Query 031652
Match_columns 155
No_of_seqs 121 out of 1136
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 03:30:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0419 Ubiquitin-protein liga 100.0 3.4E-50 7.4E-55 276.4 12.6 147 1-152 1-148 (152)
2 COG5078 Ubiquitin-protein liga 100.0 1.1E-49 2.4E-54 286.3 15.0 142 4-150 6-148 (153)
3 KOG0417 Ubiquitin-protein liga 100.0 1.1E-49 2.5E-54 280.7 14.0 141 4-147 2-147 (148)
4 PTZ00390 ubiquitin-conjugating 100.0 4.4E-46 9.4E-51 269.9 18.2 143 1-147 1-148 (152)
5 PLN00172 ubiquitin conjugating 100.0 9.4E-46 2E-50 267.0 17.8 140 4-146 2-146 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 2.1E-44 4.5E-49 254.5 13.4 145 4-153 6-164 (171)
7 cd00195 UBCc Ubiquitin-conjuga 100.0 1.2E-40 2.5E-45 239.0 15.9 138 6-148 2-140 (141)
8 KOG0421 Ubiquitin-protein liga 100.0 3.5E-41 7.5E-46 235.1 11.5 143 3-148 29-171 (175)
9 PF00179 UQ_con: Ubiquitin-con 100.0 7.8E-41 1.7E-45 239.6 12.7 137 7-148 1-139 (140)
10 KOG0418 Ubiquitin-protein liga 100.0 1.6E-40 3.6E-45 241.2 13.7 148 1-148 1-154 (200)
11 KOG0424 Ubiquitin-protein liga 100.0 4.9E-40 1.1E-44 229.3 13.6 143 1-148 1-151 (158)
12 KOG0426 Ubiquitin-protein liga 100.0 7.1E-40 1.5E-44 225.6 12.5 139 1-144 1-154 (165)
13 smart00212 UBCc Ubiquitin-conj 100.0 6.6E-39 1.4E-43 230.9 15.5 140 6-150 1-142 (145)
14 KOG0416 Ubiquitin-protein liga 100.0 5.7E-37 1.2E-41 219.4 10.6 144 1-149 1-150 (189)
15 KOG0422 Ubiquitin-protein liga 100.0 2.6E-35 5.7E-40 204.6 13.1 141 3-147 2-149 (153)
16 KOG0420 Ubiquitin-protein liga 100.0 2.7E-35 5.8E-40 211.2 10.2 141 2-150 27-171 (184)
17 KOG0894 Ubiquitin-protein liga 100.0 9.5E-31 2E-35 193.9 14.6 119 3-127 5-129 (244)
18 KOG0427 Ubiquitin conjugating 100.0 5.5E-31 1.2E-35 181.4 11.7 113 2-118 14-127 (161)
19 KOG0423 Ubiquitin-protein liga 100.0 1.1E-31 2.3E-36 192.9 6.5 125 4-131 11-135 (223)
20 KOG0428 Non-canonical ubiquiti 99.9 6.5E-24 1.4E-28 160.4 9.4 108 3-117 11-122 (314)
21 KOG0429 Ubiquitin-conjugating 99.9 1.6E-22 3.4E-27 150.7 12.2 142 6-152 22-168 (258)
22 KOG0895 Ubiquitin-conjugating 99.7 4.4E-17 9.5E-22 143.5 7.5 107 8-117 856-971 (1101)
23 KOG0895 Ubiquitin-conjugating 99.6 7.5E-15 1.6E-19 129.6 10.5 111 5-118 284-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.5 7.5E-14 1.6E-18 97.0 7.8 111 6-117 8-123 (138)
25 KOG0897 Predicted ubiquitin-co 99.1 3E-10 6.4E-15 77.1 5.3 92 54-146 13-107 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.6 2E-07 4.3E-12 66.1 7.6 67 50-117 34-106 (133)
27 PF08694 UFC1: Ubiquitin-fold 98.6 2.8E-08 6.1E-13 70.1 3.0 90 5-108 26-135 (161)
28 KOG3357 Uncharacterized conser 98.2 4.9E-06 1.1E-10 58.0 6.1 89 5-107 29-137 (167)
29 PF05743 UEV: UEV domain; Int 98.2 9.1E-06 2E-10 56.8 6.8 78 34-117 32-117 (121)
30 KOG2391 Vacuolar sorting prote 97.0 0.008 1.7E-07 48.6 9.4 70 47-118 61-138 (365)
31 PF14462 Prok-E2_E: Prokaryoti 96.7 0.022 4.7E-07 39.8 8.9 89 23-116 12-120 (122)
32 PF05773 RWD: RWD domain; Int 96.6 0.0093 2E-07 40.1 6.4 68 6-76 4-73 (113)
33 smart00591 RWD domain in RING 95.8 0.089 1.9E-06 34.9 7.8 26 50-75 39-64 (107)
34 PF14457 Prok-E2_A: Prokaryoti 95.7 0.018 4E-07 42.2 4.3 62 55-117 56-126 (162)
35 PF09765 WD-3: WD-repeat regio 90.2 0.98 2.1E-05 36.2 6.0 85 6-116 102-187 (291)
36 KOG4018 Uncharacterized conser 87.3 2.8 6E-05 32.0 6.4 22 53-74 50-71 (215)
37 KOG0309 Conserved WD40 repeat- 85.8 4.4 9.5E-05 36.7 7.6 68 6-76 423-491 (1081)
38 KOG2851 Eukaryotic-type DNA pr 66.9 15 0.00032 30.5 5.1 71 81-152 331-409 (412)
39 TIGR03737 PRTRC_B PRTRC system 66.9 13 0.00027 28.9 4.6 40 75-119 131-174 (228)
40 PF14460 Prok-E2_D: Prokaryoti 65.7 14 0.0003 27.2 4.5 41 74-118 89-133 (175)
41 PF03366 YEATS: YEATS family; 64.6 22 0.00048 23.0 4.8 40 35-76 2-41 (84)
42 PRK11700 hypothetical protein; 64.0 36 0.00078 25.6 6.3 72 33-110 87-184 (187)
43 PF06113 BRE: Brain and reprod 63.4 25 0.00053 28.8 5.8 25 51-75 305-329 (333)
44 cd00421 intradiol_dioxygenase 57.5 17 0.00038 25.8 3.7 24 51-74 65-89 (146)
45 smart00340 HALZ homeobox assoc 55.4 16 0.00034 20.6 2.4 16 5-20 21-36 (44)
46 cd03457 intradiol_dioxygenase_ 54.2 21 0.00045 26.8 3.7 25 51-75 86-110 (188)
47 PF06113 BRE: Brain and reprod 50.7 24 0.00052 28.9 3.8 66 34-112 53-121 (333)
48 cd03459 3,4-PCD Protocatechuat 45.7 35 0.00076 24.8 3.7 25 51-75 72-101 (158)
49 KOG0662 Cyclin-dependent kinas 44.4 22 0.00048 27.1 2.5 56 66-121 167-225 (292)
50 KOG3285 Spindle assembly check 43.9 53 0.0011 24.6 4.3 42 4-47 120-161 (203)
51 KOG1047 Bifunctional leukotrie 43.4 23 0.0005 31.1 2.8 30 46-76 247-279 (613)
52 PF04881 Adeno_GP19K: Adenovir 39.0 29 0.00063 24.5 2.3 32 30-61 43-75 (139)
53 KOG0177 20S proteasome, regula 37.2 15 0.00032 27.7 0.6 31 86-116 135-165 (200)
54 KOG4445 Uncharacterized conser 32.9 59 0.0013 26.5 3.4 25 52-76 45-69 (368)
55 TIGR03044 PS_II_psb27 photosys 32.7 1.4E+02 0.0031 21.2 5.0 42 104-148 41-82 (135)
56 TIGR02423 protocat_alph protoc 32.4 68 0.0015 24.1 3.6 24 51-74 96-124 (193)
57 cd03463 3,4-PCD_alpha Protocat 30.8 77 0.0017 23.7 3.6 24 51-74 92-120 (185)
58 PF00845 Gemini_BL1: Geminivir 30.4 1.2E+02 0.0027 23.8 4.7 47 32-79 100-155 (276)
59 PF13950 Epimerase_Csub: UDP-g 27.6 75 0.0016 19.1 2.6 20 96-115 36-55 (62)
60 PF12065 DUF3545: Protein of u 26.6 49 0.0011 20.0 1.6 15 5-19 36-50 (59)
61 smart00107 BTK Bruton's tyrosi 23.0 39 0.00084 18.3 0.6 15 77-92 7-22 (36)
62 PF14135 DUF4302: Domain of un 22.9 2.9E+02 0.0063 21.1 5.7 26 3-28 9-35 (235)
63 COG0544 Tig FKBP-type peptidyl 22.2 1.9E+02 0.0042 24.6 4.9 14 54-67 211-224 (441)
64 TIGR02439 catechol_proteo cate 22.0 1.3E+02 0.0028 24.1 3.6 24 51-74 180-221 (285)
65 KOG4567 GTPase-activating prot 21.1 89 0.0019 25.7 2.5 51 102-152 192-243 (370)
66 cd03461 1,2-HQD Hydroxyquinol 20.5 1.5E+02 0.0032 23.7 3.6 24 51-74 172-213 (277)
67 KOG0744 AAA+-type ATPase [Post 20.2 2E+02 0.0043 24.1 4.3 72 31-119 170-249 (423)
No 1
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-50 Score=276.41 Aligned_cols=147 Identities=40% Similarity=0.814 Sum_probs=141.7
Q ss_pred Ch-HHHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeccccc
Q 031652 1 MQ-ASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFH 79 (155)
Q Consensus 1 m~-~a~~RL~~E~~~l~~~~~~~~~i~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~H 79 (155)
|+ .|.+||.+|++.+++++ +.|++..+.++|+++|++.|.||.+|||+||+|++.|.|+++||.+||.|+|.+.+||
T Consensus 1 MstpArrrLmrDfkrlqedp--p~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFH 78 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDP--PAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFH 78 (152)
T ss_pred CCchHHHHHHHHHHHhhcCC--CCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccC
Confidence 66 68899999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCeEEccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCCcchhhhhhHHHHHHHHHHHHHhccccccc
Q 031652 80 PNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISRYYPSVIMG 152 (155)
Q Consensus 80 Pni~~~~G~icl~~l~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~e~a~~~~~~~~~~~~~~k~~~~v~~~ 152 (155)
||| |.+|.+|+|+|...|+|.|++.+||.+||+||.+||+.+|+|.|||+ +|.++.++|.++++..|-.+
T Consensus 79 PNv-ya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~--Lf~e~~rey~rrVk~~veqs 148 (152)
T KOG0419|consen 79 PNV-YADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAAR--LFSENKREYERRVKETVEQS 148 (152)
T ss_pred CCc-CCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHH--HHhhChHHHHHHHHHHHHHh
Confidence 999 59999999999999999999999999999999999999999999998 88899999999999887654
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-49 Score=286.28 Aligned_cols=142 Identities=45% Similarity=0.879 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEecCC-CcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEecccccCCc
Q 031652 4 SRARLFKEYKEVQREKSADPDIQLVCDDS-NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNV 82 (155)
Q Consensus 4 a~~RL~~E~~~l~~~~~~~~~i~~~~~~~-n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPni 82 (155)
|.+||++|++++++.+ +++|++.+.++ |+++|+++|.||++||||||.|++.|.||++||++||+|+|.|+||||||
T Consensus 6 a~~RL~kE~~~l~~~~--~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV 83 (153)
T COG5078 6 ALKRLLKELKKLQKDP--PPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNV 83 (153)
T ss_pred HHHHHHHHHHHHhcCC--CCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCc
Confidence 8999999999999999 99999998877 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCCcchhhhhhHHHHHHHHHHHHHhccccc
Q 031652 83 HFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISRYYPSVI 150 (155)
Q Consensus 83 ~~~~G~icl~~l~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~e~a~~~~~~~~~~~~~~k~~~~v~ 150 (155)
+ .+|.||+++|.+.|+|+++|++||++|+++|.+||.++|+|.|||. +|+++.++|.++++..+-
T Consensus 84 ~-~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~--~~~~d~~~y~~~vr~~~~ 148 (153)
T COG5078 84 D-PSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAAT--LYREDKEEYEKKVREWVK 148 (153)
T ss_pred C-CCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHH--HHHhCHHHHHHHHHHHHH
Confidence 7 9999999999999999999999999999999999999999999998 666666777766665544
No 3
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-49 Score=280.69 Aligned_cols=141 Identities=43% Similarity=0.800 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEecccccCCcc
Q 031652 4 SRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVH 83 (155)
Q Consensus 4 a~~RL~~E~~~l~~~~~~~~~i~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPni~ 83 (155)
|.+||.+|++++++++ ++||++.+.++|+++|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||+
T Consensus 2 a~~RI~kE~~~l~~dp--~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~ 79 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDP--PPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID 79 (148)
T ss_pred cHHHHHHHHHHHhcCC--CCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC
Confidence 5679999999999999 99999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCeEEccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCCcchhhhhhHH-----HHHHHHHHHHHhcc
Q 031652 84 FKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTL-----FWYRLVEFISRYYP 147 (155)
Q Consensus 84 ~~~G~icl~~l~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~e~a~~~~-----~~~~~~~~~~k~~~ 147 (155)
..|.||+|+|.+.|+|+.++..||++|+++|.+||+++|++.++|.++. |.+.+|+|.+|+|.
