Query 031653
Match_columns 155
No_of_seqs 184 out of 866
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 05:00:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_R 40S ribosomal protein S 100.0 1.3E-76 4.4E-81 467.0 -12.1 154 1-155 1-154 (154)
2 3u5c_P 40S ribosomal protein S 100.0 2E-70 7E-75 427.2 8.9 138 15-155 5-142 (142)
3 3j20_T 30S ribosomal protein S 100.0 1.8E-66 6.3E-71 401.0 4.5 130 22-155 3-132 (132)
4 2xzm_S RPS15E; ribosome, trans 100.0 1.8E-64 6.3E-69 394.5 6.3 132 18-149 4-144 (144)
5 3bbn_S Ribosomal protein S19; 100.0 3.7E-39 1.3E-43 235.6 6.2 85 55-143 1-88 (92)
6 3a1p_B 30S ribosomal protein S 100.0 3.9E-39 1.3E-43 236.0 4.3 83 55-141 1-86 (93)
7 3i1m_S 30S ribosomal protein S 100.0 6.6E-39 2.2E-43 234.4 5.2 82 55-140 1-85 (92)
8 3r8n_S 30S ribosomal protein S 100.0 5.8E-37 2E-41 218.7 4.7 75 57-135 1-78 (79)
9 3a5t_A Transcription factor MA 75.4 1.5 5.2E-05 32.2 2.3 34 29-71 7-40 (107)
10 2ifc_A Citrate synthase; oxalo 64.8 2.9 0.0001 36.2 2.1 24 24-47 30-55 (385)
11 1vgp_A 373AA long hypothetical 62.2 3.5 0.00012 35.6 2.1 24 24-47 26-50 (373)
12 1a59_A Citrate synthase; cold- 62.2 3.5 0.00012 35.6 2.1 24 24-47 28-52 (378)
13 2p2w_A Citrate synthase; trans 62.2 3.5 0.00012 35.5 2.1 24 24-47 25-49 (367)
14 1iom_A Citrate synthase; open 62.0 3.5 0.00012 35.6 2.1 24 24-47 26-50 (377)
15 1aj8_A Citrate synthase; hyper 62.0 3.6 0.00012 35.5 2.1 24 24-47 24-48 (371)
16 2ibp_A Citrate synthase; disul 60.2 4 0.00014 35.8 2.1 24 24-47 45-69 (409)
17 2c6x_A Citrate synthase 1; tri 57.9 4.5 0.00016 34.8 2.1 24 24-47 24-48 (363)
18 1vgm_A 378AA long hypothetical 57.6 4.7 0.00016 34.9 2.1 24 24-47 28-52 (378)
19 1o7x_A Citrate synthase; lyase 57.6 4.7 0.00016 34.8 2.1 24 24-47 27-51 (377)
20 1skn_P DNA-binding domain of S 57.2 8.7 0.0003 27.7 3.1 37 29-72 30-66 (92)
21 2wt7_B Transcription factor MA 55.6 3.6 0.00012 29.4 0.9 31 33-72 1-31 (90)
22 3o8j_A 2-methylcitrate synthas 55.5 4.8 0.00016 35.3 1.8 24 24-47 56-80 (404)
23 3hwk_A Methylcitrate synthase; 54.0 5.8 0.0002 34.9 2.1 24 24-47 72-96 (414)
24 3tqg_A 2-methylcitrate synthas 54.0 5.3 0.00018 34.7 1.8 25 23-47 29-54 (375)
25 2kz5_A Transcription factor NF 53.1 10 0.00035 27.2 2.9 37 30-73 35-71 (91)
26 3msu_A Citrate synthase; helix 50.3 6.4 0.00022 34.8 1.8 24 24-47 74-98 (427)
27 2h12_A Citrate synthase; acido 49.7 6.6 0.00023 34.7 1.8 24 24-47 73-97 (436)
28 3l96_A Citrate synthase; quate 49.7 6.5 0.00022 34.7 1.8 24 24-47 65-89 (426)
29 1csh_A Citrate synthase; lyase 43.2 7.3 0.00025 34.4 1.0 23 25-47 62-94 (435)
30 2lpe_A Kinase suppressor of RA 42.4 13 0.00044 28.8 2.2 19 29-47 106-124 (149)
31 2a1j_A DNA repair endonuclease 42.3 14 0.00049 23.7 2.1 25 31-55 26-51 (63)
32 1z00_B DNA repair endonuclease 41.5 13 0.00046 25.5 2.0 30 31-60 40-70 (84)
33 2lz1_A Nuclear factor erythroi 40.4 21 0.00071 25.6 2.9 37 30-73 35-71 (90)
34 1j2m_A CPI-17, 17-kDa PKC-pote 37.4 11 0.00036 27.5 0.9 14 29-42 53-66 (99)
35 1awc_A Protein (GA binding pro 35.6 35 0.0012 25.1 3.5 35 22-56 73-108 (110)
36 3v2d_5 50S ribosomal protein L 33.3 20 0.00068 23.5 1.7 23 92-114 37-59 (60)
37 3r8s_0 50S ribosomal protein L 25.2 35 0.0012 21.9 1.8 20 93-113 35-54 (56)
38 2zjr_Z 50S ribosomal protein L 22.8 30 0.001 22.6 1.1 47 49-113 12-58 (60)
39 1zav_U 50S ribosomal protein L 22.2 54 0.0019 18.6 2.0 18 32-49 7-24 (30)
40 2f3j_A RNA and export factor b 22.2 25 0.00087 26.2 0.8 21 25-45 8-28 (177)
41 2jo8_A Serine/threonine-protei 22.0 66 0.0022 20.7 2.6 18 30-47 2-19 (51)
42 2wuj_A Septum site-determining 21.1 36 0.0012 21.7 1.2 28 20-49 11-38 (57)
43 2kso_A Ephrin type-A receptor 20.5 35 0.0012 22.9 1.1 26 21-46 31-57 (82)
44 3k1r_B Usher syndrome type-1G 20.2 53 0.0018 21.7 1.9 22 25-46 21-42 (74)
No 1
>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s
Probab=100.00 E-value=1.3e-76 Score=466.96 Aligned_cols=154 Identities=87% Similarity=1.339 Sum_probs=89.4
Q ss_pred CCCCcccHHHHHHhcCCccccceeeeeecCChhHHhcCCHHHHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhhcCCCC
Q 031653 1 MADGDADVAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPG 80 (155)
