Query 031654
Match_columns 155
No_of_seqs 212 out of 1168
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 03:32:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0335 ATP-dependent RNA heli 100.0 8.2E-36 1.8E-40 245.5 6.4 148 5-154 48-247 (482)
2 KOG0331 ATP-dependent RNA heli 100.0 1.8E-34 4E-39 240.4 8.7 120 33-154 93-259 (519)
3 KOG0330 ATP-dependent RNA heli 100.0 1.8E-34 3.9E-39 231.0 6.8 124 28-153 58-223 (476)
4 PTZ00110 helicase; Provisional 100.0 4.5E-33 9.7E-38 237.2 11.5 132 21-154 120-297 (545)
5 COG0513 SrmB Superfamily II DN 100.0 6.4E-33 1.4E-37 234.7 11.8 122 31-154 29-194 (513)
6 PLN00206 DEAD-box ATP-dependen 100.0 1.8E-32 3.9E-37 232.3 11.9 136 16-153 106-289 (518)
7 KOG0336 ATP-dependent RNA heli 100.0 2.1E-33 4.5E-38 226.7 4.3 129 24-154 212-387 (629)
8 KOG0333 U5 snRNP-like RNA heli 100.0 3.2E-32 7E-37 224.6 8.0 139 14-154 228-416 (673)
9 KOG0348 ATP-dependent RNA heli 100.0 6.1E-32 1.3E-36 223.4 9.4 124 29-154 134-307 (708)
10 KOG0338 ATP-dependent RNA heli 100.0 2.5E-32 5.4E-37 224.8 5.2 123 30-154 180-347 (691)
11 KOG0345 ATP-dependent RNA heli 100.0 2.7E-31 5.8E-36 216.8 10.1 121 32-154 5-177 (567)
12 KOG0341 DEAD-box protein abstr 100.0 5.2E-32 1.1E-36 217.5 3.1 139 14-154 153-346 (610)
13 PRK04837 ATP-dependent RNA hel 100.0 1.6E-30 3.4E-35 215.3 11.7 121 31-153 8-176 (423)
14 KOG0346 RNA helicase [RNA proc 100.0 4.1E-30 8.8E-35 208.7 8.5 122 31-154 19-190 (569)
15 KOG0334 RNA helicase [RNA proc 100.0 6.5E-30 1.4E-34 223.4 9.1 134 19-154 353-535 (997)
16 KOG0339 ATP-dependent RNA heli 100.0 3.2E-30 6.9E-35 212.4 6.5 141 12-154 204-390 (731)
17 PRK11776 ATP-dependent RNA hel 100.0 3E-29 6.5E-34 209.7 11.3 121 31-153 4-166 (460)
18 KOG0343 RNA Helicase [RNA proc 100.0 6.6E-30 1.4E-34 212.1 6.5 123 29-153 67-234 (758)
19 PRK10590 ATP-dependent RNA hel 100.0 4.6E-29 1E-33 208.6 11.2 119 32-152 2-167 (456)
20 KOG0342 ATP-dependent RNA heli 100.0 2E-29 4.3E-34 206.6 7.1 122 31-154 82-250 (543)
21 PRK11192 ATP-dependent RNA hel 100.0 1.1E-28 2.4E-33 204.8 11.6 120 32-153 2-166 (434)
22 KOG0340 ATP-dependent RNA heli 100.0 1.6E-29 3.5E-34 200.8 5.5 123 30-154 6-173 (442)
23 PRK04537 ATP-dependent RNA hel 100.0 1.9E-28 4.1E-33 209.8 11.6 121 31-153 9-178 (572)
24 PRK11634 ATP-dependent RNA hel 100.0 3.3E-28 7.2E-33 210.0 11.2 121 31-153 6-168 (629)
25 KOG0347 RNA helicase [RNA proc 99.9 3.1E-28 6.8E-33 202.0 7.5 123 27-151 177-357 (731)
26 KOG0328 Predicted ATP-dependen 99.9 5.1E-28 1.1E-32 187.9 4.6 129 24-154 20-189 (400)
27 PRK01297 ATP-dependent RNA hel 99.9 6.9E-27 1.5E-31 196.3 11.4 122 30-153 86-256 (475)
28 PTZ00424 helicase 45; Provisio 99.9 6.8E-26 1.5E-30 185.8 12.1 122 29-152 26-188 (401)
29 KOG0337 ATP-dependent RNA heli 99.9 1.9E-26 4.1E-31 186.6 3.3 123 30-154 20-184 (529)
30 KOG0326 ATP-dependent RNA heli 99.9 4.2E-27 9.2E-32 185.3 -0.6 121 31-153 85-246 (459)
31 KOG0344 ATP-dependent RNA heli 99.9 1.3E-25 2.9E-30 187.2 5.5 141 12-154 113-309 (593)
32 KOG0350 DEAD-box ATP-dependent 99.9 3.5E-25 7.5E-30 182.2 7.0 113 39-153 147-314 (620)
33 TIGR03817 DECH_helic helicase/ 99.9 5.7E-24 1.2E-28 186.7 11.9 112 36-149 21-172 (742)
34 cd00268 DEADc DEAD-box helicas 99.9 3.8E-23 8.1E-28 155.0 12.7 118 33-152 1-161 (203)
35 KOG0327 Translation initiation 99.9 4.2E-24 9E-29 171.1 5.0 128 25-154 20-189 (397)
36 KOG0329 ATP-dependent RNA heli 99.9 3.2E-23 6.9E-28 159.5 4.0 123 25-149 36-200 (387)
37 KOG4284 DEAD box protein [Tran 99.9 4.7E-23 1E-27 174.1 5.2 125 26-153 20-187 (980)
38 PRK02362 ski2-like helicase; P 99.9 7.9E-22 1.7E-26 173.4 9.2 118 32-151 2-154 (737)
39 COG1201 Lhr Lhr-like helicases 99.9 8.9E-22 1.9E-26 172.1 9.0 115 32-149 4-164 (814)
40 KOG0332 ATP-dependent RNA heli 99.9 1.1E-22 2.3E-27 162.9 2.6 125 28-154 87-253 (477)
41 PRK00254 ski2-like helicase; P 99.9 1.4E-21 3E-26 171.4 9.1 118 32-151 2-155 (720)
42 PRK13767 ATP-dependent helicas 99.9 2.9E-21 6.3E-26 172.3 11.1 116 32-150 14-188 (876)
43 PF00270 DEAD: DEAD/DEAH box h 99.8 8.8E-21 1.9E-25 137.7 8.5 98 53-152 1-137 (169)
44 KOG0349 Putative DEAD-box RNA 99.8 1.9E-21 4.2E-26 158.7 5.3 64 31-94 2-67 (725)
45 PRK01172 ski2-like helicase; P 99.8 5E-20 1.1E-24 160.6 9.2 117 32-151 2-152 (674)
46 PRK12899 secA preprotein trans 99.8 4E-19 8.6E-24 156.5 10.2 108 38-149 71-230 (970)
47 TIGR00614 recQ_fam ATP-depende 99.8 3.6E-19 7.9E-24 149.5 9.3 105 45-151 5-144 (470)
48 PRK09401 reverse gyrase; Revie 99.8 1.2E-18 2.6E-23 158.7 11.3 105 38-148 67-215 (1176)
49 PLN03137 ATP-dependent DNA hel 99.8 5.8E-19 1.2E-23 158.1 8.0 112 38-151 446-598 (1195)
50 TIGR01054 rgy reverse gyrase. 99.8 1.8E-18 4E-23 157.6 11.3 111 38-154 65-230 (1171)
51 COG1205 Distinct helicase fami 99.8 2.1E-18 4.6E-23 153.1 11.0 110 32-142 50-204 (851)
52 PRK14701 reverse gyrase; Provi 99.8 1.3E-18 2.9E-23 161.8 10.1 106 38-148 66-214 (1638)
53 TIGR01389 recQ ATP-dependent D 99.8 1.4E-18 3E-23 149.6 8.1 105 42-151 3-144 (591)
54 PRK11057 ATP-dependent DNA hel 99.7 5.4E-18 1.2E-22 146.4 9.7 109 41-151 14-156 (607)
55 TIGR02621 cas3_GSU0051 CRISPR- 99.7 1.1E-17 2.4E-22 147.2 8.1 99 47-154 12-189 (844)
56 PRK10917 ATP-dependent DNA hel 99.6 1.3E-15 2.8E-20 133.2 9.8 97 42-146 253-395 (681)
57 TIGR00580 mfd transcription-re 99.6 2.1E-15 4.5E-20 135.1 10.5 101 38-146 438-585 (926)
58 TIGR00643 recG ATP-dependent D 99.6 2.6E-15 5.6E-20 130.3 10.1 101 38-146 223-369 (630)
59 PRK10689 transcription-repair 99.6 1.9E-14 4.2E-19 131.2 10.6 101 38-146 588-734 (1147)
60 smart00487 DEXDc DEAD-like hel 99.5 3.8E-14 8.3E-19 103.5 9.5 101 46-148 3-143 (201)
61 PRK09200 preprotein translocas 99.5 2.9E-14 6.2E-19 125.5 8.6 103 40-147 67-212 (790)
62 TIGR00963 secA preprotein tran 99.5 2.1E-14 4.5E-19 125.1 7.0 104 40-148 45-190 (745)
63 COG1204 Superfamily II helicas 99.5 3.3E-14 7.1E-19 125.3 7.3 112 36-149 16-161 (766)
64 TIGR03714 secA2 accessory Sec 99.5 4.5E-14 9.7E-19 123.6 8.0 98 47-149 67-210 (762)
65 KOG0952 DNA/RNA helicase MER3/ 99.5 2.2E-14 4.8E-19 126.7 5.3 111 32-148 93-252 (1230)
66 COG0514 RecQ Superfamily II DN 99.4 1.8E-13 4E-18 116.7 7.2 112 41-154 6-153 (590)
67 PRK12898 secA preprotein trans 99.4 4.2E-13 9E-18 116.1 8.1 93 51-147 103-255 (656)
68 PRK09751 putative ATP-dependen 99.4 1.9E-13 4.1E-18 126.5 5.9 77 71-149 1-139 (1490)
69 COG1202 Superfamily II helicas 99.4 9.5E-13 2.1E-17 111.1 9.5 111 35-148 200-352 (830)
70 PRK13104 secA preprotein trans 99.4 3.8E-13 8.2E-18 119.0 6.9 93 51-147 82-215 (896)
71 TIGR01407 dinG_rel DnaQ family 99.4 2.8E-12 6.2E-17 114.7 12.1 59 33-92 228-290 (850)
72 PHA02558 uvsW UvsW helicase; P 99.3 4E-12 8.7E-17 107.9 8.6 97 49-151 112-239 (501)
73 TIGR01970 DEAH_box_HrpB ATP-de 99.3 2.3E-12 5E-17 114.5 6.3 91 58-151 9-131 (819)
74 PRK13766 Hef nuclease; Provisi 99.3 9.5E-12 2.1E-16 110.2 10.1 96 50-148 14-145 (773)
75 PHA02653 RNA helicase NPH-II; 99.3 4.8E-12 1E-16 110.4 6.2 88 54-150 167-307 (675)
76 PRK05580 primosome assembly pr 99.3 1.8E-11 3.8E-16 107.3 9.0 87 51-146 144-270 (679)
77 PRK11664 ATP-dependent RNA hel 99.3 4.6E-12 1E-16 112.6 5.1 89 58-149 12-132 (812)
78 TIGR03158 cas3_cyano CRISPR-as 99.2 2E-11 4.3E-16 99.6 7.8 35 55-89 1-37 (357)
79 PRK12904 preprotein translocas 99.2 1.3E-11 2.9E-16 108.9 6.8 95 48-147 79-214 (830)
80 KOG0352 ATP-dependent DNA heli 99.2 3E-11 6.5E-16 99.2 7.8 112 38-154 5-163 (641)
81 TIGR01587 cas3_core CRISPR-ass 99.2 1.4E-11 3.1E-16 99.8 4.8 82 68-151 1-141 (358)
82 KOG0354 DEAD-box like helicase 99.2 2.9E-11 6.3E-16 105.1 6.7 107 38-147 49-192 (746)
83 PRK11131 ATP-dependent RNA hel 99.2 4.3E-11 9.4E-16 109.7 6.3 89 59-152 82-205 (1294)
84 PRK08074 bifunctional ATP-depe 99.1 3.2E-10 7E-15 102.4 9.8 45 48-93 255-303 (928)
85 PRK13107 preprotein translocas 99.1 6E-11 1.3E-15 105.1 4.6 95 51-149 82-217 (908)
86 COG1111 MPH1 ERCC4-like helica 99.1 3.4E-10 7.4E-15 94.4 7.9 93 52-147 16-144 (542)
87 cd00046 DEXDc DEAD-like helica 99.1 5.6E-10 1.2E-14 76.8 7.3 82 67-150 1-119 (144)
88 COG4581 Superfamily II RNA hel 99.0 2.1E-09 4.5E-14 96.7 10.4 103 44-149 113-244 (1041)
89 KOG0351 ATP-dependent DNA heli 99.0 6.1E-10 1.3E-14 99.9 5.9 111 39-151 251-402 (941)
90 PRK07246 bifunctional ATP-depe 98.9 3E-09 6.4E-14 95.1 8.6 44 47-91 242-289 (820)
91 PRK11747 dinG ATP-dependent DN 98.9 7.6E-09 1.7E-13 91.1 9.7 47 48-95 23-78 (697)
92 TIGR01967 DEAH_box_HrpA ATP-de 98.9 1.9E-09 4E-14 99.3 5.1 102 46-152 59-198 (1283)
93 KOG0951 RNA helicase BRR2, DEA 98.9 1.6E-09 3.5E-14 98.0 4.4 110 34-148 294-451 (1674)
94 PF04851 ResIII: Type III rest 98.9 4.8E-09 1E-13 76.4 6.1 95 51-149 3-161 (184)
95 KOG0353 ATP-dependent DNA heli 98.8 6.2E-09 1.3E-13 84.9 5.7 116 34-151 74-232 (695)
96 COG1199 DinG Rad3-related DNA 98.8 3.2E-08 7E-13 86.4 10.3 51 45-95 9-63 (654)
97 TIGR03117 cas_csf4 CRISPR-asso 98.8 3.9E-08 8.4E-13 85.5 9.1 32 61-92 11-42 (636)
98 smart00489 DEXDc3 DEAD-like he 98.7 5.1E-08 1.1E-12 77.6 6.1 43 52-94 9-55 (289)
99 smart00488 DEXDc2 DEAD-like he 98.7 5.1E-08 1.1E-12 77.6 6.1 43 52-94 9-55 (289)
100 KOG0947 Cytoplasmic exosomal R 98.6 2.1E-07 4.5E-12 82.9 9.0 101 46-149 293-418 (1248)
101 PRK11448 hsdR type I restricti 98.5 7E-07 1.5E-11 82.2 10.4 94 51-147 413-553 (1123)
102 TIGR00604 rad3 DNA repair heli 98.5 3.8E-07 8.3E-12 80.5 8.4 47 48-94 7-57 (705)
103 PRK09694 helicase Cas3; Provis 98.5 3.1E-07 6.8E-12 82.5 7.5 41 49-89 284-324 (878)
104 TIGR00595 priA primosomal prot 98.5 1.9E-07 4.2E-12 79.5 5.6 69 70-147 1-106 (505)
105 COG1061 SSL2 DNA or RNA helica 98.4 2E-07 4.4E-12 78.2 4.1 98 50-151 35-163 (442)
106 KOG0948 Nuclear exosomal RNA h 98.4 7.1E-07 1.5E-11 78.0 7.3 97 51-149 129-250 (1041)
107 PF07517 SecA_DEAD: SecA DEAD- 98.4 4.8E-07 1E-11 71.2 5.5 101 42-147 68-210 (266)
108 COG1200 RecG RecG-like helicas 98.3 1.6E-06 3.5E-11 75.1 7.6 99 40-146 252-396 (677)
109 KOG0951 RNA helicase BRR2, DEA 98.3 1.5E-07 3.3E-12 85.5 1.3 114 27-148 1118-1266(1674)
110 PRK13103 secA preprotein trans 98.3 9.3E-07 2E-11 79.0 5.3 93 50-147 81-215 (913)
111 PRK12906 secA preprotein trans 98.3 1.5E-06 3.2E-11 77.2 5.8 104 39-147 68-213 (796)
112 PF13086 AAA_11: AAA domain; P 98.3 1.3E-06 2.8E-11 65.7 4.8 32 51-82 1-33 (236)
113 PRK12902 secA preprotein trans 98.2 3.1E-06 6.7E-11 75.6 7.3 93 51-147 85-218 (939)
114 PRK12326 preprotein translocas 98.2 3.1E-06 6.8E-11 74.3 5.5 96 48-148 76-212 (764)
115 PF13604 AAA_30: AAA domain; P 98.1 1.9E-06 4.2E-11 64.8 3.3 32 51-82 1-34 (196)
116 PF02562 PhoH: PhoH-like prote 98.1 5.6E-06 1.2E-10 62.8 5.8 45 49-93 2-46 (205)
117 TIGR00603 rad25 DNA repair hel 98.1 2.2E-06 4.8E-11 75.6 3.4 97 51-151 255-392 (732)
118 KOG1132 Helicase of the DEAD s 98.1 8.6E-06 1.9E-10 72.2 6.5 44 51-94 21-68 (945)
119 KOG0949 Predicted helicase, DE 98.1 9.4E-06 2E-10 72.9 6.6 94 51-146 511-644 (1330)
120 TIGR00348 hsdR type I site-spe 98.1 2E-05 4.2E-10 69.5 8.6 94 52-148 239-379 (667)
121 CHL00122 secA preprotein trans 98.0 7.2E-06 1.6E-10 73.2 5.0 103 40-147 65-209 (870)
122 COG1110 Reverse gyrase [DNA re 98.0 4.6E-05 1E-09 68.8 9.9 109 38-150 69-219 (1187)
123 KOG1803 DNA helicase [Replicat 97.9 5.3E-05 1.1E-09 65.1 7.6 42 51-92 185-227 (649)
124 PRK12903 secA preprotein trans 97.9 4.2E-05 9.1E-10 68.4 7.0 103 40-147 67-211 (925)
125 PRK13889 conjugal transfer rel 97.8 0.00014 3E-09 66.5 10.3 95 51-149 346-447 (988)
126 KOG0950 DNA polymerase theta/e 97.8 1.5E-05 3.2E-10 71.2 3.6 112 37-150 208-357 (1008)
127 COG4098 comFA Superfamily II D 97.8 4.9E-05 1.1E-09 61.6 6.0 86 51-146 97-214 (441)
128 PRK10536 hypothetical protein; 97.8 0.00021 4.6E-09 56.1 8.8 47 47-93 55-101 (262)
129 COG4889 Predicted helicase [Ge 97.7 9.9E-05 2.1E-09 66.1 6.0 112 31-147 140-317 (1518)
130 COG1198 PriA Primosomal protei 97.6 0.00015 3.2E-09 64.3 7.0 85 50-142 197-322 (730)
131 PF01695 IstB_IS21: IstB-like 97.6 0.00022 4.9E-09 52.8 6.9 64 64-142 45-117 (178)
132 COG4096 HsdR Type I site-speci 97.6 0.00012 2.6E-09 65.0 6.2 92 51-145 165-296 (875)
133 PRK08181 transposase; Validate 97.6 0.00031 6.8E-09 55.5 8.1 78 53-146 89-179 (269)
134 TIGR02768 TraA_Ti Ti-type conj 97.6 0.00032 6.9E-09 62.6 8.9 95 51-149 352-453 (744)
135 PF14617 CMS1: U3-containing 9 97.6 0.00026 5.6E-09 55.4 6.7 42 99-141 167-209 (252)
136 COG1643 HrpA HrpA-like helicas 97.5 0.00031 6.7E-09 63.2 7.7 85 58-145 57-173 (845)
137 PRK06526 transposase; Provisio 97.5 0.0002 4.3E-09 56.1 5.7 69 62-146 94-171 (254)
138 TIGR01448 recD_rel helicase, p 97.5 0.00069 1.5E-08 60.3 9.1 35 47-82 320-354 (720)
139 PF12340 DUF3638: Protein of u 97.5 0.00053 1.2E-08 52.9 7.3 110 38-152 12-190 (229)
140 PRK12900 secA preprotein trans 97.4 0.00013 2.8E-09 66.2 3.7 93 51-147 138-271 (1025)
141 COG1197 Mfd Transcription-repa 97.4 0.001 2.2E-08 61.2 8.6 99 39-145 582-727 (1139)
142 KOG1802 RNA helicase nonsense 97.4 0.00077 1.7E-08 58.9 7.5 47 44-90 403-449 (935)
143 KOG0920 ATP-dependent RNA heli 97.3 0.00047 1E-08 62.3 6.0 90 53-145 175-298 (924)
144 COG2805 PilT Tfp pilus assembl 97.3 0.00059 1.3E-08 54.7 5.8 55 26-98 101-156 (353)
145 PF09848 DUF2075: Uncharacteri 97.3 0.00031 6.8E-09 57.3 4.3 79 68-149 3-98 (352)
146 PRK12901 secA preprotein trans 97.2 0.00032 6.9E-09 63.9 3.9 93 51-147 169-303 (1112)
147 KOG0991 Replication factor C, 97.2 0.00061 1.3E-08 53.0 4.8 73 67-148 49-127 (333)
148 COG2804 PulE Type II secretory 97.1 0.0014 3.1E-08 55.6 6.6 49 44-96 237-287 (500)
149 COG1484 DnaC DNA replication p 97.1 0.0014 2.9E-08 51.4 5.9 80 48-142 80-176 (254)
150 TIGR01447 recD exodeoxyribonuc 97.1 0.0021 4.5E-08 56.1 7.4 30 54-83 148-177 (586)
151 cd00009 AAA The AAA+ (ATPases 97.1 0.003 6.4E-08 43.3 7.0 17 66-82 19-35 (151)
152 PRK13826 Dtr system oriT relax 97.0 0.0053 1.1E-07 56.9 9.8 95 51-149 381-482 (1102)
153 PLN03142 Probable chromatin-re 97.0 0.0026 5.7E-08 58.6 7.4 93 51-148 169-305 (1033)
154 KOG0952 DNA/RNA helicase MER3/ 97.0 8.5E-05 1.8E-09 67.2 -2.1 96 48-146 924-1058(1230)
155 PRK10875 recD exonuclease V su 96.9 0.0013 2.9E-08 57.5 5.1 31 53-83 154-184 (615)
156 PRK06835 DNA replication prote 96.9 0.0034 7.3E-08 51.0 6.8 67 65-147 182-259 (329)
157 PF13401 AAA_22: AAA domain; P 96.9 0.00066 1.4E-08 46.8 2.3 19 65-83 3-21 (131)
158 PRK08727 hypothetical protein; 96.9 0.0019 4.2E-08 49.7 5.0 65 67-147 42-106 (233)
159 COG1474 CDC6 Cdc6-related prot 96.9 0.0035 7.5E-08 51.7 6.5 17 67-83 43-59 (366)
160 KOG1805 DNA replication helica 96.8 0.0022 4.7E-08 58.0 5.6 35 49-83 667-702 (1100)
161 PRK13894 conjugal transfer ATP 96.8 0.0062 1.3E-07 49.3 7.7 47 42-91 125-172 (319)
162 PRK04914 ATP-dependent helicas 96.8 0.0021 4.5E-08 58.9 5.2 95 51-147 152-285 (956)
163 PF00176 SNF2_N: SNF2 family N 96.8 0.0022 4.8E-08 50.1 4.8 23 65-87 24-46 (299)
164 PHA00729 NTP-binding motif con 96.8 0.0066 1.4E-07 46.8 7.3 74 67-142 18-91 (226)
165 PRK06893 DNA replication initi 96.8 0.0021 4.6E-08 49.3 4.5 65 67-147 40-104 (229)
166 PRK07952 DNA replication prote 96.8 0.0053 1.1E-07 47.9 6.7 65 67-147 100-175 (244)
167 TIGR03420 DnaA_homol_Hda DnaA 96.8 0.0038 8.2E-08 47.2 5.8 67 65-147 37-103 (226)
168 COG1875 NYN ribonuclease and A 96.8 0.012 2.5E-07 48.6 8.7 51 46-96 223-275 (436)
169 KOG0922 DEAH-box RNA helicase 96.7 0.0031 6.7E-08 55.0 5.6 34 109-145 141-174 (674)