T Consensus 80 -~~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 80 -SNGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred -ccccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999999998654 88999999999885
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=4.4e-46 Score=269.92 Aligned_cols=143 Identities=42% Similarity=0.749 Sum_probs=134.7
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEecccccC
Q 031652 1 MQASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHP 80 (155)
Q Consensus 1 m~~a~~RL~~E~~~l~~~~~~~~~i~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HP 80 (155)
|+ +++||++|++++++.+ ++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 1 ~~-~~kRl~~E~~~l~~~~--~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HP 77 (152)
T PTZ00390 1 MS-ISKRIEKETQNLANDP--PPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHP 77 (152)
T ss_pred Cc-HHHHHHHHHHHHHhCC--CCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeec
Confidence 45 6899999999999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCeEEccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCCcchhhhhhHH-----HHHHHHHHHHHhcc
Q 031652 81 NVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTL-----FWYRLVEFISRYYP 147 (155)
Q Consensus 81 ni~~~~G~icl~~l~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~e~a~~~~-----~~~~~~~~~~k~~~ 147 (155)
||+ .+|.||+++|.++|+|++|+++||.+|+++|.+|++++|+|.+||+++. |++.+++|.++++.
T Consensus 78 NV~-~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 78 NID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred eEC-CCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 996 7999999999999999999999999999999999999999999998653 77888888888775
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=9.4e-46 Score=266.97 Aligned_cols=140 Identities=41% Similarity=0.778 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEecccccCCcc
Q 031652 4 SRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVH 83 (155)
Q Consensus 4 a~~RL~~E~~~l~~~~~~~~~i~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPni~ 83 (155)
|.+||++|++++++++ ++++++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+
T Consensus 2 a~~Rl~kE~~~l~~~~--~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~ 79 (147)
T PLN00172 2 ATKRIQKEHKDLLKDP--PSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNIN 79 (147)
T ss_pred hHHHHHHHHHHHHhCC--CCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceEC
Confidence 5799999999999998 89999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCeEEccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCCcchhhhhhHH-----HHHHHHHHHHHhc
Q 031652 84 FKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTL-----FWYRLVEFISRYY 146 (155)
Q Consensus 84 ~~~G~icl~~l~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~e~a~~~~-----~~~~~~~~~~k~~ 146 (155)
.+|.||+++|.++|+|++|+++||.+|+++|.+|++++|+|.+||+++. |++.+++|.++++
T Consensus 80 -~~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 80 -SNGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred -CCCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 7999999999999999999999999999999999999999999998543 6666666666654
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-44 Score=254.54 Aligned_cols=145 Identities=34% Similarity=0.677 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEe-cCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEecccccCCc
Q 031652 4 SRARLFKEYKEVQREKSADPDIQLVC-DDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNV 82 (155)
Q Consensus 4 a~~RL~~E~~~l~~~~~~~~~i~~~~-~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPni 82 (155)
|..-|+++|++|++++ ..|+++.. ++.|+++|.|.|.||++|+|+||.|+..+.||.+||.+||+++|.|++|||||
T Consensus 6 a~~ll~~qlk~L~~~p--v~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNv 83 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEP--VEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNV 83 (171)
T ss_pred hHHHHHHHHHHHhcCC--CCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCc
Confidence 4578999999999999 99999994 55699999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEccCCC-------------CCCCCcCCHHHHHHHHHHHhcCCCCCCCcchhhhhhHHHHHHHHHHHHHhcccc
Q 031652 83 HFKTGEICLDILK-------------NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISRYYPSV 149 (155)
Q Consensus 83 ~~~~G~icl~~l~-------------~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~e~a~~~~~~~~~~~~~~k~~~~v 149 (155)
+ ++|.+|+++|. +.|.|..|+++||++|.+||.+||.++|+|.+||+ .++++.+||.+++.++|
T Consensus 84 y-~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~--~~Ren~~EykkkV~r~v 160 (171)
T KOG0425|consen 84 Y-EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAK--EWRENPEEYKKKVRRCV 160 (171)
T ss_pred C-CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHH--HHhhCHHHHHHHHHHHH
Confidence 4 99999999996 58999999999999999999999999999999988 88899999999999998
Q ss_pred cccc
Q 031652 150 IMGI 153 (155)
Q Consensus 150 ~~~~ 153 (155)
-++.
T Consensus 161 r~s~ 164 (171)
T KOG0425|consen 161 RRSQ 164 (171)
T ss_pred HHHH
Confidence 7764
No 7
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.2e-40 Score=239.03 Aligned_cols=138 Identities=42% Similarity=0.849 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEecccccCCccCC
Q 031652 6 ARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFK 85 (155)
Q Consensus 6 ~RL~~E~~~l~~~~~~~~~i~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPni~~~ 85 (155)
+||++|++++++.+ ..|+.+.+.++|+++|+++|.|+++|||+||.|+++|.||++||++||.|+|.+++|||||+ .
T Consensus 2 ~Rl~~E~~~l~~~~--~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~-~ 78 (141)
T cd00195 2 KRLQKELKDLKKDP--PSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD-E 78 (141)
T ss_pred chHHHHHHHHHhCC--CCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-C
Confidence 79999999999999 89999999999999999999999999999999999999999999999999999999999997 8
Q ss_pred CCeEEccCCCCC-CCCcCCHHHHHHHHHHHhcCCCCCCCcchhhhhhHHHHHHHHHHHHHhccc
Q 031652 86 TGEICLDILKNA-WSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISRYYPS 148 (155)
Q Consensus 86 ~G~icl~~l~~~-W~p~~~i~~iL~~i~~~l~~p~~~~p~n~e~a~~~~~~~~~~~~~~k~~~~ 148 (155)
+|.||++++... |+|++++++||.+|+++|.+|+.++|+|.+||+ +|+++.++|.++++..
T Consensus 79 ~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~--~~~~~~~~f~~~~~~~ 140 (141)
T cd00195 79 NGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAK--LYKENREEFKKKAREW 140 (141)
T ss_pred CCCCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHH--HHHHCHHHHHHHHHHh
Confidence 999999999876 999999999999999999999999999999988 7788999999988764
No 8
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-41 Score=235.11 Aligned_cols=143 Identities=34% Similarity=0.679 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEecccccCCc
Q 031652 3 ASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNV 82 (155)
Q Consensus 3 ~a~~RL~~E~~~l~~~~~~~~~i~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPni 82 (155)
...|||++|+..++-.. .+||++-|..+|++.|..+|.||++|+|+|..|++.+.||.+||++||.|+|.|+.|||||
T Consensus 29 ~V~KRLq~ELm~Lmms~--~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV 106 (175)
T KOG0421|consen 29 SVTKRLQSELMGLMMSN--TPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV 106 (175)
T ss_pred hHHHHHHHHHHHHHhcC--CCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence 45799999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCCcchhhhhhHHHHHHHHHHHHHhccc
Q 031652 83 HFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISRYYPS 148 (155)
Q Consensus 83 ~~~~G~icl~~l~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~e~a~~~~~~~~~~~~~~k~~~~ 148 (155)
| ..|.||+|+|.+.|+..|.|++||++||++|-+||.++|+|..||++..-.+..++|+.+..+.