Q Consensus 1 ~~~~~~~~~~~~~~~~~KKrtf~kFtYRG~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~ 80 (155)
|||.+++.+.+| |+++|||||++|||||+|||||++||+|||++|+||||||+++|||+++|..||++||+++++++++
T Consensus 1 ~~~~~~~~~~~~-~~~~kkrtf~kFtYrG~~ld~Ll~ms~eel~~L~~aR~RR~l~RGl~~k~~~Llkklrkak~~~~~~ 79 (154)
T 3iz6_R 1 MADVEVETEVAA-GAQPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAG 79 (154)
T ss_dssp ----------------------------------------------------------CCCCSCCCCSSCCSCCCSHHHH
T ss_pred CCcccchhHHHH-HhhhcccceeeEEEecCcHHHHHhCCHHHHHHHccHHHhhhhhcCCCHHHHHHHHHHHHhhhccCcc
Confidence 788888744334 4788999999999999999999999999999999999999999999999999999999999888888
Q ss_pred CCCCceEeccCCceecccccccEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCCCcccCC
Q 031653 81 EKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155 (155)
Q Consensus 81 ~kp~~ikt~~R~~~IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~H~~pGigAT~sS~fvplK 155 (155)
++|++|+||+|+|+|+|+|||++|+|||||+|++|+|+|||||||||||++||+++.||+|||||||||+|||||
T Consensus 80 ~k~~~IkT~sR~s~IlPemVG~ti~VyNGK~f~~V~It~eMVGhkLGEFa~Trk~~~HgkpGiGAT~SS~FiPlK 154 (154)
T 3iz6_R 80 EKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154 (154)
T ss_dssp HTHHHHHTCSCSCCCCCCCCCCCCGGGTTCCCEEESSSSEEECCCCSSCCSSCGGGTTSSHHHHHTTCC------
T ss_pred cCCceeeecccCCEECHHHCCcEEEEEcCcceeeEEeccCccceeeeeeeeeeccCcCCCCCCCcccccccccCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*
Probab=100.00 E-value=2e-70 Score=427.21 Aligned_cols=138 Identities=67% Similarity=1.126 Sum_probs=123.1
Q ss_pred cCCccccceeeeeecCChhHHhcCCHHHHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEeccCCce
Q 031653 15 GLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMI 94 (155)
Q Consensus 15 ~~~KKrtf~kFtYRG~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~ikt~~R~~~ 94 (155)
+++|||||++|||||+|||||++||+|||++|+||||||+++|||+++|..||++||+|+++++++++|++|+||+|+|+
T Consensus 5 ~~~kkrtf~kFtyrG~~ld~Ll~ms~e~l~~L~~aR~RR~l~RGl~~k~~~Ll~klrkak~~~~~~~k~~~ikT~sR~s~ 84 (142)
T 3u5c_P 5 VNAKKRVFKTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMI 84 (142)
T ss_dssp ---CCCCCCCCBSSSCBHHHHHTTCHHHHHHHSCHHHHHHHHSCCSSCSHHHHHHHHHHHHHSCSSSCCCCEEECCTTCB
T ss_pred ccccccceeeEEEccccHHHHHcCCHHHHHHHhhHHHhhhhccCCCHHHHHHHHHHHHHhhhcCcccCCcceEeeccCCE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCCCcccCC
Q 031653 95 IVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155 (155)
Q Consensus 95 IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~H~~pGigAT~sS~fvplK 155 (155)
|+|+|||++|+|||||+|++|+|+||||||||||||+||+++.||+||| |||+|||||
T Consensus 85 IlP~mVG~ti~VyNGK~f~~V~It~eMVGhkLGEFa~Trk~~~Hg~~gi---~SS~fiplK 142 (142)
T 3u5c_P 85 IVPEMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSITYTPVRHGRAGA---TTSRFIPLK 142 (142)
T ss_dssp CCGGGTTCEEEEESSSSEEEEECCGGGTTSBGGGGSCCSCCCCCSCC--------------
T ss_pred eChhHCCCEEEEEcCCeeEEEecccCccceeeeeeeeEecccccCCCCc---cccccccCC
Confidence 9999999999999999999999999999999999999999999999999 999999997
No 3
>3j20_T 30S ribosomal protein S19P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.8e-66 Score=400.96 Aligned_cols=130 Identities=53% Similarity=0.879 Sum_probs=107.6
Q ss_pred ceeeeeecCChhHHhcCCHHHHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEeccCCceecccccc
Q 031653 22 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIG 101 (155)
Q Consensus 22 f~kFtYRG~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~ikt~~R~~~IlP~mvG 101 (155)
-++|||||+|||||++||+|||++|+||||||++.||++..+.+||++++++++++ +|++|+||+|+|+|+|+|||
T Consensus 3 ~~kftyrG~~ld~L~~ms~~~l~~L~~ar~rRslkkG~~~~~~~LlkKi~k~~~~~----~~~~ikT~sR~s~IlP~mVG 78 (132)
T 3j20_T 3 RKEFRYRGYTLEQLMNMSLEELARLFPARQRRSLKRGLTPEQKKLLRKIRLAKKGK----YKKPIRTHCRDMIILPEMVG 78 (132)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHHHSCHHHHHHHHHCCCHHHHHHHHHHHHHSSSS----CCCCEEECCCSCBCCGGGTT
T ss_pred ccEEEEcCCcHHHHHcCCHHHHHHHhhHHHHHHhhcCCchhhHHHHHHHHHHHhcc----CCcceEecccCCEeChHHCC
Confidence 36899999999999999999999999999999999999988999999999998643 57899999999999999999
Q ss_pred cEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCCCcccCC
Q 031653 102 SIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155 (155)
Q Consensus 102 ~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~H~~pGigAT~sS~fvplK 155 (155)
++|+|||||+|++|+|+||||||||||||+||+++.||+|||||||||+|||||
T Consensus 79 ~ti~VyNGK~f~~V~It~eMVGhkLGEFa~Trk~~~H~~pGigAT~sS~fiplK 132 (132)
T 3j20_T 79 LTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKKVEHGAPGVGATRSSMFVAVK 132 (132)
T ss_dssp CEEEEECSSSEEEEECCGGGTTSBGGGTSCSSCCCCCC----------------
T ss_pred cEEEEECCCeeeeeecccCccceeeeeeeeEeccCcCCCCCcCcccccccccCC
Confidence 999999999999999999999999999999999999999999999999999997
No 4
>2xzm_S RPS15E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_S 3j0o_S 3j0l_S 3j0p_S 3j0q_S
Probab=100.00 E-value=1.8e-64 Score=394.53 Aligned_cols=132 Identities=48% Similarity=0.936 Sum_probs=113.9
Q ss_pred ccccceeeeeecCChhHHhc---------CCHHHHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEe
Q 031653 18 KKRTFKKFSFRGVDLDALLD---------MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRT 88 (155)
Q Consensus 18 KKrtf~kFtYRG~~ld~L~~---------ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~ikt 88 (155)
|||+|++|||||+|||||++ ||+|||++|+||||||++.||+..++.+||+++++++++++++++|++|+|
T Consensus 4 ~k~~~~kftyrG~~l~~L~~~~~~~~~~~m~~~~~~~l~~ar~RRSlkKGpfv~~~~LLkKi~k~~~~~~~~~k~~vIKT 83 (144)
T 2xzm_S 4 NKKSIKKFTFRGKGLEELTALASGSNSEKLISDELAALFDAKTRRRVKRGISEKYAKFVNKVRRSKEKCPAGEKPVPVKT 83 (144)
T ss_dssp -------CCCCTTCHHHHHHHHSSTTCCSSSCHHHHHHSCHHHHHHHHHHCCSHHHHHHHHHHHHHHHSCTTTCCCCEEE
T ss_pred cccceeeeeecCCcHHHHHhhhcccccccCCHHHHHHHhchhhhhhhhCCCCcccHHHHHHHHHHhhhhhccCCCceEEE
Confidence 67899999999999999999 999999999999999999999998899999999999988888889999999
Q ss_pred ccCCceecccccccEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCC
Q 031653 89 HLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSS 149 (155)
Q Consensus 89 ~~R~~~IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~H~~pGigAT~sS 149 (155)
|+|+|+|+|+|||++|+|||||+|++|+|+||||||||||||+||+++.|++|||||||||
T Consensus 84 wsR~stIlPemVG~ti~VyNGK~fvpV~IteeMVGHKLGEFa~TRk~~~H~~pGigat~s~ 144 (144)
T 2xzm_S 84 HYRSMIVIPELVGGIVGVYNGKEFVNVEVKFDMIGKYLAEFAMTYKPTTHGKTGAAGGKGK 144 (144)
T ss_dssp CCTTCBCCGGGTTCEEEEECSSSEEEEECCGGGTTSBGGGGSCCSCCCCCCC---------
T ss_pred eccCcCcCHhHCCcEEEEecCCeeeeeeecccccceeeeceeeecccCccCCCCcCcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999997
No 5
>3bbn_S Ribosomal protein S19; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=3.7e-39 Score=235.64 Aligned_cols=85 Identities=31% Similarity=0.520 Sum_probs=77.6
Q ss_pred hhcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceecccccccEEEEecCCcccccccCCCcceeeeeeeee
Q 031653 55 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI 131 (155)
Q Consensus 55 ~~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~ikt~~R~~~IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~ 131 (155)
|.||+|++|+ +||++++++++ .+ ++++|+||+|+|+|+|+|||++|+|||||+|++|+|+||||||||||||+
T Consensus 1 M~RS~~Kgpfv~~~Llkki~~~~~---~~-~~~~ikT~sR~stIlPemVG~ti~VhNGK~fv~V~It~~MVGhkLGEFa~ 76 (92)
T 3bbn_S 1 MTRSLKKNPFVANHLLRKIEKLNK---KA-EKEIIVTWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFAP 76 (92)
T ss_dssp CCCSCSSCCCCCHHHHHHHHTTTT---TT-CCCCEEECCCSCCCCTTCTTCCEEEECSSCEEEECCCSSCSSCCSTTTSC
T ss_pred CCCccccCcccCHHHHHHHHHHHh---cC-CCcceEEEecCcccChhhcCcEEEEecCceEEEEEEeccccceEecceee
Confidence 6899999997 89999998765 23 37899999999999999999999999999999999999999999999999
Q ss_pred eeecccCCCCCC
Q 031653 132 SYKPVKHGRPGI 143 (155)
Q Consensus 132 Trk~~~H~~pGi 143 (155)
||+++.|++..-
T Consensus 77 Trk~~~H~~~~~ 88 (92)
T 3bbn_S 77 TLNFRGHAKNDN 88 (92)
T ss_dssp SSCCSSSCCCCC
T ss_pred eecccccCCCcc
Confidence 999999987543
No 6
>3a1p_B 30S ribosomal protein S19; RIMM N-terminal domain, PRC-barrel domain, beta barrels, ribosome, 30S ribosomal subunit, ribosome biogenesis; 2.30A {Thermus thermophilus} PDB: 1fka_S 1gix_V* 1hnw_S* 1hnx_S* 1hnz_S* 1hr0_S 1ibk_S* 1ibl_S* 1ibm_S 1jgo_V* 1jgp_V* 1jgq_V* 1ml5_V* 1xmo_S* 1xmq_S* 1xnq_S* 1xnr_S* 1yl4_V 2b64_S* 2b9m_S* ...