170 PRK11331 5-methylcytosine-spec 96.7 0.0044 9.6E-08 52.3 6.4 31 53-83 181-211 (459)
171 PRK12377 putative replication 96.7 0.008 1.7E-07 47.0 7.2 64 67-146 102-175 (248)
172 TIGR02688 conserved hypothetic 96.7 0.0043 9.4E-08 52.0 5.8 89 38-145 173-271 (449)
173 PRK08116 hypothetical protein; 96.6 0.017 3.7E-07 45.6 8.4 63 67-145 115-189 (268)
174 KOG0925 mRNA splicing factor A 96.5 0.023 4.9E-07 48.5 9.1 52 30-82 24-78 (699)
175 KOG0989 Replication factor C, 96.5 0.002 4.3E-08 51.8 2.7 22 66-87 57-78 (346)
176 PRK08903 DnaA regulatory inact 96.5 0.011 2.4E-07 44.9 6.8 62 65-146 41-102 (227)
177 PRK08084 DNA replication initi 96.5 0.006 1.3E-07 47.0 5.3 66 66-147 45-110 (235)
178 PF05970 PIF1: PIF1-like helic 96.5 0.012 2.6E-07 48.3 7.2 32 52-83 2-39 (364)
179 TIGR00376 DNA helicase, putati 96.4 0.0073 1.6E-07 53.2 6.1 41 51-92 157-198 (637)
180 COG1219 ClpX ATP-dependent pro 96.4 0.0056 1.2E-07 49.6 4.7 18 65-82 96-113 (408)
181 PRK05642 DNA replication initi 96.4 0.0065 1.4E-07 46.8 4.9 65 67-147 46-110 (234)
182 PF13245 AAA_19: Part of AAA d 96.3 0.0065 1.4E-07 38.8 3.9 49 60-118 3-52 (76)
183 TIGR02538 type_IV_pilB type IV 96.3 0.0096 2.1E-07 51.7 5.9 46 43-92 294-341 (564)
184 PRK10436 hypothetical protein; 96.3 0.01 2.2E-07 50.3 5.9 46 43-92 196-243 (462)
185 COG4962 CpaF Flp pilus assembl 96.2 0.0051 1.1E-07 50.1 3.6 35 48-82 154-189 (355)
186 PF00580 UvrD-helicase: UvrD/R 96.2 0.005 1.1E-07 48.3 3.5 41 52-94 1-41 (315)
187 KOG0926 DEAH-box RNA helicase 96.2 0.0047 1E-07 55.3 3.4 35 108-145 349-383 (1172)
188 TIGR02928 orc1/cdc6 family rep 96.1 0.016 3.4E-07 47.1 6.2 17 67-83 41-57 (365)
189 PTZ00112 origin recognition co 96.1 0.023 5.1E-07 51.8 7.6 17 68-84 782-799 (1164)
190 PRK06921 hypothetical protein; 96.1 0.011 2.4E-07 46.5 5.0 66 65-145 116-188 (266)
191 PRK14712 conjugal transfer nic 96.1 0.02 4.3E-07 55.0 7.3 33 51-83 835-869 (1623)
192 PRK00411 cdc6 cell division co 96.1 0.01 2.2E-07 48.7 4.8 17 67-83 56-72 (394)
193 KOG1133 Helicase of the DEAD s 96.0 0.018 3.8E-07 50.8 6.2 48 51-98 15-66 (821)
194 PRK05707 DNA polymerase III su 96.0 0.018 4E-07 46.7 6.1 94 52-148 4-120 (328)
195 PRK09183 transposase/IS protei 96.0 0.013 2.8E-07 45.9 5.0 68 63-146 99-176 (259)
196 PF07652 Flavi_DEAD: Flaviviru 96.0 0.013 2.9E-07 42.1 4.5 78 65-145 3-106 (148)
197 PRK08769 DNA polymerase III su 96.0 0.032 6.9E-07 45.2 7.2 97 49-148 2-127 (319)
198 PRK08939 primosomal protein Dn 95.9 0.022 4.8E-07 45.8 6.0 62 66-142 156-226 (306)
199 TIGR02533 type_II_gspE general 95.9 0.02 4.4E-07 48.9 5.9 46 43-92 220-267 (486)
200 TIGR00635 ruvB Holliday juncti 95.8 0.0068 1.5E-07 48.1 2.7 17 67-83 31-47 (305)
201 PRK14722 flhF flagellar biosyn 95.8 0.027 5.9E-07 46.5 6.3 20 65-84 136-155 (374)
202 TIGR03499 FlhF flagellar biosy 95.8 0.035 7.7E-07 44.0 6.7 71 66-142 194-281 (282)
203 TIGR02881 spore_V_K stage V sp 95.7 0.011 2.5E-07 46.1 3.6 17 67-83 43-59 (261)
204 PF00308 Bac_DnaA: Bacterial d 95.7 0.024 5.3E-07 43.3 5.3 67 68-148 36-111 (219)
205 PRK14087 dnaA chromosomal repl 95.7 0.022 4.8E-07 48.2 5.5 67 67-147 142-219 (450)
206 cd01129 PulE-GspE PulE/GspE Th 95.7 0.033 7.2E-07 43.8 6.2 46 42-91 57-104 (264)
207 CHL00181 cbbX CbbX; Provisiona 95.7 0.016 3.4E-07 46.2 4.4 19 66-84 59-77 (287)
208 PRK13833 conjugal transfer pro 95.7 0.017 3.6E-07 46.9 4.6 45 44-91 123-168 (323)
209 KOG0741 AAA+-type ATPase [Post 95.7 0.025 5.5E-07 48.8 5.6 73 7-82 184-272 (744)
210 KOG1131 RNA polymerase II tran 95.7 0.047 1E-06 47.0 7.1 43 48-90 13-59 (755)
211 TIGR00362 DnaA chromosomal rep 95.6 0.028 6E-07 46.7 5.7 68 67-148 137-213 (405)
212 COG0470 HolB ATPase involved i 95.6 0.03 6.6E-07 44.3 5.7 81 65-148 22-123 (325)
213 PF05621 TniB: Bacterial TniB 95.6 0.0051 1.1E-07 49.3 1.2 79 67-154 62-165 (302)
214 PRK14088 dnaA chromosomal repl 95.6 0.034 7.4E-07 46.9 6.0 68 67-148 131-208 (440)
215 KOG0742 AAA+-type ATPase [Post 95.5 0.015 3.3E-07 48.7 3.7 62 67-148 385-457 (630)
216 KOG0745 Putative ATP-dependent 95.5 0.023 5E-07 47.9 4.8 17 66-82 226-242 (564)
217 KOG4150 Predicted ATP-dependen 95.5 0.025 5.3E-07 49.3 4.9 104 38-142 273-421 (1034)
218 PRK00080 ruvB Holliday junctio 95.4 0.013 2.8E-07 47.2 3.0 18 67-84 52-69 (328)
219 PRK04296 thymidine kinase; Pro 95.4 0.016 3.5E-07 43.2 3.3 75 66-146 2-90 (190)
220 COG0610 Type I site-specific r 95.4 0.036 7.9E-07 51.1 6.1 35 109-146 351-388 (962)
221 PRK00149 dnaA chromosomal repl 95.4 0.031 6.7E-07 47.1 5.3 67 67-147 149-224 (450)
222 KOG0385 Chromatin remodeling c 95.4 0.044 9.6E-07 49.0 6.3 94 51-149 167-304 (971)
223 PHA02244 ATPase-like protein 95.4 0.1 2.3E-06 43.2 8.1 22 61-82 114-135 (383)
224 PRK12723 flagellar biosynthesi 95.4 0.059 1.3E-06 44.8 6.7 75 66-147 174-267 (388)
225 TIGR02782 TrbB_P P-type conjug 95.3 0.028 6.1E-07 45.0 4.6 46 43-91 110-156 (299)
226 TIGR02880 cbbX_cfxQ probable R 95.3 0.029 6.3E-07 44.5 4.6 18 66-83 58-75 (284)
227 COG1419 FlhF Flagellar GTP-bin 95.3 0.069 1.5E-06 44.5 6.9 72 66-142 203-290 (407)
228 PF05496 RuvB_N: Holliday junc 95.3 0.033 7E-07 43.1 4.6 60 67-147 51-114 (233)
229 PRK12422 chromosomal replicati 95.3 0.048 1E-06 46.1 5.9 66 67-148 142-216 (445)
230 PRK13709 conjugal transfer nic 95.2 0.072 1.6E-06 51.8 7.6 32 51-82 967-1000(1747)
231 TIGR02760 TraI_TIGR conjugativ 95.2 0.086 1.9E-06 52.0 8.1 32 51-82 429-462 (1960)
232 PRK12402 replication factor C 95.2 0.054 1.2E-06 43.3 5.9 16 68-83 38-53 (337)
233 TIGR02760 TraI_TIGR conjugativ 95.2 0.056 1.2E-06 53.2 6.8 34 50-83 1018-1053(1960)
234 PLN03025 replication factor C 95.1 0.015 3.3E-07 46.7 2.5 17 67-83 35-51 (319)
235 COG1203 CRISPR-associated heli 95.1 0.028 6.2E-07 50.3 4.3 44 51-94 195-242 (733)
236 PF01443 Viral_helicase1: Vira 95.1 0.0088 1.9E-07 45.3 0.9 14 69-82 1-14 (234)
237 PRK05703 flhF flagellar biosyn 95.1 0.076 1.7E-06 44.6 6.5 19 66-84 221-239 (424)
238 PF02399 Herpes_ori_bp: Origin 95.0 0.012 2.5E-07 52.8 1.6 36 109-149 122-157 (824)
239 KOG2340 Uncharacterized conser 95.0 0.051 1.1E-06 46.8 5.2 47 50-96 215-264 (698)
240 PRK13900 type IV secretion sys 95.0 0.048 1E-06 44.4 5.0 21 62-82 156-176 (332)
241 PTZ00454 26S protease regulato 95.0 0.04 8.7E-07 45.9 4.6 51 30-83 141-196 (398)
242 TIGR01075 uvrD DNA helicase II 95.0 0.058 1.3E-06 48.1 5.9 91 50-145 3-114 (715)
243 KOG3089 Predicted DEAD-box-con 94.9 0.031 6.8E-07 42.9 3.4 42 99-141 186-228 (271)
244 PRK04195 replication factor C 94.8 0.097 2.1E-06 44.6 6.6 18 66-83 39-56 (482)
245 KOG0924 mRNA splicing factor A 94.8 0.11 2.4E-06 46.1 6.9 28 55-82 360-387 (1042)
246 PRK13851 type IV secretion sys 94.8 0.029 6.3E-07 45.9 3.2 22 61-82 157-178 (344)
247 PF13479 AAA_24: AAA domain 94.7 0.018 4E-07 43.6 1.8 75 66-149 3-83 (213)
248 PRK11054 helD DNA helicase IV; 94.7 0.26 5.6E-06 44.0 9.1 90 50-142 195-301 (684)
249 PF02534 T4SS-DNA_transf: Type 94.6 0.017 3.8E-07 48.6 1.6 22 67-88 45-66 (469)
250 cd01126 TraG_VirD4 The TraG/Tr 94.6 0.013 2.8E-07 48.3 0.8 22 68-89 1-22 (384)
251 PRK06964 DNA polymerase III su 94.5 0.12 2.7E-06 42.2 6.2 32 52-83 2-38 (342)
252 cd01130 VirB11-like_ATPase Typ 94.5 0.06 1.3E-06 39.8 4.0 33 51-83 9-42 (186)
253 KOG0923 mRNA splicing factor A 94.5 0.093 2E-06 46.4 5.6 29 54-82 268-296 (902)
254 PRK14086 dnaA chromosomal repl 94.4 0.091 2E-06 46.1 5.6 67 68-148 316-391 (617)
255 PRK07940 DNA polymerase III su 94.4 0.12 2.5E-06 43.2 6.0 79 67-148 37-131 (394)
256 smart00382 AAA ATPases associa 94.3 0.024 5.2E-07 38.1 1.6 18 66-83 2-19 (148)
257 PRK06090 DNA polymerase III su 94.3 0.17 3.7E-06 41.0 6.6 95 51-148 3-122 (319)
258 PRK12726 flagellar biosynthesi 94.3 0.19 4.1E-06 41.9 6.8 20 65-84 205-224 (407)
259 cd01120 RecA-like_NTPases RecA 94.2 0.047 1E-06 38.3 3.0 15 69-83 2-16 (165)
260 PRK10919 ATP-dependent DNA hel 94.2 0.23 5E-06 44.1 7.8 40 51-92 2-41 (672)
261 KOG0733 Nuclear AAA ATPase (VC 94.2 0.16 3.5E-06 44.6 6.5 59 21-82 177-239 (802)
262 TIGR02562 cas3_yersinia CRISPR 94.2 0.18 4E-06 46.7 7.2 32 52-83 409-448 (1110)
263 PF03029 ATP_bind_1: Conserved 94.2 0.043 9.4E-07 42.5 2.8 24 100-124 84-107 (238)
264 KOG1123 RNA polymerase II tran 94.1 0.033 7.1E-07 47.8 2.2 35 51-85 302-339 (776)
265 TIGR01243 CDC48 AAA family ATP 94.1 0.038 8.3E-07 49.4 2.7 16 67-82 488-503 (733)
266 PRK14963 DNA polymerase III su 94.1 0.17 3.6E-06 43.5 6.5 78 68-148 38-130 (504)
267 PF13177 DNA_pol3_delta2: DNA 94.1 0.15 3.2E-06 37.1 5.4 78 68-148 21-116 (162)
268 PRK14962 DNA polymerase III su 94.1 0.1 2.2E-06 44.5 5.1 17 68-84 38-54 (472)
269 TIGR02640 gas_vesic_GvpN gas v 94.0 0.049 1.1E-06 42.7 2.9 26 58-83 13-38 (262)
270 PRK07993 DNA polymerase III su 94.0 0.13 2.8E-06 41.9 5.5 94 52-148 3-122 (334)
271 PRK08699 DNA polymerase III su 94.0 0.2 4.3E-06 40.6 6.5 91 53-146 3-125 (325)
272 PRK06871 DNA polymerase III su 94.0 0.16 3.6E-06 41.2 6.0 95 52-149 3-122 (325)
273 PRK13850 type IV secretion sys 94.0 0.029 6.4E-07 49.7 1.7 24 67-90 140-163 (670)
274 TIGR00678 holB DNA polymerase 94.0 0.18 3.9E-06 37.1 5.7 79 67-148 15-110 (188)
275 PRK11773 uvrD DNA-dependent he 93.9 0.13 2.8E-06 46.0 5.6 91 50-145 8-119 (721)
276 PRK14961 DNA polymerase III su 93.8 0.17 3.7E-06 41.5 5.9 17 68-84 40-56 (363)
277 PRK14964 DNA polymerase III su 93.8 0.18 4E-06 43.2 6.2 81 67-149 36-131 (491)
278 TIGR00763 lon ATP-dependent pr 93.8 0.082 1.8E-06 47.7 4.3 78 65-148 346-428 (775)
279 PRK11889 flhF flagellar biosyn 93.8 0.19 4.2E-06 42.2 6.0 19 67-85 242-260 (436)
280 PHA02544 44 clamp loader, smal 93.7 0.14 2.9E-06 40.8 5.0 15 68-82 44-59 (316)
281 PF12775 AAA_7: P-loop contain 93.7 0.037 8E-07 43.8 1.7 21 62-82 29-49 (272)
282 TIGR01074 rep ATP-dependent DN 93.7 0.34 7.3E-06 42.8 7.9 70 52-123 2-90 (664)
283 PRK13897 type IV secretion sys 93.7 0.032 6.9E-07 48.9 1.4 24 67-90 159-182 (606)
284 PRK03992 proteasome-activating 93.7 0.094 2E-06 43.5 4.1 16 67-82 166-181 (389)
285 PRK00440 rfc replication facto 93.6 0.18 3.8E-06 39.9 5.5 16 68-83 40-55 (319)
286 PRK14873 primosome assembly pr 93.5 0.11 2.3E-06 46.2 4.3 22 72-93 166-187 (665)
287 TIGR02397 dnaX_nterm DNA polym 93.4 0.25 5.5E-06 39.8 6.2 79 67-148 37-131 (355)
288 PF00437 T2SE: Type II/IV secr 93.4 0.039 8.4E-07 43.1 1.4 29 64-93 125-153 (270)
289 TIGR01243 CDC48 AAA family ATP 93.3 0.13 2.9E-06 46.0 4.7 50 30-82 174-228 (733)
290 PRK13880 conjugal transfer cou 93.3 0.034 7.4E-07 49.0 0.9 23 67-89 176-198 (636)
291 TIGR02785 addA_Gpos recombinat 93.2 0.11 2.4E-06 49.2 4.2 40 52-93 2-41 (1232)
292 COG0653 SecA Preprotein transl 93.2 0.12 2.6E-06 46.7 4.2 93 51-147 80-213 (822)
293 PF14516 AAA_35: AAA-like doma 93.1 0.3 6.5E-06 39.6 6.2 39 54-93 18-57 (331)
294 PRK14958 DNA polymerase III su 93.1 0.16 3.4E-06 43.7 4.8 81 68-151 40-136 (509)
295 PRK14723 flhF flagellar biosyn 93.1 0.28 6E-06 44.2 6.3 19 66-84 185-203 (767)
296 PRK12727 flagellar biosynthesi 93.1 0.4 8.6E-06 41.6 7.0 19 65-83 349-367 (559)
297 PRK13876 conjugal transfer cou 93.0 0.051 1.1E-06 48.2 1.6 24 67-90 145-168 (663)
298 TIGR02524 dot_icm_DotB Dot/Icm 93.0 0.096 2.1E-06 43.1 3.1 26 65-91 133-158 (358)
299 PRK13342 recombination factor 92.9 0.16 3.5E-06 42.3 4.4 17 67-83 37-53 (413)
300 PRK14956 DNA polymerase III su 92.9 0.23 5E-06 42.5 5.3 17 68-84 42-58 (484)
301 KOG0058 Peptide exporter, ABC 92.9 0.046 1E-06 48.4 1.1 31 63-95 491-521 (716)
302 PRK14960 DNA polymerase III su 92.9 0.17 3.7E-06 44.9 4.6 17 68-84 39-55 (702)
303 PF12846 AAA_10: AAA-like doma 92.7 0.1 2.2E-06 40.6 2.8 22 67-89 2-23 (304)
304 TIGR03819 heli_sec_ATPase heli 92.7 0.2 4.3E-06 40.9 4.6 40 41-82 154-194 (340)
305 PRK09111 DNA polymerase III su 92.7 0.23 5E-06 43.6 5.2 78 67-148 47-146 (598)
306 PRK15483 type III restriction- 92.7 0.42 9.1E-06 44.1 6.9 27 67-93 60-86 (986)
307 PRK14969 DNA polymerase III su 92.6 0.27 5.9E-06 42.5 5.5 17 68-84 40-56 (527)
308 TIGR02639 ClpA ATP-dependent C 92.6 0.2 4.3E-06 45.0 4.8 17 67-83 204-220 (731)
309 COG1702 PhoH Phosphate starvat 92.6 0.65 1.4E-05 38.0 7.3 47 49-95 126-172 (348)
310 TIGR01073 pcrA ATP-dependent D 92.6 0.55 1.2E-05 42.0 7.5 40 50-91 3-42 (726)
311 PF06733 DEAD_2: DEAD_2; Inte 92.5 0.061 1.3E-06 39.3 1.3 47 100-149 111-160 (174)
312 TIGR01241 FtsH_fam ATP-depende 92.5 0.21 4.5E-06 42.7 4.7 52 28-82 49-104 (495)
313 COG0630 VirB11 Type IV secreto 92.5 0.11 2.5E-06 41.8 3.0 40 49-89 125-165 (312)
314 KOG2228 Origin recognition com 92.5 0.54 1.2E-05 38.7 6.7 17 66-82 49-65 (408)
315 COG1674 FtsK DNA segregation A 92.5 0.11 2.5E-06 47.3 3.2 32 67-98 531-562 (858)
316 smart00489 DEXDc3 DEAD-like he 92.4 0.19 4.2E-06 40.0 4.1 48 99-149 202-251 (289)
317 smart00488 DEXDc2 DEAD-like he 92.4 0.19 4.2E-06 40.0 4.1 48 99-149 202-251 (289)
318 PRK10865 protein disaggregatio 92.4 0.13 2.9E-06 46.9 3.4 17 67-83 200-216 (857)
319 TIGR02525 plasmid_TraJ plasmid 92.4 0.14 3E-06 42.4 3.3 27 65-92 148-174 (372)
320 TIGR02788 VirB11 P-type DNA tr 92.3 0.14 3E-06 41.1 3.2 21 62-82 140-160 (308)
321 PRK14959 DNA polymerase III su 92.2 0.34 7.4E-06 42.7 5.6 19 67-85 39-57 (624)
322 KOG0744 AAA+-type ATPase [Post 92.2 0.27 5.8E-06 40.3 4.5 15 67-81 178-192 (423)
323 PRK09112 DNA polymerase III su 92.1 1.1 2.3E-05 36.9 8.1 16 68-83 47-62 (351)
324 TIGR03346 chaperone_ClpB ATP-d 92.1 0.15 3.3E-06 46.5 3.5 17 67-83 195-211 (852)
325 TIGR02237 recomb_radB DNA repa 92.0 0.36 7.7E-06 36.0 4.9 25 65-89 11-35 (209)
326 PRK07764 DNA polymerase III su 92.0 0.23 5E-06 45.2 4.4 82 68-151 39-137 (824)
327 cd01131 PilT Pilus retraction 92.0 0.08 1.7E-06 39.7 1.3 23 69-92 4-26 (198)
328 PF01078 Mg_chelatase: Magnesi 92.0 0.14 3E-06 39.0 2.6 26 58-83 13-39 (206)
329 PRK08691 DNA polymerase III su 91.8 0.29 6.3E-06 43.7 4.7 18 67-84 39-56 (709)
330 COG0606 Predicted ATPase with 91.7 0.15 3.3E-06 43.3 2.9 24 59-82 190-214 (490)
331 CHL00195 ycf46 Ycf46; Provisio 91.7 0.19 4.1E-06 43.1 3.4 17 67-83 260-276 (489)
332 PRK06645 DNA polymerase III su 91.7 0.7 1.5E-05 39.9 6.9 19 67-85 44-62 (507)
333 CHL00095 clpC Clp protease ATP 91.7 0.31 6.8E-06 44.3 5.0 74 67-151 201-288 (821)
334 PF13555 AAA_29: P-loop contai 91.7 0.12 2.5E-06 31.8 1.6 19 65-83 22-40 (62)
335 PRK14957 DNA polymerase III su 91.6 0.42 9E-06 41.6 5.5 17 68-84 40-56 (546)
336 PRK05896 DNA polymerase III su 91.6 0.32 6.9E-06 42.7 4.8 18 67-84 39-56 (605)
337 TIGR02767 TraG-Ti Ti-type conj 91.6 0.096 2.1E-06 46.2 1.6 22 67-88 212-233 (623)
338 TIGR00767 rho transcription te 91.6 0.47 1E-05 39.8 5.5 19 64-82 166-184 (415)
339 TIGR00064 ftsY signal recognit 91.5 0.49 1.1E-05 37.4 5.4 18 67-84 73-90 (272)
340 PRK13341 recombination factor 91.5 0.29 6.2E-06 44.0 4.5 17 67-83 53-69 (725)
341 PRK07003 DNA polymerase III su 91.5 0.35 7.6E-06 43.7 5.0 17 68-84 40-56 (830)
342 COG3421 Uncharacterized protei 91.5 0.15 3.3E-06 44.6 2.6 39 107-147 80-125 (812)
343 KOG0990 Replication factor C, 91.4 0.28 6.1E-06 39.9 3.9 77 67-147 63-144 (360)
344 TIGR03345 VI_ClpV1 type VI sec 91.4 0.21 4.5E-06 45.6 3.6 17 67-83 209-225 (852)
345 cd01363 Motor_domain Myosin an 91.3 0.19 4E-06 37.3 2.7 26 58-83 14-41 (186)
346 PRK12724 flagellar biosynthesi 91.3 0.49 1.1E-05 39.9 5.4 18 67-84 224-241 (432)
347 TIGR00959 ffh signal recogniti 91.3 0.5 1.1E-05 39.8 5.5 16 68-83 101-116 (428)