T Consensus 107 D-~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 107 D-LSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWSDQEEYKKYLEALYKE 171 (175)
T ss_pred c-ccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhcCHHHHHHHHHHHhhc
Confidence 8 8999999999999999999999999999999999999999999998655444444555444443
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=7.8e-41 Score=239.59 Aligned_cols=137 Identities=43% Similarity=0.864 Sum_probs=124.4
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEecCC-CcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEecccccCCccCC
Q 031652 7 RLFKEYKEVQREKSADPDIQLVCDDS-NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFK 85 (155)
Q Consensus 7 RL~~E~~~l~~~~~~~~~i~~~~~~~-n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPni~~~ 85 (155)
||++|++++++.+ +.|+.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 1 Rl~~E~~~l~~~~--~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-~ 77 (140)
T PF00179_consen 1 RLQKELKELQKNP--PPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-E 77 (140)
T ss_dssp HHHHHHHHHHHSH--TTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--T
T ss_pred CHHHHHHHHhhCC--CCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-c
Confidence 9999999999999 99999998776 999999999999999999999999999999999999999999999999997 8
Q ss_pred CCeEEccCCCC-CCCCcCCHHHHHHHHHHHhcCCCCCCCcchhhhhhHHHHHHHHHHHHHhccc
Q 031652 86 TGEICLDILKN-AWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISRYYPS 148 (155)
Q Consensus 86 ~G~icl~~l~~-~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~e~a~~~~~~~~~~~~~~k~~~~ 148 (155)
+|.+|+++|.. .|+|++++.+||.+|+++|.+|+.++|+|.+|++ +|.++.++|.++++.+
T Consensus 78 ~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~--~~~~~~~~f~~~~~~~ 139 (140)
T PF00179_consen 78 NGRICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAE--LYKNDREEFEKKAREW 139 (140)
T ss_dssp TSBBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHH--HHHHCHHHHHHHHHHH
T ss_pred cccchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHH--HHHHCHHHHHHHHHHc
Confidence 99999999984 5999999999999999999999999999999988 7778888888887654
No 10
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-40 Score=241.18 Aligned_cols=148 Identities=37% Similarity=0.696 Sum_probs=139.4
Q ss_pred ChHHHHHHHHHHHHHHhcCC-CCCCeEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeccccc
Q 031652 1 MQASRARLFKEYKEVQREKS-ADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFH 79 (155)
Q Consensus 1 m~~a~~RL~~E~~~l~~~~~-~~~~i~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~H 79 (155)
|+.|.+||++|++++.+++. +..||.+...++|+.+..+.|.||+|||||||.|.++|.+|++||++||+|+|.|+|||
T Consensus 1 m~~~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwH 80 (200)
T KOG0418|consen 1 MSNAFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWH 80 (200)
T ss_pred CccHHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeec
Confidence 77889999999999998884 36799999889999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCeEEccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCCcchhhhhhHH-----HHHHHHHHHHHhccc
Q 031652 80 PNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTL-----FWYRLVEFISRYYPS 148 (155)
Q Consensus 80 Pni~~~~G~icl~~l~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~e~a~~~~-----~~~~~~~~~~k~~~~ 148 (155)
|||+..+|.||+|++.+.|.+++|+..+|++||++|..|++++|.+...|+.+. |...++-|...+++.
T Consensus 81 PnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 81 PNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred CCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 999989999999999999999999999999999999999999999999998654 888899999988876
No 11
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-40 Score=229.29 Aligned_cols=143 Identities=30% Similarity=0.613 Sum_probs=127.7
Q ss_pred Ch-HHHHHHHHHHHHHHhcCCCCCCeEEEecC-----CCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEe
Q 031652 1 MQ-ASRARLFKEYKEVQREKSADPDIQLVCDD-----SNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFL 74 (155)
Q Consensus 1 m~-~a~~RL~~E~~~l~~~~~~~~~i~~~~~~-----~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~ 74 (155)
|| .+..||+.|-+.+.++. +-|+.+.+.. .|++.|+|.|.|++||+||||.|++++.||++||.+||+++|.
T Consensus 1 ~s~~~~~rl~eErk~wrk~h--p~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~ 78 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDH--PFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFK 78 (158)
T ss_pred CcchHHHHHHHHHHHHhhcC--CCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccC
Confidence 55 67899999999999999 9999998543 4799999999999999999999999999999999999999999
Q ss_pred cccccCCccCCCCeEEccCCCC--CCCCcCCHHHHHHHHHHHhcCCCCCCCcchhhhhhHHHHHHHHHHHHHhccc
Q 031652 75 TKIFHPNVHFKTGEICLDILKN--AWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISRYYPS 148 (155)
Q Consensus 75 t~i~HPni~~~~G~icl~~l~~--~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~e~a~~~~~~~~~~~~~~k~~~~ 148 (155)
+++||||| |.+|.|||++|.+ +|+|++||..||.+||.+|.+||+.+|+|.||. ..|.++..+|..+++.+
T Consensus 79 ~pl~HPNV-ypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~--~~~~~~r~eYekrvr~q 151 (158)
T KOG0424|consen 79 PPLFHPNV-YPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAY--TIYCQDRAEYEKRVRAQ 151 (158)
T ss_pred CCCcCCCc-CCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHH--HHHhhCHHHHHHHHHHH
Confidence 99999999 5899999999985 499999999999999999999999999999994 46555555555555443
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-40 Score=225.61 Aligned_cols=139 Identities=33% Similarity=0.721 Sum_probs=126.9
Q ss_pred Ch-HHHHHHHHHHHHHHhcCCCCCCeEEEe-cCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEecccc
Q 031652 1 MQ-ASRARLFKEYKEVQREKSADPDIQLVC-DDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIF 78 (155)
Q Consensus 1 m~-~a~~RL~~E~~~l~~~~~~~~~i~~~~-~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~ 78 (155)
|+ .|+|||.+||+++..++ ++||.+.+ +++|+++|.+.|.||++|+|+||.|..++.||.+||.+||+++|...+|
T Consensus 1 m~~~AlkRLm~EykqLt~~~--P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~f 78 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNP--PEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMF 78 (165)
T ss_pred CchhHHHHHHHHHHHHccCC--CCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccc
Confidence 55 78999999999999999 99999985 5689999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCeEEccCCC-------------CCCCCcCCHHHHHHHHHHHhcCCCCCCCcchhhhhhHHHHHHHHHHHHH
Q 031652 79 HPNVHFKTGEICLDILK-------------NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISR 144 (155)
Q Consensus 79 HPni~~~~G~icl~~l~-------------~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~e~a~~~~~~~~~~~~~~k 144 (155)
|||| |.+|++|+++|. +.|+|..+++.||+++.+||.+||.++.+|.+|+. +.+++..+|-+-
T Consensus 79 HPNi-y~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~--mWRe~R~ef~~i 154 (165)
T KOG0426|consen 79 HPNI-YPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACK--MWREDREEFEKI 154 (165)
T ss_pred cCcc-cCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHH--HHHHhHHHHHHH
Confidence 9999 699999999985 68999999999999999999999999999999988 444555555443
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=6.6e-39 Score=230.90 Aligned_cols=140 Identities=47% Similarity=0.867 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEecCC-CcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEecccccCCccC
Q 031652 6 ARLFKEYKEVQREKSADPDIQLVCDDS-NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHF 84 (155)
Q Consensus 6 ~RL~~E~~~l~~~~~~~~~i~~~~~~~-n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPni~~ 84 (155)
+||++|++++++.. ..|+.+.+.++ |+++|+++|.||++|||+||.|++.|.||++||.+||+|+|.+++|||||+
T Consensus 1 ~Rl~~E~~~~~~~~--~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~- 77 (145)
T smart00212 1 KRLLKELKELLKDP--PPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD- 77 (145)
T ss_pred ChHHHHHHHHHhCC--CCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC-
Confidence 59999999999999 88999887665 999999999999999999999999999999999999999999999999997
Q ss_pred CCCeEEccCCC-CCCCCcCCHHHHHHHHHHHhcCCCCCCCcchhhhhhHHHHHHHHHHHHHhccccc
Q 031652 85 KTGEICLDILK-NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISRYYPSVI 150 (155)
Q Consensus 85 ~~G~icl~~l~-~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~e~a~~~~~~~~~~~~~~k~~~~v~ 150 (155)
.+|.+|++.+. ++|+|+++++++|.+|+++|.+|+.++|+|.|||+ +|.++.++|.++++.++.
T Consensus 78 ~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~--~~~~~~~~f~~~~~~~~~ 142 (145)
T smart00212 78 SSGEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAAT--LYKKNREEFKKKAREWTK 142 (145)
T ss_pred CCCCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHH--HHHHCHHHHHHHHHHHHH
Confidence 79999999998 89999999999999999999999999999999998 666777777777766543
No 14
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-37 Score=219.43 Aligned_cols=144 Identities=27% Similarity=0.670 Sum_probs=132.6
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEecccccC
Q 031652 1 MQASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHP 80 (155)
Q Consensus 1 m~~a~~RL~~E~~~l~~~~~~~~~i~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HP 80 (155)
|+++.|||-.|...|.... ..+...++++.+++|.+.||++|||+||++++++.+|++||++.|.|.|.++||||
T Consensus 1 ms~~~rRid~Dv~KL~~s~-----yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHP 75 (189)
T KOG0416|consen 1 MSSGKRRIDTDVMKLLMSD-----YEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHP 75 (189)
T ss_pred CCCcccchhhHHHHHHhcC-----CeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCC
Confidence 7889999999999988554 66778888999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCeEEccCCCCCCCCcCCHHHHHHHH-HHHhcCCCCCCCcchhhhhhHH-----HHHHHHHHHHHhcccc
Q 031652 81 NVHFKTGEICLDILKNAWSPAWTLQSVCRAI-IALMAHPEPDSPLNCDSGMWTL-----FWYRLVEFISRYYPSV 149 (155)
Q Consensus 81 ni~~~~G~icl~~l~~~W~p~~~i~~iL~~i-~~~l~~p~~~~p~n~e~a~~~~-----~~~~~~~~~~k~~~~v 149 (155)
||+..+|.||||.+...|+|.+.+..|+... -.+|..||+.+|+|.|||.+++ |++.+++|++|||.--
T Consensus 76 NIDe~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~ 150 (189)
T KOG0416|consen 76 NIDEASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPE 150 (189)
T ss_pred CchhccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChh
Confidence 9999999999999999999999999998765 5678899999999999998765 8999999999998643
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-35 Score=204.62 Aligned_cols=141 Identities=38% Similarity=0.766 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCe-EEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEecccccCC
Q 031652 3 ASRARLFKEYKEVQREKSADPDI-QLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPN 81 (155)
Q Consensus 3 ~a~~RL~~E~~~l~~~~~~~~~i-~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPn 81 (155)
.|.+||.+|+.+|++.. ...+ .+...+.|++.|.+.|. |++-||..|.|+++|.||.+||++||+|.|.|.|||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~--~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpN 78 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNK--MKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPN 78 (153)
T ss_pred chhHHHHHHHHHHHhcc--HHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCC
Confidence 47899999999999998 5544 23467789999999999 99999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCCC-CCCCCcCCHHHHHHHHHHHhcCCCCCCCcchhhhhhHH-----HHHHHHHHHHHhcc
Q 031652 82 VHFKTGEICLDILK-NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTL-----FWYRLVEFISRYYP 147 (155)
Q Consensus 82 i~~~~G~icl~~l~-~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~e~a~~~~-----~~~~~~~~~~k~~~ 147 (155)
|| +.|.+|+.++. ++|.|+..+++||..|.+++.+|++++|++.|+|..+. |.+.+.||.+|++.
