A+I GP +TP++GG F+L+ E
Sbjct: 5 ARKRLMRDFKRLQQDPPAG--ISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSED 62
Query: 64 YPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSP 123
YP +PP VRF++++FHPN+ + G ICLDIL+N WSP + + ++ +I +L+ P P+SP
Sbjct: 63 YPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSP 121
Query: 124 LNCDSG 129
N ++
Sbjct: 122 ANSEAA 127
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 80/123 (65%), Gaps = 3/123 (2%)
Query: 4 SRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQ 63
SR RL +++K++Q + A + + NI W A+I GP ETP+E G F+L+ E+
Sbjct: 5 SRRRLMRDFKKLQEDPPAG--VSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEE 62
Query: 64 YPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSP 123
YP +PP V+F++K+FHPNV + G ICLDIL+N WSP + + ++ +I +L+ P P+SP
Sbjct: 63 YPNKPPTVKFISKMFHPNV-YADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSP 121
Query: 124 LNC 126
N
Sbjct: 122 ANS 124
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 80/123 (65%), Gaps = 3/123 (2%)
Query: 4 SRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQ 63
SR RL +++K++Q + A + + NI W A+I GP ETP+E G F+L+ E+
Sbjct: 8 SRRRLMRDFKKLQEDPPAG--VSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEE 65
Query: 64 YPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSP 123
YP +PP V+F++K+FHPNV + G ICLDIL+N WSP + + ++ +I +L+ P P+SP
Sbjct: 66 YPNKPPTVKFISKMFHPNV-YADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSP 124
Query: 124 LNC 126
N
Sbjct: 125 ANS 127
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 114 bits (284), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 81/128 (63%), Gaps = 7/128 (5%)
Query: 4 SRARLFKEYKEVQREKSADPDIQLVC--DDSNIFKWTALIKGPSETPYEGGVFQLAFAVP 61
+R RL +++K +Q DP + + ++NI +W A+I GP TP+E G F+L
Sbjct: 5 ARRRLMRDFKRLQE----DPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 62 EQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPD 121
E+YP +PP VRFL+K+FHPNV + G ICLDIL+N WSP + + S+ +I +L+ P P+
Sbjct: 61 EEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPN 119
Query: 122 SPLNCDSG 129
SP N +
Sbjct: 120 SPANSQAA 127
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 114 bits (284), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 76/118 (64%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE +++QR+ A V DD +F W A I GPS++PY+GGVF L P YP
Sbjct: 10 RIQKELQDLQRDPPAQCSAGPVGDD--LFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPF 67
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP+V F TKI+HPN++ G ICLDIL++ WSPA T+ V +I +L+ P PD PL
Sbjct: 68 KPPKVAFTTKIYHPNIN-SNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPL 124
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 113 bits (282), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 80/121 (66%), Gaps = 3/121 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE + + E P I+ D+SN + +I GP ++P+EGG F+L +PE+YP+
Sbjct: 12 RIIKETQRLLAEPV--PGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 69
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNC 126
P+VRF+TKI+HPNV K G ICLDILK+ WSPA +++V +I AL++ P PD PL
Sbjct: 70 AAPKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAN 128
Query: 127 D 127
D
Sbjct: 129 D 129
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 113 bits (282), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 80/121 (66%), Gaps = 3/121 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE + + E P I+ D+SN + +I GP ++P+EGG F+L +PE+YP+
Sbjct: 10 RIIKETQRLLAEPV--PGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 67
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNC 126
P+VRF+TKI+HPNV K G ICLDILK+ WSPA +++V +I AL++ P PD PL
Sbjct: 68 AAPKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAN 126
Query: 127 D 127
D
Sbjct: 127 D 127
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 113 bits (282), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 80/121 (66%), Gaps = 3/121 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE + + E P I+ D+SN + +I GP ++P+EGG F+L +PE+YP+
Sbjct: 7 RIIKETQRLLAEPV--PGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 64
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNC 126
P+VRF+TKI+HPNV K G ICLDILK+ WSPA +++V +I AL++ P PD PL
Sbjct: 65 AAPKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAN 123
Query: 127 D 127
D
Sbjct: 124 D 124
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 113 bits (282), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 80/121 (66%), Gaps = 3/121 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE + + E P I+ D+SN + +I GP ++P+EGG F+L +PE+YP+
Sbjct: 9 RIIKETQRLLAEPV--PGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 66
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNC 126
P+VRF+TKI+HPNV K G ICLDILK+ WSPA +++V +I AL++ P PD PL
Sbjct: 67 AAPKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAN 125
Query: 127 D 127
D
Sbjct: 126 D 126
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 112 bits (281), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 80/121 (66%), Gaps = 3/121 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE + + E P I+ D+SN + +I GP ++P+EGG F+L +PE+YP+
Sbjct: 5 RIIKETQRLLAEPV--PGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 62
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNC 126
P+VRF+TKI+HPNV K G ICLDILK+ WSPA +++V +I AL++ P PD PL
Sbjct: 63 AAPKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAN 121
Query: 127 D 127
D
Sbjct: 122 D 122
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 77/119 (64%), Gaps = 3/119 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE +E+Q++ + V DD IF WTA I GP ++PY+GG+F L P YP
Sbjct: 8 RIQKELREIQQDPPCNCSAGPVGDD--IFHWTATITGPDDSPYQGGLFFLDVHFPVDYPF 65
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLN 125
+ P+V F+TK++HPN++ K G ICLDILK+ WSPA TL V +I +L+ P P PL+
Sbjct: 66 KAPRVTFMTKVYHPNIN-KNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLD 123
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 75/123 (60%), Gaps = 3/123 (2%)
Query: 2 QASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVP 61
Q + R+ KE ++ ++ + V DD +F W A I GP ++PY GGVF L P
Sbjct: 20 QGALKRINKELNDLSKDPPTNCSAGPVGDD--MFHWQATIMGPEDSPYSGGVFFLNIHFP 77
Query: 62 EQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPD 121
YP +PP+V F TKI+HPN++ + G ICLDILK+ WSPA T+ V +I +L+ P PD
Sbjct: 78 SDYPFKPPKVNFTTKIYHPNINSQ-GAICLDILKDQWSPALTISKVLLSISSLLTDPNPD 136
Query: 122 SPL 124
PL
Sbjct: 137 DPL 139
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Query: 7 RLFKEYKEV-QREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYP 65
R+ +E+KEV + E+++ I++ D N + I GP +TPYEGG +QL +PE YP
Sbjct: 25 RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 84
Query: 66 LQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLN 125
PP+VRF+TKI+HPN+ TG ICLDILK+ W+ A TL++V ++ AL+A EPD P +
Sbjct: 85 FNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQD 144
Query: 126 C 126
Sbjct: 145 A 145
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Query: 7 RLFKEYKEV-QREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYP 65
R+ +E+KEV + E+++ I++ D N + I GP +TPYEGG +QL +PE YP
Sbjct: 61 RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 120
Query: 66 LQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLN 125
PP+VRF+TKI+HPN+ TG ICLDILK+ W+ A TL++V ++ AL+A EPD P +
Sbjct: 121 FNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQD 180
Query: 126 C 126
Sbjct: 181 A 181
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE ++ R+ A V DD +F W A I GP+++PY+GGVF L P YP
Sbjct: 15 RIHKELNDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 72
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP+V F T+I+HPN++ G ICLDIL++ WSPA T+ V +I +L+ P PD PL
Sbjct: 73 KPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 129