Probab=100.00 E-value=3.9e-39 Score=236.01 Aligned_cols=83 Identities=35% Similarity=0.549 Sum_probs=69.5
Q ss_pred hhcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceecccccccEEEEecCCcccccccCCCcceeeeeeeee
Q 031653 55 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI 131 (155)
Q Consensus 55 ~~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~ikt~~R~~~IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~ 131 (155)
|.||+|++|+ +||++++++++. ++|++|+||+|+|+|+|+|||++|+|||||+|++|+|+||||||||||||+
T Consensus 1 M~RS~~Kgpfv~~~Llkki~~~~~~----~~~~~ikT~sR~stIlP~mVG~ti~VhNGK~fv~V~It~eMVGhkLGEFa~ 76 (93)
T 3a1p_B 1 MPRSLKKGVFVDDHLLEKVLELNAK----GEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAP 76 (93)
T ss_dssp --------CCCCHHHHHHHHHHHHH----TCCCCEEECCSSSBCCGGGTTCEEEEECSSSEEEEECCGGGTTSBGGGGCC
T ss_pred CCCccccCcccCHHHHHHHHHHHhc----CCCcceEEEecCcCcChhhcCcEEEEecCceEEEEEeccCccceeecceee
Confidence 6899999997 899999988763 247899999999999999999999999999999999999999999999999
Q ss_pred eeecccCCCC
Q 031653 132 SYKPVKHGRP 141 (155)
Q Consensus 132 Trk~~~H~~p 141 (155)
||+++.|++.
T Consensus 77 Trk~~~H~~~ 86 (93)
T 3a1p_B 77 TRTYRGHGKE 86 (93)
T ss_dssp CSCCCCTTGG
T ss_pred eecccccCcc
Confidence 9999999753
No 7
>3i1m_S 30S ribosomal protein S19; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_S* 3e1a_L 3e1c_L 1vs5_S 3i1o_S 3i1q_S 3i1s_S 3i1z_S 3i21_S 3izv_W* 3izw_W* 3kc4_S 3or9_S 3ora_S 3sfs_S* 3uoq_S* 4gaq_S* 4gas_S* 2qal_S* 1p6g_S ...
Probab=100.00 E-value=6.6e-39 Score=234.39 Aligned_cols=82 Identities=38% Similarity=0.568 Sum_probs=71.9
Q ss_pred hhcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceecccccccEEEEecCCcccccccCCCcceeeeeeeee
Q 031653 55 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI 131 (155)
Q Consensus 55 ~~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~ikt~~R~~~IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~ 131 (155)
|.||+|++|+ +||++++++++.. ++++|+||+|+|+|||+|||++|+|||||+|++|+|+||||||||||||+
T Consensus 1 M~RS~~KGpfv~~~Llkki~k~~~~~----~~~~ikT~sR~stIlP~mVG~ti~VyNGK~fv~V~It~~MVGhkLGEFa~ 76 (92)
T 3i1m_S 1 MPRSLKKGPFIDLHLLKKVEKAVESG----DKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAP 76 (92)
T ss_dssp --CCCCSSCCCCHHHHHHHHHHHHTC----CCSCCEECCTTCBCCGGGSSCCCEEECSSSEEECCCCTTCCSSBGGGSSC
T ss_pred CCcccccCcCcCHHHHHHHHHHHhcC----CCcceEEecCCCEechHHCCCEEEEEcCceEEEEEeecCeeeeEeeeeee
Confidence 7899999997 9999999987632 46789999999999999999999999999999999999999999999999
Q ss_pred eeecccCCC
Q 031653 132 SYKPVKHGR 140 (155)
Q Consensus 132 Trk~~~H~~ 140 (155)
||+++.|++
T Consensus 77 TRk~~~H~~ 85 (92)
T 3i1m_S 77 TRTYRGHAA 85 (92)
T ss_dssp CCCCC----
T ss_pred EecccccCc
Confidence 999999986
No 8
>3r8n_S 30S ribosomal protein S19; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_S 3fih_S* 3j18_S* 2wwl_S 3oar_S 3oaq_S 3ofb_S 3ofa_S 3ofp_S 3ofx_S 3ofy_S 3ofo_S 3r8o_S 4a2i_S 4gd1_S 4gd2_S 2gy9_S 2gyb_S
Probab=100.00 E-value=5.8e-37 Score=218.69 Aligned_cols=75 Identities=40% Similarity=0.597 Sum_probs=69.5
Q ss_pred cCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceecccccccEEEEecCCcccccccCCCcceeeeeeeeeee
Q 031653 57 RGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISY 133 (155)
Q Consensus 57 Rgl~k~~~---~Llkklrkak~~~~~~~kp~~ikt~~R~~~IlP~mvG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Tr 133 (155)
||+||+|+ +||++++++++. .++++|+||+|+|+|+|+|||++|+|||||+|++|+|+||||||||||||+||
T Consensus 1 RS~~Kgpfv~~~Llkki~k~~~~----~~~~~ikT~sR~stIlP~mVG~ti~VyNGk~f~~V~It~~MVGhkLGEFa~TR 76 (79)
T 3r8n_S 1 RSLKKGPFIDLHLLKKVEKAVES----GDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTR 76 (79)
T ss_dssp CCCCSCCCCCHHHHHHHGGGTTS----CCCSCEECCCTTSBCCSTTTTCCEEEECSSSEECCCCCTTCCSSBTTTTSCSS
T ss_pred CCcccCcCcCHHHHHHHHHHHhc----CCCcceEEecCCCEECHHHCCCEEEEECCCeeEEEEeccCeeceEeeeeeeEe
Confidence 79999996 999999987753 24778999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 031653 134 KP 135 (155)
Q Consensus 134 k~ 135 (155)
++
T Consensus 77 ~~ 78 (79)
T 3r8n_S 77 TY 78 (79)
T ss_dssp CC
T ss_pred ec
Confidence 86
No 9
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=75.36 E-value=1.5 Score=32.21 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=26.9
Q ss_pred cCChhHHhcCCHHHHHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 031653 29 GVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLR 71 (155)
Q Consensus 29 G~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklr 71 (155)
+++.|+|..||.+||-.+| +|+++.+...|+..|
T Consensus 7 ~~sd~~Lv~m~v~elN~~L---------~~Ls~~e~~~lK~~R 40 (107)
T 3a5t_A 7 SLTDEELVTMSVRELNQHL---------RGLSKEEIIQLKQRR 40 (107)
T ss_dssp CCCHHHHHHSCHHHHHHTT---------TTCCHHHHHHHHHHH
T ss_pred CCCHHHHhcCCHHHHHHHH---------hCCCHHHHHHHHHHH
Confidence 5789999999999997765 477777777776665
No 10
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=64.76 E-value=2.9 Score=36.24 Aligned_cols=24 Identities=17% Similarity=0.522 Sum_probs=20.6
Q ss_pred eeeeecCChhHHhc--CCHHHHHHHH
Q 031653 24 KFSFRGVDLDALLD--MSNDELVKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~--ms~eel~~L~ 47 (155)
...|||++++||.+ -++||.+-||
T Consensus 30 ~L~YRGy~i~dLa~~~~~fEeva~LL 55 (385)
T 2ifc_A 30 ILRYGGYSVEDIIASGAQDEEIQYLF 55 (385)