T Consensus 79 VD-e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 79 VD-EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred CC-CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 98 77999999997 89999999999999999999999999999999998654 78888888888764
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-35 Score=211.19 Aligned_cols=141 Identities=33% Similarity=0.620 Sum_probs=119.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCeEEE----ecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeccc
Q 031652 2 QASRARLFKEYKEVQREKSADPDIQLV----CDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKI 77 (155)
Q Consensus 2 ~~a~~RL~~E~~~l~~~~~~~~~i~~~----~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i 77 (155)
|.|+-||++|+.++.--+ +++.. +.+.+..+++++|. |++|.|+||.|.|.+.+|+.||++||+|+|.|++
T Consensus 27 s~a~lrl~~di~elnLp~----t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV 101 (184)
T KOG0420|consen 27 SAALLRLKKDILELNLPP----TCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKV 101 (184)
T ss_pred cHHHHHHHhhhhhccCCC----ccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecc
Confidence 356788999888887555 44433 33333336999999 9999999999999999999999999999999999
Q ss_pred ccCCccCCCCeEEccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCCcchhhhhhHHHHHHHHHHHHHhccccc
Q 031652 78 FHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISRYYPSVI 150 (155)
Q Consensus 78 ~HPni~~~~G~icl~~l~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~e~a~~~~~~~~~~~~~~k~~~~v~ 150 (155)
|||||| .+|.||+++|+++|+|+.++.+|+.+++++|.+|+++||+|.|||+ .+.++.+.|.++++..+-
T Consensus 102 ~HPNId-~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~--~l~~n~e~F~~~Vr~~m~ 171 (184)
T KOG0420|consen 102 YHPNID-LDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAA--VLKSNREGFENNVRRAMS 171 (184)
T ss_pred ccCCcC-CcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHH--HHHhCHHHHHHHHHHHHh
Confidence 999998 8999999999999999999999999999999999999999999998 555566666666555443
No 17
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.5e-31 Score=193.90 Aligned_cols=119 Identities=33% Similarity=0.762 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEecccccCCc
Q 031652 3 ASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNV 82 (155)
Q Consensus 3 ~a~~RL~~E~~~l~~~~~~~~~i~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPni 82 (155)
.|.|||++||+.|.+++ .++|.+.+..+|+++||.+|.||+||||+||.|+.+|.||.+||++||.|++.| ||.
T Consensus 5 ~a~kRl~keY~~l~k~P--v~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiT----PNG 78 (244)
T KOG0894|consen 5 AAVKRLQKEYRALCKDP--VPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMIT----PNG 78 (244)
T ss_pred HHHHHHHHHHHHHHhCC--chhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEEC----CCC
Confidence 67899999999999999 999999999999999999999999999999999999999999999999999999 888
Q ss_pred cCCC-CeEEccCCC---CCCCCcCCHHHHHHHHHHHhcC--CCCCCCcchh
Q 031652 83 HFKT-GEICLDILK---NAWSPAWTLQSVCRAIIALMAH--PEPDSPLNCD 127 (155)
Q Consensus 83 ~~~~-G~icl~~l~---~~W~p~~~i~~iL~~i~~~l~~--p~~~~p~n~e 127 (155)
.+.. -++||++.+ +.|+|+++|.+||.+|.++|.+ |...+..-.+
T Consensus 79 RFktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~pTtGSI~tS~ 129 (244)
T KOG0894|consen 79 RFKTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSPTTGSIETSD 129 (244)
T ss_pred ceecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCCccCcccccH
Confidence 7665 479998776 9999999999999999999986 3444443333
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.5e-31 Score=181.40 Aligned_cols=113 Identities=35% Similarity=0.703 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeccc-ccC
Q 031652 2 QASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKI-FHP 80 (155)
Q Consensus 2 ~~a~~RL~~E~~~l~~~~~~~~~i~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i-~HP 80 (155)
..|++||++|+.+++.++ +.|+... ..+|+.+|.+.+.|.+||.|+|..|.+.+.||+.||++.|.|.|..++ .||
T Consensus 14 ~~at~RLqKEl~e~q~~p--P~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HP 90 (161)
T KOG0427|consen 14 KIATNRLQKELSEWQNNP--PTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHP 90 (161)
T ss_pred HHHHHHHHHHHHHHhcCC--CCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCC
Confidence 378999999999999999 9999888 678999999999999999999999999999999999999999999886 899
Q ss_pred CccCCCCeEEccCCCCCCCCcCCHHHHHHHHHHHhcCC
Q 031652 81 NVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHP 118 (155)
Q Consensus 81 ni~~~~G~icl~~l~~~W~p~~~i~~iL~~i~~~l~~p 118 (155)
|| |.+|.|||++|.++|+|++++.+|.++|.+||.+-
T Consensus 91 Hi-YSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs 127 (161)
T KOG0427|consen 91 HI-YSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSS 127 (161)
T ss_pred ce-ecCCeEEEEeecccCCcchhhHHHHHHHHHHHccC
Confidence 99 69999999999999999999999999999999864
No 19
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-31 Score=192.88 Aligned_cols=125 Identities=37% Similarity=0.708 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEecccccCCcc
Q 031652 4 SRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVH 83 (155)
Q Consensus 4 a~~RL~~E~~~l~~~~~~~~~i~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPni~ 83 (155)
..+.+.+|++++...+ +.||.|.++++|+....+.|.||.||||++|.|+..+.+..+||.+||+-.|.|+||||||.
T Consensus 11 vik~~~kEl~~l~~~P--PdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa 88 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESP--PDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA 88 (223)
T ss_pred HHHHHHHHHHhcccCC--CCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc
Confidence 4688999999999999 99999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCCeEEccCCCCCCCCcCCHHHHHHHHHHHhcCCCCCCCcchhhhhh
Q 031652 84 FKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGMW 131 (155)
Q Consensus 84 ~~~G~icl~~l~~~W~p~~~i~~iL~~i~~~l~~p~~~~p~n~e~a~~ 131 (155)
.+|.||.+.|..+|+|..+|..||..|+.+|..|++++.+|.||++.
T Consensus 89 -aNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkm 135 (223)
T KOG0423|consen 89 -ANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKM 135 (223)
T ss_pred -cCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHH
Confidence 89999999999999999999999999999999999999999999873
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.5e-24 Score=160.42 Aligned_cols=108 Identities=32% Similarity=0.762 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEecccccCCc
Q 031652 3 ASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNV 82 (155)
Q Consensus 3 ~a~~RL~~E~~~l~~~~~~~~~i~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPni 82 (155)
.|.|||++|.++++ ++ ...+...+.++|+++|+++|+||.||-|+||+|+.+|.||.+||++||.+..+| ||.
T Consensus 11 paVkRlmkEa~El~-~P--td~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLT----pNG 83 (314)
T KOG0428|consen 11 PAVKRLMKEAAELK-DP--TDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLT----PNG 83 (314)
T ss_pred HHHHHHHHHHHHhc-Cc--hhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEc----CCC
Confidence 57899999999999 55 455667789999999999999999999999999999999999999999999999 888
Q ss_pred cCCCC-eEEccCCC---CCCCCcCCHHHHHHHHHHHhcC
Q 031652 83 HFKTG-EICLDILK---NAWSPAWTLQSVCRAIIALMAH 117 (155)
Q Consensus 83 ~~~~G-~icl~~l~---~~W~p~~~i~~iL~~i~~~l~~ 117 (155)
.++.+ +|||++.. +.|.|+++|.+.|++|..+|-.
T Consensus 84 RFE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt 122 (314)
T KOG0428|consen 84 RFEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPT 122 (314)
T ss_pred ceeeCceEEEEecCCCccccCcchhHHHHHHHHHccccC
Confidence 77755 79999886 8999999999999999998864
No 21
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.6e-22 Score=150.68 Aligned_cols=142 Identities=25% Similarity=0.379 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCC--CCCeEEEecccccCCcc
Q 031652 6 ARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPL--QPPQVRFLTKIFHPNVH 83 (155)
Q Consensus 6 ~RL~~E~~~l~~~~~~~~~i~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~--~pP~i~f~t~i~HPni~ 83 (155)
.-|+.|+..+.+.+ -+||++.|+-.|-+.|..+|+ ...|.|.||+|+|+|.+|++||. ..|+|.|.+.++||+|.
T Consensus 22 y~llAEf~lV~~ek--L~gIyviPSyan~l~WFGViF-vr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~ic 98 (258)
T KOG0429|consen 22 YALLAEFVLVCREK--LDGIYVIPSYANKLLWFGVIF-VRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLIC 98 (258)
T ss_pred HHHHHHHHHHHhcc--CCceEEcccccccceEEEEEE-EecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccC
Confidence 35788888888888 899999999999999999999 45568999999999999999994 58999999999999999
Q ss_pred CCCCeEEccCCCCCCCCcC-CHHHHHHHHHHHhcCCCCCCC--cchhhhhhHHHHHHHHHHHHHhccccccc
Q 031652 84 FKTGEICLDILKNAWSPAW-TLQSVCRAIIALMAHPEPDSP--LNCDSGMWTLFWYRLVEFISRYYPSVIMG 152 (155)
Q Consensus 84 ~~~G~icl~~l~~~W~p~~-~i~~iL~~i~~~l~~p~~~~p--~n~e~a~~~~~~~~~~~~~~k~~~~v~~~ 152 (155)
..++.+|++.....|.-.. ++..+|..+|..|.+|+.+.+ .|+|||. +|.+...+|+++++.+|..+
T Consensus 99 p~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~--l~~k~r~ef~~rvqe~vk~s 168 (258)
T KOG0429|consen 99 PKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAV--LYKKHRDEFRERVQECVKAS 168 (258)
T ss_pred CCccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHH--HHHHhHHHHHHHHHHHHHHH
Confidence 8999999988877797755 799999999999999987765 4999988 88899999999999998764
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=4.4e-17 Score=143.45 Aligned_cols=107 Identities=27% Similarity=0.593 Sum_probs=95.4
Q ss_pred HHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEecc--cccCCccCC
Q 031652 8 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTK--IFHPNVHFK 85 (155)
Q Consensus 8 L~~E~~~l~~~~~~~~~i~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~--i~HPni~~~ 85 (155)
.+.|++-+...- +.||.|...++.+....+.|.|+.||||.+|.|.|+|.||.+||.+||.+...+. +++||+ |.