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE ++ R+ A V DD +F W A I GP+++PY+GGVF L P YP
Sbjct: 10 RIHKELNDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 67
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP+V F T+I+HPN++ G ICLDIL++ WSPA T+ V +I +L+ P PD PL
Sbjct: 68 KPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 124
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE ++ R+ A V DD +F W A I GP+++PY+GGVF L P YP
Sbjct: 23 RIHKELNDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 80
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP+V F T+I+HPN++ G ICLDIL++ WSPA T+ V +I +L+ P PD PL
Sbjct: 81 KPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 137
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE ++ R+ A V DD +F W A I GP+++PY+GGVF L P YP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP+V F T+I+HPN++ G ICLDIL++ WSPA T+ V +I +L+ P PD PL
Sbjct: 65 KPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 121
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE ++ R+ A V DD +F W A I GP+++PY+GGVF L P YP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP+V F T+I+HPN++ G ICLDIL++ WSPA T+ V +I +L+ P PD PL
Sbjct: 65 KPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 121
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Query: 7 RLFKEYKEV-QREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYP 65
R+ +E+KEV + E+++ I++ D N + I GP +TPYEGG +QL +PE YP
Sbjct: 10 RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 69
Query: 66 LQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLN 125
PP+VRF+TKI+HPN+ TG ICLDILK+ W+ A TL++V ++ AL+A EPD P +
Sbjct: 70 FNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQD 129
Query: 126 C 126
Sbjct: 130 A 130
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Query: 7 RLFKEYKEV-QREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYP 65
R+ +E+KEV + E+++ I++ D N + I GP +TPYEGG +QL +PE YP
Sbjct: 9 RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 68
Query: 66 LQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLN 125
PP+VRF+TKI+HPN+ TG ICLDILK+ W+ A TL++V ++ AL+A EPD P +
Sbjct: 69 FNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQD 128
Query: 126 C 126
Sbjct: 129 A 129
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Query: 7 RLFKEYKEV-QREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYP 65
R+ +E+KEV + E+++ I++ D N + I GP +TPYEGG +QL +PE YP
Sbjct: 12 RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 71
Query: 66 LQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLN 125
PP+VRF+TKI+HPN+ TG ICLDILK+ W+ A TL++V ++ AL+A EPD P +
Sbjct: 72 FNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQD 131
Query: 126 C 126
Sbjct: 132 A 132
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE ++ R+ A V DD +F W A I GP+++PY+GGVF L P YP
Sbjct: 5 RIHKELNDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP+V F T+I+HPN++ G ICLDIL++ WSPA T+ V +I +L+ P PD PL
Sbjct: 63 KPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 119
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 77/124 (62%), Gaps = 3/124 (2%)
Query: 1 MQASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAV 60
+ ++ R+ KE ++ R+ A V DD +F W A I GP+++PY+GGVF L
Sbjct: 1 LGSALKRINKELSDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHF 58
Query: 61 PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120
P YP +PP+V F T+I+HPN++ G ICLDIL++ WSPA T+ V +I +L+ P P
Sbjct: 59 PTDYPFKPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 117
Query: 121 DSPL 124
D PL
Sbjct: 118 DDPL 121
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE ++ R+ A V DD +F W A I GP+++PY+GGVF L P YP
Sbjct: 15 RINKELSDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 72
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP+V F T+I+HPN++ G ICLDIL++ WSPA T+ V +I +L+ P PD PL
Sbjct: 73 KPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 129
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 109 bits (273), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE ++ R+ A V DD +F W A I GP+++PY+GGVF L P YP
Sbjct: 13 RINKELSDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 70
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP+V F T+I+HPN++ G ICLDIL++ WSPA T+ V +I +L+ P PD PL
Sbjct: 71 KPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 127
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 109 bits (273), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE ++ R+ A V DD +F W A I GP+++PY+GGVF L P YP
Sbjct: 4 RINKELSDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 61
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP+V F T+I+HPN++ G ICLDIL++ WSPA T+ V +I +L+ P PD PL
Sbjct: 62 KPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 118
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 109 bits (273), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 81/136 (59%), Gaps = 15/136 (11%)
Query: 5 RARLFKEY---KEVQREKSADP----------DIQLVCDDSNIFKWTALIKGPSETPYEG 51
+ARL KE +++QR ++P Q+V D I +W I GP TPYEG
Sbjct: 34 QARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGD--IHRWRGFIAGPLGTPYEG 91
Query: 52 GVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAI 111
G F L +P YP PP+++F+TKI+HPN+ +TG ICLDILK+ WSPA T+++ +I
Sbjct: 92 GHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSI 151
Query: 112 IALMAHPEPDSPLNCD 127
A++A P P P + +
Sbjct: 152 QAMLADPVPTDPQDAE 167
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 109 bits (273), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE +++ R+ A V DD +F W A I GP E+PY+GGVF L P YP
Sbjct: 8 RIQKELQDLGRDPPAQCSAGPVGDD--LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPF 65
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP+V F T+I+HPN++ G ICLDIL++ WSPA T+ V +I +L+ P PD PL
Sbjct: 66 KPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 122
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 109 bits (272), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 80/125 (64%), Gaps = 2/125 (1%)
Query: 4 SRA-RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPE 62
SRA R+ KE + V+ + +A ++ V + S+I GP TPYEGG F + VP
Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSE-SDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 59
Query: 63 QYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDS 122
+YP +PP+++F TK++HPN+ TG ICLDILKNAWSP TL+S ++ AL+ PEP+
Sbjct: 60 EYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPND 119
Query: 123 PLNCD 127
P + +
Sbjct: 120 PQDAE 124
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 109 bits (272), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 81/126 (64%), Gaps = 2/126 (1%)
Query: 3 ASRA-RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVP 61
+SRA R+ KE + V+ + +A ++ V + S+I GP TPYEGG F + VP
Sbjct: 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSE-SDIHHLKGTFLGPPGTPYEGGKFVVDIEVP 59
Query: 62 EQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPD 121
+YP +PP+++F TK++HPN+ TG ICLDIL+NAWSP TL+S ++ AL+ PEP+
Sbjct: 60 MEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPN 119
Query: 122 SPLNCD 127
P + +
Sbjct: 120 DPQDAE 125
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 108 bits (271), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 3/122 (2%)
Query: 3 ASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPE 62
+S R+ KE +++R+ V DD ++ W A I GP+++PY GGVF L+ P
Sbjct: 2 SSSKRIAKELSDLERDPPTSCSAGPVGDD--LYHWQASIMGPADSPYAGGVFFLSIHFPT 59
Query: 63 QYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDS 122
YP +PP++ F TKI+HPN++ G ICLDILK+ WSPA TL V +I +L+ PD
Sbjct: 60 DYPFKPPKISFTTKIYHPNIN-ANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDD 118
Query: 123 PL 124
PL
Sbjct: 119 PL 120
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 108 bits (271), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE ++ R+ A V DD +F W A I GP+++PY+GGVF L P YP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP+V F T+I+HPN++ G ICLDIL++ W PA T+ V +I +L+ P PD PL