348 PRK00771 signal recognition pa 91.3 0.26 5.7E-06 41.6 3.9 18 67-84 96-113 (437)
349 CHL00176 ftsH cell division pr 91.3 0.37 8E-06 42.7 4.9 17 67-83 217-233 (638)
350 PRK13764 ATPase; Provisional 91.3 0.19 4.1E-06 44.1 3.0 28 64-92 255-282 (602)
351 PLN00020 ribulose bisphosphate 91.2 0.15 3.2E-06 42.5 2.2 74 67-148 149-226 (413)
352 PRK14950 DNA polymerase III su 91.2 0.53 1.2E-05 41.2 5.8 79 67-148 39-134 (585)
353 cd00984 DnaB_C DnaB helicase C 91.2 0.62 1.4E-05 35.4 5.6 20 64-83 11-30 (242)
354 PRK05986 cob(I)alamin adenolsy 91.1 0.25 5.5E-06 37.2 3.2 88 64-153 20-134 (191)
355 PRK05563 DNA polymerase III su 91.1 0.52 1.1E-05 41.1 5.6 80 67-149 39-134 (559)
356 PRK14955 DNA polymerase III su 91.1 0.5 1.1E-05 39.3 5.3 18 68-85 40-57 (397)
357 COG1435 Tdk Thymidine kinase [ 91.1 0.29 6.2E-06 37.0 3.5 78 68-149 6-96 (201)
358 TIGR03345 VI_ClpV1 type VI sec 91.1 0.18 3.8E-06 46.1 2.8 16 68-83 598-613 (852)
359 TIGR01618 phage_P_loop phage n 91.0 0.053 1.2E-06 41.7 -0.6 73 67-148 13-95 (220)
360 PF13337 Lon_2: Putative ATP-d 91.0 0.29 6.4E-06 41.4 3.8 87 38-146 172-271 (457)
361 PRK11034 clpA ATP-dependent Cl 90.9 0.35 7.7E-06 43.6 4.5 18 66-83 207-224 (758)
362 PRK10787 DNA-binding ATP-depen 90.9 0.23 4.9E-06 45.0 3.3 77 65-148 348-430 (784)
363 PF06862 DUF1253: Protein of u 90.9 0.21 4.5E-06 42.3 2.8 41 108-150 131-177 (442)
364 COG0556 UvrB Helicase subunit 90.9 0.6 1.3E-05 40.5 5.6 71 51-138 12-90 (663)
365 PRK13531 regulatory ATPase Rav 90.9 0.28 6.2E-06 42.0 3.7 45 38-83 12-56 (498)
366 PRK13822 conjugal transfer cou 90.9 0.13 2.9E-06 45.4 1.8 22 67-88 225-246 (641)
367 PHA01747 putative ATP-dependen 90.8 0.39 8.5E-06 39.9 4.3 61 65-146 189-254 (425)
368 PRK06995 flhF flagellar biosyn 90.8 0.81 1.8E-05 39.2 6.3 19 66-84 256-274 (484)
369 PRK14949 DNA polymerase III su 90.8 0.19 4.2E-06 46.0 2.7 17 69-85 41-57 (944)
370 TIGR01420 pilT_fam pilus retra 90.7 0.15 3.2E-06 41.6 1.8 26 65-91 121-146 (343)
371 PRK12323 DNA polymerase III su 90.7 0.61 1.3E-05 41.5 5.7 80 68-150 40-140 (700)
372 PF13207 AAA_17: AAA domain; P 90.7 0.13 2.8E-06 34.8 1.3 14 69-82 2-15 (121)
373 PF07728 AAA_5: AAA domain (dy 90.6 0.13 2.9E-06 35.7 1.3 16 68-83 1-16 (139)
374 PRK14948 DNA polymerase III su 90.5 0.61 1.3E-05 41.2 5.5 79 67-148 39-135 (620)
375 PF13671 AAA_33: AAA domain; P 90.4 0.14 3E-06 35.5 1.3 14 69-82 2-15 (143)
376 PRK14953 DNA polymerase III su 90.4 0.68 1.5E-05 39.7 5.6 17 69-85 41-57 (486)
377 PRK14951 DNA polymerase III su 90.4 0.43 9.3E-06 42.1 4.5 80 69-151 41-141 (618)
378 KOG0741 AAA+-type ATPase [Post 90.4 0.23 5E-06 43.1 2.7 66 67-150 539-614 (744)
379 COG1132 MdlB ABC-type multidru 90.3 0.15 3.3E-06 44.1 1.6 20 63-82 352-371 (567)
380 KOG2373 Predicted mitochondria 90.2 0.12 2.6E-06 42.6 0.8 52 29-82 231-289 (514)
381 TIGR00602 rad24 checkpoint pro 90.2 0.54 1.2E-05 41.6 4.9 16 68-83 112-127 (637)
382 COG2255 RuvB Holliday junction 90.2 0.39 8.5E-06 38.6 3.6 60 67-147 53-116 (332)
383 PF00004 AAA: ATPase family as 90.1 0.16 3.4E-06 34.5 1.3 14 69-82 1-14 (132)
384 cd01394 radB RadB. The archaea 90.1 0.42 9E-06 35.9 3.7 20 66-85 19-38 (218)
385 KOG2227 Pre-initiation complex 90.0 0.37 7.9E-06 41.1 3.6 18 66-83 175-192 (529)
386 PF10412 TrwB_AAD_bind: Type I 90.0 0.25 5.5E-06 40.9 2.7 32 62-94 11-42 (386)
387 PRK07133 DNA polymerase III su 90.0 1.1 2.3E-05 40.4 6.6 78 68-148 42-132 (725)
388 PRK14970 DNA polymerase III su 89.9 0.11 2.3E-06 42.5 0.3 17 67-83 40-56 (367)
389 cd01393 recA_like RecA is a b 89.9 0.48 1E-05 35.7 3.9 20 66-85 19-38 (226)
390 PF00448 SRP54: SRP54-type pro 89.9 0.16 3.5E-06 38.1 1.3 15 69-83 4-18 (196)
391 PRK07399 DNA polymerase III su 89.8 0.77 1.7E-05 37.1 5.2 48 67-116 27-77 (314)
392 PRK08451 DNA polymerase III su 89.8 0.8 1.7E-05 39.7 5.6 78 69-149 39-132 (535)
393 PF13238 AAA_18: AAA domain; P 89.8 0.18 3.8E-06 34.1 1.3 14 69-82 1-14 (129)
394 KOG0731 AAA+-type ATPase conta 89.8 0.71 1.5E-05 41.6 5.3 65 67-146 345-415 (774)
395 CHL00095 clpC Clp protease ATP 89.7 0.15 3.2E-06 46.3 1.1 16 68-83 541-556 (821)
396 PHA00012 I assembly protein 89.7 0.76 1.7E-05 37.6 5.0 26 69-94 4-29 (361)
397 PRK14721 flhF flagellar biosyn 89.7 1.2 2.7E-05 37.5 6.4 19 66-84 191-209 (420)
398 cd01368 KISc_KIF23_like Kinesi 89.6 0.31 6.8E-06 39.7 2.9 25 59-83 80-106 (345)
399 PRK07471 DNA polymerase III su 89.6 1.3 2.8E-05 36.6 6.4 16 68-83 43-58 (365)
400 PRK14952 DNA polymerase III su 89.5 0.68 1.5E-05 40.6 5.0 17 69-85 38-54 (584)
401 cd01370 KISc_KIP3_like Kinesin 89.4 0.37 8E-06 39.2 3.1 25 59-83 79-105 (338)
402 PTZ00361 26 proteosome regulat 89.4 0.16 3.4E-06 43.0 1.0 19 65-83 216-234 (438)
403 PRK09361 radB DNA repair and r 89.2 0.42 9.1E-06 36.1 3.2 23 66-88 23-45 (225)
404 TIGR00631 uvrb excinuclease AB 89.2 0.91 2E-05 40.4 5.6 33 51-83 9-46 (655)
405 TIGR03015 pepcterm_ATPase puta 89.2 0.42 9.1E-06 36.9 3.2 33 51-83 23-60 (269)
406 PRK07994 DNA polymerase III su 89.2 0.65 1.4E-05 41.2 4.7 16 69-84 41-56 (647)
407 cd00561 CobA_CobO_BtuR ATP:cor 89.2 0.64 1.4E-05 33.9 3.9 23 129-153 92-114 (159)
408 cd01367 KISc_KIF2_like Kinesin 89.2 0.33 7.2E-06 39.2 2.7 26 59-84 76-103 (322)
409 cd01365 KISc_KIF1A_KIF1B Kines 89.1 0.36 7.8E-06 39.5 2.8 25 59-83 80-106 (356)
410 cd01373 KISc_KLP2_like Kinesin 89.1 0.35 7.7E-06 39.3 2.8 25 59-83 66-92 (337)
411 TIGR00596 rad1 DNA repair prot 89.1 0.48 1E-05 43.1 3.8 44 104-149 3-46 (814)
412 PF09439 SRPRB: Signal recogni 88.9 0.21 4.6E-06 37.2 1.2 20 66-85 3-22 (181)
413 cd01127 TrwB Bacterial conjuga 88.8 0.26 5.7E-06 41.1 1.9 31 60-91 36-66 (410)
414 cd01369 KISc_KHC_KIF5 Kinesin 88.7 0.39 8.6E-06 38.7 2.8 24 59-82 68-93 (325)
415 PF13191 AAA_16: AAA ATPase do 88.6 0.2 4.4E-06 36.1 1.0 27 66-93 24-50 (185)
416 PRK14530 adenylate kinase; Pro 88.6 0.24 5.2E-06 37.4 1.4 18 65-82 2-19 (215)
417 cd01376 KISc_KID_like Kinesin 88.6 0.47 1E-05 38.2 3.2 25 59-83 72-98 (319)
418 PF14532 Sigma54_activ_2: Sigm 88.6 0.56 1.2E-05 32.8 3.2 21 62-82 17-37 (138)
419 KOG0060 Long-chain acyl-CoA tr 88.5 0.23 5E-06 43.3 1.3 22 62-83 457-478 (659)
420 COG2842 Uncharacterized ATPase 88.4 0.19 4.2E-06 40.2 0.8 84 61-152 89-183 (297)
421 PF01580 FtsK_SpoIIIE: FtsK/Sp 88.3 0.41 8.8E-06 35.7 2.5 23 67-89 39-61 (205)
422 PHA00350 putative assembly pro 88.2 0.73 1.6E-05 38.5 4.1 17 69-85 4-20 (399)
423 PRK04328 hypothetical protein; 88.2 1.6 3.6E-05 33.8 5.9 18 65-82 22-39 (249)
424 KOG2004 Mitochondrial ATP-depe 88.2 2.6 5.6E-05 38.0 7.5 107 38-152 403-522 (906)
425 PF03193 DUF258: Protein of un 88.1 0.68 1.5E-05 33.9 3.5 44 39-82 3-51 (161)
426 COG0466 Lon ATP-dependent Lon 88.1 0.88 1.9E-05 40.7 4.7 103 38-149 315-432 (782)
427 PRK14729 miaA tRNA delta(2)-is 88.1 0.27 5.8E-06 39.6 1.4 17 67-83 5-21 (300)
428 KOG0652 26S proteasome regulat 88.1 1.7 3.7E-05 34.8 5.8 18 67-84 206-223 (424)
429 PF00225 Kinesin: Kinesin moto 88.0 0.46 1E-05 38.3 2.8 27 59-85 66-94 (335)
430 KOG0738 AAA+-type ATPase [Post 87.9 0.31 6.7E-06 40.8 1.7 22 61-82 235-261 (491)
431 cd01375 KISc_KIF9_like Kinesin 87.9 0.51 1.1E-05 38.3 3.0 25 59-83 72-98 (334)
432 TIGR03600 phage_DnaB phage rep 87.8 2.4 5.1E-05 35.4 7.0 22 63-84 191-212 (421)
433 PRK06731 flhF flagellar biosyn 87.6 2.2 4.7E-05 33.8 6.3 21 65-85 74-94 (270)
434 PRK10078 ribose 1,5-bisphospho 87.5 0.33 7.1E-06 35.8 1.5 18 66-83 2-19 (186)
435 COG2256 MGS1 ATPase related to 87.5 0.33 7.1E-06 40.6 1.6 17 67-83 49-65 (436)
436 PRK09354 recA recombinase A; P 87.5 1.3 2.9E-05 36.4 5.1 80 66-147 60-151 (349)
437 PF06745 KaiC: KaiC; InterPro 87.4 0.61 1.3E-05 35.2 3.0 29 65-93 18-46 (226)
438 cd01374 KISc_CENP_E Kinesin mo 87.4 0.54 1.2E-05 37.8 2.8 26 59-84 65-92 (321)
439 PRK05298 excinuclease ABC subu 87.1 1.2 2.7E-05 39.5 5.1 33 51-83 12-49 (652)
440 PRK08058 DNA polymerase III su 87.1 1.6 3.5E-05 35.3 5.4 78 68-148 30-124 (329)
441 PRK14965 DNA polymerase III su 87.0 1.3 2.8E-05 38.8 5.1 18 68-85 40-57 (576)
442 KOG1533 Predicted GTPase [Gene 87.0 0.53 1.2E-05 36.9 2.4 27 69-96 5-31 (290)
443 TIGR02012 tigrfam_recA protein 86.8 1.3 2.9E-05 35.9 4.8 79 66-147 55-146 (321)
444 COG1224 TIP49 DNA helicase TIP 86.8 0.37 7.9E-06 40.0 1.5 20 64-83 63-82 (450)
445 KOG0390 DNA repair protein, SN 86.8 2.9 6.3E-05 37.9 7.2 45 51-96 238-292 (776)
446 cd01372 KISc_KIF4 Kinesin moto 86.8 0.56 1.2E-05 38.0 2.6 24 60-83 66-91 (341)
447 COG0714 MoxR-like ATPases [Gen 86.7 0.63 1.4E-05 37.5 2.9 25 58-82 35-59 (329)
448 PLN02165 adenylate isopentenyl 86.6 0.4 8.7E-06 39.1 1.7 20 65-84 42-61 (334)
449 PF06068 TIP49: TIP49 C-termin 86.6 0.38 8.2E-06 39.9 1.5 20 64-83 48-67 (398)
450 TIGR03689 pup_AAA proteasome A 86.6 0.27 6E-06 42.3 0.7 17 66-82 216-232 (512)
451 PF01935 DUF87: Domain of unkn 86.5 0.4 8.6E-06 36.3 1.5 18 66-83 23-40 (229)
452 KOG2170 ATPase of the AAA+ sup 86.5 0.94 2E-05 36.7 3.6 13 135-148 180-192 (344)
453 PRK00131 aroK shikimate kinase 86.4 0.34 7.5E-06 34.6 1.1 18 65-82 3-20 (175)
454 cd01122 GP4d_helicase GP4d_hel 86.4 0.19 4E-06 39.1 -0.3 45 39-83 3-47 (271)
455 COG1444 Predicted P-loop ATPas 86.4 6 0.00013 35.8 8.9 64 43-118 206-271 (758)
456 COG0210 UvrD Superfamily I DNA 86.3 2.7 5.8E-05 37.1 6.8 41 51-93 2-42 (655)
457 COG0593 DnaA ATPase involved i 86.3 1.4 3.1E-05 36.9 4.8 67 66-147 113-188 (408)
458 PRK00300 gmk guanylate kinase; 86.3 0.43 9.3E-06 35.4 1.6 18 65-82 4-21 (205)
459 PRK11823 DNA repair protein Ra 86.3 1.8 3.8E-05 36.7 5.4 18 66-83 80-97 (446)
460 cd00227 CPT Chloramphenicol (C 86.3 0.44 9.6E-06 34.7 1.6 19 65-83 1-19 (175)
461 TIGR02759 TraD_Ftype type IV c 86.2 0.44 9.6E-06 41.6 1.8 52 38-92 147-201 (566)
462 TIGR03743 SXT_TraD conjugative 86.2 0.59 1.3E-05 41.4 2.6 19 67-85 177-195 (634)
463 PRK14954 DNA polymerase III su 86.2 1.8 3.8E-05 38.3 5.5 17 68-84 40-56 (620)
464 PRK14974 cell division protein 86.1 1.8 3.9E-05 35.4 5.2 17 67-83 141-157 (336)
465 KOG1969 DNA replication checkp 86.0 2.6 5.6E-05 38.1 6.4 16 67-82 327-342 (877)
466 PRK05973 replicative DNA helic 86.0 0.51 1.1E-05 36.7 1.9 39 51-90 50-88 (237)
467 PRK06647 DNA polymerase III su 86.0 2.1 4.6E-05 37.4 5.9 18 68-85 40-57 (563)
468 cd01364 KISc_BimC_Eg5 Kinesin 85.9 0.64 1.4E-05 37.9 2.6 24 60-83 74-99 (352)
469 PRK07261 topology modulation p 85.9 0.41 8.9E-06 35.0 1.3 16 68-83 2-17 (171)
470 cd00071 GMPK Guanosine monopho 85.9 0.41 8.9E-06 33.7 1.2 14 69-82 2-15 (137)
471 PRK05342 clpX ATP-dependent pr 85.8 0.44 9.6E-06 39.9 1.6 18 66-83 108-125 (412)
472 cd00106 KISc Kinesin motor dom 85.8 0.99 2.2E-05 36.2 3.6 26 57-82 68-95 (328)
473 cd01124 KaiC KaiC is a circadi 85.7 0.66 1.4E-05 33.6 2.3 15 69-83 2-16 (187)
474 TIGR01650 PD_CobS cobaltochela 85.7 1 2.2E-05 36.7 3.5 24 59-82 57-80 (327)
475 cd01371 KISc_KIF3 Kinesin moto 85.5 0.77 1.7E-05 37.2 2.8 24 59-82 73-98 (333)
476 PRK08118 topology modulation p 85.5 0.45 9.7E-06 34.7 1.3 15 68-82 3-17 (167)
477 PF05729 NACHT: NACHT domain 85.5 0.49 1.1E-05 33.2 1.5 24 69-93 3-26 (166)
478 TIGR03238 dnd_assoc_3 dnd syst 85.4 0.88 1.9E-05 39.0 3.2 31 53-83 12-49 (504)
479 PF03796 DnaB_C: DnaB-like hel 85.4 1.2 2.6E-05 34.5 3.8 27 66-93 19-45 (259)
480 COG1126 GlnQ ABC-type polar am 85.3 0.51 1.1E-05 36.5 1.6 19 64-82 26-44 (240)
481 smart00129 KISc Kinesin motor, 85.3 1 2.2E-05 36.4 3.4 26 58-83 70-97 (335)
482 COG0324 MiaA tRNA delta(2)-iso 85.3 0.44 9.4E-06 38.5 1.3 15 69-83 6-20 (308)
483 PLN03130 ABC transporter C fam 85.1 0.3 6.5E-06 47.6 0.3 27 64-92 1263-1289(1622)
484 COG1223 Predicted ATPase (AAA+ 85.1 0.46 1E-05 37.9 1.3 17 66-82 151-167 (368)
485 TIGR00382 clpX endopeptidase C 85.1 0.49 1.1E-05 39.7 1.5 17 67-83 117-133 (413)
486 PF07724 AAA_2: AAA domain (Cd 85.1 0.45 9.7E-06 35.0 1.1 14 68-81 5-18 (171)
487 COG1136 SalX ABC-type antimicr 85.0 0.52 1.1E-05 36.4 1.5 27 64-92 29-55 (226)
488 PF00005 ABC_tran: ABC transpo 85.0 0.53 1.2E-05 32.4 1.5 18 65-82 10-27 (137)
489 TIGR00957 MRP_assoc_pro multi 84.9 0.43 9.4E-06 46.2 1.3 19 64-82 1310-1328(1522)
490 TIGR02653 Lon_rel_chp conserve 84.7 0.56 1.2E-05 41.5 1.7 85 38-143 180-277 (675)
491 TIGR03263 guanyl_kin guanylate 84.6 0.55 1.2E-05 34.0 1.4 17 66-82 1-17 (180)
492 PRK00091 miaA tRNA delta(2)-is 84.6 0.53 1.1E-05 38.0 1.4 17 67-83 5-21 (307)
493 cd01121 Sms Sms (bacterial rad 84.5 1.2 2.7E-05 36.8 3.6 19 66-84 82-100 (372)
494 TIGR02322 phosphon_PhnN phosph 84.4 0.55 1.2E-05 34.1 1.4 17 67-83 2-18 (179)
495 PF04665 Pox_A32: Poxvirus A32 84.4 0.53 1.1E-05 36.7 1.3 23 67-90 14-36 (241)
496 cd01366 KISc_C_terminal Kinesi 84.4 0.95 2E-05 36.5 2.9 26 58-83 68-95 (329)
497 TIGR00390 hslU ATP-dependent p 84.3 1 2.2E-05 38.1 3.0 17 67-83 48-64 (441)
498 TIGR00958 3a01208 Conjugate Tr 84.2 0.44 9.5E-06 42.5 0.9 19 64-82 505-523 (711)
499 PRK06620 hypothetical protein; 84.1 0.55 1.2E-05 35.7 1.3 16 67-82 45-60 (214)
500 TIGR03877 thermo_KaiC_1 KaiC d 84.1 0.9 2E-05 34.9 2.5 27 65-91 20-46 (237)
No 1
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.2e-36 Score=245.52 Aligned_cols=148 Identities=38% Similarity=0.547 Sum_probs=138.1
Q ss_pred cccCccccccCCcCcccCCCCCCCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchh
Q 031654 5 WAADSVFASENAAPASSSTNTLSSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
.+..+||.+++++.+.+.|.+.|.++.+|.+.. +.+..+++..||..|||+|+.+||.+..|+|+++||+||||||.|
T Consensus 48 ~~~~~nfd~~~~i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~a 127 (482)
T KOG0335|consen 48 ISTGINFDKYNDIPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAA 127 (482)
T ss_pred cchhhccCCccceeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHH
Confidence 567889999999999999999999999999765 888899999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhch-------------------------------------------------HHHHHHHhcCCcEEE
Q 031654 83 FCFPIINGIMREYYSA-------------------------------------------------RKELRELARWVDNLM 113 (155)
Q Consensus 83 yllp~l~~l~~~~~~~-------------------------------------------------~~~~~~l~~~~~IlI 113 (155)
||+|+++++....... ..|.+.+.++|||+|
T Consensus 128 FLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlv 207 (482)
T KOG0335|consen 128 FLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILV 207 (482)
T ss_pred HHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEE
Confidence 9999999998764422 578888889999999
Q ss_pred EChHHHHHHHHcCCCCcccccceEEEEcccccccc-cccccC
Q 031654 114 ATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLD-MALNQK 154 (155)
Q Consensus 114 ~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~-~gf~~~ 154 (155)
+|||||.++++++.+.++++ +||||||| |+|+| |||++|
T Consensus 208 aTpGrL~d~~e~g~i~l~~~-k~~vLDEA-DrMlD~mgF~p~ 247 (482)
T KOG0335|consen 208 ATPGRLKDLIERGKISLDNC-KFLVLDEA-DRMLDEMGFEPQ 247 (482)
T ss_pred ecCchhhhhhhcceeehhhC-cEEEecch-HHhhhhcccccc
Confidence 99999999999999999999 99999999 99999 999986
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-34 Score=240.41 Aligned_cols=120 Identities=38% Similarity=0.569 Sum_probs=108.9
Q ss_pred cccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHh-hhch-----------
Q 031654 33 FAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMRE-YYSA----------- 98 (155)
Q Consensus 33 f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~-~~~~----------- 98 (155)
|++++ +++..+|+..||+.|||||+++||.++.|+|+++.|.||||||++|++|++.++... ....