T Consensus 856 ~~~~~~~~~~~~--~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnl-y~ 932 (1101)
T KOG0895|consen 856 VQTEWKILPLSL--PSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNL-YE 932 (1101)
T ss_pred HHHHHHhhhccC--CCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccc-cc
Confidence 344555555555 8899999999988888999999999999999999999999999999999999875 689999 69
Q ss_pred CCeEEccCCC-------CCCCCcCCHHHHHHHHHHHhcC
Q 031652 86 TGEICLDILK-------NAWSPAWTLQSVCRAIIALMAH 117 (155)
Q Consensus 86 ~G~icl~~l~-------~~W~p~~~i~~iL~~i~~~l~~ 117 (155)
+|++|+++|+ +-|+|+-++.++|.+||.++.+
T Consensus 933 ~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 933 DGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred ccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 9999999997 6799999999999999999775
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=7.5e-15 Score=129.57 Aligned_cols=111 Identities=32% Similarity=0.645 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEecc---cccCC
Q 031652 5 RARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTK---IFHPN 81 (155)
Q Consensus 5 ~~RL~~E~~~l~~~~~~~~~i~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~---i~HPn 81 (155)
.+|+++|++-+.++. ++++.+.+.+......++.|.||.||||++|.|.|+|.||..||..||.+.+++. .+.||
T Consensus 284 skrv~ke~~llskdl--pEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPN 361 (1101)
T KOG0895|consen 284 SKKVAKELKLLSKDL--PEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPN 361 (1101)
T ss_pred HHHHHHHhhhhcccC--CCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCC
Confidence 489999999999999 9999999999999999999999999999999999999999999999999999976 68999
Q ss_pred ccCCCCeEEccCCC-------CCCCCc-CCHHHHHHHHHHHhcCC
Q 031652 82 VHFKTGEICLDILK-------NAWSPA-WTLQSVCRAIIALMAHP 118 (155)
Q Consensus 82 i~~~~G~icl~~l~-------~~W~p~-~~i~~iL~~i~~~l~~p 118 (155)
. |.+|+||+++|. +.|+|. .++.++|..||.++.+-
T Consensus 362 l-Yn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 362 L-YNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred c-ccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 9 589999999885 679998 78999999999998754
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=7.5e-14 Score=97.04 Aligned_cols=111 Identities=27% Similarity=0.468 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEecCC-C--cceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEecccccCCc
Q 031652 6 ARLFKEYKEVQREKSADPDIQLVCDDS-N--IFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNV 82 (155)
Q Consensus 6 ~RL~~E~~~l~~~~~~~~~i~~~~~~~-n--~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPni 82 (155)
-||.+|+.+=++... +..++...+++ | +..|..+|.||+.|+||+.+|.+.|...++||..||+++|.+++--+.|
T Consensus 8 frlleele~g~kg~g-~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gv 86 (138)
T KOG0896|consen 8 FRLLEELEEGEKGIG-DGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGV 86 (138)
T ss_pred hhhhhhhcccccccc-CceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeeccc
Confidence 578888887766664 55566664443 3 5689999999999999999999999999999999999999999999998
Q ss_pred cCCCCeEEccCCC--CCCCCcCCHHHHHHHHHHHhcC
Q 031652 83 HFKTGEICLDILK--NAWSPAWTLQSVCRAIIALMAH 117 (155)
Q Consensus 83 ~~~~G~icl~~l~--~~W~p~~~i~~iL~~i~~~l~~ 117 (155)
+..+|.+.-..+. .+|...++++.+|..++..|..
T Consensus 87 n~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 87 NSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred ccCCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence 8778887764443 8899999999999999876554
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3e-10 Score=77.06 Aligned_cols=92 Identities=21% Similarity=0.327 Sum_probs=70.9
Q ss_pred EEEEEECCCCCCCCCCeEEEecccccCCccCCCCeEEccCCC-CCCCCcCCHHHHHHHHHHHhcCC--CCCCCcchhhhh
Q 031652 54 FQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILK-NAWSPAWTLQSVCRAIIALMAHP--EPDSPLNCDSGM 130 (155)
Q Consensus 54 f~~~i~fp~~YP~~pP~i~f~t~i~HPni~~~~G~icl~~l~-~~W~p~~~i~~iL~~i~~~l~~p--~~~~p~n~e~a~ 130 (155)
.-+.+.|+++||+.||.++...|+..-.-...+|.||+.++. ++|+.+++|+.++++|.+++... .+..+++.+-.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 456889999999999999999865443333568899999998 89999999999999999999886 46667776654
Q ss_pred hHHHHHHHHHHHHHhc
Q 031652 131 WTLFWYRLVEFISRYY 146 (155)
Q Consensus 131 ~~~~~~~~~~~~~k~~ 146 (155)
++...+..+.|.+-++
T Consensus 92 ~~s~~qa~~sfksLv~ 107 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQ 107 (122)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555555443
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.62 E-value=2e-07 Score=66.12 Aligned_cols=67 Identities=27% Similarity=0.675 Sum_probs=60.1
Q ss_pred CCcEEEEEEECCCCCCCCCCeEEEeccc---ccCCccCCCCeEEc---cCCCCCCCCcCCHHHHHHHHHHHhcC
Q 031652 50 EGGVFQLAFAVPEQYPLQPPQVRFLTKI---FHPNVHFKTGEICL---DILKNAWSPAWTLQSVCRAIIALMAH 117 (155)
Q Consensus 50 ~gg~f~~~i~fp~~YP~~pP~i~f~t~i---~HPni~~~~G~icl---~~l~~~W~p~~~i~~iL~~i~~~l~~ 117 (155)
.|+.+.++|.||++||..||.|....+. +-|||+ .+|.+|+ +..-+.|.|...+.++|.++..+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~-~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVE-SDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEc-CCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999998654 689996 7999999 67679999999999999999999984
No 27
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.61 E-value=2.8e-08 Score=70.07 Aligned_cols=90 Identities=24% Similarity=0.483 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCcE----------EEEEEECCCCCCCCCCeEEEe
Q 031652 5 RARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGV----------FQLAFAVPEQYPLQPPQVRFL 74 (155)
Q Consensus 5 ~~RL~~E~~~l~~~~~~~~~i~~~~~~~n~~~w~v~i~gp~~t~y~gg~----------f~~~i~fp~~YP~~pP~i~f~ 74 (155)
..||+.||..|.+... .+..+-..|.-.=..++||-|.|.+ |.+++.+|..||..||.|..
T Consensus 26 ~~RLKEEy~aLI~Yv~--------~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~l- 96 (161)
T PF08694_consen 26 VQRLKEEYQALIKYVE--------NNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIAL- 96 (161)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B--
T ss_pred HHHHHHHHHHHHHHHH--------hcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceec-
Confidence 4899999998776541 1112222232222334455444433 66788899999999999987
Q ss_pred cccccCCcc------CCCCeEEccCCC----CCCCCcCCHHHHH
Q 031652 75 TKIFHPNVH------FKTGEICLDILK----NAWSPAWTLQSVC 108 (155)
Q Consensus 75 t~i~HPni~------~~~G~icl~~l~----~~W~p~~~i~~iL 108 (155)
|-+| |.+|+||++..+ ..-.|.++|...|
T Consensus 97 -----PeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 97 -----PELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp -----GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred -----cccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 4333 678999999887 3447788887665
No 28
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=4.9e-06 Score=58.03 Aligned_cols=89 Identities=26% Similarity=0.534 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCcE----------EEEEEECCCCCCCCCCeEEEe
Q 031652 5 RARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGV----------FQLAFAVPEQYPLQPPQVRFL 74 (155)
Q Consensus 5 ~~RL~~E~~~l~~~~~~~~~i~~~~~~~n~~~w~v~i~gp~~t~y~gg~----------f~~~i~fp~~YP~~pP~i~f~ 74 (155)
.+||+.||+.+.... +.+.++-..|.-.-..++||-|-|.+ |.+++.+|-.||..+|.|..
T Consensus 29 vqrlkeey~sli~yv--------qnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeial- 99 (167)
T KOG3357|consen 29 VQRLKEEYQSLIAYV--------QNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIAL- 99 (167)
T ss_pred HHHHHHHHHHHHHHH--------HhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccc-
Confidence 479999999987655 22233444555444668888887755 66777789999999999987
Q ss_pred cccccCCcc------CCCCeEEccCCC-CCC---CCcCCHHHH
Q 031652 75 TKIFHPNVH------FKTGEICLDILK-NAW---SPAWTLQSV 107 (155)
Q Consensus 75 t~i~HPni~------~~~G~icl~~l~-~~W---~p~~~i~~i 107 (155)
|.+| |.+|+||+.-.. .-| .|.+++...
T Consensus 100 -----peldgktakmyrggkiclt~hfkplwarn~pkfgiaha 137 (167)
T KOG3357|consen 100 -----PELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHA 137 (167)
T ss_pred -----cccCchhhhhhcCceEeeccccchhhhhcCcchhHHHH
Confidence 5554 678999997665 445 455666544
No 29
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.15 E-value=9.1e-06 Score=56.79 Aligned_cols=78 Identities=23% Similarity=0.494 Sum_probs=51.8
Q ss_pred cceEEEEEECCCCCCCCCcEE--EEEEECCCCCCCCCCeEEEeccc-----ccCCccCCCCeEEccCCCCCCCC-cCCHH
Q 031652 34 IFKWTALIKGPSETPYEGGVF--QLAFAVPEQYPLQPPQVRFLTKI-----FHPNVHFKTGEICLDILKNAWSP-AWTLQ 105 (155)
Q Consensus 34 ~~~w~v~i~gp~~t~y~gg~f--~~~i~fp~~YP~~pP~i~f~t~i-----~HPni~~~~G~icl~~l~~~W~p-~~~i~ 105 (155)
++...++|. -.|+|..| .+.|.+|.+||..||.+...... -+.+|| .+|++.+..+ ++|.+ ..++.