T ss_dssp EEEETTEEHHHHHHTTCCHHHHHHHH
T ss_pred EEEECCccHHHHHhcCCCHHHHHHHH
Confidence 48899999999998 6799987774
No 11
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=62.24 E-value=3.5 Score=35.57 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=20.5
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031653 24 KFSFRGVDLDALLD-MSNDELVKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ .++||.+-||
T Consensus 26 ~L~YRGy~i~~La~~~~fEeva~LL 50 (373)
T 1vgp_A 26 RLYYRGYSIYDLAEFSNFEEVSYLI 50 (373)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEEcCeeHHHHHccCCHHHHHHHH
Confidence 48899999999987 6799987774
No 12
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=62.16 E-value=3.5 Score=35.57 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.4
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031653 24 KFSFRGVDLDALLD-MSNDELVKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ .++||.+-||
T Consensus 28 ~L~YRGy~i~dLa~~~~fEeva~LL 52 (378)
T 1a59_A 28 SLLYRGYPVQELAAKCSFEQVAYLL 52 (378)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred eEEEcCccHHHHHhcCCHHHHHHHH
Confidence 48899999999987 6799987774
No 13
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima}
Probab=62.15 E-value=3.5 Score=35.52 Aligned_cols=24 Identities=17% Similarity=0.495 Sum_probs=20.6
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031653 24 KFSFRGVDLDALLD-MSNDELVKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ .++||.+-||
T Consensus 25 ~L~YRGy~i~dLa~~~~feeva~LL 49 (367)
T 2p2w_A 25 RLYYRGIPVEELAEKSTFEETAYFL 49 (367)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEECCeeHHHHHcCCCHHHHHHHH
Confidence 48899999999987 6899988775
No 14
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=62.04 E-value=3.5 Score=35.63 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=20.3
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031653 24 KFSFRGVDLDALLD-MSNDELVKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ .++||.+-||
T Consensus 26 ~L~YRGy~i~dLa~~~~fEeva~LL 50 (377)
T 1iom_A 26 KLYYYGIPIQELAEKSSFEETTFLL 50 (377)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEEcCeeHHHHHccCCHHHHHHHH
Confidence 48899999999987 6789987774
No 15
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=61.95 E-value=3.6 Score=35.53 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=20.5
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031653 24 KFSFRGVDLDALLD-MSNDELVKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ .++||.+-||
T Consensus 24 ~L~YRGy~i~~La~~~~fEeva~LL 48 (371)
T 1aj8_A 24 KLYYRGYSVEELAELSTFEEVVYLL 48 (371)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEEcCccHHHHHccCCHHHHHHHH
Confidence 47899999999987 6799988774
No 16
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum}
Probab=60.22 E-value=4 Score=35.78 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=20.2
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031653 24 KFSFRGVDLDALLD-MSNDELVKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ .++||.+-||
T Consensus 45 ~L~YRGy~i~dLa~~~~fEeva~LL 69 (409)
T 2ibp_A 45 ILWYRGYRIEELARLSTYEEVSYLI 69 (409)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEEcCccHHHHHccCCHHHHHHHH
Confidence 47899999999988 5788877764
No 17
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis}
Probab=57.91 E-value=4.5 Score=34.82 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=20.1
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031653 24 KFSFRGVDLDALLD-MSNDELVKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ -++||.+-||
T Consensus 24 ~L~YRGy~i~dLa~~~~fEeva~LL 48 (363)
T 2c6x_A 24 RLIYRGHHAKDIALNHSFEEAAYLI 48 (363)
T ss_dssp EEEETTEEHHHHHHHSCHHHHHHHH
T ss_pred EEEEcCccHHHHHccCCHHHHHHHH
Confidence 47899999999988 5788877764
No 18
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=57.63 E-value=4.7 Score=34.87 Aligned_cols=24 Identities=33% Similarity=0.724 Sum_probs=20.2
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031653 24 KFSFRGVDLDALLD-MSNDELVKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ -++||.+-||
T Consensus 28 ~L~YRGy~i~dLa~~~~fEeva~LL 52 (378)
T 1vgm_A 28 ILRYRGYDINDLVNYASYEELIHLM 52 (378)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred eEEEcCeeHHHHHhcCCHHHHHHHH
Confidence 48899999999988 5789987774
No 19
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1
Probab=57.58 E-value=4.7 Score=34.85 Aligned_cols=24 Identities=25% Similarity=0.546 Sum_probs=20.5
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031653 24 KFSFRGVDLDALLD-MSNDELVKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ -++||.+-||
T Consensus 27 ~L~YRGy~i~dLa~~~~feeva~LL 51 (377)
T 1o7x_A 27 ILRYRGYNIEDLVNYGSYEETIYLM 51 (377)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEECCccHHHHHcCCCHHHHHHHH
Confidence 48899999999988 5799988775
No 20
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=57.15 E-value=8.7 Score=27.68 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=27.2
Q ss_pred cCChhHHhcCCHHHHHHHHHHHHHhhhhcCCCCCcchHHHHHHH
Q 031653 29 GVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRK 72 (155)
Q Consensus 29 G~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrk 72 (155)
+++.||+.+||.+||-+++. ..+|+..+..+++.+|.