T Consensus 93 f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~ 172 (519)
T KOG0331|consen 93 FQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLA 172 (519)
T ss_pred hhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEc
Confidence 44444 567778889999999999999999999999999999999999999999999999863 1111
Q ss_pred ---------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccc
Q 031654 99 ---------------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQ 145 (155)
Q Consensus 99 ---------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ 145 (155)
..|.+.+.++++|+|+|||||.++++.+.+++++| +|+||||| |+
T Consensus 173 PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v-~ylVLDEA-Dr 250 (519)
T KOG0331|consen 173 PTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRV-TYLVLDEA-DR 250 (519)
T ss_pred CcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccce-eEEEeccH-Hh
Confidence 78999999999999999999999999999999999 99999999 99
Q ss_pred ccccccccC
Q 031654 146 TLDMALNQK 154 (155)
Q Consensus 146 ll~~gf~~~ 154 (155)
||||||++|
T Consensus 251 MldmGFe~q 259 (519)
T KOG0331|consen 251 MLDMGFEPQ 259 (519)
T ss_pred hhccccHHH
Confidence 999999986
No 3
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-34 Score=231.02 Aligned_cols=124 Identities=31% Similarity=0.450 Sum_probs=114.6
Q ss_pred CCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-------
Q 031654 28 SPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA------- 98 (155)
Q Consensus 28 ~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------- 98 (155)
+...+|.+|+ |++++++++.||..||+||+++||.++.|+||++.|+||||||.+|++|+++++..+....
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtP 137 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTP 137 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecC
Confidence 4456899998 9999999999999999999999999999999999999999999999999999998765443
Q ss_pred --------------------------------HHHHHHHhcCCcEEEEChHHHHHHHH-cCCCCcccccceEEEEccccc
Q 031654 99 --------------------------------RKELRELARWVDNLMATLRRLVNLLE-RGRVSLQMIIRYLALKEAADQ 145 (155)
Q Consensus 99 --------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~-~~~~~l~~l~~~lVlDEa~D~ 145 (155)
..|...+.+.|||+|+|||||.+++. .+.+++..+ +|||+||| |+
T Consensus 138 tRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~l-k~LVlDEA-Dr 215 (476)
T KOG0330|consen 138 TRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQL-KFLVLDEA-DR 215 (476)
T ss_pred cHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHh-HHHhhchH-Hh
Confidence 67778888899999999999999999 578999999 99999999 99
Q ss_pred cccccccc
Q 031654 146 TLDMALNQ 153 (155)
Q Consensus 146 ll~~gf~~ 153 (155)
+||+.|++
T Consensus 216 lLd~dF~~ 223 (476)
T KOG0330|consen 216 LLDMDFEE 223 (476)
T ss_pred hhhhhhHH
Confidence 99999975
No 4
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.5e-33 Score=237.15 Aligned_cols=132 Identities=31% Similarity=0.508 Sum_probs=118.3
Q ss_pred cCCCCCCCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhc-
Q 031654 21 SSTNTLSSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYS- 97 (155)
Q Consensus 21 ~~~~~~p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~- 97 (155)
+.|.++|.|+.+|++++ +.++++|+++||++|||+|.++||.+++|+|++++||||||||++|++|++.++......
T Consensus 120 ~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~ 199 (545)
T PTZ00110 120 IAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLR 199 (545)
T ss_pred ecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccccc
Confidence 46888999999999876 999999999999999999999999999999999999999999999999999887653210
Q ss_pred ------h-------------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCccccc
Q 031654 98 ------A-------------------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMII 134 (155)
Q Consensus 98 ------~-------------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~ 134 (155)
. ..+...+.++++|+|+||++|.+++.++..+++++
T Consensus 200 ~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v- 278 (545)
T PTZ00110 200 YGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRV- 278 (545)
T ss_pred CCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhC-
Confidence 0 45566677889999999999999999999999999
Q ss_pred ceEEEEcccccccccccccC
Q 031654 135 RYLALKEAADQTLDMALNQK 154 (155)
Q Consensus 135 ~~lVlDEa~D~ll~~gf~~~ 154 (155)
++|||||| |+|+++||+++
T Consensus 279 ~~lViDEA-d~mld~gf~~~ 297 (545)
T PTZ00110 279 TYLVLDEA-DRMLDMGFEPQ 297 (545)
T ss_pred cEEEeehH-HhhhhcchHHH
Confidence 99999999 99999999753
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-33 Score=234.67 Aligned_cols=122 Identities=37% Similarity=0.596 Sum_probs=111.9
Q ss_pred cccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHH--hhhc--h------
Q 031654 31 ARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMR--EYYS--A------ 98 (155)
Q Consensus 31 ~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~--~~~~--~------ 98 (155)
.+|++++ ++++++|.++||..|||||.++||.++.|+|++++|+||||||+||++|+++++.. .... .
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 6799987 99999999999999999999999999999999999999999999999999999873 2211 1
Q ss_pred --------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccc
Q 031654 99 --------------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 99 --------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~l 146 (155)
..|...+..++||||||||||++++.++.++++.+ +++|+||| |+|
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v-~~lVlDEA-Drm 186 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGV-ETLVLDEA-DRM 186 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhc-CEEEeccH-hhh
Confidence 56678888889999999999999999999999999 99999999 999
Q ss_pred cccccccC
Q 031654 147 LDMALNQK 154 (155)
Q Consensus 147 l~~gf~~~ 154 (155)
|||||.++
T Consensus 187 Ld~Gf~~~ 194 (513)
T COG0513 187 LDMGFIDD 194 (513)
T ss_pred hcCCCHHH
Confidence 99999875
No 6
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.98 E-value=1.8e-32 Score=232.31 Aligned_cols=136 Identities=26% Similarity=0.378 Sum_probs=120.6
Q ss_pred CcCcccCCCCCCCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHH
Q 031654 16 AAPASSSTNTLSSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMR 93 (155)
Q Consensus 16 ~~~~~~~~~~~p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~ 93 (155)
...+.+.|...|.|+.+|++++ +.++++|+++||+.|||+|.++||.++.|+|++++||||||||++|++|++.++..
T Consensus 106 ~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~ 185 (518)
T PLN00206 106 KLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCT 185 (518)
T ss_pred HCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHh
Confidence 4456778999999999999976 99999999999999999999999999999999999999999999999999988754
Q ss_pred hh-------hch---------------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCC
Q 031654 94 EY-------YSA---------------------------------------RKELRELARWVDNLMATLRRLVNLLERGR 127 (155)
Q Consensus 94 ~~-------~~~---------------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~ 127 (155)
.. ... ..+...+..+++|+|+||++|.+++.++.
T Consensus 186 ~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~ 265 (518)
T PLN00206 186 IRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHD 265 (518)
T ss_pred hccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCC
Confidence 21 000 34555666789999999999999999999
Q ss_pred CCcccccceEEEEccccccccccccc
Q 031654 128 VSLQMIIRYLALKEAADQTLDMALNQ 153 (155)
Q Consensus 128 ~~l~~l~~~lVlDEa~D~ll~~gf~~ 153 (155)
+.++++ ++||+||| |+|+++||++
T Consensus 266 ~~l~~v-~~lViDEa-d~ml~~gf~~ 289 (518)
T PLN00206 266 IELDNV-SVLVLDEV-DCMLERGFRD 289 (518)
T ss_pred ccchhe-eEEEeecH-HHHhhcchHH
Confidence 999999 99999999 9999999975
No 7
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=2.1e-33 Score=226.67 Aligned_cols=129 Identities=32% Similarity=0.460 Sum_probs=118.9
Q ss_pred CCCCCCCcccccCC---HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch--
Q 031654 24 NTLSSPAARFAYVP---QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-- 98 (155)
Q Consensus 24 ~~~p~~~~~f~~l~---~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-- 98 (155)
..+|+|..+|++.. +++++.+++.||.+|||||++|||.+++|.|++++|+||+|||++||+|-+-++..+....
T Consensus 212 rpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~q 291 (629)
T KOG0336|consen 212 RPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQ 291 (629)
T ss_pred ccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhc
Confidence 34789999999965 9999999999999999999999999999999999999999999999999887776543322
Q ss_pred ------------------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccce
Q 031654 99 ------------------------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRY 136 (155)
Q Consensus 99 ------------------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~ 136 (155)
..|+..++++.+|+|+||+||.++...+.+++..+ .|
T Consensus 292 r~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~si-TY 370 (629)
T KOG0336|consen 292 RNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASI-TY 370 (629)
T ss_pred cCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeee-EE
Confidence 78999999999999999999999999999999999 99
Q ss_pred EEEEcccccccccccccC
Q 031654 137 LALKEAADQTLDMALNQK 154 (155)
Q Consensus 137 lVlDEa~D~ll~~gf~~~ 154 (155)
|||||| |+||||||++|
T Consensus 371 lVlDEA-DrMLDMgFEpq 387 (629)
T KOG0336|consen 371 LVLDEA-DRMLDMGFEPQ 387 (629)
T ss_pred EEecch-hhhhcccccHH
Confidence 999999 99999999986
No 8
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.97 E-value=3.2e-32 Score=224.58 Aligned_cols=139 Identities=27% Similarity=0.347 Sum_probs=128.7
Q ss_pred cCCcCcccCCCCCCCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHH
Q 031654 14 ENAAPASSSTNTLSSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGI 91 (155)
Q Consensus 14 ~~~~~~~~~~~~~p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l 91 (155)
.+++++...|..+|.|+.+|++.+ .++++.+.+.||..|||||..+||..++.+|++.+|.||||||+||++|++..+
T Consensus 228 redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~I 307 (673)
T KOG0333|consen 228 REDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWI 307 (673)
T ss_pred ecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHH
Confidence 567788899999999999999976 999999999999999999999999999999999999999999999999999988
Q ss_pred HHhhhch------------------------------------------------HHHHHHHhcCCcEEEEChHHHHHHH
Q 031654 92 MREYYSA------------------------------------------------RKELRELARWVDNLMATLRRLVNLL 123 (155)
Q Consensus 92 ~~~~~~~------------------------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l 123 (155)
.+..+.. .+|--.++.+|+|+|+||+||.+.+
T Consensus 308 sslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~L 387 (673)
T KOG0333|consen 308 SSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSL 387 (673)
T ss_pred HcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHH
Confidence 7665322 5666688899999999999999999
Q ss_pred HcCCCCcccccceEEEEcccccccccccccC
Q 031654 124 ERGRVSLQMIIRYLALKEAADQTLDMALNQK 154 (155)
Q Consensus 124 ~~~~~~l~~l~~~lVlDEa~D~ll~~gf~~~ 154 (155)
.+..+-+++| .|||+||| |+|+||||++|
T Consensus 388 enr~lvl~qc-tyvvldea-drmiDmgfE~d 416 (673)
T KOG0333|consen 388 ENRYLVLNQC-TYVVLDEA-DRMIDMGFEPD 416 (673)
T ss_pred HHHHHHhccC-ceEeccch-hhhhcccccHH
Confidence 9999999999 99999999 99999999986
No 9
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6.1e-32 Score=223.42 Aligned_cols=124 Identities=31% Similarity=0.489 Sum_probs=112.6
Q ss_pred CCcccccCC--HHHHHhHH-hCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-------
Q 031654 29 PAARFAYVP--QHLRNKPR-TYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA------- 98 (155)
Q Consensus 29 ~~~~f~~l~--~~l~~~l~-~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------- 98 (155)
.-..|..|+ +.+...|+ .|++..||.+|+++||.+++|+|++|.|+||||||+||++|+++.|.......
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ 213 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPY 213 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCce
Confidence 345789988 99999986 56999999999999999999999999999999999999999999998765544
Q ss_pred ---------------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcC-CCCcccccceEE
Q 031654 99 ---------------------------------------RKELRELARWVDNLMATLRRLVNLLERG-RVSLQMIIRYLA 138 (155)
Q Consensus 99 ---------------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~-~~~l~~l~~~lV 138 (155)
+.+...++.|++|||+|||||+|++.+. .+.++++ +|||
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~L-RwlV 292 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRL-RWLV 292 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeee-eEEE
Confidence 6777889999999999999999999985 6899999 9999
Q ss_pred EEcccccccccccccC
Q 031654 139 LKEAADQTLDMALNQK 154 (155)
Q Consensus 139 lDEa~D~ll~~gf~~~ 154 (155)
+||| |+|+|+||+++
T Consensus 293 lDEa-DrlleLGfekd 307 (708)
T KOG0348|consen 293 LDEA-DRLLELGFEKD 307 (708)
T ss_pred ecch-hHHHhccchhh
Confidence 9999 99999999975
No 10
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.5e-32 Score=224.76 Aligned_cols=123 Identities=30% Similarity=0.464 Sum_probs=114.3
Q ss_pred CcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------
Q 031654 30 AARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA--------- 98 (155)
Q Consensus 30 ~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--------- 98 (155)
..+|.+++ ..+++++..+||..|||||..+||..+-|+|+++||-||||||.||++|+|+++...+...
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 45899988 8899999999999999999999999999999999999999999999999999998665544
Q ss_pred ---------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcC-CCCcccccceEEEEcccc
Q 031654 99 ---------------------------------RKELRELARWVDNLMATLRRLVNLLERG-RVSLQMIIRYLALKEAAD 144 (155)
Q Consensus 99 ---------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~-~~~l~~l~~~lVlDEa~D 144 (155)
+.|...|+.+|||||+|||||.+++++. .++++++ ..||+||| |
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsi-EVLvlDEA-D 337 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSI-EVLVLDEA-D 337 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccce-eEEEechH-H
Confidence 7888899999999999999999999885 7999999 99999999 9
Q ss_pred cccccccccC
Q 031654 145 QTLDMALNQK 154 (155)
Q Consensus 145 ~ll~~gf~~~ 154 (155)
+||+.||.+|
T Consensus 338 RMLeegFade 347 (691)
T KOG0338|consen 338 RMLEEGFADE 347 (691)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 11
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.7e-31 Score=216.77 Aligned_cols=121 Identities=28% Similarity=0.420 Sum_probs=104.0
Q ss_pred ccccCC----HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------
Q 031654 32 RFAYVP----QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA--------- 98 (155)
Q Consensus 32 ~f~~l~----~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--------- 98 (155)
+|++++ +++++++.++||+..||+|..+||.+++++||++.|+||||||+||++|+++.+.......
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 566665 9999999999999999999999999999999999999999999999999999995443222
Q ss_pred ------------------------------------HHHHH-HHhcCCcEEEEChHHHHHHHHcC--CCCcccccceEEE
Q 031654 99 ------------------------------------RKELR-ELARWVDNLMATLRRLVNLLERG--RVSLQMIIRYLAL 139 (155)
Q Consensus 99 ------------------------------------~~~~~-~l~~~~~IlI~TP~~l~~~l~~~--~~~l~~l~~~lVl 139 (155)
.+.+. -..++|+|+|||||||.+++.+. .+++..+ ++||+
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsL-e~LVL 163 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSL-EILVL 163 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhcccccc-ceEEe
Confidence 23333 33458999999999999999985 4667799 99999
Q ss_pred EcccccccccccccC
Q 031654 140 KEAADQTLDMALNQK 154 (155)
Q Consensus 140 DEa~D~ll~~gf~~~ 154 (155)
||| |+|+||||+.+
T Consensus 164 DEA-DrLldmgFe~~ 177 (567)
T KOG0345|consen 164 DEA-DRLLDMGFEAS 177 (567)
T ss_pred cch-HhHhcccHHHH
Confidence 999 99999999853
No 12
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.97 E-value=5.2e-32 Score=217.53 Aligned_cols=139 Identities=29% Similarity=0.442 Sum_probs=127.3
Q ss_pred cCCcCcccCCCCCCCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHH
Q 031654 14 ENAAPASSSTNTLSSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGI 91 (155)
Q Consensus 14 ~~~~~~~~~~~~~p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l 91 (155)
++...+.+.|+.+|.|+.+|.++. ..+++.|++.|+.+|||||.+.+|.+++|+|.+..|-||||||+.|.+|++-..
T Consensus 153 Rk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~ 232 (610)
T KOG0341|consen 153 RKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFA 232 (610)
T ss_pred HHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHH
Confidence 455677899999999999999965 999999999999999999999999999999999999999999999999988776
Q ss_pred HHhhhch-----------------------------------------------------HHHHHHHhcCCcEEEEChHH
Q 031654 92 MREYYSA-----------------------------------------------------RKELRELARWVDNLMATLRR 118 (155)
Q Consensus 92 ~~~~~~~-----------------------------------------------------~~~~~~l~~~~~IlI~TP~~ 118 (155)
......- .+|...++.+.||+|+||||
T Consensus 233 LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGR 312 (610)
T KOG0341|consen 233 LEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGR 312 (610)
T ss_pred HHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcch
Confidence 6543221 78888889999999999999
Q ss_pred HHHHHHcCCCCcccccceEEEEcccccccccccccC
Q 031654 119 LVNLLERGRVSLQMIIRYLALKEAADQTLDMALNQK 154 (155)
Q Consensus 119 l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf~~~ 154 (155)
|.+++..+.+++.-| +||++||| |+|+||||++|
T Consensus 313 L~DmL~KK~~sLd~C-RyL~lDEA-DRmiDmGFEdd 346 (610)
T KOG0341|consen 313 LMDMLAKKIMSLDAC-RYLTLDEA-DRMIDMGFEDD 346 (610)
T ss_pred HHHHHHHhhccHHHH-HHhhhhhH-HHHhhccchhh
Confidence 999999999999999 99999999 99999999986
No 13
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=1.6e-30 Score=215.35 Aligned_cols=121 Identities=27% Similarity=0.396 Sum_probs=107.6
Q ss_pred cccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhc---------h-
Q 031654 31 ARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYS---------A- 98 (155)
Q Consensus 31 ~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~---------~- 98 (155)
.+|++++ ++++++|.++||..|||+|++|||.+++|+|++++||||||||++|++|+++.+...... .