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd-~~G~v~~pyL-~~W~~~~s~L~ 105 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVD-SNGRVYLPYL-QNWNPPSSNLV 105 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB--TTSBB-SHHH-HT--TTTS-HH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeEC-CCCCEeCchh-ccCCCCCCCHH
Confidence 444444443 23677666 57888999999999999876321 244997 8999998888 55776 77899
Q ss_pred HHHHHHHHHhcC
Q 031652 106 SVCRAIIALMAH 117 (155)
Q Consensus 106 ~iL~~i~~~l~~ 117 (155)
+++..++..|.+
T Consensus 106 ~lv~~l~~~F~~ 117 (121)
T PF05743_consen 106 DLVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHHCCCH
T ss_pred HHHHHHHHHHhH
Confidence 999888887754
No 30
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.008 Score=48.55 Aligned_cols=70 Identities=24% Similarity=0.527 Sum_probs=54.3
Q ss_pred CCCCCcEEE--EEEECCCCCCCCCCeEEEec-c----cccCCccCCCCeEEccCCCCCCCC-cCCHHHHHHHHHHHhcCC
Q 031652 47 TPYEGGVFQ--LAFAVPEQYPLQPPQVRFLT-K----IFHPNVHFKTGEICLDILKNAWSP-AWTLQSVCRAIIALMAHP 118 (155)
Q Consensus 47 t~y~gg~f~--~~i~fp~~YP~~pP~i~f~t-~----i~HPni~~~~G~icl~~l~~~W~p-~~~i~~iL~~i~~~l~~p 118 (155)
.+|.|.+|. +.|.+.+.||..||.+.... . --|-||| .+|+|.|..|. .|.+ +..+..++.-+.+.|.++
T Consensus 61 ~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd-~nG~V~LPYLh-~W~~pssdLv~Liq~l~a~f~~~ 138 (365)
T KOG2391|consen 61 VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVD-PNGKVYLPYLH-NWDPPSSDLVGLIQELIAAFSED 138 (365)
T ss_pred ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccC-CCCeEechhhc-cCCCccchHHHHHHHHHHHhcCC
Confidence 456676655 67779999999999997652 1 1489998 89999999994 5755 667888888888888764
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.75 E-value=0.022 Score=39.78 Aligned_cols=89 Identities=19% Similarity=0.372 Sum_probs=60.9
Q ss_pred CCeEEEecCCCcceEEEEEEC--CCCCCCCCcEEEEEEECCCCCCCCCCeEEEecccccCCccCCCC-eE--EccC----
Q 031652 23 PDIQLVCDDSNIFKWTALIKG--PSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTG-EI--CLDI---- 93 (155)
Q Consensus 23 ~~i~~~~~~~n~~~w~v~i~g--p~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPni~~~~G-~i--cl~~---- 93 (155)
.|+.++...+.-..|.+ |.| -+.+.|....-.+-|.+|..||..+|.+.+..| .+...+| .+ |-+.
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P----~L~~~~G~~iP~~~~~~~~~ 86 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYP----PLKLADGGPIPNAAEVTQTF 86 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECC----ceEccCCCcCCchhcchhhc
Confidence 35667755555556655 554 467779999999999999999999998877764 3322232 23 3221
Q ss_pred ----------CCCCCCCcC-CHHHHHHHHHHHhc
Q 031652 94 ----------LKNAWSPAW-TLQSVCRAIIALMA 116 (155)
Q Consensus 94 ----------l~~~W~p~~-~i~~iL~~i~~~l~ 116 (155)
....|.|.. +|.+.|..|...|.
T Consensus 87 ~G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 87 DGRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred CCeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 125688876 68888888887664
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.63 E-value=0.0093 Score=40.08 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEEC--CCCCCCCCcEEEEEEECCCCCCCCCCeEEEecc
Q 031652 6 ARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKG--PSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTK 76 (155)
Q Consensus 6 ~RL~~E~~~l~~~~~~~~~i~~~~~~~n~~~w~v~i~g--p~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~ 76 (155)
.+...|+..|+..- +..+ ......+...+.+.+.+ ...+.-....+.+.+.||++||..+|.|...+.
T Consensus 4 e~~~~EieaL~sIy--~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 4 EQQEEEIEALQSIY--PDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHS--SSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHc--CCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 45677888888776 4333 22334455566666632 234444567899999999999999999998764
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.80 E-value=0.089 Score=34.91 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=22.3
Q ss_pred CCcEEEEEEECCCCCCCCCCeEEEec
Q 031652 50 EGGVFQLAFAVPEQYPLQPPQVRFLT 75 (155)
Q Consensus 50 ~gg~f~~~i~fp~~YP~~pP~i~f~t 75 (155)
....+.+.+.||++||..+|.|.+.+
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEEC
Confidence 34568899999999999999998865
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.70 E-value=0.018 Score=42.17 Aligned_cols=62 Identities=24% Similarity=0.506 Sum_probs=49.5
Q ss_pred EEEEECCCCCCCCCCeEEEecccc---cCCccCCC-----CeEEccCCC-CCCCCcCCHHHHHHHHHHHhcC
Q 031652 55 QLAFAVPEQYPLQPPQVRFLTKIF---HPNVHFKT-----GEICLDILK-NAWSPAWTLQSVCRAIIALMAH 117 (155)
Q Consensus 55 ~~~i~fp~~YP~~pP~i~f~t~i~---HPni~~~~-----G~icl~~l~-~~W~p~~~i~~iL~~i~~~l~~ 117 (155)
.+.|.|+.+||..+|.+.+....| +||+. .+ ..+|+---. ..|.+..|++.+|..|...|.+
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~-~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQN-PGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccC-CCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 467899999999999877775532 57774 44 589996554 7799999999999999988875
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=90.21 E-value=0.98 Score=36.20 Aligned_cols=85 Identities=21% Similarity=0.359 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEecccccCCccCC
Q 031652 6 ARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFK 85 (155)
Q Consensus 6 ~RL~~E~~~l~~~~~~~~~i~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPni~~~ 85 (155)
.+|.+|+.++..+. .+.+. .++++....+.+. -+...+.++|.+|.+||.++|.+...-| ....
T Consensus 102 s~ll~EIe~IGW~k----l~~i~-~d~~ls~i~l~~~------D~~R~H~l~l~l~~~yp~~~p~~~~~~P-~~~~---- 165 (291)
T PF09765_consen 102 SNLLKEIEAIGWDK----LVQIQ-FDDDLSTIKLKIF------DSSRQHYLELKLPSNYPFEPPSCSLDLP-IPFS---- 165 (291)
T ss_dssp -CHHHHHHHHHCGC----CEEEE-E-CCCSEEEEEEE------TTCEEEEEEEETTTTTTTSEEEECS-TT-S-HH----
T ss_pred HHHHHHHHHhcccc----ceEEe-cCCCccEEEEEEE------cCCceEEEEEEECCCCCCCCceeeCCCC-cchh----
Confidence 57888999888777 23332 3567888888877 2235778999999999999997432111 1111
Q ss_pred CCeEEccCCCCCCCC-cCCHHHHHHHHHHHhc
Q 031652 86 TGEICLDILKNAWSP-AWTLQSVCRAIIALMA 116 (155)
Q Consensus 86 ~G~icl~~l~~~W~p-~~~i~~iL~~i~~~l~ 116 (155)
..|.+ ..++.+++.+.+..+.
T Consensus 166 ----------~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 166 ----------LSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp ----------HHHHCHT-SHHHHHHHHHHHHH
T ss_pred ----------hhhcccccCHHHHHHHHHHHHH
Confidence 23877 6688888777766554
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=87.34 E-value=2.8 Score=32.04 Aligned_cols=22 Identities=32% Similarity=0.683 Sum_probs=19.4
Q ss_pred EEEEEEECCCCCCCCCCeEEEe
Q 031652 53 VFQLAFAVPEQYPLQPPQVRFL 74 (155)
Q Consensus 53 ~f~~~i~fp~~YP~~pP~i~f~ 74 (155)
.+.+.+.++++||..+|-|.+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred cEEEEEEccCCCCCCCcceecc
Confidence 7889999999999999999443
No 37
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.79 E-value=4.4 Score=36.68 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCC-CCeEEEecc
Q 031652 6 ARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQ-PPQVRFLTK 76 (155)
Q Consensus 6 ~RL~~E~~~l~~~~~~~~~i~~~~~~~n~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~-pP~i~f~t~ 76 (155)
+-|..|+.-|-.. .+.+.++-.+---..-.+.+.||--..-.....++.|.||.+||.+ +|.++|..+
T Consensus 423 QnLgeE~S~Ig~k---~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 423 QNLGEEFSLIGVK---IRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhHHhHHhHhhcc---ccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 3455555554433 2345555333334556667776643332234467899999999985 799999753
No 38
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=66.91 E-value=15 Score=30.49 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=46.7
Q ss_pred CccCCCCeEEccCCC---CCCCCcC--CHHHHHHHHHHHhcCCCCCCCcchhhh---hhHHHHHHHHHHHHHhccccccc
Q 031652 81 NVHFKTGEICLDILK---NAWSPAW--TLQSVCRAIIALMAHPEPDSPLNCDSG---MWTLFWYRLVEFISRYYPSVIMG 152 (155)
Q Consensus 81 ni~~~~G~icl~~l~---~~W~p~~--~i~~iL~~i~~~l~~p~~~~p~n~e~a---~~~~~~~~~~~~~~k~~~~v~~~ 152 (155)
+|++.+|+||..+-. +...|.. +|.+++..|.++ .+.....-...+.| .+..|....+.|++++-++=..+
T Consensus 331 cVHP~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~-nd~~~~~e~~~d~~~~~aL~pyv~~Fe~F~s~l~~~~~g~ 409 (412)
T KOG2851|consen 331 CVHPKTGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL-NDEKEYTENRKDLARHGALSPYVEVFEAFVSALIKSEKGS 409 (412)
T ss_pred cccCCCCceEeecchhhccccCcccCCcHHHHHHHHhhc-ccccccccchhhhhhccccchHHHHHHHHHHHHHHhhhcc
Confidence 667789999997653 6677754 899999999887 22122222222322 35568888999998887665444
No 39
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=66.86 E-value=13 Score=28.87 Aligned_cols=40 Identities=28% Similarity=0.446 Sum_probs=26.0
Q ss_pred cccccC---CccCCCCeEEccCCCCCCCCcC-CHHHHHHHHHHHhcCCC
Q 031652 75 TKIFHP---NVHFKTGEICLDILKNAWSPAW-TLQSVCRAIIALMAHPE 119 (155)
Q Consensus 75 t~i~HP---ni~~~~G~icl~~l~~~W~p~~-~i~~iL~~i~~~l~~p~ 119 (155)
|++||+ || +.+|+||+.... .|.. ++.+ +......|.+-.