T Consensus 30 Pfs~~eIv~lpv~efn~lLk-------~~~Ls~~Ql~~ir~~RR 66 (92)
T 1skn_P 30 PVSAFQISEMSLSELQQVLK-------NESLSEYQRQLIRKIRR 66 (92)
T ss_dssp SSCHHHHHHSCHHHHHHHHH-------HSCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHCcHHHHHHHHH-------hCCCCHHHHHHHHHHHH
Confidence 46899999999999977664 34666666666666653
No 21
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=55.57 E-value=3.6 Score=29.36 Aligned_cols=31 Identities=32% Similarity=0.544 Sum_probs=24.1
Q ss_pred hHHhcCCHHHHHHHHHHHHHhhhhcCCCCCcchHHHHHHH
Q 031653 33 DALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRK 72 (155)
Q Consensus 33 d~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrk 72 (155)
|+|..||..||-.++ +|+++.+...|+..|-
T Consensus 1 deLv~msVreLN~~L---------~gls~eev~~lKq~RR 31 (90)
T 2wt7_B 1 DQLVSMSVRELNRHL---------RGFTKDEVIRLKQKRR 31 (90)
T ss_dssp CHHHHSCHHHHHTTC---------TTCCHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHH---------cCCCHHHHHHHHHHHH
Confidence 689999999985554 5888888888877663
No 22
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=55.50 E-value=4.8 Score=35.34 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=20.2
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031653 24 KFSFRGVDLDALLD-MSNDELVKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ -++||.+-||
T Consensus 56 ~L~YRGy~I~dLa~~~~fEevayLL 80 (404)
T 3o8j_A 56 DLHYRGYDILDLAEHCEFEEVAHLL 80 (404)
T ss_dssp CEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEECCeEHHHHHhcCCHHHHHHHH
Confidence 58999999999976 5789987765
No 23
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=53.99 E-value=5.8 Score=34.93 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=20.2
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031653 24 KFSFRGVDLDALLD-MSNDELVKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ -++||.+-||
T Consensus 72 ~L~YRGy~I~dLa~~~~fEevayLL 96 (414)
T 3hwk_A 72 SLTYRGYPVQDLAARCSFEQVAFLL 96 (414)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEECCeEHHHHHhcCCHHHHHHHH
Confidence 58999999999975 6789987765
No 24
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=53.95 E-value=5.3 Score=34.65 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=20.9
Q ss_pred eeeeeecCChhHHhc-CCHHHHHHHH
Q 031653 23 KKFSFRGVDLDALLD-MSNDELVKLF 47 (155)
Q Consensus 23 ~kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
....|||++++||.+ -++||.+-||
T Consensus 29 g~L~YRGy~I~dLa~~~~feev~yLL 54 (375)
T 3tqg_A 29 HGLTYRGYRIEDLAANATFEEVAYLL 54 (375)
T ss_dssp CCEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred CEEEECCeeHHHHHhcCCHHHHHHHH
Confidence 358999999999975 6789988776
No 25
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=53.07 E-value=10 Score=27.22 Aligned_cols=37 Identities=19% Similarity=0.481 Sum_probs=29.9
Q ss_pred CChhHHhcCCHHHHHHHHHHHHHhhhhcCCCCCcchHHHHHHHh
Q 031653 30 VDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKA 73 (155)
Q Consensus 30 ~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrka 73 (155)
++.||+.+||.+||-+|+. ..+|+..|..|++.+|.-
T Consensus 35 fs~~~Iv~lpv~efn~ll~-------~~~Ls~~Ql~lIrdiRRR 71 (91)
T 2kz5_A 35 FPTDKIVNLPVDDFNELLA-------RYPLTESQLALVRDIRRR 71 (91)
T ss_dssp SCHHHHHHSCHHHHHHHHH-------HSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHCcHHHHHHHHH-------HcCCCHHHHHHHHHHHHH
Confidence 5889999999999977664 457888888999888743
No 26
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis}
Probab=50.34 E-value=6.4 Score=34.78 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=19.9
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031653 24 KFSFRGVDLDALLD-MSNDELVKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ -++||.+-||
T Consensus 74 ~L~YRGy~I~dLa~~~~feevayLL 98 (427)
T 3msu_A 74 VLLHRGYPIEEWTQKSNYRTLCYAL 98 (427)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEECCeEHHHHhccCCHHHHHHHH
Confidence 47899999999976 5788877665
No 27
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti}
Probab=49.74 E-value=6.6 Score=34.67 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.0
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031653 24 KFSFRGVDLDALLD-MSNDELVKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ -+++|.+-||
T Consensus 73 ~L~YRGy~I~dLa~~~~feEvayLL 97 (436)
T 2h12_A 73 VLLHRGYPIAQLAENASYEEVIYLL 97 (436)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEECCeEHHHHHhcCCHHHHHHHH
Confidence 36899999999988 5789977764
No 28
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A
Probab=49.72 E-value=6.5 Score=34.69 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=19.9