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~l 87 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRAL 87 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 5798887 999999999999999999999999999999999999999999999999999988653220 1
Q ss_pred ------------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcc
Q 031654 99 ------------------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEA 142 (155)
Q Consensus 99 ------------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa 142 (155)
..+...+..++||+|+||++|.+++.++.++++++ ++||+|||
T Consensus 88 il~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v-~~lViDEa 166 (423)
T PRK04837 88 IMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAI-QVVVLDEA 166 (423)
T ss_pred EECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccc-cEEEEecH
Confidence 33444556679999999999999999999999999 99999999
Q ss_pred ccccccccccc
Q 031654 143 ADQTLDMALNQ 153 (155)
Q Consensus 143 ~D~ll~~gf~~ 153 (155)
|+|+++||..
T Consensus 167 -d~l~~~~f~~ 176 (423)
T PRK04837 167 -DRMFDLGFIK 176 (423)
T ss_pred -HHHhhcccHH
Confidence 9999999864
No 14
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.96 E-value=4.1e-30 Score=208.71 Aligned_cols=122 Identities=25% Similarity=0.373 Sum_probs=110.1
Q ss_pred cccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------
Q 031654 31 ARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------- 98 (155)
Q Consensus 31 ~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------- 98 (155)
.+|++++ +++++++.++||++||.||+.|||.++.|+|+++.|.||||||+||++|+++.+.......
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 5899988 9999999999999999999999999999999999999999999999999999998766542
Q ss_pred -------------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCC-CCcccccceEEEE
Q 031654 99 -------------------------------------RKELRELARWVDNLMATLRRLVNLLERGR-VSLQMIIRYLALK 140 (155)
Q Consensus 99 -------------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~-~~l~~l~~~lVlD 140 (155)
......|...|||+|+||++++.++..+. ..+..+ ++||+|
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l-~~LVvD 177 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSL-SFLVVD 177 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhhe-eeEEec
Confidence 22224455679999999999999999987 788999 999999
Q ss_pred cccccccccccccC
Q 031654 141 EAADQTLDMALNQK 154 (155)
Q Consensus 141 Ea~D~ll~~gf~~~ 154 (155)
|| |-||..||+++
T Consensus 178 EA-DLllsfGYeed 190 (569)
T KOG0346|consen 178 EA-DLLLSFGYEED 190 (569)
T ss_pred hh-hhhhhcccHHH
Confidence 99 99999999975
No 15
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.96 E-value=6.5e-30 Score=223.40 Aligned_cols=134 Identities=27% Similarity=0.471 Sum_probs=123.0
Q ss_pred cccCCCCCCCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhh
Q 031654 19 ASSSTNTLSSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYY 96 (155)
Q Consensus 19 ~~~~~~~~p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~ 96 (155)
+.+.|..+|.|+.+|.+.+ +.++..++++||.+|||||.+|||+++.|+|||++|.||||||++|++|++.++..+..
T Consensus 353 i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~ 432 (997)
T KOG0334|consen 353 IKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP 432 (997)
T ss_pred eeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC
Confidence 7889999999999999998 99999999999999999999999999999999999999999999999999988775544
Q ss_pred ch--------------------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCC---CC
Q 031654 97 SA--------------------------------------------RKELRELARWVDNLMATLRRLVNLLERGR---VS 129 (155)
Q Consensus 97 ~~--------------------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~---~~ 129 (155)
.. .+|+..+++++.|+||||||+++++..+. .+
T Consensus 433 ~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtn 512 (997)
T KOG0334|consen 433 LEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTN 512 (997)
T ss_pred hhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccc
Confidence 33 78999999999999999999999987654 45
Q ss_pred cccccceEEEEcccccccccccccC
Q 031654 130 LQMIIRYLALKEAADQTLDMALNQK 154 (155)
Q Consensus 130 l~~l~~~lVlDEa~D~ll~~gf~~~ 154 (155)
+.++ .|||+||| |+|+|+||++|
T Consensus 513 lrR~-t~lv~dea-DrmfdmgfePq 535 (997)
T KOG0334|consen 513 LRRV-TYLVLDEA-DRMFDMGFEPQ 535 (997)
T ss_pred cccc-ceeeechh-hhhheeccCcc
Confidence 6777 79999999 99999999987
No 16
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.2e-30 Score=212.42 Aligned_cols=141 Identities=29% Similarity=0.435 Sum_probs=130.7
Q ss_pred cccCCcCcccCCCCCCCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHH
Q 031654 12 ASENAAPASSSTNTLSSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIIN 89 (155)
Q Consensus 12 ~~~~~~~~~~~~~~~p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~ 89 (155)
+.+..+++.+.|.++|.|+.+|+.++ +.|+.++++..|+.|||+|.+++|..+.|+||+..|.||||||.||+.|++.
T Consensus 204 ~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~ 283 (731)
T KOG0339|consen 204 DLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIV 283 (731)
T ss_pred hhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHH
Confidence 33556678899999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhch--------------------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHc
Q 031654 90 GIMREYYSA--------------------------------------------RKELRELARWVDNLMATLRRLVNLLER 125 (155)
Q Consensus 90 ~l~~~~~~~--------------------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~ 125 (155)
+++.+.... .+|...|..+|+||||||+||+++++.
T Consensus 284 himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm 363 (731)
T KOG0339|consen 284 HIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM 363 (731)
T ss_pred HhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh
Confidence 998654432 788999999999999999999999999
Q ss_pred CCCCcccccceEEEEcccccccccccccC
Q 031654 126 GRVSLQMIIRYLALKEAADQTLDMALNQK 154 (155)
Q Consensus 126 ~~~~l~~l~~~lVlDEa~D~ll~~gf~~~ 154 (155)
+..++.++ .||||||| |+|+++||++|
T Consensus 364 Katn~~rv-S~LV~DEa-drmfdmGfe~q 390 (731)
T KOG0339|consen 364 KATNLSRV-SYLVLDEA-DRMFDMGFEPQ 390 (731)
T ss_pred hcccceee-eEEEEech-hhhhccccHHH
Confidence 99999999 99999999 99999999976
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.96 E-value=3e-29 Score=209.66 Aligned_cols=121 Identities=26% Similarity=0.465 Sum_probs=107.6
Q ss_pred cccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------
Q 031654 31 ARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------- 98 (155)
Q Consensus 31 ~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------- 98 (155)
.+|++++ +.++++|.++||+.|||+|++|||.+++|+|++++||||||||++|++|+++++.......
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 4788877 9999999999999999999999999999999999999999999999999999886433111
Q ss_pred ------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccc
Q 031654 99 ------------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 99 ------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
..+...+..+++|+|+||+++.+++.++.+.++++ ++||+||| |+|++
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l-~~lViDEa-d~~l~ 161 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDAL-NTLVLDEA-DRMLD 161 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHC-CEEEEECH-HHHhC
Confidence 34445566789999999999999999999999999 99999999 99999
Q ss_pred ccccc
Q 031654 149 MALNQ 153 (155)
Q Consensus 149 ~gf~~ 153 (155)
+||..
T Consensus 162 ~g~~~ 166 (460)
T PRK11776 162 MGFQD 166 (460)
T ss_pred cCcHH
Confidence 99864
No 18
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.96 E-value=6.6e-30 Score=212.08 Aligned_cols=123 Identities=30% Similarity=0.443 Sum_probs=108.2
Q ss_pred CCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------
Q 031654 29 PAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------- 98 (155)
Q Consensus 29 ~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------- 98 (155)
.+..|++|| ...+++|++.+|..||.||+.+||..+.|+||+..|.||||||+||++|++++|....-..
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalI 146 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALI 146 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEE
Confidence 356899999 8999999999999999999999999999999999999999999999999999998765443
Q ss_pred ----------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcC-CCCcccccceEEEEccc
Q 031654 99 ----------------------------------RKELRELARWVDNLMATLRRLVNLLERG-RVSLQMIIRYLALKEAA 143 (155)
Q Consensus 99 ----------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~-~~~l~~l~~~lVlDEa~ 143 (155)
.......-++++|||||||||++++.++ .++.+++ .+||+|||
T Consensus 147 ISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~l-QmLvLDEA- 224 (758)
T KOG0343|consen 147 ISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNL-QMLVLDEA- 224 (758)
T ss_pred ecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcc-eEEEeccH-
Confidence 1111222246999999999999999986 6899999 99999999
Q ss_pred cccccccccc
Q 031654 144 DQTLDMALNQ 153 (155)
Q Consensus 144 D~ll~~gf~~ 153 (155)
|+||||||..
T Consensus 225 DR~LDMGFk~ 234 (758)
T KOG0343|consen 225 DRMLDMGFKK 234 (758)
T ss_pred HHHHHHhHHH
Confidence 9999999975
No 19
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.96 E-value=4.6e-29 Score=208.58 Aligned_cols=119 Identities=34% Similarity=0.512 Sum_probs=105.4
Q ss_pred ccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhc--------h---
Q 031654 32 RFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYS--------A--- 98 (155)
Q Consensus 32 ~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~--------~--- 98 (155)
+|++|+ ++++++|.++||..|||+|.++||.+++|+|++++||||||||++|++|+++.+...... .
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 688876 999999999999999999999999999999999999999999999999999998653211 1
Q ss_pred ----------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccc
Q 031654 99 ----------------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAAD 144 (155)
Q Consensus 99 ----------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D 144 (155)
..+...+..+++|+|+||++|++++..+.+.++++ ++||+||| |
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v-~~lViDEa-h 159 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQV-EILVLDEA-D 159 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccc-eEEEeecH-H
Confidence 23444556689999999999999999998999999 99999999 9
Q ss_pred cccccccc
Q 031654 145 QTLDMALN 152 (155)
Q Consensus 145 ~ll~~gf~ 152 (155)
+|+++||.
T Consensus 160 ~ll~~~~~ 167 (456)
T PRK10590 160 RMLDMGFI 167 (456)
T ss_pred HHhccccH
Confidence 99999985
No 20
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.96 E-value=2e-29 Score=206.59 Aligned_cols=122 Identities=27% Similarity=0.400 Sum_probs=108.0
Q ss_pred cccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------
Q 031654 31 ARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------- 98 (155)
Q Consensus 31 ~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------- 98 (155)
..|++++ +..+++++++||+.+|++|+.+||.++.|+|+++.|.||||||+||++|+++.+.......
T Consensus 82 ~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~ 161 (543)
T KOG0342|consen 82 FRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIIC 161 (543)
T ss_pred hHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEec
Confidence 4566666 9999999999999999999999999999999999999999999999999999998765433
Q ss_pred ----------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcC-CCCcccccceEEEEccc
Q 031654 99 ----------------------------------RKELRELARWVDNLMATLRRLVNLLERG-RVSLQMIIRYLALKEAA 143 (155)
Q Consensus 99 ----------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~-~~~l~~l~~~lVlDEa~ 143 (155)
......+..+|+|+|+|||||++++.+. .+...++ +++|+|||
T Consensus 162 PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~-k~lvlDEA- 239 (543)
T KOG0342|consen 162 PTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNL-KCLVLDEA- 239 (543)
T ss_pred ccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhcc-ceeEeecc-
Confidence 4445566669999999999999999985 4677888 99999999
Q ss_pred ccccccccccC
Q 031654 144 DQTLDMALNQK 154 (155)
Q Consensus 144 D~ll~~gf~~~ 154 (155)
|++||+||+++
T Consensus 240 DrlLd~GF~~d 250 (543)
T KOG0342|consen 240 DRLLDIGFEED 250 (543)
T ss_pred hhhhhcccHHH
Confidence 99999999875
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.96 E-value=1.1e-28 Score=204.78 Aligned_cols=120 Identities=26% Similarity=0.390 Sum_probs=105.6
Q ss_pred ccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhc------h-----
Q 031654 32 RFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYS------A----- 98 (155)
Q Consensus 32 ~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~------~----- 98 (155)
+|++|+ +.++++|.++||..||++|.++||.+++|+|++++||||||||++|++|+++++...... .
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 688877 999999999999999999999999999999999999999999999999999988642111 1
Q ss_pred --------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccc
Q 031654 99 --------------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 99 --------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~l 146 (155)
..+...+..+++|+|+||++|.+++..+.+++.++ ++||+||| |+|
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v-~~lViDEa-h~~ 159 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAV-ETLILDEA-DRM 159 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccC-CEEEEECH-HHH
Confidence 23334455678999999999999999999999999 99999999 999
Q ss_pred ccccccc
Q 031654 147 LDMALNQ 153 (155)
Q Consensus 147 l~~gf~~ 153 (155)
+++||.+
T Consensus 160 l~~~~~~ 166 (434)
T PRK11192 160 LDMGFAQ 166 (434)
T ss_pred hCCCcHH
Confidence 9999864
No 22
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.6e-29 Score=200.76 Aligned_cols=123 Identities=29% Similarity=0.454 Sum_probs=111.4
Q ss_pred CcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------
Q 031654 30 AARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA--------- 98 (155)
Q Consensus 30 ~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--------- 98 (155)
...|+.|+ +|+.+.|+.+|++.|||+|..|||.++.|+|++.+|.||||||.+|.+|+++++.......
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTr 85 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTR 85 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchH
Confidence 46799999 9999999999999999999999999999999999999999999999999999998766544
Q ss_pred ------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcC----CCCcccccceEEEEcccc
Q 031654 99 ------------------------------RKELRELARWVDNLMATLRRLVNLLERG----RVSLQMIIRYLALKEAAD 144 (155)
Q Consensus 99 ------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~----~~~l~~l~~~lVlDEa~D 144 (155)
-.|...|..+||+||+||||+.+++..+ ...+.++ +|+|+||| |
T Consensus 86 ELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rl-kflVlDEA-D 163 (442)
T KOG0340|consen 86 ELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRL-KFLVLDEA-D 163 (442)
T ss_pred HHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhce-eeEEecch-h
Confidence 4566777789999999999999999876 3568999 99999999 9
Q ss_pred cccccccccC
Q 031654 145 QTLDMALNQK 154 (155)
Q Consensus 145 ~ll~~gf~~~ 154 (155)
+|++.+|.++
T Consensus 164 rvL~~~f~d~ 173 (442)
T KOG0340|consen 164 RVLAGCFPDI 173 (442)
T ss_pred hhhccchhhH
Confidence 9999998753
No 23
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=1.9e-28 Score=209.80 Aligned_cols=121 Identities=26% Similarity=0.362 Sum_probs=105.3
Q ss_pred cccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhh---------ch-
Q 031654 31 ARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYY---------SA- 98 (155)
Q Consensus 31 ~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~---------~~- 98 (155)
.+|++|+ +.++++|.++||+.|||+|+++||.++.|+|++++||||||||++|++|+++++..... ..
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4688877 99999999999999999999999999999999999999999999999999998864321 11
Q ss_pred ------------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcC-CCCcccccceEEEEc
Q 031654 99 ------------------------------------RKELRELARWVDNLMATLRRLVNLLERG-RVSLQMIIRYLALKE 141 (155)
Q Consensus 99 ------------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~-~~~l~~l~~~lVlDE 141 (155)
..+...+..+++|||+||++|++++.++ .+.+..+ ++|||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v-~~lViDE 167 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHAC-EICVLDE 167 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhhe-eeeEecC
Confidence 3344456667999999999999999875 5789999 9999999
Q ss_pred cccccccccccc
Q 031654 142 AADQTLDMALNQ 153 (155)
Q Consensus 142 a~D~ll~~gf~~ 153 (155)
| |+|+++||.+
T Consensus 168 A-h~lld~gf~~ 178 (572)
T PRK04537 168 A-DRMFDLGFIK 178 (572)
T ss_pred H-HHHhhcchHH
Confidence 9 9999999864
No 24
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.95 E-value=3.3e-28 Score=210.00 Aligned_cols=121 Identities=31% Similarity=0.486 Sum_probs=107.2
Q ss_pred cccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------
Q 031654 31 ARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------- 98 (155)
Q Consensus 31 ~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------- 98 (155)
.+|.+|+ +.++++|.++||+.|||+|+++||.++.|+|++++||||||||++|++|+++.+.......
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTre 85 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRE 85 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHH
Confidence 4688876 9999999999999999999999999999999999999999999999999999886542211
Q ss_pred ------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccc
Q 031654 99 ------------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 99 ------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
..+.+.+..+++|||+||+++.+++.++.++++++ ++|||||| |.|++
T Consensus 86 La~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l-~~lVlDEA-d~ml~ 163 (629)
T PRK11634 86 LAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKL-SGLVLDEA-DEMLR 163 (629)
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhc-eEEEeccH-HHHhh
Confidence 33445556689999999999999999999999999 99999999 99999
Q ss_pred ccccc
Q 031654 149 MALNQ 153 (155)
Q Consensus 149 ~gf~~ 153 (155)
+||.+
T Consensus 164 ~gf~~ 168 (629)
T PRK11634 164 MGFIE 168 (629)
T ss_pred cccHH
Confidence 99864
No 25
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.95 E-value=3.1e-28 Score=202.03 Aligned_cols=123 Identities=24% Similarity=0.375 Sum_probs=107.6
Q ss_pred CCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcC-CcEEEEccCCCCcchhhhhHHHHHHHHhhhch-----
Q 031654 27 SSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAG-RDLMACAQTGSRKTTPFCFPIINGIMREYYSA----- 98 (155)
Q Consensus 27 p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g-~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----- 98 (155)
+..+..|.+|+ .+++++|..+||.+||+||+.++|.+..| .||+..|.||||||+||-+|+++++.......
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 34455677766 99999999999999999999999999999 89999999999999999999999665433222
Q ss_pred -----------------------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCC---
Q 031654 99 -----------------------------------------------RKELRELARWVDNLMATLRRLVNLLERGRV--- 128 (155)
Q Consensus 99 -----------------------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~--- 128 (155)
..|.+.++..|||||+|||||+.++..+..
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 678888888999999999999999998754
Q ss_pred CcccccceEEEEccccccccccc
Q 031654 129 SLQMIIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 129 ~l~~l~~~lVlDEa~D~ll~~gf 151 (155)
+++++ ++||+||| |+|++.|+
T Consensus 337 ~~k~v-kcLVlDEa-DRmvekgh 357 (731)
T KOG0347|consen 337 NFKKV-KCLVLDEA-DRMVEKGH 357 (731)
T ss_pred hhhhc-eEEEEccH-HHHhhhcc
Confidence 68889 99999999 99999985
No 26
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=5.1e-28 Score=187.90 Aligned_cols=129 Identities=21% Similarity=0.384 Sum_probs=115.7
Q ss_pred CCCCCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---
Q 031654 24 NTLSSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA--- 98 (155)
Q Consensus 24 ~~~p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--- 98 (155)
...-.++.+|++++ +++++.+.+.||++|+.||+.|||++++|+||+++|++|+|||.+|.+.+++.+.-.....
T Consensus 20 s~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~l 99 (400)
T KOG0328|consen 20 SEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQAL 99 (400)
T ss_pred ccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEE
Confidence 33445677999999 9999999999999999999999999999999999999999999999999988775443321
Q ss_pred ------------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcc
Q 031654 99 ------------------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEA 142 (155)
Q Consensus 99 ------------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa 142 (155)
.+.++.+..|+|++.|||||+.++++++.+....+ +++|+|||
T Consensus 100 ilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~v-kmlVLDEa 178 (400)
T KOG0328|consen 100 ILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAV-KMLVLDEA 178 (400)
T ss_pred EecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccce-eEEEeccH
Confidence 56677777899999999999999999999999999 99999999
Q ss_pred cccccccccccC
Q 031654 143 ADQTLDMALNQK 154 (155)
Q Consensus 143 ~D~ll~~gf~~~ 154 (155)
|.||+.||.+|
T Consensus 179 -DemL~kgfk~Q 189 (400)
T KOG0328|consen 179 -DEMLNKGFKEQ 189 (400)
T ss_pred -HHHHHhhHHHH
Confidence 99999999876
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=6.9e-27 Score=196.26 Aligned_cols=122 Identities=34% Similarity=0.502 Sum_probs=105.3
Q ss_pred CcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhc---------h
Q 031654 30 AARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYS---------A 98 (155)
Q Consensus 30 ~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~---------~ 98 (155)
..+|.+++ +.++++|.++||..||++|+++|+.+++|+|++++||||||||++|++|+++.+...... .
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 45677766 999999999999999999999999999999999999999999999999999998764310 1
Q ss_pred -------------------------------------HHHHHHHh-cCCcEEEEChHHHHHHHHcCCCCcccccceEEEE
Q 031654 99 -------------------------------------RKELRELA-RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALK 140 (155)
Q Consensus 99 -------------------------------------~~~~~~l~-~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlD 140 (155)
..+.+.+. ..++|+|+||++|++++.++...++++ ++||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l-~~lViD 244 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMV-EVMVLD 244 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccC-ceEEec
Confidence 23333443 468999999999999999888999999 999999
Q ss_pred ccccccccccccc
Q 031654 141 EAADQTLDMALNQ 153 (155)
Q Consensus 141 Ea~D~ll~~gf~~ 153 (155)
|| |+++++||..
T Consensus 245 Ea-h~l~~~~~~~ 256 (475)
T PRK01297 245 EA-DRMLDMGFIP 256 (475)
T ss_pred hH-HHHHhcccHH
Confidence 99 9999998853
No 28
>PTZ00424 helicase 45; Provisional
Probab=99.93 E-value=6.8e-26 Score=185.76 Aligned_cols=122 Identities=20% Similarity=0.376 Sum_probs=105.8
Q ss_pred CCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------
Q 031654 29 PAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------- 98 (155)
Q Consensus 29 ~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------- 98 (155)
...+|++++ +.+.++|.++||..|+|+|.++|+.+++|+|++++||||||||++|++|++..+.......
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt 105 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPT 105 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCC
Confidence 457899987 9999999999999999999999999999999999999999999999999998875322111
Q ss_pred -------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccc
Q 031654 99 -------------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 99 -------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll 147 (155)
..+...+..+++|+|+||+++.+++.++.+.++++ +++|+||| |+++
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i-~lvViDEa-h~~~ 183 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDL-KLFILDEA-DEML 183 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccc-cEEEEecH-HHHH
Confidence 23334455678999999999999999988899999 99999999 9999
Q ss_pred ccccc
Q 031654 148 DMALN 152 (155)
Q Consensus 148 ~~gf~ 152 (155)
+.||.
T Consensus 184 ~~~~~ 188 (401)
T PTZ00424 184 SRGFK 188 (401)
T ss_pred hcchH
Confidence 98875
No 29
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=1.9e-26 Score=186.57 Aligned_cols=123 Identities=25% Similarity=0.436 Sum_probs=111.6
Q ss_pred CcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------
Q 031654 30 AARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA--------- 98 (155)
Q Consensus 30 ~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--------- 98 (155)
..+|+.++ ..+++++.+.||..|||||+.+||.++.|+|++..|.||||||.||++|+++++.......