T Consensus 131 T~L~~aPffNV-~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~ 174 (228)
T TIGR03737 131 TKLYQAPLFNV-WSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSR 174 (228)
T ss_pred CeeccCCcCcc-CCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCc
Confidence 346773 88 589999997653 4543 5666 666666655433
No 40
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=65.73 E-value=14 Score=27.20 Aligned_cols=41 Identities=24% Similarity=0.385 Sum_probs=24.2
Q ss_pred eccccc---CCccCCCCeEEccCCCCCCCCcCCHHHHHHHH-HHHhcCC
Q 031652 74 LTKIFH---PNVHFKTGEICLDILKNAWSPAWTLQSVCRAI-IALMAHP 118 (155)
Q Consensus 74 ~t~i~H---Pni~~~~G~icl~~l~~~W~p~~~i~~iL~~i-~~~l~~p 118 (155)
.|++|| +|| +.+|.||+.... .|.....+.+... ..+|.++
T Consensus 89 ~T~Ly~aPf~NV-~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ 133 (175)
T PF14460_consen 89 DTPLYHAPFFNV-YSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSP 133 (175)
T ss_pred CCeeEeCCcccc-CCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCC
Confidence 355677 499 589999997642 3444333344444 4455555
No 41
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=64.57 E-value=22 Score=22.98 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=27.7
Q ss_pred ceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEecc
Q 031652 35 FKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTK 76 (155)
Q Consensus 35 ~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~ 76 (155)
.+|.|.+.|+.+.....-+=++...+.+.|+. |...+..+
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 47999999988765555667788899998886 66666554
No 42
>PRK11700 hypothetical protein; Provisional
Probab=64.03 E-value=36 Score=25.57 Aligned_cols=72 Identities=18% Similarity=0.435 Sum_probs=48.4
Q ss_pred CcceEEEEE---ECCCCCCC-CCcEEEEEEECCC--------------CCCCCCCeEEEec--------ccccCCccCCC
Q 031652 33 NIFKWTALI---KGPSETPY-EGGVFQLAFAVPE--------------QYPLQPPQVRFLT--------KIFHPNVHFKT 86 (155)
Q Consensus 33 n~~~w~v~i---~gp~~t~y-~gg~f~~~i~fp~--------------~YP~~pP~i~f~t--------~i~HPni~~~~ 86 (155)
....|.+.. .=|.+.-| .-|+=|+++.+|- +.|..++-|++.. ..-+|-|-..+
T Consensus 87 ~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~ 166 (187)
T PRK11700 87 QVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTD 166 (187)
T ss_pred eeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEee
Confidence 445665544 33555555 5578899999883 3455667777763 35788887788
Q ss_pred CeEEccCCCCCCCCcCCHHHHHHH
Q 031652 87 GEICLDILKNAWSPAWTLQSVCRA 110 (155)
Q Consensus 87 G~icl~~l~~~W~p~~~i~~iL~~ 110 (155)
|.+|+.+. -+++.+|+.+
T Consensus 167 ~~vcIK~H------P~slk~IV~S 184 (187)
T PRK11700 167 GGICIKFH------PHSIKEIVAS 184 (187)
T ss_pred CCEEEEEc------CccHHHHHHh
Confidence 99999876 3677777654
No 43
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=63.39 E-value=25 Score=28.83 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=22.0
Q ss_pred CcEEEEEEECCCCCCCCCCeEEEec
Q 031652 51 GGVFQLAFAVPEQYPLQPPQVRFLT 75 (155)
Q Consensus 51 gg~f~~~i~fp~~YP~~pP~i~f~t 75 (155)
+-.|-++|.+|..||...|.++|.+
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe
Confidence 3467889999999999999999986
No 44
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=57.51 E-value=17 Score=25.79 Aligned_cols=24 Identities=29% Similarity=0.724 Sum_probs=22.1
Q ss_pred CcEEEEEEECCCCCC-CCCCeEEEe
Q 031652 51 GGVFQLAFAVPEQYP-LQPPQVRFL 74 (155)
Q Consensus 51 gg~f~~~i~fp~~YP-~~pP~i~f~ 74 (155)
.|.|.|.-.+|-.|| ..||.|.|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 488999999999999 999999996
No 45
>smart00340 HALZ homeobox associated leucin zipper.
Probab=55.42 E-value=16 Score=20.64 Aligned_cols=16 Identities=38% Similarity=0.368 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhcCC
Q 031652 5 RARLFKEYKEVQREKS 20 (155)
Q Consensus 5 ~~RL~~E~~~l~~~~~ 20 (155)
.+||++|+.++.....
T Consensus 21 NrRL~ke~~eLralk~ 36 (44)
T smart00340 21 NRRLQKEVQELRALKL 36 (44)
T ss_pred HHHHHHHHHHHHhccc
Confidence 4899999999997763
No 46
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=54.21 E-value=21 Score=26.76 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=22.4
Q ss_pred CcEEEEEEECCCCCCCCCCeEEEec
Q 031652 51 GGVFQLAFAVPEQYPLQPPQVRFLT 75 (155)
Q Consensus 51 gg~f~~~i~fp~~YP~~pP~i~f~t 75 (155)
.|.|.|+=++|--||..+|.|.|.-
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 4788999999999999999999963
No 47
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=50.66 E-value=24 Score=28.89 Aligned_cols=66 Identities=26% Similarity=0.411 Sum_probs=43.7
Q ss_pred cceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEe-cccccCCccCCCCeEEccCCCCCCCCcC--CHHHHHHH
Q 031652 34 IFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFL-TKIFHPNVHFKTGEICLDILKNAWSPAW--TLQSVCRA 110 (155)
Q Consensus 34 ~~~w~v~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~-t~i~HPni~~~~G~icl~~l~~~W~p~~--~i~~iL~~ 110 (155)
...+.+.|. |.|...+-+|.|...||..||-+.|. ..-|+|-.+ . +..+ .+|++.- ++..++..
T Consensus 53 ~DRF~l~IP------y~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~---l~~L-~~Wd~~dp~~Ll~li~E 119 (333)
T PF06113_consen 53 CDRFKLLIP------YCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K---LPSL-VNWDPSDPNCLLNLISE 119 (333)
T ss_pred cceEEEEee------ccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h---cchh-hcCCCCCchHHHHHHHH
Confidence 345555554 89999999999999999999999996 334788432 1 1222 4686643 34455444
Q ss_pred HH
Q 031652 111 II 112 (155)
Q Consensus 111 i~ 112 (155)
+.
T Consensus 120 L~ 121 (333)
T PF06113_consen 120 LR 121 (333)
T ss_pred HH
Confidence 43
No 48
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=45.68 E-value=35 Score=24.77 Aligned_cols=25 Identities=20% Similarity=0.555 Sum_probs=22.1
Q ss_pred CcEEEEEEECCCCCC-----CCCCeEEEec
Q 031652 51 GGVFQLAFAVPEQYP-----LQPPQVRFLT 75 (155)
Q Consensus 51 gg~f~~~i~fp~~YP-----~~pP~i~f~t 75 (155)
.|.|.|+=.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 478999999999999 8999999963
No 49
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=44.37 E-value=22 Score=27.11 Aligned_cols=56 Identities=21% Similarity=0.466 Sum_probs=43.5
Q ss_pred CCCCeEEEecccccCCcc-CCCCeEEccCCCCCC--CCcCCHHHHHHHHHHHhcCCCCC
Q 031652 66 LQPPQVRFLTKIFHPNVH-FKTGEICLDILKNAW--SPAWTLQSVCRAIIALMAHPEPD 121 (155)
Q Consensus 66 ~~pP~i~f~t~i~HPni~-~~~G~icl~~l~~~W--~p~~~i~~iL~~i~~~l~~p~~~ 121 (155)
..||.|.|-.+.|...|| +..|.|--.+.+.+| .|+-.+.+-|..|..++-.|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 468999999999998886 445666556666666 67888999999999988887643
No 50
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=43.89 E-value=53 Score=24.62 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCC
Q 031652 4 SRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSET 47 (155)
Q Consensus 4 a~~RL~~E~~~l~~~~~~~~~i~~~~~~~n~~~w~v~i~gp~~t 47 (155)
..+|+++|++.+.+.. ...++..|.-+..-.+.+.++.-+|+
T Consensus 120 ~~~~iq~EIraviRQI--tasVtfLP~Le~~ctFdvLiyTdkD~ 161 (203)
T KOG3285|consen 120 DLKRIQNEIRAVIRQI--TASVTFLPLLEEICTFDVLIYTDKDT 161 (203)
T ss_pred HHHHHHHHHHHHHHHH--hhheeecccccceeEEEEEEEeCCCc
Confidence 3589999999999998 77888887777777888887754443
No 51
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=43.41 E-value=23 Score=31.06 Aligned_cols=30 Identities=30% Similarity=0.703 Sum_probs=24.5
Q ss_pred CCCCCCcEEEEEEECCCCCCC---CCCeEEEecc
Q 031652 46 ETPYEGGVFQLAFAVPEQYPL---QPPQVRFLTK 76 (155)
Q Consensus 46 ~t~y~gg~f~~~i~fp~~YP~---~pP~i~f~t~ 76 (155)
-+||.=|.|.+ +.+|++||+ +-|.++|.||
T Consensus 247 ~GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 247 FGPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred cCCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 35777788985 678999997 5799999995
No 52
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=39.04 E-value=29 Score=24.46 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=22.4
Q ss_pred cCCCcceEEEEEECCCCCCCC-CcEEEEEEECC
Q 031652 30 DDSNIFKWTALIKGPSETPYE-GGVFQLAFAVP 61 (155)
Q Consensus 30 ~~~n~~~w~v~i~gp~~t~y~-gg~f~~~i~fp 61 (155)
...|...|.|++.|++|++.. +..|-+.+.|.