Sbjct: 65 KPPKVAFTTRIYHPNIN-SNGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPL 121
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ +E ++ ++ + V DD +F W A I GP+++PY GGVF L+ P YP
Sbjct: 5 RINRELADLGKDPPSSSSAGPVGDD--LFHWQATIMGPADSPYAGGVFFLSIHFPTDYPF 62
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP+V F T+I+HPN++ G ICLDIL++ WSPA T+ V +I +L+ P PD PL
Sbjct: 63 KPPKVNFTTRIYHPNIN-SNGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPL 119
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE ++ R+ A V DD +F W A I GP+++PY+GGVF L P YP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP+V F T+I+HPN++ G ICLD L++ WSPA T+ V +I +L+ P PD PL
Sbjct: 65 KPPKVAFTTRIYHPNIN-SNGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPL 121
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE ++ R+ A V DD +F W A GP+++PY+GGVF L P YP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDD--MFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP+V F T+I+HPN++ G ICLDIL++ WSPA T+ V +I +L+ P PD PL
Sbjct: 65 KPPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 121
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 76/124 (61%), Gaps = 3/124 (2%)
Query: 1 MQASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAV 60
++ + R+ KE ++QR+ A V DD +F W A I GP ++ Y+GGVF L
Sbjct: 5 LEMALKRIQKELSDLQRDPPAHCSAGPVGDD--LFHWQATIMGPPDSAYQGGVFFLTVHF 62
Query: 61 PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120
P YP +PP++ F TKI+HPN++ G ICLDIL++ WSPA T+ V +I +L+ P P
Sbjct: 63 PTDYPFKPPKIAFTTKIYHPNIN-SNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNP 121
Query: 121 DSPL 124
D PL
Sbjct: 122 DDPL 125
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 74/121 (61%), Gaps = 3/121 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE ++QR+ A V DD +F W A I GP ++ Y+GGVF L P YP
Sbjct: 23 RIQKELSDLQRDPPAHCSAGPVGDD--LFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 80
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNC 126
+PP++ F TKI+HPN++ G ICLDIL++ WSPA T+ V +I +L+ P PD PL
Sbjct: 81 KPPKIAFTTKIYHPNIN-SNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVP 139
Query: 127 D 127
D
Sbjct: 140 D 140
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE ++QR+ A V DD +F W A I GP ++ Y+GGVF L P YP
Sbjct: 7 RIQKELSDLQRDPPAHCSAGPVGDD--LFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 64
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP++ F TKI+HPN++ G ICLDIL++ WSPA T+ V +I +L+ P PD PL
Sbjct: 65 KPPKIAFTTKIYHPNIN-SNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPL 121
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE ++ R+ A V DD +F W A I GP+++PY+GGVF L P YP
Sbjct: 8 RIHKELNDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 65
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP+V F T+I+HPN++ G I LDIL++ WSPA T+ V +I +L+ P PD PL
Sbjct: 66 KPPKVAFTTRIYHPNIN-SNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 122
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE ++ R+ A V DD +F W A I GP+++PY+GGVF L P YP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP+V F T+I+HPN++ G I LDIL++ WSPA T+ V +I +L+ P PD PL
Sbjct: 65 KPPKVAFTTRIYHPNIN-SNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 121
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 106 bits (265), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 80/127 (62%), Gaps = 3/127 (2%)
Query: 1 MQASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAV 60
M + R+ KE +++ + P I D N+ + I+GP ++PYE G+F+L +
Sbjct: 1 MASLPKRIIKETEKLVSDPV--PGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYL 58
Query: 61 PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120
P+ YP++ P+VRFLTKI+HPN+ + G ICLD+LK WSPA +++V +I AL+A P P
Sbjct: 59 PDDYPMEAPKVRFLTKIYHPNID-RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNP 117
Query: 121 DSPLNCD 127
+ PL D
Sbjct: 118 NDPLAND 124
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 106 bits (264), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Query: 23 PDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNV 82
P I D N+ + I+GP ++PYE G+F+L +P+ YP++ P+VRFLTKI+HPN+
Sbjct: 23 PGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI 82
Query: 83 HFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCD 127
+ G ICLD+LK WSPA +++V +I AL+A P P+ PL D
Sbjct: 83 D-RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 126
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 106 bits (264), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE ++ R+ A V DD +F W A I GP+++PY+GGVF L P YP
Sbjct: 23 RIHKELNDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 80
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP+V F T+I+HPN++ G I LDIL++ WSPA T+ V +I +L+ P PD PL
Sbjct: 81 KPPKVAFTTRIYHPNIN-SNGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 137
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 106 bits (264), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE ++ R+ A V DD +F W A I GP+++PY+GGVF L P YP
Sbjct: 5 RINKELSDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP+V F T+I+HPN++ G I LDIL++ WSPA T+ V +I +L+ P PD PL
Sbjct: 63 KPPKVAFTTRIYHPNIN-SNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 119
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE ++ R+ A V DD +F W A I GP+++PY+GGVF L P YP
Sbjct: 4 RIHKELNDLARDPPAQCSAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 61
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP+V F T+I+HPN++ G I LDIL++ WSPA + V +I +L+ P PD PL
Sbjct: 62 KPPKVAFTTRIYHPNIN-SNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPL 118
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 23 PDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNV 82
P I D N+ + I+GP ++PYE G+F+L +P+ YP++ P+VRFLTKI+HPN+
Sbjct: 21 PGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI 80
Query: 83 HFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCD 127
+ G I LD+LK WSPA +++V +I AL+A P P+ PL D
Sbjct: 81 D-RLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 124
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 103 bits (256), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE ++ R+ A V DD +F W A I GP+++PY+GGVF L P YP
Sbjct: 5 RIHKELNDLARDPPAQCRAGPVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP+V F T+I+HP ++ G I LDIL++ WSPA T+ V +I +L+ P PD PL
Sbjct: 63 KPPKVAFTTRIYHPAIN-SNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 119
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 102 bits (254), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL 66
R+ KE ++QR+ A V DD +F W A I GP ++ Y+GGVF L P YP
Sbjct: 11 RIQKELSDLQRDPPAHCRAGPVGDD--LFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 67 QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNC 126
+PP++ F TKI+HPN++ G I LDIL++ WSPA T+ V +I +L+ P PD PL
Sbjct: 69 KPPKIAFTTKIYHPNIN-SNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVP 127
Query: 127 D 127
D
Sbjct: 128 D 128
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 6 ARLFKEYKEVQREKSADPDIQLV----------CDDSNIFKWTALIKGPSETPYEGGVFQ 55
+R+ KEYK + + ++D I D++++ KW A+I GPS+TPYE F+
Sbjct: 9 SRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFR 68
Query: 56 LAFAVPEQYPLQPPQVRFL-TKIFHPNVHFKTGEICLDILK-NAWSPAWTLQSVCRAIIA 113
+ VP YP+ PP++ F+ I H NV TGEICL+ILK W+P W L A+
Sbjct: 69 ILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWR 128
Query: 114 LMAHPEPDSPLNCDSG 129
L+ P DSPL+ D G
Sbjct: 129 LLREPVSDSPLDVDIG 144
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 23 PDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNV 82
P I D N+ + I+GP ++PYE G+F+L +P+ YP++ P+VRFLTKI+HP +
Sbjct: 21 PGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAI 80
Query: 83 HFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCD 127