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 46899988 9999999999999999999999999999999999999999999999999999998766211
Q ss_pred -------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccc
Q 031654 99 -------------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 99 -------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll 147 (155)
.+|...+..++|||++||+++..+..+-.+.++.+ +|+|+||| |+|+
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sv-eyVVfdEa-drlf 177 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSV-EYVVFDEA-DRLF 177 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccce-eeeeehhh-hHHH
Confidence 57777788899999999999988877777899999 99999999 9999
Q ss_pred ccccccC
Q 031654 148 DMALNQK 154 (155)
Q Consensus 148 ~~gf~~~ 154 (155)
+|||.+|
T Consensus 178 emgfqeq 184 (529)
T KOG0337|consen 178 EMGFQEQ 184 (529)
T ss_pred hhhhHHH
Confidence 9999875
No 30
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=4.2e-27 Score=185.33 Aligned_cols=121 Identities=26% Similarity=0.432 Sum_probs=108.8
Q ss_pred cccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------
Q 031654 31 ARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------- 98 (155)
Q Consensus 31 ~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------- 98 (155)
..|+++. .+++..+.+.||++|+|+|.++||..+.|+|+++.|..|+|||.||++|+++++.......
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtre 164 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRE 164 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecch
Confidence 4588876 9999999999999999999999999999999999999999999999999999987554333
Q ss_pred -----------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccc
Q 031654 99 -----------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 99 -----------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
.+.+-.+.+.+|++|+||||++++..++--.++++ ..+|+||| |+||+.
T Consensus 165 lALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c-~~lV~DEA-DKlLs~ 242 (459)
T KOG0326|consen 165 LALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDC-VILVMDEA-DKLLSV 242 (459)
T ss_pred hhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhc-eEEEechh-hhhhch
Confidence 55556666789999999999999999999999999 99999999 999999
Q ss_pred cccc
Q 031654 150 ALNQ 153 (155)
Q Consensus 150 gf~~ 153 (155)
.|.+
T Consensus 243 ~F~~ 246 (459)
T KOG0326|consen 243 DFQP 246 (459)
T ss_pred hhhh
Confidence 8854
No 31
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=1.3e-25 Score=187.19 Aligned_cols=141 Identities=26% Similarity=0.404 Sum_probs=120.6
Q ss_pred cccCCcCcccCCCCCCCCCcccccCC------HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhh
Q 031654 12 ASENAAPASSSTNTLSSPAARFAYVP------QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCF 85 (155)
Q Consensus 12 ~~~~~~~~~~~~~~~p~~~~~f~~l~------~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yll 85 (155)
..+++..+.+.|.+.|.++.+|.+|- +.+++++...+|..|+|+|.+|||.++.++|+++|||||||||++|++
T Consensus 113 ~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~ 192 (593)
T KOG0344|consen 113 GIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNL 192 (593)
T ss_pred cchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhh
Confidence 34556677899999999999999965 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhch-----------------------------------------------HHHHHHHhcCCcEEEEChHH
Q 031654 86 PIINGIMREYYSA-----------------------------------------------RKELRELARWVDNLMATLRR 118 (155)
Q Consensus 86 p~l~~l~~~~~~~-----------------------------------------------~~~~~~l~~~~~IlI~TP~~ 118 (155)
|+++++....... ..+.......++|+|+||.|
T Consensus 193 Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~r 272 (593)
T KOG0344|consen 193 PILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMR 272 (593)
T ss_pred HHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHH
Confidence 9999998766311 11111122347999999999
Q ss_pred HHHHHHcCC--CCcccccceEEEEccccccccc-ccccC
Q 031654 119 LVNLLERGR--VSLQMIIRYLALKEAADQTLDM-ALNQK 154 (155)
Q Consensus 119 l~~~l~~~~--~~l~~l~~~lVlDEa~D~ll~~-gf~~~ 154 (155)
+..++..+. ++++.| .++|+||| |++++. +|.+|
T Consensus 273 i~~~~~~~~~~idl~~V-~~lV~dEa-D~lfe~~~f~~Q 309 (593)
T KOG0344|consen 273 IVGLLGLGKLNIDLSKV-EWLVVDEA-DLLFEPEFFVEQ 309 (593)
T ss_pred HHHHhcCCCccchhhee-eeEeechH-HhhhChhhHHHH
Confidence 999999876 899999 99999999 999998 77654
No 32
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=3.5e-25 Score=182.25 Aligned_cols=113 Identities=30% Similarity=0.396 Sum_probs=95.7
Q ss_pred HHHHhHHhCCCCCCCHHHHHHHHHHh---------cCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-----------
Q 031654 39 HLRNKPRTYKYVKPTPVQRHATSILV---------AGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------- 98 (155)
Q Consensus 39 ~l~~~l~~~g~~~pt~iQ~~~i~~~l---------~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------- 98 (155)
.+.+++..+++++..|+|..++|.++ .++||.|.||||||||+||.+||++.+.......
T Consensus 147 ~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~ 226 (620)
T KOG0350|consen 147 TIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRE 226 (620)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHH
Confidence 34567999999999999999999884 3689999999999999999999999887664333
Q ss_pred -----------------------------HHHHHHHhc-C----CcEEEEChHHHHHHHHc-CCCCcccccceEEEEccc
Q 031654 99 -----------------------------RKELRELAR-W----VDNLMATLRRLVNLLER-GRVSLQMIIRYLALKEAA 143 (155)
Q Consensus 99 -----------------------------~~~~~~l~~-~----~~IlI~TP~~l~~~l~~-~~~~l~~l~~~lVlDEa~ 143 (155)
.+..+.|.+ . .||+|+|||||++++++ ..++|+++ +|+|+|||
T Consensus 227 L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~L-rfLVIDEA- 304 (620)
T KOG0350|consen 227 LALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHL-RFLVIDEA- 304 (620)
T ss_pred HHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhc-eEEEechH-
Confidence 444455544 3 39999999999999995 67999999 99999999
Q ss_pred cccccccccc
Q 031654 144 DQTLDMALNQ 153 (155)
Q Consensus 144 D~ll~~gf~~ 153 (155)
|+|++..|.+
T Consensus 305 DRll~qsfQ~ 314 (620)
T KOG0350|consen 305 DRLLDQSFQE 314 (620)
T ss_pred HHHHHHHHHH
Confidence 9999998853
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.91 E-value=5.7e-24 Score=186.70 Aligned_cols=112 Identities=15% Similarity=0.200 Sum_probs=92.9
Q ss_pred CCHHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-----------------
Q 031654 36 VPQHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------------- 98 (155)
Q Consensus 36 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------------- 98 (155)
+++++.++|+++||++||++|+++||.+++|+|++++||||||||+||++|+++.+.......
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~ 100 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRA 100 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHH
Confidence 459999999999999999999999999999999999999999999999999999987543211
Q ss_pred -------------------HHHHHHHhcCCcEEEEChHHHHHHHHcC----CCCcccccceEEEEccccccccc
Q 031654 99 -------------------RKELRELARWVDNLMATLRRLVNLLERG----RVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 99 -------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~----~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
..+...+..+++|+|+||++|...+... ...++++ ++|||||| |.|.+.
T Consensus 101 l~~l~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l-~~vViDEa-h~~~g~ 172 (742)
T TIGR03817 101 VRELTLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRL-RYVVIDEC-HSYRGV 172 (742)
T ss_pred HHHhccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcC-CEEEEeCh-hhccCc
Confidence 3344455667999999999987543221 1348899 99999999 999763
No 34
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.90 E-value=3.8e-23 Score=155.00 Aligned_cols=118 Identities=38% Similarity=0.580 Sum_probs=101.4
Q ss_pred cccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHh--hhch----------
Q 031654 33 FAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMRE--YYSA---------- 98 (155)
Q Consensus 33 f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~--~~~~---------- 98 (155)
|++++ +.+.+.+.++|++.|++.|+++++.+++|+|+++++|||+|||++|++|+++.+... ....
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 56666 899999999999999999999999999999999999999999999999999998876 1111
Q ss_pred -----------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccc
Q 031654 99 -----------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 99 -----------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
......+.++++|+|+||+++.+++.++...+.++ +++|+||+ |.+.+.
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l-~~lIvDE~-h~~~~~ 158 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKV-KYLVLDEA-DRMLDM 158 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhC-CEEEEeCh-HHhhcc
Confidence 12223334478999999999999999888899999 99999999 999887
Q ss_pred ccc
Q 031654 150 ALN 152 (155)
Q Consensus 150 gf~ 152 (155)
+|.
T Consensus 159 ~~~ 161 (203)
T cd00268 159 GFE 161 (203)
T ss_pred ChH
Confidence 764
No 35
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=4.2e-24 Score=171.08 Aligned_cols=128 Identities=25% Similarity=0.369 Sum_probs=109.1
Q ss_pred CCCCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----
Q 031654 25 TLSSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---- 98 (155)
Q Consensus 25 ~~p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---- 98 (155)
+.-+-+.+|++++ ++|+..+...||++|+.||++||+.+..|.|+.+++++|||||.+|++++++.+.......
T Consensus 20 n~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qali 99 (397)
T KOG0327|consen 20 NWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALI 99 (397)
T ss_pred cHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHH
Confidence 3344567999988 9999999999999999999999999999999999999999999999999999853222111
Q ss_pred -----------------------------------H-HHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcc
Q 031654 99 -----------------------------------R-KELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEA 142 (155)
Q Consensus 99 -----------------------------------~-~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa 142 (155)
. +..+.....+||+|+||||+.++++.+.+....+ +++|+|||
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~i-KmfvlDEa 178 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGI-KMFVLDEA 178 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccce-eEEeecch
Confidence 1 2222333468999999999999999998889999 99999999
Q ss_pred cccccccccccC
Q 031654 143 ADQTLDMALNQK 154 (155)
Q Consensus 143 ~D~ll~~gf~~~ 154 (155)
|.|+..||.+|
T Consensus 179 -DEmLs~gfkdq 189 (397)
T KOG0327|consen 179 -DEMLSRGFKDQ 189 (397)
T ss_pred -HhhhccchHHH
Confidence 99999999875
No 36
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=3.2e-23 Score=159.52 Aligned_cols=123 Identities=20% Similarity=0.266 Sum_probs=106.9
Q ss_pred CCCCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----
Q 031654 25 TLSSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---- 98 (155)
Q Consensus 25 ~~p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---- 98 (155)
...-+...|.++- |+++.++-..||++|+.+|..+||...-|-|++++|.+|.|||..|.+..++++.......
T Consensus 36 yv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlv 115 (387)
T KOG0329|consen 36 YVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLV 115 (387)
T ss_pred EEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEE
Confidence 3333445677765 9999999999999999999999999999999999999999999999999998886543322
Q ss_pred ------------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcc
Q 031654 99 ------------------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEA 142 (155)
Q Consensus 99 ------------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa 142 (155)
+.....+.+.|||+|+||||++.+.+++.++++++ +++|+||+
T Consensus 116 mchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~v-khFvlDEc 194 (387)
T KOG0329|consen 116 MCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNV-KHFVLDEC 194 (387)
T ss_pred EeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhc-ceeehhhH
Confidence 45556677789999999999999999999999999 99999999
Q ss_pred ccccccc
Q 031654 143 ADQTLDM 149 (155)
Q Consensus 143 ~D~ll~~ 149 (155)
|+||+.
T Consensus 195 -dkmle~ 200 (387)
T KOG0329|consen 195 -DKMLEQ 200 (387)
T ss_pred -HHHHHH
Confidence 999864
No 37
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.87 E-value=4.7e-23 Score=174.06 Aligned_cols=125 Identities=22% Similarity=0.331 Sum_probs=106.9
Q ss_pred CCCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-----
Q 031654 26 LSSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----- 98 (155)
Q Consensus 26 ~p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----- 98 (155)
.+.-...|++|- ..++..|++.+|..||+||..|||.++.+-|++|+|..|+|||+.|.+.+++.+..+....
T Consensus 20 ~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv 99 (980)
T KOG4284|consen 20 QSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIV 99 (980)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEE
Confidence 455566899987 9999999999999999999999999999999999999999999999998888776544322
Q ss_pred -----------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccc
Q 031654 99 -----------------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAA 143 (155)
Q Consensus 99 -----------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~ 143 (155)
......+ +.++|+||||||+..++..+.++.+.+ +++|||||
T Consensus 100 ~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-k~~rIvIGtPGRi~qL~el~~~n~s~v-rlfVLDEA- 176 (980)
T KOG4284|consen 100 TPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-KQTRIVIGTPGRIAQLVELGAMNMSHV-RLFVLDEA- 176 (980)
T ss_pred ecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-hhceEEecCchHHHHHHHhcCCCccce-eEEEeccH-
Confidence 2233333 358999999999999999999999999 99999999
Q ss_pred cccccc-cccc
Q 031654 144 DQTLDM-ALNQ 153 (155)
Q Consensus 144 D~ll~~-gf~~ 153 (155)
|+|++. .|.+
T Consensus 177 DkL~~t~sfq~ 187 (980)
T KOG4284|consen 177 DKLMDTESFQD 187 (980)
T ss_pred HhhhchhhHHH
Confidence 999995 4654
No 38
>PRK02362 ski2-like helicase; Provisional
Probab=99.86 E-value=7.9e-22 Score=173.37 Aligned_cols=118 Identities=20% Similarity=0.196 Sum_probs=96.4
Q ss_pred ccccCC--HHHHHhHHhCCCCCCCHHHHHHHHH-HhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------H
Q 031654 32 RFAYVP--QHLRNKPRTYKYVKPTPVQRHATSI-LVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------R 99 (155)
Q Consensus 32 ~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~-~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------~ 99 (155)
.|++++ +.+++++++.||.+|+|+|.+|++. ++.|+|++++||||||||++|.+|++..+....... .
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~ 81 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALAS 81 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHH
Confidence 466654 9999999999999999999999998 789999999999999999999999999886433222 1
Q ss_pred HH---HHHH--------------------hcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccccc
Q 031654 100 KE---LREL--------------------ARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 100 ~~---~~~l--------------------~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf 151 (155)
+. ...+ ...++|+|+||+++..+++++...++++ +++|+||+ |.|.+.++
T Consensus 82 q~~~~~~~~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v-~lvViDE~-H~l~d~~r 154 (737)
T PRK02362 82 EKFEEFERFEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDI-TCVVVDEV-HLIDSANR 154 (737)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhc-CEEEEECc-cccCCCcc
Confidence 11 1111 1247999999999999988766668899 99999999 99887655
No 39
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.86 E-value=8.9e-22 Score=172.09 Aligned_cols=115 Identities=23% Similarity=0.285 Sum_probs=99.2
Q ss_pred ccccCCHHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhh--hc---h--------
Q 031654 32 RFAYVPQHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREY--YS---A-------- 98 (155)
Q Consensus 32 ~f~~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~--~~---~-------- 98 (155)
.|+-|++.+++.+++. |..|||.|.+|||.+.+|+|++++||||||||+|..+|+++.+.... .. .
T Consensus 4 ~~~~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPL 82 (814)
T COG1201 4 IFNILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPL 82 (814)
T ss_pred hhhhcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcH
Confidence 4677889999999987 99999999999999999999999999999999999999999998873 11 1
Q ss_pred -------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCC--CCcccccceEEEEccccc
Q 031654 99 -------------------------------RKELRELARWVDNLMATLRRLVNLLERGR--VSLQMIIRYLALKEAADQ 145 (155)
Q Consensus 99 -------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~--~~l~~l~~~lVlDEa~D~ 145 (155)
.+..+.+.+.|||||+||+.|.-++.... -.+.++ +++|+||+ |.
T Consensus 83 kALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~v-r~VIVDEi-He 160 (814)
T COG1201 83 KALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDV-RYVIVDEI-HA 160 (814)
T ss_pred HHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCC-cEEEeehh-hh
Confidence 34445556789999999999988887754 368999 99999999 99
Q ss_pred cccc
Q 031654 146 TLDM 149 (155)
Q Consensus 146 ll~~ 149 (155)
|.+.
T Consensus 161 l~~s 164 (814)
T COG1201 161 LAES 164 (814)
T ss_pred hhcc
Confidence 8754
No 40
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.1e-22 Score=162.94 Aligned_cols=125 Identities=22% Similarity=0.337 Sum_probs=106.1
Q ss_pred CCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcC--CcEEEEccCCCCcchhhhhHHHHHHHHhhhch-----
Q 031654 28 SPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAG--RDLMACAQTGSRKTTPFCFPIINGIMREYYSA----- 98 (155)
Q Consensus 28 ~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g--~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----- 98 (155)
..+.+|++|. |++++.|..|+|.+|+.||..|+|.++.. +|+++++++|||||.||.|.+|+++.......
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCL 166 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICL 166 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceee
Confidence 5678999998 99999999999999999999999999987 89999999999999999999999886543322
Q ss_pred ------HHH-------------------------HHHHhcCCcEEEEChHHHHHHHHc-CCCCcccccceEEEEcccccc
Q 031654 99 ------RKE-------------------------LRELARWVDNLMATLRRLVNLLER-GRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 99 ------~~~-------------------------~~~l~~~~~IlI~TP~~l~~~l~~-~~~~l~~l~~~lVlDEa~D~l 146 (155)
..| .+.-.-..+|+|+|||.+.+++.. +.++++.+ +.+|+||| |.|
T Consensus 167 aPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~ki-kvfVlDEA-D~M 244 (477)
T KOG0332|consen 167 APTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKI-KVFVLDEA-DVM 244 (477)
T ss_pred CchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhc-eEEEecch-hhh
Confidence 000 000001359999999999999988 89999999 99999999 999
Q ss_pred ccc-ccccC
Q 031654 147 LDM-ALNQK 154 (155)
Q Consensus 147 l~~-gf~~~ 154 (155)
++. ||.++
T Consensus 245 i~tqG~~D~ 253 (477)
T KOG0332|consen 245 IDTQGFQDQ 253 (477)
T ss_pred hhccccccc
Confidence 977 89876
No 41
>PRK00254 ski2-like helicase; Provisional
Probab=99.85 E-value=1.4e-21 Score=171.42 Aligned_cols=118 Identities=19% Similarity=0.212 Sum_probs=97.3
Q ss_pred ccccCC--HHHHHhHHhCCCCCCCHHHHHHHHH-HhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------
Q 031654 32 RFAYVP--QHLRNKPRTYKYVKPTPVQRHATSI-LVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------- 98 (155)
Q Consensus 32 ~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~-~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------- 98 (155)
+|++++ +.+.+.+++.||+.|+|+|.++++. +++|+|++++||||||||++|.+|+++.+.......
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa 81 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALA 81 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHH
Confidence 466665 9999999999999999999999986 789999999999999999999999999886533222
Q ss_pred HHHHHH-----------------------HhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccccc
Q 031654 99 RKELRE-----------------------LARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 99 ~~~~~~-----------------------l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf 151 (155)
.++... ....++|+|+||+++..+++.+...++++ +++|+||+ |.+.+.++
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l-~lvViDE~-H~l~~~~r 155 (720)
T PRK00254 82 EEKYREFKDWEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDV-KLVVADEI-HLIGSYDR 155 (720)
T ss_pred HHHHHHHHHHhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcC-CEEEEcCc-CccCCccc
Confidence 111111 11357999999999999988777778999 99999999 99987654
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.85 E-value=2.9e-21 Score=172.32 Aligned_cols=116 Identities=21% Similarity=0.286 Sum_probs=92.4
Q ss_pred ccccCCHHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhc--------h-----
Q 031654 32 RFAYVPQHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYS--------A----- 98 (155)
Q Consensus 32 ~f~~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~--------~----- 98 (155)
.|+-+++.+.+.+++ +|..|||+|+++||.+++|+|++++||||||||++|++|+++.+...... .
T Consensus 14 ~~~~l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsP 92 (876)
T PRK13767 14 ILDLLRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSP 92 (876)
T ss_pred HHhhcCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcC
Confidence 355566888887766 79999999999999999999999999999999999999999988642110 0
Q ss_pred -----H---------------------------------------HHHHHHhcCCcEEEEChHHHHHHHHcCCC--Cccc
Q 031654 99 -----R---------------------------------------KELRELARWVDNLMATLRRLVNLLERGRV--SLQM 132 (155)
Q Consensus 99 -----~---------------------------------------~~~~~l~~~~~IlI~TP~~l~~~l~~~~~--~l~~ 132 (155)
. ...+.+.+.++|+|+||++|..++....+ .+++
T Consensus 93 traLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~ 172 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRT 172 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhc
Confidence 1 11122334789999999999888876543 5789
Q ss_pred ccceEEEEcccccccccc
Q 031654 133 IIRYLALKEAADQTLDMA 150 (155)
Q Consensus 133 l~~~lVlDEa~D~ll~~g 150 (155)
+ ++||+||+ |.|++..
T Consensus 173 l-~~VVIDE~-H~l~~~~ 188 (876)
T PRK13767 173 V-KWVIVDEI-HSLAENK 188 (876)
T ss_pred C-CEEEEech-hhhccCc
Confidence 9 99999999 9998753
No 43
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.84 E-value=8.8e-21 Score=137.67 Aligned_cols=98 Identities=23% Similarity=0.452 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhh-ch---------------------------------
Q 031654 53 TPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYY-SA--------------------------------- 98 (155)
Q Consensus 53 t~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~-~~--------------------------------- 98 (155)
||+|.++|+.+.+|+|+++.||||+|||++|++|++..+..... ..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999998877621 11
Q ss_pred -----HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccccccc
Q 031654 99 -----RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMALN 152 (155)
Q Consensus 99 -----~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf~ 152 (155)
......+..+++|+|+||+++.+++..+..++.++ +++|+||+ |.+.+.+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~-~~iViDE~-h~l~~~~~~ 137 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRL-SLIVIDEA-HHLSDETFR 137 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTE-SEEEEETH-HHHHHTTHH
T ss_pred cccccccccccccccccccccCcchhhccccccccccccc-eeeccCcc-cccccccHH
Confidence 13344455679999999999999999876688889 99999999 999886543
No 44
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.84 E-value=1.9e-21 Score=158.68 Aligned_cols=64 Identities=30% Similarity=0.514 Sum_probs=59.9
Q ss_pred cccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHh
Q 031654 31 ARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMRE 94 (155)
Q Consensus 31 ~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~ 94 (155)
..|++++ |++-.+..++.|.-||.+|+++||.++.|.||+..|.||||||-||.+|+++-....