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF~ 75 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRKSNNTFMYKFIFY 75 (139)
T ss_pred cCCCCcceEEEEECCCCcceeccccchheeeHH
Confidence 446788899999999998874 44555544443
No 53
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.21 E-value=15 Score=27.70 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=26.0
Q ss_pred CCeEEccCCCCCCCCcCCHHHHHHHHHHHhc
Q 031652 86 TGEICLDILKNAWSPAWTLQSVCRAIIALMA 116 (155)
Q Consensus 86 ~G~icl~~l~~~W~p~~~i~~iL~~i~~~l~ 116 (155)
++.+|++++++-|+|.+|+++.+.-++..+.
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~ 165 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCVL 165 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999998877765544
No 54
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=32.88 E-value=59 Score=26.46 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.3
Q ss_pred cEEEEEEECCCCCCCCCCeEEEecc
Q 031652 52 GVFQLAFAVPEQYPLQPPQVRFLTK 76 (155)
Q Consensus 52 g~f~~~i~fp~~YP~~pP~i~f~t~ 76 (155)
-.+.+.+..++.||...|.|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 5678899999999999999999875
No 55
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=32.65 E-value=1.4e+02 Score=21.15 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCcchhhhhhHHHHHHHHHHHHHhccc
Q 031652 104 LQSVCRAIIALMAHPEPDSPLNCDSGMWTLFWYRLVEFISRYYPS 148 (155)
Q Consensus 104 i~~iL~~i~~~l~~p~~~~p~n~e~a~~~~~~~~~~~~~~k~~~~ 148 (155)
-..|+..++..+..|. ++|--.++. ...++.+.+|+.+|++.
T Consensus 41 T~~Vi~tlr~~i~lpk-d~p~~~~a~--~~ar~~indyvsrYRr~ 82 (135)
T TIGR03044 41 TLAVIQTLREAIDLPD-DDPNKSEAQ--AEARQLINDYISRYRRR 82 (135)
T ss_pred HHHHHHHHHHHHcCCC-CCccHHHHH--HHHHHHHHHHHHHhcCC
Confidence 4567778887777654 445555553 36778999999999876
No 56
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=32.41 E-value=68 Score=24.11 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=20.9
Q ss_pred CcEEEEEEECCCCCCC-----CCCeEEEe
Q 031652 51 GGVFQLAFAVPEQYPL-----QPPQVRFL 74 (155)
Q Consensus 51 gg~f~~~i~fp~~YP~-----~pP~i~f~ 74 (155)
.|.|.|+=++|-.||. .||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4779999999999998 88988885
No 57
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=30.78 E-value=77 Score=23.66 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.4
Q ss_pred CcEEEEEEECCCCCCC-----CCCeEEEe
Q 031652 51 GGVFQLAFAVPEQYPL-----QPPQVRFL 74 (155)
Q Consensus 51 gg~f~~~i~fp~~YP~-----~pP~i~f~ 74 (155)
.|.|.|+=.+|--||. .||.|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3779999999999995 88888885
No 58
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=30.39 E-value=1.2e+02 Score=23.84 Aligned_cols=47 Identities=17% Similarity=0.427 Sum_probs=31.3
Q ss_pred CCcceEEEEEECCCCCCCCC----cEEEEEEECC-----CCCCCCCCeEEEeccccc
Q 031652 32 SNIFKWTALIKGPSETPYEG----GVFQLAFAVP-----EQYPLQPPQVRFLTKIFH 79 (155)
Q Consensus 32 ~n~~~w~v~i~gp~~t~y~g----g~f~~~i~fp-----~~YP~~pP~i~f~t~i~H 79 (155)
.|..-|.+..+ ..||--.. ..|+..+.+. .|-|++||+|..+++-|.
T Consensus 100 KDp~PWkl~Yr-V~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft 155 (276)
T PF00845_consen 100 KDPIPWKLYYR-VEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFT 155 (276)
T ss_pred CCCCCeEEEEE-eecCccccceeeeeeeceeeecccccccccccCCCceEeeecccC
Confidence 35556888777 44443333 3356666654 678999999999987543
No 59
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=27.56 E-value=75 Score=19.12 Aligned_cols=20 Identities=20% Similarity=0.519 Sum_probs=12.5
Q ss_pred CCCCCcCCHHHHHHHHHHHh
Q 031652 96 NAWSPAWTLQSVCRAIIALM 115 (155)
Q Consensus 96 ~~W~p~~~i~~iL~~i~~~l 115 (155)
=+|.|.++|++++.......
T Consensus 36 LgW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp C----SSSHHHHHHHHHHHH
T ss_pred hCCCcCCCHHHHHHHHHHHH
Confidence 37999999999998776543
No 60
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=26.59 E-value=49 Score=20.03 Aligned_cols=15 Identities=33% Similarity=0.346 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhcC
Q 031652 5 RARLFKEYKEVQREK 19 (155)
Q Consensus 5 ~~RL~~E~~~l~~~~ 19 (155)
.+||++|+.++--..
T Consensus 36 r~rL~kEL~d~D~~~ 50 (59)
T PF12065_consen 36 RQRLRKELQDMDMCF 50 (59)
T ss_pred HHHHHHHHHHccccc
Confidence 478999998876443
No 61
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=22.99 E-value=39 Score=18.28 Aligned_cols=15 Identities=27% Similarity=0.910 Sum_probs=10.5
Q ss_pred cccCCccCCCCe-EEcc
Q 031652 77 IFHPNVHFKTGE-ICLD 92 (155)
Q Consensus 77 i~HPni~~~~G~-icl~ 92 (155)
-|||.. +.+|+ .|-.
T Consensus 7 ~yHP~~-~~~G~W~CC~ 22 (36)
T smart00107 7 KYHPSF-WVDGKWLCCQ 22 (36)
T ss_pred ccCCCc-eeCCeEccCC
Confidence 389999 57775 5553
No 62
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=22.85 E-value=2.9e+02 Score=21.11 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhcC-CCCCCeEEE
Q 031652 3 ASRARLFKEYKEVQREK-SADPDIQLV 28 (155)
Q Consensus 3 ~a~~RL~~E~~~l~~~~-~~~~~i~~~ 28 (155)
++..||...++++++.- +++.|+.+.
T Consensus 9 s~~eR~~e~~~~~k~~L~~a~~GW~~~ 35 (235)
T PF14135_consen 9 SPAERINEALAEYKKILTSAPNGWKLE 35 (235)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 57789988777666554 114444443
No 63
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=22.23 E-value=1.9e+02 Score=24.64 Aligned_cols=14 Identities=21% Similarity=0.479 Sum_probs=11.6
Q ss_pred EEEEEECCCCCCCC
Q 031652 54 FQLAFAVPEQYPLQ 67 (155)
Q Consensus 54 f~~~i~fp~~YP~~ 67 (155)
..+.+.||.+|+..
T Consensus 211 k~i~vtFP~dy~a~ 224 (441)
T COG0544 211 KDIKVTFPEDYHAE 224 (441)
T ss_pred eEEEEEcccccchh
Confidence 55889999999964
No 64
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=21.95 E-value=1.3e+02 Score=24.12 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=20.6
Q ss_pred CcEEEEEEECCCCCC------------------CCCCeEEEe
Q 031652 51 GGVFQLAFAVPEQYP------------------LQPPQVRFL 74 (155)
Q Consensus 51 gg~f~~~i~fp~~YP------------------~~pP~i~f~ 74 (155)
.|.|.|+=.+|.-|| ..||.|.|.
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 478999999999997 678999885
No 65
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=21.14 E-value=89 Score=25.69 Aligned_cols=51 Identities=10% Similarity=0.179 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHhc-CCCCCCCcchhhhhhHHHHHHHHHHHHHhccccccc
Q 031652 102 WTLQSVCRAIIALMA-HPEPDSPLNCDSGMWTLFWYRLVEFISRYYPSVIMG 152 (155)
Q Consensus 102 ~~i~~iL~~i~~~l~-~p~~~~p~n~e~a~~~~~~~~~~~~~~k~~~~v~~~ 152 (155)
.++..||.-|+..|. +||.++..-+||..-+.|.+-+.+....+-+++-.|
T Consensus 192 QGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS 243 (370)
T KOG4567|consen 192 QGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDS 243 (370)
T ss_pred hhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 389999999999887 678888888888878888888888888777766543
No 66
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=20.51 E-value=1.5e+02 Score=23.73 Aligned_cols=24 Identities=25% Similarity=0.766 Sum_probs=20.8
Q ss_pred CcEEEEEEECCCCCC------------------CCCCeEEEe
Q 031652 51 GGVFQLAFAVPEQYP------------------LQPPQVRFL 74 (155)
Q Consensus 51 gg~f~~~i~fp~~YP------------------~~pP~i~f~ 74 (155)
.|.|.|.=..|.-|| ..||.|.|.
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 478999999999998 579999885
No 67
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=20.17 E-value=2e+02 Score=24.07 Aligned_cols=72 Identities=19% Similarity=0.360 Sum_probs=44.4
Q ss_pred CCCcceEE--EEEECCCCCCC----CCcEEEEEEECCCCCCCCCCeEEEecccccCCccCCCCeEEccCCCCCCCCcCC-
Q 031652 31 DSNIFKWT--ALIKGPSETPY----EGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWT- 103 (155)
Q Consensus 31 ~~n~~~w~--v~i~gp~~t~y----~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPni~~~~G~icl~~l~~~W~p~~~- 103 (155)
+.|+-.|+ +.++||+||-= ++-.-++.|...+.|+..- .. .|..--++..|.+.-+
T Consensus 170 ntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~----li-------------EinshsLFSKWFsESgK 232 (423)
T KOG0744|consen 170 NTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQ----LI-------------EINSHSLFSKWFSESGK 232 (423)
T ss_pred CCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccce----EE-------------EEehhHHHHHHHhhhhh
Confidence 46777775 45689999821 2233678888777776330 00 1111123466876554
Q ss_pred -HHHHHHHHHHHhcCCC
Q 031652 104 -LQSVCRAIIALMAHPE 119 (155)
Q Consensus 104 -i~~iL~~i~~~l~~p~ 119 (155)
|..++..|+.+..+++
T Consensus 233 lV~kmF~kI~ELv~d~~ 249 (423)
T KOG0744|consen 233 LVAKMFQKIQELVEDRG 249 (423)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 7888899999988864
Done!