+ G I LD+LK WSPA +++V +I AL+A P P+ PL D
Sbjct: 81 D-RLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 124
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 6 ARLFKEYKEVQREKSADPDIQLV----------CDDSNIFKWTALIKGPSETPYEGGVFQ 55
+R+ KEYK + + ++D I D++++ KW A+I GPS+TPYE F+
Sbjct: 9 SRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFR 68
Query: 56 LAFAVPEQYPLQPPQVRFL-TKIFHPNVHFKTGEICLDILK-NAWSPAWTLQSVCRAIIA 113
+ VP YP+ PP++ F+ I H NV TGEICL+ILK W+P W L A+
Sbjct: 69 ILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWR 128
Query: 114 LMAHPEPDSPLNCDSG 129
L+ P DSPL+ D G
Sbjct: 129 LLREPVCDSPLDVDIG 144
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 6 ARLFKEYKEVQREKSADPDIQLV----------CDDSNIFKWTALIKGPSETPYEGGVFQ 55
+R+ KEYK + + ++D I D++++ KW A+I GPS+TPYE F+
Sbjct: 9 SRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFR 68
Query: 56 LAFAVPEQYPLQPPQVRFL-TKIFHPNVHFKTGEICLDILK-NAWSPAWTLQSVCRAIIA 113
+ VP YP+ PP++ F+ I H NV TGEICL+ILK W+P W L A+
Sbjct: 69 ILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWR 128
Query: 114 LMAHPEPDSPLNCDSG 129
L+ P DSPL+ D G
Sbjct: 129 LLREPVCDSPLDVDIG 144
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 96.7 bits (239), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 67/114 (58%), Gaps = 7/114 (6%)
Query: 20 SADPDIQLVC--DDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKI 77
+ +P + C D + A I G + TPYE GVF+L +PE+YP +PPQ+RFLT I
Sbjct: 17 ATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPI 76
Query: 78 FHPNVHFKTGEICLDIL----KNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCD 127
+HPN+ G ICLD+L K AW P+ + +V +I LM+ P PD PL D
Sbjct: 77 YHPNID-SAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMAD 129
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 96.7 bits (239), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 20 SADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFH 79
S DP I D N+FKW A + GP +T YE ++L P YP +PP V+F T +H
Sbjct: 24 SGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWH 83
Query: 80 PNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSG-MWT 132
PNV ++G ICLDILK W+ ++ ++++ ++ +L+ P SPLN + MW+
Sbjct: 84 PNVD-QSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS 136
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 95.9 bits (237), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 73/114 (64%), Gaps = 14/114 (12%)
Query: 28 VCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTG 87
+ DD+++++W LI GP +T YEGGVF+ P+ YPL+PP+++F+T+I+HPNV K G
Sbjct: 41 LIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVD-KNG 99
Query: 88 EICLDIL-------------KNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDS 128
++C+ IL + W P T++++ ++I+++A P DSP N D+
Sbjct: 100 DVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDA 153
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 4/134 (2%)
Query: 12 YKEVQREKSADPD-IQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQ 70
YKEV + PD I++ ++ ++ I+GP TPY GG+F++ + + +P PP+
Sbjct: 19 YKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPK 78
Query: 71 VRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGM 130
FLTKIFHPNV GEIC+++LK W+ ++ V I L+ HP P+S LN ++G
Sbjct: 79 GYFLTKIFHPNVG-ANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGR 137
Query: 131 WTLFWYRLVEFISR 144
L Y E+ +R
Sbjct: 138 LLLENYE--EYAAR 149
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 89.7 bits (221), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 12/152 (7%)
Query: 1 MQASRARLFKEYKEVQREKSAD-PDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFA 59
M ASR RL KE +E+++ + +IQ+ D++N+ W LI P PY+ G F++
Sbjct: 1 MAASR-RLMKELEEIRKCGMKNFRNIQV--DEANLLTWQGLI-VPDNPPYDKGAFRIEIN 56
Query: 60 VPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILK-NAWSPAWTLQSVCRAIIALMAHP 118
P +YP +PP++ F TKI+HPN+ K G++CL ++ W PA V +++IAL+ P
Sbjct: 57 FPAEYPFKPPKITFKTKIYHPNIDEK-GQVCLPVISAENWKPATKTDQVIQSLIALVNDP 115
Query: 119 EPDSPLNCD-----SGMWTLFWYRLVEFISRY 145
+P+ PL D S F EF +Y
Sbjct: 116 QPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 89.4 bits (220), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 12/152 (7%)
Query: 1 MQASRARLFKEYKEVQREKSAD-PDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFA 59
M ASR RL KE +E+++ + +IQ+ D++N+ W LI P PY+ G F++
Sbjct: 3 MAASR-RLMKELEEIRKCGMKNFRNIQV--DEANLLTWQGLI-VPDNPPYDKGAFRIEIN 58
Query: 60 VPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILK-NAWSPAWTLQSVCRAIIALMAHP 118
P +YP +PP++ F TKI+HPN+ K G++CL ++ W PA V +++IAL+ P
Sbjct: 59 FPAEYPFKPPKITFKTKIYHPNIDEK-GQVCLPVISAENWKPATKTDQVIQSLIALVNDP 117
Query: 119 EPDSPLNCD-----SGMWTLFWYRLVEFISRY 145
+P+ PL D S F EF +Y
Sbjct: 118 QPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 149
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 2 QASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVP 61
S R+ KE E+ + P+ NI++W + I GP + YEGGVF L
Sbjct: 2 STSAKRIQKELAEITLDPP--PNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFS 59
Query: 62 EQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPD 121
YP +PP+V F T+I+H N++ + G ICLDILK+ WSPA T+ V +I +L+ P
Sbjct: 60 PDYPFKPPKVTFRTRIYHCNINSQ-GVICLDILKDNWSPALTISKVLLSICSLLTDCNPA 118
Query: 122 SPL 124
PL
Sbjct: 119 DPL 121
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 66/109 (60%), Gaps = 6/109 (5%)
Query: 43 GPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAW 102
GP TPYEGGV+++ +P++YP + P + F+ KIFHPN+ +G +CLD++ W+ +
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118
Query: 103 TLQSVCRAII-ALMAHPEPDSPLNCDSGMWTL-----FWYRLVEFISRY 145
L ++ + + L+A+P P PLN D+ L + ++ E+I +Y
Sbjct: 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKY 167
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 1 MQASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAV 60
+ S R+ KE ++ + P+ NI++W + I GP + YEGGVF L
Sbjct: 46 LSTSAKRIQKELADITLD--PPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITF 103
Query: 61 PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120
+YP +PP+V F T+I+H N++ + G ICLDILK+ WSPA T+ V +I +L+ P
Sbjct: 104 TPEYPFKPPKVTFRTRIYHCNINSQ-GVICLDILKDNWSPALTISKVLLSICSLLTDCNP 162
Query: 121 DSPL 124
PL
Sbjct: 163 ADPL 166
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 68/115 (59%), Gaps = 14/115 (12%)
Query: 28 VCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTG 87
+ DD++I+KW L+ GP +T YEGG F+ P YP +PP+++F+++I+HPN+ K G
Sbjct: 27 LVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNID-KEG 85
Query: 88 EICLDILKN-------------AWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSG 129
+C+ IL + W P T++++ ++I+++ P +SP N D+
Sbjct: 86 NVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAA 140
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 86.3 bits (212), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 3 ASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPE 62
+S+ L E K +Q E + LV D+ +++ W I GP T YEGG F+ P
Sbjct: 4 SSQKALLLELKGLQEEPVEGFRVTLV-DEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPI 62
Query: 63 QYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-------------KNAWSPAWTLQSVCR 109
YP PP RFLTK++HPN+ ++TG++C+ IL W+P ++++
Sbjct: 63 DYPYSPPAFRFLTKMWHPNI-YETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILL 121
Query: 110 AIIALMAHPEPDSPLNCDSGMWTLFW 135
++I+L+ P SP N D+ + W
Sbjct: 122 SVISLLNEPNTFSPANVDASVMYRKW 147
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 86.3 bits (212), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 15/146 (10%)
Query: 3 ASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPE 62
+S+ L E K +Q E + LV D+ +++ W I GP T YEGG F+ P
Sbjct: 7 SSQKALLLELKGLQEEPVEGFRVTLV-DEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPI 65
Query: 63 QYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-------------KNAWSPAWTLQSVCR 109
YP PP RFLTK++HPN+ ++TG++C+ IL W+P ++++