T Consensus 2 ~af~e~gv~pel~~a~~e~dw~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqiv~et 67 (725)
T KOG0349|consen 2 TAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWET 67 (725)
T ss_pred cchHhhCcchHhhhhhhhhccccccccccccccEEecCCcEEEEeccCCCCccceehhhHHHHHHH
Confidence 4689998 999999999999999999999999999999999999999999999999999876644
No 45
>PRK01172 ski2-like helicase; Provisional
Probab=99.81 E-value=5e-20 Score=160.58 Aligned_cols=117 Identities=14% Similarity=0.111 Sum_probs=95.4
Q ss_pred ccccC--CHHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------HH
Q 031654 32 RFAYV--PQHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------RK 100 (155)
Q Consensus 32 ~f~~l--~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------~~ 100 (155)
.|+++ ++++.+.+++.+|+ ++++|.++++.+.+|+|++++||||||||++|.++++..+....... .+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q 80 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAME 80 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHH
Confidence 35554 49999999999997 99999999999999999999999999999999999998876543222 11
Q ss_pred HHH-----------------------HHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccccc
Q 031654 101 ELR-----------------------ELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 101 ~~~-----------------------~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf 151 (155)
... .....+||+|+||+++..++++....++++ +++|+||| |.+.+.++
T Consensus 81 ~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v-~lvViDEa-H~l~d~~r 152 (674)
T PRK01172 81 KYEELSRLRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDV-GLIVADEI-HIIGDEDR 152 (674)
T ss_pred HHHHHHHHhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhc-CEEEEecc-hhccCCCc
Confidence 111 111357999999999998888877778999 99999999 99887654
No 46
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=4e-19 Score=156.54 Aligned_cols=108 Identities=14% Similarity=0.171 Sum_probs=87.5
Q ss_pred HHHHHhHH-----hCCCCCC---CHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-----------
Q 031654 38 QHLRNKPR-----TYKYVKP---TPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------- 98 (155)
Q Consensus 38 ~~l~~~l~-----~~g~~~p---t~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------- 98 (155)
+++...+. .+||+.| +|+|.++||.++.++|++++++||||||++|++|++..+.......
T Consensus 71 re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Q 150 (970)
T PRK12899 71 KNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQR 150 (970)
T ss_pred HHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHH
Confidence 55555544 6799999 9999999999999999999999999999999999998876543211
Q ss_pred -------------------------HHHHHHHhcCCcEEEEChHHH-HHHHHcCCCCcc-------cccceEEEEccccc
Q 031654 99 -------------------------RKELRELARWVDNLMATLRRL-VNLLERGRVSLQ-------MIIRYLALKEAADQ 145 (155)
Q Consensus 99 -------------------------~~~~~~l~~~~~IlI~TP~~l-~~~l~~~~~~l~-------~l~~~lVlDEa~D~ 145 (155)
..+...+ +|||+||||++| .++++.+.+.++ .+ +++||||| |.
T Consensus 151 dae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~-~~~IIDEA-Ds 226 (970)
T PRK12899 151 DCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGF-YFAIIDEV-DS 226 (970)
T ss_pred HHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccc-cEEEEech-hh
Confidence 2332222 599999999999 999998866554 66 89999999 99
Q ss_pred cccc
Q 031654 146 TLDM 149 (155)
Q Consensus 146 ll~~ 149 (155)
||-+
T Consensus 227 mLiD 230 (970)
T PRK12899 227 ILID 230 (970)
T ss_pred hhhh
Confidence 9853
No 47
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.79 E-value=3.6e-19 Score=149.54 Aligned_cols=105 Identities=18% Similarity=0.219 Sum_probs=76.4
Q ss_pred HhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHH------------HHHhhhch--------------
Q 031654 45 RTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIING------------IMREYYSA-------------- 98 (155)
Q Consensus 45 ~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~------------l~~~~~~~-------------- 98 (155)
+.+||+.|+|+|.++|+.+++|+|+++++|||||||++|++|++.. |.......
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~ 84 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFLNSS 84 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 3569999999999999999999999999999999999999998641 00000000
Q ss_pred --HH----HHHHH-hcCCcEEEEChHHHHHHHH-cCCC-CcccccceEEEEccccccccccc
Q 031654 99 --RK----ELREL-ARWVDNLMATLRRLVNLLE-RGRV-SLQMIIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 99 --~~----~~~~l-~~~~~IlI~TP~~l~~~l~-~~~~-~l~~l~~~lVlDEa~D~ll~~gf 151 (155)
.. ....+ ...++|+++||+++..... ...+ ...++ +++|+||| |++.++|+
T Consensus 85 ~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i-~~iViDEa-H~i~~~g~ 144 (470)
T TIGR00614 85 QSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGI-TLIAVDEA-HCISQWGH 144 (470)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCc-CEEEEeCC-cccCcccc
Confidence 11 11222 2358999999999753221 1112 56789 99999999 99999884
No 48
>PRK09401 reverse gyrase; Reviewed
Probab=99.78 E-value=1.2e-18 Score=158.71 Aligned_cols=105 Identities=21% Similarity=0.232 Sum_probs=78.6
Q ss_pred HHHHHhHHhC-CCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch------------------
Q 031654 38 QHLRNKPRTY-KYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA------------------ 98 (155)
Q Consensus 38 ~~l~~~l~~~-g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------------------ 98 (155)
.++.+.+++. |+ .||++|+.++|.++.|+|++++||||||||. |.+|++..+.......
T Consensus 67 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~ 144 (1176)
T PRK09401 67 KEFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLE 144 (1176)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHH
Confidence 3444455444 77 8999999999999999999999999999996 6666655554322111
Q ss_pred --------------------HH----HHHHHh-cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccc
Q 031654 99 --------------------RK----ELRELA-RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 99 --------------------~~----~~~~l~-~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
.. +...+. ..+||+|+||++|.+++. .+...++ +++|+||| |+|++
T Consensus 145 ~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~-~~lVvDEa-D~~L~ 215 (1176)
T PRK09401 145 KFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKF-DFVFVDDV-DAVLK 215 (1176)
T ss_pred HHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hcccccc-CEEEEECh-HHhhh
Confidence 01 122233 359999999999999886 4566779 99999999 99997
No 49
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.77 E-value=5.8e-19 Score=158.14 Aligned_cols=112 Identities=18% Similarity=0.242 Sum_probs=80.2
Q ss_pred HHHHHhHH-hCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHH------------HHhhhch------
Q 031654 38 QHLRNKPR-TYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGI------------MREYYSA------ 98 (155)
Q Consensus 38 ~~l~~~l~-~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l------------~~~~~~~------ 98 (155)
..+...++ .+||..++|+|.++|+.++.|+|+++++|||+|||+||++|++..- .......
T Consensus 446 ~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~L~~~GI 525 (1195)
T PLN03137 446 KKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMNLLQANI 525 (1195)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHhCCC
Confidence 55555555 4599999999999999999999999999999999999999986421 1000000
Q ss_pred -----------HHHH---HHHh---cCCcEEEEChHHHHH--HHHcC--CC-CcccccceEEEEccccccccccc
Q 031654 99 -----------RKEL---RELA---RWVDNLMATLRRLVN--LLERG--RV-SLQMIIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 99 -----------~~~~---~~l~---~~~~IlI~TP~~l~~--~l~~~--~~-~l~~l~~~lVlDEa~D~ll~~gf 151 (155)
.++. +.+. ..++||++||++|.. .+.+. .+ ....+ .+|||||| |+|+++|+
T Consensus 526 ~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~L-slIVIDEA-HcVSqWGh 598 (1195)
T PLN03137 526 PAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLL-ARFVIDEA-HCVSQWGH 598 (1195)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccc-ceeccCcc-hhhhhccc
Confidence 1222 2222 468999999999862 22221 11 23457 99999999 99999983
No 50
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.77 E-value=1.8e-18 Score=157.58 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=83.2
Q ss_pred HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-------------------
Q 031654 38 QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA------------------- 98 (155)
Q Consensus 38 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------------------- 98 (155)
.++.+.+.+.....|+++|+.++|.++.|+|++++||||||||+ |.+|++..+.......
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~ 143 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISS 143 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHH
Confidence 44556666554558999999999999999999999999999997 7777766554322111
Q ss_pred ---------------------H---HHHHHHhc-CCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccc-----
Q 031654 99 ---------------------R---KELRELAR-WVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLD----- 148 (155)
Q Consensus 99 ---------------------~---~~~~~l~~-~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~----- 148 (155)
. .+...+.+ +++|||+||++|.+.+..- .. ++ +++|+||| |+|++
T Consensus 144 l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~-~~iVvDEa-D~~L~~~k~v 218 (1171)
T TIGR01054 144 LAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KF-DFIFVDDV-DALLKASKNV 218 (1171)
T ss_pred HHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CC-CEEEEeCh-HhhhhccccH
Confidence 0 11222333 5999999999999887652 12 88 99999999 99999
Q ss_pred ------cccccC
Q 031654 149 ------MALNQK 154 (155)
Q Consensus 149 ------~gf~~~ 154 (155)
+||.+|
T Consensus 219 d~il~llGF~~e 230 (1171)
T TIGR01054 219 DKLLKLLGFSEE 230 (1171)
T ss_pred HHHHHHcCCCHH
Confidence 789763
No 51
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.77 E-value=2.1e-18 Score=153.10 Aligned_cols=110 Identities=23% Similarity=0.306 Sum_probs=92.3
Q ss_pred ccccCC-HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch------------
Q 031654 32 RFAYVP-QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA------------ 98 (155)
Q Consensus 32 ~f~~l~-~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------------ 98 (155)
.|..+. ..+..++.+.|+..++++|.+|+..+.+|+||||+++||||||.||++|+++++.......
T Consensus 50 ~~~~~~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~ 129 (851)
T COG1205 50 EFPELRDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALAN 129 (851)
T ss_pred cchhhhhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHh
Confidence 345555 6678899999999999999999999999999999999999999999999999999877663
Q ss_pred ----------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCC----CCcccccceEEEEcc
Q 031654 99 ----------------------------RKELRELARWVDNLMATLRRLVNLLERGR----VSLQMIIRYLALKEA 142 (155)
Q Consensus 99 ----------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~----~~l~~l~~~lVlDEa 142 (155)
.+......+.||||++||..|..++-+.. ..++++ +|||+||+
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~L-k~lVvDEl 204 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNL-KYLVVDEL 204 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcC-cEEEEecc
Confidence 12224456789999999999988665542 457889 99999999
No 52
>PRK14701 reverse gyrase; Provisional
Probab=99.77 E-value=1.3e-18 Score=161.79 Aligned_cols=106 Identities=14% Similarity=0.142 Sum_probs=80.2
Q ss_pred HHHHHhHHh-CCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch------------------
Q 031654 38 QHLRNKPRT-YKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA------------------ 98 (155)
Q Consensus 38 ~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------------------ 98 (155)
.++.+.+++ .|| .|+++|+.+||.+++|+|++++||||||||++++++.+..........
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~ 144 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIES 144 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHH
Confidence 677777876 799 699999999999999999999999999999977666554322211000
Q ss_pred --------------------HHH---HHHHhc-CCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccc
Q 031654 99 --------------------RKE---LRELAR-WVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 99 --------------------~~~---~~~l~~-~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
.++ ...+.+ .++|||+||++|.+.+... ...++ +++|+||| |+|++
T Consensus 145 l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i-~~iVVDEA-D~ml~ 214 (1638)
T PRK14701 145 FCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKF-DFIFVDDV-DAFLK 214 (1638)
T ss_pred HHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCC-CEEEEECc-eeccc
Confidence 111 223444 4999999999998877642 22778 99999999 99997
No 53
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.76 E-value=1.4e-18 Score=149.57 Aligned_cols=105 Identities=19% Similarity=0.157 Sum_probs=80.3
Q ss_pred HhHHh-CCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------------------
Q 031654 42 NKPRT-YKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------------------- 98 (155)
Q Consensus 42 ~~l~~-~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------------------- 98 (155)
+.|++ +||+.++|+|.++|+.+++|+|+++++|||+|||+||++|++.. .....
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---~g~~lVisPl~sL~~dq~~~l~~~gi~ 79 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---KGLTVVISPLISLMKDQVDQLRAAGVA 79 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---CCcEEEEcCCHHHHHHHHHHHHHcCCc
Confidence 44544 69999999999999999999999999999999999999998742 11111
Q ss_pred ---------HH----HHHHH-hcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccccc
Q 031654 99 ---------RK----ELREL-ARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 99 ---------~~----~~~~l-~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf 151 (155)
.. ....+ ...++|+++||+++......+.+...++ +++|+||| |++.++|+
T Consensus 80 ~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l-~~iViDEa-H~i~~~g~ 144 (591)
T TIGR01389 80 AAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPI-ALVAVDEA-HCVSQWGH 144 (591)
T ss_pred EEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCC-CEEEEeCC-cccccccC
Confidence 11 11112 2468999999999865433344566789 99999999 99999874
No 54
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.75 E-value=5.4e-18 Score=146.42 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=78.4
Q ss_pred HHhHHh-CCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHH------------Hhhhch---------
Q 031654 41 RNKPRT-YKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIM------------REYYSA--------- 98 (155)
Q Consensus 41 ~~~l~~-~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~------------~~~~~~--------- 98 (155)
.+.|++ +||+.|+|+|.++|+.+++|+|+++++|||+|||++|++|++..-. ......
T Consensus 14 ~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l~~~gi~~~ 93 (607)
T PRK11057 14 KQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQLLANGVAAA 93 (607)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHHHHcCCcEE
Confidence 344443 6999999999999999999999999999999999999999774310 000000
Q ss_pred --------HH---HHHHHh-cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccccc
Q 031654 99 --------RK---ELRELA-RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 99 --------~~---~~~~l~-~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf 151 (155)
.. ....+. ...+++++||+++........+...++ .++|+||| |++.++|+
T Consensus 94 ~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l-~~iVIDEa-H~i~~~G~ 156 (607)
T PRK11057 94 CLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNP-ALLAVDEA-HCISQWGH 156 (607)
T ss_pred EEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCC-CEEEEeCc-cccccccC
Confidence 11 111222 357999999999864222223445678 99999999 99999874
No 55
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.72 E-value=1.1e-17 Score=147.21 Aligned_cols=99 Identities=18% Similarity=0.148 Sum_probs=74.5
Q ss_pred CCCCCCCHHHHHHHHHHhcCC-cEEEEccCCCCcchhhhhHHHHHHH-----------------------------Hhhh
Q 031654 47 YKYVKPTPVQRHATSILVAGR-DLMACAQTGSRKTTPFCFPIINGIM-----------------------------REYY 96 (155)
Q Consensus 47 ~g~~~pt~iQ~~~i~~~l~g~-dvl~~a~TGsGKT~~yllp~l~~l~-----------------------------~~~~ 96 (155)
.||+ |||+|.++||.++.|+ ++++++|||||||.+|+++++.... +...
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~ 90 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLP 90 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhc
Confidence 4898 9999999999999998 6888899999999955433332100 0000
Q ss_pred ----------------------ch-----------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCC--------------
Q 031654 97 ----------------------SA-----------RKELRELARWVDNLMATLRRLVNLLERGRVS-------------- 129 (155)
Q Consensus 97 ----------------------~~-----------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~-------------- 129 (155)
.. ..|...+..+|+|||||+ +++.++.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~~~pi~a 166 (844)
T TIGR02621 91 DVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFKSRPLHA 166 (844)
T ss_pred ccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccccccchh
Confidence 00 577777778899999994 667666652
Q ss_pred --cccccceEEEEcccccccccccccC
Q 031654 130 --LQMIIRYLALKEAADQTLDMALNQK 154 (155)
Q Consensus 130 --l~~l~~~lVlDEa~D~ll~~gf~~~ 154 (155)
++++ +++||||| | +++||.++
T Consensus 167 g~L~~v-~~LVLDEA-D--Ld~gF~~~ 189 (844)
T TIGR02621 167 GFLGQD-ALIVHDEA-H--LEPAFQEL 189 (844)
T ss_pred hhhccc-eEEEEehh-h--hccccHHH
Confidence 7889 99999999 9 89999763
No 56
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.63 E-value=1.3e-15 Score=133.18 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=75.3
Q ss_pred HhHHhCCCCCCCHHHHHHHHHHhcC------CcEEEEccCCCCcchhhhhHHHHHHHHhhhch-----------------
Q 031654 42 NKPRTYKYVKPTPVQRHATSILVAG------RDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------------- 98 (155)
Q Consensus 42 ~~l~~~g~~~pt~iQ~~~i~~~l~g------~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------------- 98 (155)
+....++| .||++|.+|++.+.++ .|++++|+||||||++|++|++..+.......
T Consensus 253 ~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~ 331 (681)
T PRK10917 253 KFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLK 331 (681)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHH
Confidence 34466788 5999999999999887 48999999999999999999988775422111
Q ss_pred ----------------------HHHHHHHhc-CCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccc
Q 031654 99 ----------------------RKELRELAR-WVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 99 ----------------------~~~~~~l~~-~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~l 146 (155)
..+...+.. .++|+||||+++. ..+.+.++ +++|+||+ |++
T Consensus 332 ~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-----~~v~~~~l-~lvVIDE~-Hrf 395 (681)
T PRK10917 332 KLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-----DDVEFHNL-GLVIIDEQ-HRF 395 (681)
T ss_pred HHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-----ccchhccc-ceEEEech-hhh
Confidence 222334444 4999999998864 34568899 99999999 985
No 57
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.62 E-value=2.1e-15 Score=135.05 Aligned_cols=101 Identities=22% Similarity=0.277 Sum_probs=77.2
Q ss_pred HHHHHhH-HhCCCCCCCHHHHHHHHHHhcC------CcEEEEccCCCCcchhhhhHHHHHHHHhhhch------------
Q 031654 38 QHLRNKP-RTYKYVKPTPVQRHATSILVAG------RDLMACAQTGSRKTTPFCFPIINGIMREYYSA------------ 98 (155)
Q Consensus 38 ~~l~~~l-~~~g~~~pt~iQ~~~i~~~l~g------~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------------ 98 (155)
..+.+.+ ..++|+ ||++|..||+.++++ .|++++|+||||||.+|++|++..+.......
T Consensus 438 ~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~ 516 (926)
T TIGR00580 438 LEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQH 516 (926)
T ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHH
Confidence 4555555 456885 999999999999885 79999999999999999999988776543221
Q ss_pred ---------------------------HHHHHHHhc-CCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccc
Q 031654 99 ---------------------------RKELRELAR-WVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 99 ---------------------------~~~~~~l~~-~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~l 146 (155)
......+.. .++||||||.. + .+.+.+.++ +++||||+ |++
T Consensus 517 ~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L-~llVIDEa-hrf 585 (926)
T TIGR00580 517 FETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDL-GLLIIDEE-QRF 585 (926)
T ss_pred HHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccC-CEEEeecc-ccc
Confidence 122233433 58999999942 2 356789999 99999999 985
No 58
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.61 E-value=2.6e-15 Score=130.34 Aligned_cols=101 Identities=16% Similarity=0.226 Sum_probs=77.4
Q ss_pred HHHHHhHHhCCCCCCCHHHHHHHHHHhcC------CcEEEEccCCCCcchhhhhHHHHHHHHhhhch-------------
Q 031654 38 QHLRNKPRTYKYVKPTPVQRHATSILVAG------RDLMACAQTGSRKTTPFCFPIINGIMREYYSA------------- 98 (155)
Q Consensus 38 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g------~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------------- 98 (155)
..+.+.++.++| .||+.|.+||+.++++ .+.+++|+||||||++|++|++..+.......
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~ 301 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHY 301 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHH
Confidence 445566788899 7999999999999876 26899999999999999999988765432211
Q ss_pred --------------------------HHHHHHHhc-CCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccc
Q 031654 99 --------------------------RKELRELAR-WVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 99 --------------------------~~~~~~l~~-~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~l 146 (155)
..+...+.. .++|+|+||+++.+ .+.+.++ .++|+||+ |++
T Consensus 302 ~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l-~lvVIDEa-H~f 369 (630)
T TIGR00643 302 NSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRL-ALVIIDEQ-HRF 369 (630)
T ss_pred HHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----ccccccc-ceEEEech-hhc
Confidence 112233332 58999999998643 4568899 99999999 983
No 59
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.56 E-value=1.9e-14 Score=131.24 Aligned_cols=101 Identities=19% Similarity=0.243 Sum_probs=75.9
Q ss_pred HHHHHhHHhCCCCCCCHHHHHHHHHHhcC------CcEEEEccCCCCcchhhhhHHHHHHHHhhhch-------------
Q 031654 38 QHLRNKPRTYKYVKPTPVQRHATSILVAG------RDLMACAQTGSRKTTPFCFPIINGIMREYYSA------------- 98 (155)
Q Consensus 38 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g------~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------------- 98 (155)
++..+...+++| .||++|.+||+.++.+ +|++++|+||||||.+|+.+++..+.......
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~ 666 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHY 666 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHH
Confidence 455566678889 7999999999999987 89999999999999999888765543221111
Q ss_pred -----------------------HHHH---HHHh-cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccc
Q 031654 99 -----------------------RKEL---RELA-RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 99 -----------------------~~~~---~~l~-~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~l 146 (155)
.++. ..+. ..+||+||||+.+ ...+.+.++ ++|||||+ |++
T Consensus 667 ~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L-~lLVIDEa-hrf 734 (1147)
T PRK10689 667 DNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDL-GLLIVDEE-HRF 734 (1147)
T ss_pred HHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhC-CEEEEech-hhc
Confidence 1222 2222 3689999999643 245678899 99999999 996
No 60
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.55 E-value=3.8e-14 Score=103.47 Aligned_cols=101 Identities=33% Similarity=0.471 Sum_probs=82.0
Q ss_pred hCCCCCCCHHHHHHHHHHhcC-CcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------------------------
Q 031654 46 TYKYVKPTPVQRHATSILVAG-RDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------------------------- 98 (155)
Q Consensus 46 ~~g~~~pt~iQ~~~i~~~l~g-~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------------------------- 98 (155)
..++..|++.|.+++..+..+ ++++++++||||||.+++.+++..+.......