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031653 24 KFSFRGVDLDALLD-MSNDELVKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ -++||.+-||
T Consensus 65 ~L~YRGy~I~dLa~~~~feevayLL 89 (426)
T 3l96_A 65 ILLHRGFPIDQLATDSNYLEVCYIL 89 (426)
T ss_dssp EEEETTEEHHHHHHHSCHHHHHHHH
T ss_pred EEEECCeEHHHHHhcCCHHHHHHHH
Confidence 47999999999976 5788877665
No 29
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Probab=43.16 E-value=7.3 Score=34.35 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=19.0
Q ss_pred eeeecCChhHHhcC----------CHHHHHHHH
Q 031653 25 FSFRGVDLDALLDM----------SNDELVKLF 47 (155)
Q Consensus 25 FtYRG~~ld~L~~m----------s~eel~~L~ 47 (155)
..|||++++||.+- ++||++-||
T Consensus 62 l~YRGy~I~dLa~~~~~~~~~~~~~feev~yLL 94 (435)
T 1csh_A 62 IRFRGFSIPECQKLLPKAGGGEEPLPEGLFWLL 94 (435)
T ss_dssp EEETTEEHHHHHHHSCBCTTCCSBCHHHHHHHH
T ss_pred eeECCccHHHHHhhCcccccCCcCCHHHHHHHH
Confidence 58999999999985 388877663
No 30
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=42.41 E-value=13 Score=28.84 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=17.1
Q ss_pred cCChhHHhcCCHHHHHHHH
Q 031653 29 GVDLDALLDMSNDELVKLF 47 (155)
Q Consensus 29 G~~ld~L~~ms~eel~~L~ 47 (155)
..+||+|++||-+|+-++|
T Consensus 106 ~~TLe~LLemsd~evr~~L 124 (149)
T 2lpe_A 106 ELTLDALLEMDEAKAKEML 124 (149)
T ss_dssp TCSHHHHTTSCHHHHHHHH
T ss_pred hccHHHHHhcCHHHHHHHH
Confidence 5699999999999998877
No 31
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=42.33 E-value=14 Score=23.68 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=20.3
Q ss_pred ChhHHhcCCHHHHHHHHHHHH-Hhhh
Q 031653 31 DLDALLDMSNDELVKLFSARA-RRRF 55 (155)
Q Consensus 31 ~ld~L~~ms~eel~~L~~ar~-RR~~ 55 (155)
+++++.++|.|||.++++... -+.+
T Consensus 26 s~~~i~~As~eeL~~vig~~~~A~~I 51 (63)
T 2a1j_A 26 NIAELAALSQDELTSILGNAANAKQL 51 (63)
T ss_dssp SHHHHHTCCHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHCCHHHHHHHcCchHHHHHH
Confidence 899999999999999977554 3443
No 32
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=41.52 E-value=13 Score=25.51 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=24.6
Q ss_pred ChhHHhcCCHHHHHHHHHHHH-HhhhhcCCC
Q 031653 31 DLDALLDMSNDELVKLFSARA-RRRFQRGLK 60 (155)
Q Consensus 31 ~ld~L~~ms~eel~~L~~ar~-RR~~~Rgl~ 60 (155)
++++|.++|.|||.++++... -+.+..-|.
T Consensus 40 Sl~~i~~AS~eEL~~vig~~~~A~~I~~~l~ 70 (84)
T 1z00_B 40 NIAELAALSQDELTSILGNAANAKQLYDFIH 70 (84)
T ss_dssp CHHHHHHSCHHHHHHHHSCHHHHHHHHHHHT
T ss_pred CHHHHHHCCHHHHHHHhCchHHHHHHHHHHH
Confidence 999999999999999998776 666655443
No 33
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=40.37 E-value=21 Score=25.57 Aligned_cols=37 Identities=14% Similarity=0.444 Sum_probs=30.3
Q ss_pred CChhHHhcCCHHHHHHHHHHHHHhhhhcCCCCCcchHHHHHHHh
Q 031653 30 VDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKA 73 (155)
Q Consensus 30 ~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrka 73 (155)
++.||+.+||.+||-+|+. ..+|+..|..|+..+|..
T Consensus 35 FsvdqIvnLpv~eFn~lL~-------~~~Lt~~Ql~lIrdiRRR 71 (90)
T 2lz1_A 35 FPVEKIINLPVVDFNEMMS-------KEQFNEAQLALIRDIRRR 71 (90)
T ss_dssp SCHHHHHHSCHHHHHHHHH-------HSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHCCHHHHHHHHH-------HcCCCHHHHHHHHHHHHh
Confidence 4889999999999977664 357888888999988854
No 34
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=37.42 E-value=11 Score=27.53 Aligned_cols=14 Identities=36% Similarity=0.790 Sum_probs=12.0
Q ss_pred cCChhHHhcCCHHH
Q 031653 29 GVDLDALLDMSNDE 42 (155)
Q Consensus 29 G~~ld~L~~ms~ee 42 (155)
-+|+|+|++|+.|+
T Consensus 53 eIDiDeLLDl~sde 66 (99)
T 1j2m_A 53 EVNIDELLELESEE 66 (99)
T ss_dssp SCCSHHHHCCTTTT
T ss_pred ccCHHHHhcCCcHH
Confidence 57999999997766
No 35
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=35.56 E-value=35 Score=25.08 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=28.5
Q ss_pred ceeeeee-cCChhHHhcCCHHHHHHHHHHHHHhhhh
Q 031653 22 FKKFSFR-GVDLDALLDMSNDELVKLFSARARRRFQ 56 (155)
Q Consensus 22 f~kFtYR-G~~ld~L~~ms~eel~~L~~ar~RR~~~ 56 (155)
-+.|.|+ +-++.+|..++.+|+-.++.....++..
T Consensus 73 GkrlvY~F~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 108 (110)
T 1awc_A 73 GKRFVYKFVCDLKTLIGYSAAELNRLVIECEQKKLA 108 (110)
T ss_dssp TSTTEEEECSCHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCeeEEecCCCHHHHhCCCHHHHHHHHHHHhhhhhc
Confidence 4568898 6899999999999999988876665544
No 36
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=33.29 E-value=20 Score=23.48 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=18.0
Q ss_pred CceecccccccEEEEecCCcccc
Q 031653 92 NMIIVPEMIGSIIGVYNGKTFNQ 114 (155)
Q Consensus 92 ~~~IlP~mvG~~v~VyNGK~f~~ 114 (155)
....+|-.|-..-|.|+|++-+.