Sbjct: 66 DYPYSPPAFRFLTKMWHPNI-YETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILL 124
Query: 110 AIIALMAHPEPDSPLNCDSGMWTLFW 135
++I+L+ P SP N D+ + W
Sbjct: 125 SVISLLNEPNTFSPANVDASVMYRKW 150
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 85.9 bits (211), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 68/129 (52%), Gaps = 5/129 (3%)
Query: 20 SADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFH 79
S D I + N+FKW I G + T YE ++L+ P YP P V+FLT +H
Sbjct: 45 SGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYH 104
Query: 80 PNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSG-MW---TLFW 135
PNV + G I LDILK WS + ++++ +I +L+ P DSPLN + +W T F
Sbjct: 105 PNVDTQ-GNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFK 163
Query: 136 YRLVEFISR 144
L E S+
Sbjct: 164 KYLQETYSK 172
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 22/142 (15%)
Query: 7 RLFKEYKEVQREKSADPDIQLVC---DDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQ 63
RL EYK++ + +P +V ++ N F+W ALI GP +T +E GVF + P
Sbjct: 11 RLMAEYKQL----TLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLD 66
Query: 64 YPLQPPQVRFLTKIFHPNVHFKTGEICLDILK-------------NAWSPAWTLQSVCRA 110
YPL PP++RF ++FHPN+ + G +C+ IL WSP +++ + +
Sbjct: 67 YPLSPPKMRFTCEMFHPNI-YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLS 125
Query: 111 IIALMAHPEPDSPLNCD-SGMW 131
+++++A P +S N D S MW
Sbjct: 126 VVSMLAEPNDESGANVDASKMW 147
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 22/142 (15%)
Query: 7 RLFKEYKEVQREKSADPDIQLVC---DDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQ 63
RL EYK++ + +P +V ++ N F+W ALI GP +T +E GVF + P
Sbjct: 13 RLMAEYKQL----TLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLD 68
Query: 64 YPLQPPQVRFLTKIFHPNVHFKTGEICLDILK-------------NAWSPAWTLQSVCRA 110
YPL PP++RF ++FHPN+ + G +C+ IL WSP +++ + +
Sbjct: 69 YPLSPPKMRFTCEMFHPNI-YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLS 127
Query: 111 IIALMAHPEPDSPLNCD-SGMW 131
+++++A P +S N D S MW
Sbjct: 128 VVSMLAEPNDESGANVDASKMW 149
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 22/142 (15%)
Query: 7 RLFKEYKEVQREKSADPDIQLVC---DDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQ 63
RL EYK++ + +P +V ++ N F+W ALI GP +T +E GVF + P
Sbjct: 7 RLMAEYKQL----TLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLD 62
Query: 64 YPLQPPQVRFLTKIFHPNVHFKTGEICLDILK-------------NAWSPAWTLQSVCRA 110
YPL PP++RF ++FHPN+ + G +C+ IL WSP +++ + +
Sbjct: 63 YPLSPPKMRFTCEMFHPNI-YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLS 121
Query: 111 IIALMAHPEPDSPLNCD-SGMW 131
+++++A P +S N D S MW
Sbjct: 122 VVSMLAEPNDESGANVDASKMW 143
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 22/142 (15%)
Query: 7 RLFKEYKEVQREKSADPDIQLVC---DDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQ 63
RL EYK++ + +P +V ++ N F+W ALI GP +T +E GVF + P
Sbjct: 10 RLMAEYKQL----TLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLD 65
Query: 64 YPLQPPQVRFLTKIFHPNVHFKTGEICLDILK-------------NAWSPAWTLQSVCRA 110
YPL PP++RF ++FHPN+ + G +C+ IL WSP +++ + +
Sbjct: 66 YPLSPPKMRFTCEMFHPNI-YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLS 124
Query: 111 IIALMAHPEPDSPLNCD-SGMW 131
+++++A P +S N D S MW
Sbjct: 125 VVSMLAEPNDESGANVDASKMW 146
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 26 QLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFK 85
L ++ + + + GP+ T YEGG++++ +P+ YP P + F+ K+ HPNV
Sbjct: 20 DLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEA 79
Query: 86 TGEICLDILKNAWSPAWTLQSVCRAII-ALMAHPEPDSPLNCDSG 129
+G +CLD++ W+P ++L +V + L+ +P P PLN D+
Sbjct: 80 SGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAA 124
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 76/140 (54%), Gaps = 15/140 (10%)
Query: 2 QASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVP 61
+ ++ RL KE +++ ++ S + ++NIF W LI+GP +TPY GVF P
Sbjct: 3 KTAQKRLLKELQQLIKD-SPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFP 61
Query: 62 EQYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-------------KNAWSPAWTLQSVC 108
+ YPL PP++ F I HPN+ + GE+C+ IL + WSP +++ +
Sbjct: 62 KDYPLSPPKLTFTPSILHPNI-YPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKIL 120
Query: 109 RAIIALMAHPEPDSPLNCDS 128
+++++++ P +S N D+
Sbjct: 121 LSVMSMLSEPNIESGANIDA 140
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 79.7 bits (195), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 80/152 (52%), Gaps = 22/152 (14%)
Query: 5 RARLFKEYKEVQRE----------KSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVF 54
+ RL +E K+ +R+ KS+D + L+ W I G +T +EGG++
Sbjct: 12 KTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLM-------NWKVGIPGKPKTSWEGGLY 64
Query: 55 QLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL--KNAWSPAWTLQSVCRAII 112
+L A PE+YP +PP+ RF +FHPNV + +G +CL IL + W PA T++ + I
Sbjct: 65 KLTMAFPEEYPTRPPKCRFTPPLFHPNV-YPSGTVCLSILNEEEGWKPAITIKQILLGIQ 123
Query: 113 ALMAHPEPDSPLNCDSGMWTLFWYRLVEFISR 144
L+ P SP ++ +T+F VE+ R
Sbjct: 124 DLLDDPNIASPAQTEA--YTMFKKDKVEYEKR 153
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 40 LIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWS 99
+I P E Y G E YP++PP+V L KIFHPN+ K G +CL+IL+ WS
Sbjct: 68 VIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLK-GNVCLNILREDWS 126
Query: 100 PAWTLQSVCRAIIALMAHPEPDSPLNCDSG 129
PA LQS+ ++ L P P+ PLN D+
Sbjct: 127 PALDLQSIITGLLFLFLEPNPNDPLNKDAA 156
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 41 IKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 100
KGP TPYE G + L +P YP + P + F +I HPNV ++G +CLD++ W+P
Sbjct: 44 FKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTP 103
Query: 101 AWTLQSVCRAII-ALMAHPEPDSPLNCDSG 129
+ L+++ + L+ +P P PLN +
Sbjct: 104 MYQLENIFDVFLPQLLRYPNPSDPLNVQAA 133
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 11/146 (7%)
Query: 7 RLFKEYKEVQREKSADPDIQ-LVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYP 65
R+ KE +++Q K P ++ L DD+N+ W AL+ P + PY F L + P +YP
Sbjct: 5 RVVKELEDLQ--KKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYP 61
Query: 66 LQPPQVRFLTKIFHPNVHFKTGEICLDILKNA-WSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP ++F TKI+HPNV + G+ICL I+ + W P V A+ L+ P PL
Sbjct: 62 FKPPMIKFTTKIYHPNVD-ENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPL 120
Query: 125 NCD-SGMWT----LFWYRLVEFISRY 145
D + + T LF EF R+
Sbjct: 121 RMDLADLLTQNPELFRKNAEEFTLRF 146
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 11/146 (7%)
Query: 7 RLFKEYKEVQREKSADPDIQ-LVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYP 65
R+ KE +++Q K P ++ L DD+N+ W AL+ P + PY F L + P +YP
Sbjct: 8 RVVKELEDLQ--KKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYP 64
Query: 66 LQPPQVRFLTKIFHPNVHFKTGEICLDILKNA-WSPAWTLQSVCRAIIALMAHPEPDSPL 124
+PP ++F TKI+HPNV + G+ICL I+ + W P V A+ L+ P PL
Sbjct: 65 FKPPMIKFTTKIYHPNVD-ENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPL 123
Query: 125 NCD-SGMWT----LFWYRLVEFISRY 145
D + + T LF EF R+
Sbjct: 124 RMDLADLLTQNPELFRKNAEEFTLRF 149
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 3 ASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPE 62
A++ R+ K+ E+ K+ D D ++ + +I P E Y+ G F +F V +
Sbjct: 6 AAQLRIQKDINELNLPKTCDISFS---DPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQ 61
Query: 63 QYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDS 122
YP PP+V+ T ++HPN+ + G +CL+IL+ W P T+ S+ + L P P+
Sbjct: 62 GYPHDPPKVKCETXVYHPNIDLE-GNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPED 120
Query: 123 PLNCDSGMWTLFWYRLVE 140
PLN ++ RL E
Sbjct: 121 PLNKEAAEVLQNNRRLFE 138
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Query: 33 NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLD 92
N+ W I G TP+EGG+F+L + YP PP+ +F +FHPNV + +G +CL
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLS 98
