RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 031653
(155 letters)
>d2gy9s1 d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherichia coli
[TaxId: 562]}
Length = 79
Score = 92.5 bits (230), Expect = 4e-26
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 57 RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 116
R LK+ P + L+K ++ G+K P+RT R I P MIG I V+NG+ V
Sbjct: 1 RSLKKGPFIDLHLLKKVEKAVESGDKK-PLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVF 59
Query: 117 IKPEMIGHYLAEFSI 131
+ EM+GH L EF+
Sbjct: 60 VTDEMVGHKLGEFAP 74
>d2uubs1 d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus
thermophilus [TaxId: 274]}
Length = 80
Score = 89.0 bits (221), Expect = 9e-25
Identities = 30/75 (40%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 57 RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 116
R LK+ L K GEK ++T R IVPEM+G I VYNGK V
Sbjct: 2 RSLKKGVFVDDHLLEKVLELNAKGEKR-LIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVY 60
Query: 117 IKPEMIGHYLAEFSI 131
I M+GH L EF+
Sbjct: 61 ITENMVGHKLGEFAP 75
>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase
{Escherichia coli [TaxId: 562]}
Length = 120
Score = 26.9 bits (58), Expect = 0.75
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 30 VDLDALLDMSNDELVKLFSARARRRFQRGLKRKPM 64
V + +L S++ ++ AR RF +P
Sbjct: 6 VKVTDVLLASHENTAQIIDARPAARF-NAEVDEPR 39
>d1j2na_ a.165.1.1 (A:) Myosin phosphatase inhibitor 17kDa
protein, CPI-17 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 99
Score = 25.8 bits (57), Expect = 1.1
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 17/53 (32%)
Query: 30 VDLDALLDMSNDELVKLFSARARRRFQRGLKR--KP--------MALIKKLRK 72
V++D LL++ ++E R+ Q LK P + ++ L K
Sbjct: 54 VNIDELLELESEE-------ERSRKIQGLLKSCTNPTENFVQELLVKLRGLHK 99
>d3ecga1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 2
(HIV-2) protease {Human immunodeficiency virus type 2
[TaxId: 11709]}
Length = 99
Score = 25.6 bits (57), Expect = 1.2
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 97 PEMIGSIIGVYNGKTFNQVEIKPEMIGH 124
P+++G I G N K + VEI E++
Sbjct: 44 PKIVGGIGGFINTKEYKNVEI--EVLNK 69
>d1ta3a_ c.1.8.5 (A:) Xylanase inhibitor protein I, XIP-I {Wheat
(Triticum aestivum) [TaxId: 4565]}
Length = 274
Score = 26.6 bits (58), Expect = 1.3
Identities = 10/45 (22%), Positives = 13/45 (28%)
Query: 18 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRK 62
R F GVDL D L A+ + G +
Sbjct: 111 VPRPFGDAWLDGVDLFLEHGTPADRYDVLALELAKHNIRGGPGKP 155
>d1hvca_ b.50.1.1 (A:) Human immunodeficiency virus type 1 protease
{Human immunodeficiency virus type 1 [TaxId: 11676]}
Length = 203
Score = 26.1 bits (58), Expect = 1.5
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 97 PEMIGSIIGVYNGKTFNQVEIKPEMIGH 124
P+MIG I G + ++Q+ I E+ GH
Sbjct: 148 PKMIGGIGGFIKVRQYDQILI--EICGH 173
Score = 24.5 bits (54), Expect = 4.9
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 97 PEMIGSIIGVYNGKTFNQVEIKPEMIGH 124
P+MIG I G + ++Q+ I E+ GH
Sbjct: 44 PKMIGGIGGFIKVRQYDQILI--EICGH 69
>d1dxha1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 150
Score = 25.2 bits (54), Expect = 3.1
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 25 FSFRGVDLDALLDMSNDELVKLF-------SARARRRFQRGLKRKPMALI 67
F+ +L +L+ S EL L A+ Q+ LKRK +ALI
Sbjct: 2 FNMHNRNLLSLMHHSTRELRYLLDLSRDLKRAKYTGTEQQHLKRKNIALI 51
>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1
protease {Human immunodeficiency virus type 1 [TaxId:
11676]}
Length = 99
Score = 24.4 bits (54), Expect = 4.1
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 97 PEMIGSIIGVYNGKTFNQVEIKPEMIGH 124
P+MIG I G + ++Q+ I E+ GH
Sbjct: 44 PKMIGGIGGFIKVRQYDQIII--EIAGH 69
>d2o70a1 a.288.1.1 (A:2-166) OHCU decarboxylase, UraD {Zebrafish
(Brachydanio rerio) [TaxId: 7955]}
Length = 165
Score = 24.9 bits (54), Expect = 4.2
Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 31 DLDALLDMSNDELVKLF-------SARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKP 83
D++ + ++ ++ VKLF + + + + ++ + P K
Sbjct: 1 DINVVNALAYEDFVKLFGNVVEKCPLISAAIWSYRPFKDLADIEARISEFIHSLPDSGKE 60
Query: 84 EPVRTH 89
+R H
Sbjct: 61 GILRCH 66
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter
vinelandii [TaxId: 354]}
Length = 233
Score = 24.7 bits (53), Expect = 4.9
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 10/71 (14%)
Query: 1 MADGDADVAVAAAAGLPKK----------RTFKKFSFRGVDLDALLDMSNDELVKLFSAR 50
+ D D V A A LP++ R + + L+ L M+ D + +
Sbjct: 75 IRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYV 134
Query: 51 ARRRFQRGLKR 61
+R L R
Sbjct: 135 VQRIPPGRLFR 145
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 24.2 bits (51), Expect = 8.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 65 ALIKKLRKAKREAPPGEKPEPV 86
AL + L R PP E P+PV
Sbjct: 158 ALKEALHALVRSTPPPEMPKPV 179
>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella
flexneri [TaxId: 623]}
Length = 250
Score = 23.8 bits (51), Expect = 9.5
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 8 VAVAAAAGLPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRR--FQRGLKRKPMA 65
V + +K K R D+ D L++ A +R +R P+A
Sbjct: 168 VYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLATKRVVVKRPDYAPPLA 227
Query: 66 LIK 68
+
Sbjct: 228 NVA 230
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.398
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 607,753
Number of extensions: 29531
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 19
Length of query: 155
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,336,656
Effective search space: 102922512
Effective search space used: 102922512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.6 bits)