T Consensus 37 Ge~~~~H~vc~~CG~Y~gr~V~~ 59 (60)
T 3v2d_5 37 KAMKPPHTVCPECGYYAGRKVLE 59 (60)
T ss_dssp CCEECTTSCCTTTCEETTEECCC
T ss_pred CCeecceEEcCCCCcCCCEEeec
Confidence 34688888877778999998664
No 37
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=25.16 E-value=35 Score=21.87 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=15.4
Q ss_pred ceecccccccEEEEecCCccc
Q 031653 93 MIIVPEMIGSIIGVYNGKTFN 113 (155)
Q Consensus 93 ~~IlP~mvG~~v~VyNGK~f~ 113 (155)
...+|-.|-.. |-|+|++-+
T Consensus 35 e~~l~H~vc~~-G~Y~gr~V~ 54 (56)
T 3r8s_0 35 EKHLRHHITAD-GYYRGRKVI 54 (56)
T ss_dssp CEEETTBCCTT-SEETTEECS
T ss_pred CeecccEECCC-CeECCEEee
Confidence 35778888777 899998765
No 38
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=22.78 E-value=30 Score=22.57 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=30.1
Q ss_pred HHHHhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEeccCCceecccccccEEEEecCCccc
Q 031653 49 ARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 113 (155)
Q Consensus 49 ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~ikt~~R~~~IlP~mvG~~v~VyNGK~f~ 113 (155)
|++||+++|+-|+- ..|..+.--.=....+|-.|-..-|-|+|++-+
T Consensus 12 Sksrr~~RRsh~kl------------------~~p~l~~c~~cG~~~~pH~vc~~CG~Y~gr~v~ 58 (60)
T 2zjr_Z 12 SKSKRDMRRSHHAL------------------TAPNLTECPQCHGKKLSHHICPNCGYYDGRQVL 58 (60)
T ss_dssp CTTHHHHHTTTCCC------------------CCCCCEECTTTCCEECTTBCCTTTCBSSSBCSC
T ss_pred ChHHhhhhcccccc------------------cCCCceECCCCCCEeCCceEcCCCCcCCCEEee
Confidence 45777888876631 023334433333457888888888899999865
No 39
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=22.24 E-value=54 Score=18.65 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=14.5
Q ss_pred hhHHhcCCHHHHHHHHHH
Q 031653 32 LDALLDMSNDELVKLFSA 49 (155)
Q Consensus 32 ld~L~~ms~eel~~L~~a 49 (155)
+|+|.+|+.-|+.+|..+
T Consensus 7 ie~i~~lTvlEl~eLvk~ 24 (30)
T 1zav_U 7 IEAIEKLTVSELAELVKK 24 (30)
T ss_dssp HHHHHHSBHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHH
Confidence 578889999888888754
No 40
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=22.23 E-value=25 Score=26.22 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=12.3
Q ss_pred eeeecCChhHHhcCCHHHHHH
Q 031653 25 FSFRGVDLDALLDMSNDELVK 45 (155)
Q Consensus 25 FtYRG~~ld~L~~ms~eel~~ 45 (155)
+.|-+-+..+.+|||+||+++
T Consensus 8 ~~~~~~~m~~~ld~sLDdii~ 28 (177)
T 2f3j_A 8 QQMGRDPMADKMDMSLDDIIK 28 (177)
T ss_dssp -------CCCSSSCCHHHHHH
T ss_pred eeccccchhhhhccCHHHHHh
Confidence 455555667889999999985
No 41
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=21.98 E-value=66 Score=20.66 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=14.9
Q ss_pred CChhHHhcCCHHHHHHHH
Q 031653 30 VDLDALLDMSNDELVKLF 47 (155)
Q Consensus 30 ~~ld~L~~ms~eel~~L~ 47 (155)
-|+|-|..+|++||.+-+
T Consensus 2 gdf~fLk~ls~eEL~~rl 19 (51)
T 2jo8_A 2 SDYEFLKSWTVEDLQKRL 19 (51)
T ss_dssp CCCGGGGGSCHHHHHHHH
T ss_pred CccHHHHhCCHHHHHHHH
Confidence 388999999999987655
No 42
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=21.05 E-value=36 Score=21.66 Aligned_cols=28 Identities=36% Similarity=0.554 Sum_probs=19.4
Q ss_pred ccceeeeeecCChhHHhcCCHHHHHHHHHH
Q 031653 20 RTFKKFSFRGVDLDALLDMSNDELVKLFSA 49 (155)
Q Consensus 20 rtf~kFtYRG~~ld~L~~ms~eel~~L~~a 49 (155)
+.|++ .+|||+.+|--+. +|++++-+-+
T Consensus 11 k~F~~-~~rGY~~~EVD~F-Ld~v~~~~~~ 38 (57)
T 2wuj_A 11 KTFTK-SFRGYDEDEVNEF-LAQVRKDYEI 38 (57)
T ss_dssp CCCCE-ETTEEEHHHHHHH-HHHHHHHHHH
T ss_pred CcCCC-CCCCcCHHHHHHH-HHHHHHHHHH
Confidence 46765 6899998887766 6666555543
No 43
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=20.46 E-value=35 Score=22.91 Aligned_cols=26 Identities=19% Similarity=0.502 Sum_probs=20.9
Q ss_pred cceeeeeecCC-hhHHhcCCHHHHHHH
Q 031653 21 TFKKFSFRGVD-LDALLDMSNDELVKL 46 (155)
Q Consensus 21 tf~kFtYRG~~-ld~L~~ms~eel~~L 46 (155)
....|.=-|++ ++.|..|+.++|.+|
T Consensus 31 Y~~~F~~~gid~~~~L~~lt~~DL~~l 57 (82)
T 2kso_A 31 YTEHFMAAGYTAIEKVVQMTNDDIKRI 57 (82)
T ss_dssp HHHHHHHTTCCSHHHHTTCCHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHhCCHHHHHHC
Confidence 34457777888 999999999998665
No 44
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=20.18 E-value=53 Score=21.67 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=18.0
Q ss_pred eeeecCChhHHhcCCHHHHHHH
Q 031653 25 FSFRGVDLDALLDMSNDELVKL 46 (155)
Q Consensus 25 FtYRG~~ld~L~~ms~eel~~L 46 (155)
|.=-|+|+|.|..|+.++|.+|
T Consensus 21 F~~~~id~e~l~~lt~~DL~~l 42 (74)
T 3k1r_B 21 LRQEKIDLEALMLCSDLDLRSI 42 (74)
T ss_dssp HHHTTCCHHHHTTCCHHHHHHT
T ss_pred HHHcCcCHHHHhHCCHHHHHHc
Confidence 4446789999999999998655
Done!