Query: 93 ILK--NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISR 144
IL+ W PA T++ + I L+ P SP ++ +T++ VE+ R
Sbjct: 99 ILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEA--YTIYCQNRVEYEKR 150
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 1 MQASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAV 60
M + + RL KE +Q + + ++I +W ++G T YEG FQL F
Sbjct: 20 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF 79
Query: 61 PEQYPLQPPQVRFLTKIF--HPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMA 116
+YP PQV F + HP+V + G ICL IL WSPA ++QSVC +II++++
Sbjct: 80 SSRYPFDSPQVMFTGENIPVHPHV-YSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Query: 33 NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLD 92
N+ W I G TP+EGG+F+L + YP PP+ +F +FHPNV + +G +CL
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLS 98
Query: 93 ILK--NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISR 144
IL+ W PA T++ + I L+ P +P ++ +T++ VE+ R
Sbjct: 99 ILEEDKDWRPAITIKQILLGIQELLNEPNIQAPAQAEA--YTIYCQNRVEYEKR 150
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 33 NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLD 92
N+ W I G TP+EGG+F+L + YP PP+ +F +FHPNV + +G +CL
Sbjct: 38 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLS 96
Query: 93 ILK--NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISR 144
IL+ W PA T++ + I L+ P P ++ +T++ VE+ R
Sbjct: 97 ILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA--YTIYCQNRVEYEKR 148
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 33 NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLD 92
N+ W I G TP+EGG+F+L + YP PP+ +F +FHPNV + +G +CL
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLS 97
Query: 93 ILK--NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISR 144
IL+ W PA T++ + I L+ P P ++ +T++ VE+ R
Sbjct: 98 ILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA--YTIYCQNRVEYEKR 149
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 33 NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLD 92
N+ W I G TP+EGG+F+L + YP PP+ +F +FHPNV + +G +CL
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLS 98
Query: 93 ILK--NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISR 144
IL+ W PA T++ + I L+ P P ++ +T++ VE+ R
Sbjct: 99 ILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA--YTIYCQNRVEYEKR 150
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 33 NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLD 92
N+ W I G TP+EGG+F+L + YP PP+ +F +FHPNV + +G +CL
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLS 95
Query: 93 ILK--NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISR 144
IL+ W PA T++ + I L+ P P ++ +T++ VE+ R
Sbjct: 96 ILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA--YTIYCQNRVEYEKR 147
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 33 NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLD 92
N+ W I G TP+EGG+F+L + YP PP+ +F +FHPNV + +G +CL
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLS 97
Query: 93 ILK--NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISR 144
IL+ W PA T++ + I L+ P P ++ +T++ VE+ R
Sbjct: 98 ILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA--YTIYCQNRVEYEKR 149
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 33 NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLD 92
N+ W I G TP+EGG+F+L + YP PP+ +F +FHPNV + +G +CL
Sbjct: 42 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLS 100
Query: 93 ILK--NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISR 144
IL+ W PA T++ + I L+ P P ++ +T++ VE+ R
Sbjct: 101 ILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA--YTIYCQNRVEYEKR 152
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 33 NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLD 92
++ KW A I G T + GGV+ + P +YP +PP+V+F +HPNV + +G ICL
Sbjct: 39 DLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNV-YPSGTICLS 97
Query: 93 ILK--NAWSPAWTLQSVCRAIIALMAHPEPDSP 123
IL W PA TL+ + + L+ P P+SP
Sbjct: 98 ILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSP 130
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 33 NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLD 92
++ KW A I G T + GGV+ + P +YP +PP+V+F +HPNV + +G ICL
Sbjct: 37 DLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNV-YPSGTICLS 95
Query: 93 ILK--NAWSPAWTLQSVCRAIIALMAHPEPDSP 123
IL W PA TL+ + + L+ P P+SP
Sbjct: 96 ILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSP 128
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 33 NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLD 92
N+ W I G TP+EGG+F+L + YP PP+ +F +FHPNV +G +CL
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVA-PSGTVCLS 98
Query: 93 ILK--NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISR 144
IL+ W PA T++ + I L+ P P ++ +T++ VE+ R
Sbjct: 99 ILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA--YTIYCQNRVEYEKR 150
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 3 ASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPE 62
A++ R+ K+ E+ K+ D D ++ + +I P E Y+ G F +F V +
Sbjct: 26 AAQLRIQKDINELNLPKTCDISF---SDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQ 81
Query: 63 QYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDS 122
YP PP+V+ T ++HPN+ + G + L+IL+ W P T+ S+ + L P P+
Sbjct: 82 GYPHDPPKVKCETMVYHPNIDLE-GNVALNILREDWKPVLTINSIIYGLQYLFLEPNPED 140
Query: 123 PLNCDSGMWTLFWYRLVE 140
PLN ++ RL E
Sbjct: 141 PLNKEAAEVLQNNRRLFE 158
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 31 DSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEIC 90
D N L P E Y+GG FQ VP+ Y + PP+V+ LTKI+HPN+ +TGEIC
Sbjct: 40 DPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNI-TETGEIC 98
Query: 91 LDILK------NAWSPAWTLQSVCRAIIALMAH-PEPDSPLNCDSGMWTL-----FWYRL 138
L +L+ W+P TL+ V + +L D PLN ++ L F ++
Sbjct: 99 LSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKV 158
Query: 139 VEFISRY 145
++I RY
Sbjct: 159 DDYIKRY 165
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 31 DSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEIC 90
D N L P E Y+GG FQ VP+ Y + PP+V+ LTKI+HPN+ +TGEIC
Sbjct: 40 DPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNI-TETGEIC 98
Query: 91 LDILK------NAWSPAWTLQSVCRAIIALMAH-PEPDSPLNCDSGMWTL-----FWYRL 138
L +L+ W+P TL+ V + +L D PLN ++ L F ++
Sbjct: 99 LSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKV 158
Query: 139 VEFISRYYPS 148
++I RY S
Sbjct: 159 DDYIKRYARS 168
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 33 NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLD 92
N+ W I G TP+EGG+F+L + YP PP+ +F +FHP V + +G +CL
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQV-YPSGTVCLS 98
Query: 93 ILK--NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISR 144
IL+ W PA T++ + I L+ P P ++ +T++ VE+ R
Sbjct: 99 ILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA--YTIYCQNRVEYEKR 150
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Query: 33 NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLD 92
++ +W I+G + ++G VFQL +Y PP V+F+T FHPNV TG+ C+D
Sbjct: 51 DMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCID 110
Query: 93 ILKN--AWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSG 129
L N W+ +TL S+ A+ ++++P ++P+N ++
Sbjct: 111 FLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAA 149
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 33 NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLD 92
N+ W I G TP+EGG+F+L + YP PP+ +F +FHPNV + +G + L
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVSLS 95
Query: 93 ILK--NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISR 144
IL+ W PA T++ + I L+ P P ++ +T++ VE+ R
Sbjct: 96 ILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA--YTIYCQNRVEYEKR 147
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 33 NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLD 92
N+ W I G TP+EGG+F+L + YP PP+ +F +FHPNV + +G + L
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVXLS 95
Query: 93 ILK--NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISR 144
IL+ W PA T++ + I L+ P P ++ +T++ VE+ R
Sbjct: 96 ILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA--YTIYXQNRVEYEKR 147
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 16/121 (13%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDD---SNIFKWTALIKGPSETPYEGGVFQLAFAVPEQ 63
RL ++Y +++ DP + +C + SNI +W +++GP TPYEGG + P +
Sbjct: 18 RLKQDYLRIKK----DP-VPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPRE 72
Query: 64 YPLQPPQVRFLTKIFHPNVHFKTG-EICLDILK---NAWSPAWTLQSVCRAIIALMAHPE 119
+P +PP + +T PN FK +CL I + W+PAW++ ++ +++ M
Sbjct: 73 FPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKG 128
Query: 120 P 120
P
Sbjct: 129 P 129
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 14 EVQREKS---ADPDIQLVCD--DSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQP 68
+Q+E + +P I D SNI W G T Y V+++ P+ YPL+P
Sbjct: 24 RIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKP 83
Query: 69 PQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMA 116
P V FL K + G+ICL +L + ++P+ ++ + +II++++
Sbjct: 84 PIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLS 131
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 30 DDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEI 89
DD + KW I GP + +E ++ L+ YP PP+V F++KI P V+ TGE+
Sbjct: 34 DDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEV 93
Query: 90 CLDILK-NAWSPAWTLQSVCRAIIALMAHP 118
D W A+T++++ + MA P
Sbjct: 94 QTDFHTLRDWKRAYTMETLLLDLRKEMATP 123
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 32 SNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICL 91
+NI W G T Y V++L P+ YPL+PP V FL K + G+ICL
Sbjct: 33 NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICL 92
Query: 92 DILKNAWSPAWTLQSVCRAIIALMA 116
+L + ++P+ ++ + +II++++
Sbjct: 93 SLLGDDYNPSLSISGLVLSIISMLS 117
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 30 DDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEI 89
DD + KW I GP + +E ++ L+ YP PP+V F++KI P V+ TGE+
Sbjct: 35 DDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEV 94
Query: 90 CLDILK-NAWSPAWTLQSVCRAIIALMAHP 118
D W A+T++++ + MA P
Sbjct: 95 QTDFHTLRDWKRAYTMETLLLDLRKEMATP 124
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 4 SRARLFKEYKEVQREKSADPDIQ----------LVCDDSNIFKWTALIKGPSETPY--EG 51
S R+ K+ K + E A+ + D I+ W +K P+++ Y G
Sbjct: 9 SNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAG 68
Query: 52 GVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAI 111
+QL+ + YP +PP VRF+T ++ P V + G IC ++ + W+P V + +
Sbjct: 69 NTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGG-ICDRMVNDFWTPDQHASDVIKLV 127
Query: 112 I 112
+
Sbjct: 128 L 128
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 29 CDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTK-----IFHPNVH 83
CD+ + LI GP++TPY G F+ P+ YP PP V T F+PN+
Sbjct: 104 CDEERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNL- 162
Query: 84 FKTGEICLDILKNAW 98
+ G++CL IL N W
Sbjct: 163 YNDGKVCLSIL-NTW 176
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDS---NIFKWTALIKGPSETPYEGGVFQLAFAVPEQ 63
RL +E +E Q+ D + +D + +WT +I GP T YE ++ L +
Sbjct: 14 RLLEELEEGQK-GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPK 72
Query: 64 YPLQPPQVRFLTKIFHPNVHFKTGEI---CLDILKNAWSPAWTLQSVCRAIIALMAHPE 119
YP PP VRF+TKI ++ +G + + +L W +++++ V + + LM E
Sbjct: 73 YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLMMSKE 130
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDS---NIFKWTALIKGPSETPYEGGVFQLAFAVPEQ 63
RL +E +E Q+ D + +D + +WT +I GP T YE ++ L +
Sbjct: 19 RLLEELEEGQK-GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPK 77
Query: 64 YPLQPPQVRFLTKIFHPNVHFKTGEI---CLDILKNAWSPAWTLQSVCRAIIALMAHPE 119
YP PP VRF+TKI ++ +G + + +L W +++++ V + + LM E
Sbjct: 78 YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLMMSKE 135
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDS---NIFKWTALIKGPSETPYEGGVFQLAFAVPEQ 63
RL +E +E Q+ D + +D + +WT +I GP T YE ++ L +
Sbjct: 8 RLLEELEEGQK-GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPK 66
Query: 64 YPLQPPQVRFLTKIFHPNVHFKTGEI---CLDILKNAWSPAWTLQSVCRAIIALMAHPE 119
YP PP VRF+TKI ++ +G + + +L W +++++ V + + LM E
Sbjct: 67 YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLMMSKE 124
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDS---NIFKWTALIKGPSETPYEGGVFQLAFAVPEQ 63
RL +E +E Q+ D + +D + +WT +I GP T YE ++ L +
Sbjct: 9 RLLEELEEGQK-GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPK 67
Query: 64 YPLQPPQVRFLTKIFHPNVHFKTGEI---CLDILKNAWSPAWTLQSVCRAIIALMAHPE 119
YP PP VRF+TKI ++ +G + + +L W +++++ V + + LM E
Sbjct: 68 YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLMMSKE 125
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDS---NIFKWTALIKGPSETPYEGGVFQLAFAVPEQ 63
RL +E +E Q+ D + +D + +WT +I GP T YE ++ L +
Sbjct: 29 RLLEELEEGQK-GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPK 87
Query: 64 YPLQPPQVRFLTKIFHPNVHFKTGEI---CLDILKNAWSPAWTLQSVCRAIIALMAHPE 119
YP PP VRF+TKI V+ G + + +L W +++++ V + + LM E
Sbjct: 88 YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKE 145
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDS---NIFKWTALIKGPSETPYEGGVFQLAFAVPEQ 63
RL +E +E Q+ D + +D + +WT +I GP T YE ++ L +
Sbjct: 11 RLLEELEEGQK-GVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPK 69
Query: 64 YPLQPPQVRFLTKIFHPNVHFKTGEI---CLDILKNAWSPAWTLQSVCRAIIALMAHPE 119
YP PP VRF+TKI V+ G + + +L W +++++ V + + LM E
Sbjct: 70 YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKE 127
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 7 RLFKEYKEVQREKSADPDIQLVCDDS---NIFKWTALIKGPSETPYEGGVFQLAFAVPEQ 63
RL +E +E Q+ D + +D + +WT +I GP T YE ++ L +
Sbjct: 39 RLLEELEEGQK-GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPK 97
Query: 64 YPLQPPQVRFLTKIFHPNVHFKTGEI---CLDILKNAWSPAWTLQSVCRAIIALMAHPE 119
YP PP VRF+TKI V+ G + + +L W +++++ V + + LM E
Sbjct: 98 YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKE 155
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 18/143 (12%)
Query: 7 RLFKEYKEVQRE---KSADPDIQLVCDDSNIFKWTA-LIKGPSETPY----------EGG 52
RL KE +++ R K + ++LV D +++ W L+K ++ EG
Sbjct: 10 RLMKELRDIYRSQSFKGGNYAVELVND--SLYDWNVKLLKVDQDSALHNDLQILKEKEGA 67
Query: 53 VF-QLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-KNAWSPAWTLQSVCRA 110
F L F+ + +P PP VR ++ + G IC+++L K WS A++++SV
Sbjct: 68 DFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQ 127
Query: 111 IIALMAHPEPDSPLNCDSGMWTL 133
I A + + + ++L
Sbjct: 128 ISATLVKGKARVQFGANKSQYSL 150
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 19/149 (12%)
Query: 1 MQASRARLFKEYKEVQREKSADPDI---QLVCDDSNIFKW-TALIKGPSETPYEGGV--- 53
+QAS RL KE +++ R +S I +L+ D +++ W L K ++P +
Sbjct: 26 VQASD-RLMKELRDIYRSQSYKTGIYSVELIND--SLYDWHVKLQKVDPDSPLHSDLQIL 82
Query: 54 --------FQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-KNAWSPAWTL 104
L F+ + +P PP VR + + G +C+++L K WS A+++
Sbjct: 83 KEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSI 142
Query: 105 QSVCRAIIALMAHPEPDSPLNCDSGMWTL 133
+SV I A + + + + L
Sbjct: 143 ESVIMQINATLVKGKARVQFGANKNQYNL 171
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 30 DDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEI 89
DD + W+ I G T +E ++ L + YP PP V+F TKI V G +
Sbjct: 54 DDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVD-NCGRV 112
Query: 90 C---LDILKNAWSPAWTLQSV 107
L ILKN W+ +T++++
Sbjct: 113 IKNNLHILKN-WNRNYTIETI 132
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 30 DDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEI 89
DD + W+ I G T +E ++ L + YP PP V+F TKI V G +
Sbjct: 50 DDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVD-NCGRV 108
Query: 90 C---LDILKNAWSPAWTLQSV 107
L ILKN W+ +T++++
Sbjct: 109 IKNNLHILKN-WNRNYTIETI 128
>pdb|3MYU|A Chain A, Mycoplasma Genitalium Mg289
pdb|3MYU|B Chain B, Mycoplasma Genitalium Mg289
Length = 344
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 17 REKSADPDIQLVCDDSNIFKWTALIKGPSETPY 49
RE + +I++V DD+N F WT IKG S+ P+
Sbjct: 231 REIGINKNIKIVFDDANSFSWTQNIKG-SKRPF 262
>pdb|3CJM|A Chain A, Crystal Structure Of Putative Beta-Lactamase (Np_815223.1)
From Enterococcus Faecalis V583 At 1.50 A Resolution
Length = 282
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 23 PDIQLVCDD--SNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLT 75
P LV D S KWT LI +E YE G +A+ + +YPL+ Q +T
Sbjct: 82 PLTXLVADTVASGQKKWTDLIPYNAEEDYEEGTGIIAYNIQPEYPLKTLQEYAIT 136
>pdb|2D4V|A Chain A, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|B Chain B, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|C Chain C, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|D Chain D, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
Length = 429
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 8 LFKEYKEVQ--REKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYP 65
LF K VQ E PD + I ++ IKGP ETP GG+ L A+ +
Sbjct: 68 LFAGQKAVQLYGEGQYLPDETMAA----IREYKVAIKGPLETPVGGGIRSLNVAMRQDLD 123
Query: 66 L 66
L
Sbjct: 124 L 124
>pdb|3UZD|A Chain A, Crystal Structure Of 14-3-3 Gamma
Length = 248
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 29/126 (23%)
Query: 17 REKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTK 76
REK + +++ VC D LIK SET YE VF L ++ R+L +
Sbjct: 86 REK-IEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYL--------KMKGDYYRYLAE 136
Query: 77 IFHPNVHFKTGE---ICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGM-WT 132
+ TGE ++ + A+S A + H +P P+ + ++
Sbjct: 137 V-------ATGEKRATVVESSEKAYSEAHEISK---------EHMQPTHPIRLGLALNYS 180
Query: 133 LFWYRL 138
+F+Y +
Sbjct: 181 VFYYEI 186
>pdb|2B05|A Chain A, Crystal Structure Of 14-3-3 Gamma In Complex With A
Phosphoserine Peptide
pdb|2B05|B Chain B, Crystal Structure Of 14-3-3 Gamma In Complex With A
Phosphoserine Peptide
pdb|2B05|C Chain C, Crystal Structure Of 14-3-3 Gamma In Complex With A
Phosphoserine Peptide
pdb|2B05|D Chain D, Crystal Structure Of 14-3-3 Gamma In Complex With A
Phosphoserine Peptide
pdb|2B05|E Chain E, Crystal Structure Of 14-3-3 Gamma In Complex With A
Phosphoserine Peptide
pdb|2B05|F Chain F, Crystal Structure Of 14-3-3 Gamma In Complex With A
Phosphoserine Peptide
Length = 246
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 29/126 (23%)
Query: 17 REKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTK 76
REK + +++ VC D LIK SET YE VF L ++ R+L +
Sbjct: 85 REK-IEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYL--------KMKGDYYRYLAE 135
Query: 77 IFHPNVHFKTGE---ICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGM-WT 132
+ TGE ++ + A+S A + H +P P+ + ++
Sbjct: 136 V-------ATGEKRATVVESSEKAYSEAHEISK---------EHMQPTHPIRLGLALNYS 179
Query: 133 LFWYRL 138
+F+Y +
Sbjct: 180 VFYYEI 185
>pdb|3RQ1|A Chain A, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|B Chain B, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|C Chain C, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|D Chain D, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
Length = 418
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 9 FKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVF 54
FKEY E +R + QL+ D ++IFK A G PY GG F
Sbjct: 320 FKEY-EAER----NCYYQLIRDRADIFKQEAAQVGLPXLPYRGGFF 360
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 61 PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNA 97
PE Y + P T+I + FK GE+ IL+NA
Sbjct: 398 PEDYDIDTPPTNEKTRIGNGVYQFKIGEVVDVILQNA 434
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 35 FKWTALIKGPSET----PYEGGVFQLAFAVPEQYP 65
F+ T LI P++T P EG FQL +P YP
Sbjct: 95 FRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYP 129
>pdb|2FN0|A Chain A, Crystal Structure Of Yersinia Enterocolitica Salicylate
Synthase (Irp9)
pdb|2FN0|B Chain B, Crystal Structure Of Yersinia Enterocolitica Salicylate
Synthase (Irp9)
pdb|2FN1|A Chain A, Crystal Structures Of Yersinia Enterocolitica Salicylate
Synthase (Irp9) In Complex With The Reaction Products
Salicylate And Pyruvate
pdb|2FN1|B Chain B, Crystal Structures Of Yersinia Enterocolitica Salicylate
Synthase (Irp9) In Complex With The Reaction Products
Salicylate And Pyruvate
Length = 437
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 48 PYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSV 107
P GV + FA E Y + P +L K +H + +A W + S+
Sbjct: 21 PTISGVLR-QFAEEECYVYERPPCWYLGKGCQARLHINADGTQATFIDDAGEQKWAVDSI 79
Query: 108 CRAIIALMAHPE 119
MAHP+
Sbjct: 80 ADCARRFMAHPQ 91
>pdb|4E2E|A Chain A, Crystal Structure Of A Tyrosine 3-MonooxygenaseTRYPTOPHAN
5- Monooxygenase Activation Protein, Gamma Polypeptide
(Ywhag) From Homo Sapiens At 2.25 A Resolution
Length = 248
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 17 REKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQL 56
REK + +++ VC D LIK SET YE VF L
Sbjct: 87 REK-IEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYL 125
>pdb|1RXQ|A Chain A, Yfit From Bacillus Subtilis Is A Probable Metal-dependent
Hydrolase With An Unusual Four-helix Bundle Topology
pdb|1RXQ|B Chain B, Yfit From Bacillus Subtilis Is A Probable Metal-dependent
Hydrolase With An Unusual Four-helix Bundle Topology
pdb|1RXQ|C Chain C, Yfit From Bacillus Subtilis Is A Probable Metal-dependent
Hydrolase With An Unusual Four-helix Bundle Topology
pdb|1RXQ|D Chain D, Yfit From Bacillus Subtilis Is A Probable Metal-dependent
Hydrolase With An Unusual Four-helix Bundle Topology
Length = 178
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 10 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQ 55
K + E++ K+ADP L +WTAL++ ++ ++ G +
Sbjct: 96 KAWSELKDSKTADPSGSLALLQELHGRWTALLRTLTDQQFKRGFYH 141
>pdb|2X8Y|A Chain A, Crystal Structure Of Ance
pdb|2X8Z|A Chain A, Crystal Structure Of Ance-Captopril Complex
pdb|2X90|A Chain A, Crystal Structure Of Ance-Enalaprilat Complex
pdb|2X91|A Chain A, Crystal Structure Of Ance-Lisinopril Complex
pdb|2X96|A Chain A, Crystal Structure Of Ance-Rxpa380 Complex
pdb|2X97|A Chain A, Crystal Structure Of Ance-Rxp407 Complex
pdb|2XHM|A Chain A, Crystal Structure Of Ance-K26 Complex
pdb|3ZQZ|A Chain A, Crystal Structure Of Ance In Complex With A Selenium
Analogue Of Captopril
pdb|4AA1|A Chain A, Crystal Structure Of Ance In Complex With Angiotensin-Ii
pdb|4AA2|A Chain A, Crystal Structure Of Ance In Complex With Bradykinin
Potentiating Peptide B
pdb|4ASQ|A Chain A, Crystal Structure Of Ance In Complex With Bradykinin
pdb|4ASR|A Chain A, Crystal Structure Of Ance In Complex With Thr6-Bradykinin
Length = 598
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 71 VRF-LTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
VRF L K + V +TG I + +L N W+ W+ IA + P P+ PL
Sbjct: 219 VRFRLRKHYGDAVVSETGPIPMHLLGNMWAQQWSE-------IADIVSPFPEKPL 266
>pdb|2X92|A Chain A, Crystal Structure Of Ance-Ramiprilat Complex
pdb|2X93|A Chain A, Crystal Structure Of Ance-Trandolaprilat Complex
pdb|2X94|A Chain A, Crystal Structure Of Ance-Perindoprilat Complex
pdb|2X95|A Chain A, Crystal Structure Of Ance-Lisinopril-Tryptophan Analogue,
Lisw-S Complex
Length = 599
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 71 VRF-LTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124
VRF L K + V +TG I + +L N W+ W+ IA + P P+ PL
Sbjct: 219 VRFRLRKHYGDAVVSETGPIPMHLLGNMWAQQWSE-------IADIVSPFPEKPL 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,906,556
Number of Sequences: 62578
Number of extensions: 188129
Number of successful extensions: 573
Number of sequences better than 100.0: 141
Number of HSP's better than 100.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 141
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)