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 457889999999999999999 99999999999999999999888776541111
Q ss_pred ------------HHHHHHHhcCC-cEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccc
Q 031654 99 ------------RKELRELARWV-DNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 99 ------------~~~~~~l~~~~-~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
......+..+. +++++|++.+.+.+.........+ +++|+||+ |.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~-~~iIiDE~-h~~~~ 143 (201)
T smart00487 83 LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNV-DLVILDEA-HRLLD 143 (201)
T ss_pred eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHC-CEEEEECH-HHHhc
Confidence 11122233344 999999999999999887788889 99999999 88775
No 61
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=2.9e-14 Score=125.46 Aligned_cols=103 Identities=20% Similarity=0.227 Sum_probs=78.7
Q ss_pred HHHhHH-hCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------------------
Q 031654 40 LRNKPR-TYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------------------- 98 (155)
Q Consensus 40 l~~~l~-~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------------------- 98 (155)
+.++.. .+|. +|+++|..+++.+..|+ ++.+.||+|||++|++|++..........
T Consensus 67 vrea~~R~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 67 VREAAKRVLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred HHHHHHHHhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 334443 3466 89999999999999987 99999999999999999986555433222
Q ss_pred --------------H-HHHHHHhcCCcEEEEChHHH-HHHHHcCC------CCcccccceEEEEccccccc
Q 031654 99 --------------R-KELRELARWVDNLMATLRRL-VNLLERGR------VSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 99 --------------~-~~~~~l~~~~~IlI~TP~~l-~~~l~~~~------~~l~~l~~~lVlDEa~D~ll 147 (155)
. ...+....+|||++|||+++ .++++.+. ..++.+ +++||||| |.||
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~-~~~IvDEa-DsiL 212 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPL-NYAIIDEI-DSIL 212 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhccccc-ceEEEecc-ccce
Confidence 2 34444456799999999999 56665432 356888 99999999 9998
No 62
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.52 E-value=2.1e-14 Score=125.13 Aligned_cols=104 Identities=21% Similarity=0.192 Sum_probs=78.6
Q ss_pred HHHhHHh-CCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------------------
Q 031654 40 LRNKPRT-YKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------------------- 98 (155)
Q Consensus 40 l~~~l~~-~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------------------- 98 (155)
+.++..+ +|. +|+++|..+.+.+..|+ ++.++||+|||++|++|++-.........
T Consensus 45 vrEa~~R~lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 45 VREASKRVLGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred HHHHHHHHhCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 3344433 354 88999999999998887 99999999999999999964444332211
Q ss_pred --------------HHHHHHHhcCCcEEEEChHHH-HHHHHcC------CCCcccccceEEEEcccccccc
Q 031654 99 --------------RKELRELARWVDNLMATLRRL-VNLLERG------RVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 99 --------------~~~~~~l~~~~~IlI~TP~~l-~~~l~~~------~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
..+.+.....+||++|||++| .++++.+ .+.++.+ .++|+||+ |.|+=
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l-~~aIIDEa-Ds~LI 190 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPF-HFAIIDEV-DSILI 190 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhcccc-ceeEeecH-HHHhH
Confidence 222233334589999999999 8998876 3578899 99999999 99984
No 63
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.50 E-value=3.3e-14 Score=125.28 Aligned_cols=112 Identities=14% Similarity=0.128 Sum_probs=86.7
Q ss_pred CCHHHHHhHHhCCCCCCCHHHHHHHHHH-hcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------HHHHHH
Q 031654 36 VPQHLRNKPRTYKYVKPTPVQRHATSIL-VAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------RKELRE 104 (155)
Q Consensus 36 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~-l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------~~~~~~ 104 (155)
+++.+.+.++..|+....+-|+.++... ..|+|+++++|||||||+..++.+++.+....... .+..+.
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~ 95 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEE 95 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHH
Confidence 4478888888889987777777777655 45699999999999999999999999998752222 222222
Q ss_pred Hh-----------------------cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccc
Q 031654 105 LA-----------------------RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 105 l~-----------------------~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
+. .+++|+|+||+++-.++++...-...+ ++||+||+ |.+-|.
T Consensus 96 ~~~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V-~lvViDEi-H~l~d~ 161 (766)
T COG1204 96 FSRLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEV-DLVVIDEI-HLLGDR 161 (766)
T ss_pred hhhHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcc-cEEEEeee-eecCCc
Confidence 21 358999999999888887777778899 99999999 666543
No 64
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.50 E-value=4.5e-14 Score=123.55 Aligned_cols=98 Identities=20% Similarity=0.153 Sum_probs=73.0
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------------------------
Q 031654 47 YKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------------------------- 98 (155)
Q Consensus 47 ~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------------------------- 98 (155)
+|. +|+++|..+...+..| .+++++||+|||++|++|++..........
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~ 143 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVS 143 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEE
Confidence 365 7888888888777776 699999999999999999876665433211
Q ss_pred -----------HHHHHHHhcCCcEEEEChHHH-HHHHHcC------CCCcccccceEEEEccccccccc
Q 031654 99 -----------RKELRELARWVDNLMATLRRL-VNLLERG------RVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 99 -----------~~~~~~l~~~~~IlI~TP~~l-~~~l~~~------~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
..+.+....+|||++|||++| .+++..+ ...++.+ .++|+||| |.||-+
T Consensus 144 ~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l-~~~IVDEa-DsILiD 210 (762)
T TIGR03714 144 LGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPF-NYVIVDEV-DSVLLD 210 (762)
T ss_pred EEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccC-cEEEEecH-hhHhhc
Confidence 112233345899999999999 5655432 3457889 99999999 999754
No 65
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.49 E-value=2.2e-14 Score=126.74 Aligned_cols=111 Identities=16% Similarity=0.208 Sum_probs=81.0
Q ss_pred ccccCCHHHHHhHHhCCCCCCCHHHHHHHHHHhcC-CcEEEEccCCCCcchhhhhHHHHHHHHhhhch------------
Q 031654 32 RFAYVPQHLRNKPRTYKYVKPTPVQRHATSILVAG-RDLMACAQTGSRKTTPFCFPIINGIMREYYSA------------ 98 (155)
Q Consensus 32 ~f~~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g-~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------------ 98 (155)
+.++|+..-. ..-++|+.++.+|+.++|.+.+. .|.+||||||||||..|+|.+++.+.+.....
T Consensus 93 ~isdld~~~r--k~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYI 170 (1230)
T KOG0952|consen 93 SISDLDDVGR--KGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYI 170 (1230)
T ss_pred eEEecchhhh--hhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEE
Confidence 3444443322 34457899999999999999876 79999999999999999999999998622111
Q ss_pred --------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCC----CcccccceEEEEcc
Q 031654 99 --------------------------------RKELRELARWVDNLMATLRRLVNLLERGRV----SLQMIIRYLALKEA 142 (155)
Q Consensus 99 --------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~----~l~~l~~~lVlDEa 142 (155)
.--..+ ...++|||+||++ .|.+.++.. .++.+ ++||+||+
T Consensus 171 aPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te-i~~tqiiVTTPEK-wDvvTRk~~~d~~l~~~V-~LviIDEV 247 (1230)
T KOG0952|consen 171 APMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE-IADTQIIVTTPEK-WDVVTRKSVGDSALFSLV-RLVIIDEV 247 (1230)
T ss_pred echHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH-HHhcCEEEecccc-eeeeeeeeccchhhhhhe-eeEEeeee
Confidence 011111 2358999999999 677776543 35677 99999999
Q ss_pred cccccc
Q 031654 143 ADQTLD 148 (155)
Q Consensus 143 ~D~ll~ 148 (155)
|.|-|
T Consensus 248 -HlLhd 252 (1230)
T KOG0952|consen 248 -HLLHD 252 (1230)
T ss_pred -hhhcC
Confidence 65544
No 66
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.44 E-value=1.8e-13 Score=116.70 Aligned_cols=112 Identities=18% Similarity=0.243 Sum_probs=81.4
Q ss_pred HHhHHh-CCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHH------------HHHhhhch---------
Q 031654 41 RNKPRT-YKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIING------------IMREYYSA--------- 98 (155)
Q Consensus 41 ~~~l~~-~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~------------l~~~~~~~--------- 98 (155)
.+.|+. +||..+.+-|.++|..+++|+|+++.-|||.||++||.+|.+-. |++.....
T Consensus 6 ~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~ 85 (590)
T COG0514 6 QQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGIRAA 85 (590)
T ss_pred HHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCceee
Confidence 344544 49999999999999999999999999999999999999998754 11110000
Q ss_pred -----------HHHHHHHhc-CCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccccc--cccC
Q 031654 99 -----------RKELRELAR-WVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMA--LNQK 154 (155)
Q Consensus 99 -----------~~~~~~l~~-~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~g--f~~~ 154 (155)
......+.. ..++|.-+|++|..--..+.+.-..+ .++||||| |++.++| |.++
T Consensus 86 ~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i-~l~vIDEA-HCiSqWGhdFRP~ 153 (590)
T COG0514 86 YLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPI-SLVAIDEA-HCISQWGHDFRPD 153 (590)
T ss_pred hhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCC-ceEEechH-HHHhhcCCccCHh
Confidence 112222222 47999999999855433333335567 89999999 9999998 6653
No 67
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=4.2e-13 Score=116.12 Aligned_cols=93 Identities=25% Similarity=0.242 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------------------------------
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------------------------------- 98 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------------------------------- 98 (155)
+|+++|..++|.++.|+ ++.+.||+|||++|++|++..........
T Consensus 103 ~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~g 180 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVE 180 (656)
T ss_pred CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 78999999999999999 99999999999999999998776433221
Q ss_pred --HHHHHHHhcCCcEEEEChHHH-HHHHHcCC-------------------------CCcccccceEEEEccccccc
Q 031654 99 --RKELRELARWVDNLMATLRRL-VNLLERGR-------------------------VSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 99 --~~~~~~l~~~~~IlI~TP~~l-~~~l~~~~-------------------------~~l~~l~~~lVlDEa~D~ll 147 (155)
..+.+....+|||++||...+ .|+|+.+. .-...+ .+.||||| |.+|
T Consensus 181 g~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~-~~aIvDEv-DSiL 255 (656)
T PRK12898 181 DQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGL-HFAIVDEA-DSVL 255 (656)
T ss_pred CCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccccc-ceeEeecc-ccee
Confidence 344555567899999999887 44554331 113557 89999999 9887
No 68
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.42 E-value=1.9e-13 Score=126.52 Aligned_cols=77 Identities=21% Similarity=0.191 Sum_probs=59.7
Q ss_pred EEccCCCCcchhhhhHHHHHHHHhh----------hch------------H-----------------------------
Q 031654 71 ACAQTGSRKTTPFCFPIINGIMREY----------YSA------------R----------------------------- 99 (155)
Q Consensus 71 ~~a~TGsGKT~~yllp~l~~l~~~~----------~~~------------~----------------------------- 99 (155)
++||||||||+||.+|+++++.... ... .
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999997542 011 1
Q ss_pred ----------HHHHHHhcCCcEEEEChHHHHHHHHcC-CCCcccccceEEEEccccccccc
Q 031654 100 ----------KELRELARWVDNLMATLRRLVNLLERG-RVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 100 ----------~~~~~l~~~~~IlI~TP~~l~~~l~~~-~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
++.+.+++.+||||+||++|..++.++ ...++++ ++|||||+ |.|++.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~V-r~VIVDE~-H~L~g~ 139 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGV-ETVIIDEV-HAVAGS 139 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccC-CEEEEecH-HHhccc
Confidence 111223357899999999999988764 3578999 99999999 999975
No 69
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.42 E-value=9.5e-13 Score=111.12 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=83.2
Q ss_pred cCCHHHHHhHHhCCCCCCCHHHHHHHHH-HhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhh-----------------
Q 031654 35 YVPQHLRNKPRTYKYVKPTPVQRHATSI-LVAGRDLMACAQTGSRKTTPFCFPIINGIMREYY----------------- 96 (155)
Q Consensus 35 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~-~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~----------------- 96 (155)
++|+.+.+.|+..|++.+.|+|..|+.. ++.|.|.+++++|+||||+.--++-+.++.....
T Consensus 200 dipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~ 279 (830)
T COG1202 200 DIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYE 279 (830)
T ss_pred CCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHH
Confidence 3459999999999999999999999975 5799999999999999998854444444443221
Q ss_pred chHHHHH------------------------HHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccc
Q 031654 97 SARKELR------------------------ELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 97 ~~~~~~~------------------------~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
...+... .....+||+|||-+.+-.+++.+ .++.++ ..+|+||+ |.|=|
T Consensus 280 dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdi-GtVVIDEi-HtL~d 352 (830)
T COG1202 280 DFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDI-GTVVIDEI-HTLED 352 (830)
T ss_pred HHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Cccccc-ceEEeeee-eeccc
Confidence 1111111 11125799999999988888777 789999 99999999 55443
No 70
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=3.8e-13 Score=118.99 Aligned_cols=93 Identities=20% Similarity=0.196 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------------------------------
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------------------------------- 98 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------------------------------- 98 (155)
+|+++|-..--.+..|+ ++.++||+|||++|++|++..+.......
T Consensus 82 ~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~g 159 (896)
T PRK13104 82 RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYP 159 (896)
T ss_pred CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeC
Confidence 67888877655555555 88999999999999999998776543221
Q ss_pred --HHHHHHHhcCCcEEEEChHHH-HHHHHcC-CCCc-----ccccceEEEEccccccc
Q 031654 99 --RKELRELARWVDNLMATLRRL-VNLLERG-RVSL-----QMIIRYLALKEAADQTL 147 (155)
Q Consensus 99 --~~~~~~l~~~~~IlI~TP~~l-~~~l~~~-~~~l-----~~l~~~lVlDEa~D~ll 147 (155)
....+.....|||++|||++| .++++.+ .+++ ..+ .++||||| |.||
T Consensus 160 g~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l-~~~IvDEa-DsiL 215 (896)
T PRK13104 160 DMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQREL-NFAIVDEV-DSIL 215 (896)
T ss_pred CCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhcccc-ceEEeccH-hhhh
Confidence 112222233699999999999 9999877 3455 588 99999999 9998
No 71
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.40 E-value=2.8e-12 Score=114.72 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=48.1
Q ss_pred cccCCHHHHHhHHhCCCCCCCHHHHHHHH----HHhcCCcEEEEccCCCCcchhhhhHHHHHHH
Q 031654 33 FAYVPQHLRNKPRTYKYVKPTPVQRHATS----ILVAGRDLMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 33 f~~l~~~l~~~l~~~g~~~pt~iQ~~~i~----~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
|..+.+.+.+.+...||+ ++|.|.+.+. .+.+|+++++.||||+|||++|++|++..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~ 290 (850)
T TIGR01407 228 YNTLSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI 290 (850)
T ss_pred cccccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc
Confidence 333335778888888997 7899998665 5567899999999999999999999987654
No 72
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.34 E-value=4e-12 Score=107.86 Aligned_cols=97 Identities=10% Similarity=0.019 Sum_probs=68.5
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhh-ch-------------HHHHHHHh--------
Q 031654 49 YVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYY-SA-------------RKELRELA-------- 106 (155)
Q Consensus 49 ~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~-~~-------------~~~~~~l~-------- 106 (155)
...|++.|.++++.++.+++.++++|||+|||+++..-+ ..+..... .. ........
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~ 190 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMH 190 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccccccee
Confidence 458999999999999999999999999999999765422 22222221 11 11111110
Q ss_pred ---------cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccccc
Q 031654 107 ---------RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 107 ---------~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf 151 (155)
.+++|+|+||+++.+... ..++++ .++|+||| |++....|
T Consensus 191 ~i~~g~~~~~~~~I~VaT~qsl~~~~~---~~~~~~-~~iIvDEa-H~~~~~~~ 239 (501)
T PHA02558 191 KIYSGTAKDTDAPIVVSTWQSAVKQPK---EWFDQF-GMVIVDEC-HLFTGKSL 239 (501)
T ss_pred EEecCcccCCCCCEEEeeHHHHhhchh---hhcccc-CEEEEEch-hcccchhH
Confidence 236899999999875432 246789 99999999 99986554
No 73
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.32 E-value=2.3e-12 Score=114.50 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=67.0
Q ss_pred HHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch------------HHHH-H------------------HHh
Q 031654 58 HATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA------------RKEL-R------------------ELA 106 (155)
Q Consensus 58 ~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------------~~~~-~------------------~l~ 106 (155)
..+..+.++.+++++|+||||||.+|.+|+++......... .... . ...
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~~s 88 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENKVS 88 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccccccC
Confidence 44556667899999999999999999999998753211111 1111 1 112
Q ss_pred cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccc-ccccccc
Q 031654 107 RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAAD-QTLDMAL 151 (155)
Q Consensus 107 ~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D-~ll~~gf 151 (155)
...+|+|+|||+|++++..+ ..++++ ++|||||+ | ++++.+|
T Consensus 89 ~~t~I~v~T~G~Llr~l~~d-~~L~~v-~~VIiDEa-HER~L~~Dl 131 (819)
T TIGR01970 89 RRTRLEVVTEGILTRMIQDD-PELDGV-GALIFDEF-HERSLDADL 131 (819)
T ss_pred CCCcEEEECCcHHHHHHhhC-cccccC-CEEEEecc-chhhhccch
Confidence 35799999999999999864 579999 99999999 9 5777543
No 74
>PRK13766 Hef nuclease; Provisional
Probab=99.32 E-value=9.5e-12 Score=110.22 Aligned_cols=96 Identities=20% Similarity=0.195 Sum_probs=76.8
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-------------------------------
Q 031654 50 VKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA------------------------------- 98 (155)
Q Consensus 50 ~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------------------------------- 98 (155)
-.|++.|......++.+ |+++++|||+|||++|++++...+.......
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~ 92 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVF 92 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 46789999999888887 9999999999999999999887764221111
Q ss_pred -----HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccc
Q 031654 99 -----RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 99 -----~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
..+...+..+++|+|+||+.+...+..+.+.+.++ .++|+||| |++..
T Consensus 93 ~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~-~liVvDEa-H~~~~ 145 (773)
T PRK13766 93 TGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDV-SLLIFDEA-HRAVG 145 (773)
T ss_pred eCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhC-cEEEEECC-ccccc
Confidence 12223344568999999999998888888899999 99999999 98864
No 75
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.28 E-value=4.8e-12 Score=110.38 Aligned_cols=88 Identities=13% Similarity=0.127 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCCcchh---------hhhHHHHHHHH---hhh--ch-------------HHHH----
Q 031654 54 PVQRHATSILVAGRDLMACAQTGSRKTTP---------FCFPIINGIMR---EYY--SA-------------RKEL---- 102 (155)
Q Consensus 54 ~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~---------yllp~l~~l~~---~~~--~~-------------~~~~---- 102 (155)
.+|.++++.+++|+|++++|+||||||.+ |++|.+..+.. ... .. ....
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999997 66666665532 110 01 0000
Q ss_pred ----------------------HHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccccc
Q 031654 103 ----------------------RELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMA 150 (155)
Q Consensus 103 ----------------------~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~g 150 (155)
....++.+|+|+|++. ....++++ ++|||||| |++..++
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v-~~VVIDEa-HEr~~~~ 307 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL-------TLNKLFDY-GTVIIDEV-HEHDQIG 307 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc-------cccccccC-CEEEcccc-ccCccch
Confidence 1111245789999752 12357889 99999999 9998876
No 76
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.27 E-value=1.8e-11 Score=107.33 Aligned_cols=87 Identities=16% Similarity=0.183 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHhcC---CcEEEEccCCCCcchhhhhHHHHHHHHhhhch-----------------------------
Q 031654 51 KPTPVQRHATSILVAG---RDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------------------------- 98 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g---~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------------------------- 98 (155)
.+|+.|++++..+.++ +++++.++||||||.+|+.++...+..+....
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s 223 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHS 223 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5899999999999874 88999999999999999988776665432211
Q ss_pred ----HH---HHHHH-hcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccc
Q 031654 99 ----RK---ELREL-ARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 99 ----~~---~~~~l-~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~l 146 (155)
.+ ....+ ...++|+||||+.+. ..++++ .++|+||+ |..
T Consensus 224 ~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l-~liVvDEe-h~~ 270 (679)
T PRK05580 224 GLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNL-GLIIVDEE-HDS 270 (679)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCC-CEEEEECC-Ccc
Confidence 11 11222 235899999998763 457899 99999999 853
No 77
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.26 E-value=4.6e-12 Score=112.63 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=64.1
Q ss_pred HHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch------------HHHH-HH------------------Hh
Q 031654 58 HATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA------------RKEL-RE------------------LA 106 (155)
Q Consensus 58 ~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------------~~~~-~~------------------l~ 106 (155)
+.+..+.++++++++|+||||||++|.+|+++......... .... .. ..
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~~ 91 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKVG 91 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccccC
Confidence 34455667899999999999999999999987542211111 1111 11 11
Q ss_pred cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccc-cccc
Q 031654 107 RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQ-TLDM 149 (155)
Q Consensus 107 ~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~-ll~~ 149 (155)
...+|+|+|||+|++++..+ ..++++ +++||||+ |. +++.
T Consensus 92 ~~t~I~v~T~G~Llr~l~~d-~~L~~v-~~IIlDEa-HER~l~~ 132 (812)
T PRK11664 92 PNTRLEVVTEGILTRMIQRD-PELSGV-GLVILDEF-HERSLQA 132 (812)
T ss_pred CCCcEEEEChhHHHHHHhhC-CCcCcC-cEEEEcCC-Ccccccc
Confidence 23589999999999998864 579999 99999999 96 5553
No 78
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.25 E-value=2e-11 Score=99.62 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCc--EEEEccCCCCcchhhhhHHHH
Q 031654 55 VQRHATSILVAGRD--LMACAQTGSRKTTPFCFPIIN 89 (155)
Q Consensus 55 iQ~~~i~~~l~g~d--vl~~a~TGsGKT~~yllp~l~ 89 (155)
+|.++++.+.++.+ ++++||||||||.+|++|++.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~ 37 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH 37 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 59999999999974 789999999999999998764
No 79
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.24 E-value=1.3e-11 Score=108.91 Aligned_cols=95 Identities=21% Similarity=0.160 Sum_probs=70.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-----------------------------
Q 031654 48 KYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------------------------- 98 (155)
Q Consensus 48 g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------------------------- 98 (155)
|. +|+++|-..--.+..|+ ++.++||+|||+++.+|++-.........
T Consensus 79 g~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~ 155 (830)
T PRK12904 79 GM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGV 155 (830)
T ss_pred CC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 44 78999998887777775 88999999999999999963333322211
Q ss_pred -----HHHHHHHhcCCcEEEEChHHH-HHHHHcCC------CCcccccceEEEEccccccc
Q 031654 99 -----RKELRELARWVDNLMATLRRL-VNLLERGR------VSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 99 -----~~~~~~l~~~~~IlI~TP~~l-~~~l~~~~------~~l~~l~~~lVlDEa~D~ll 147 (155)
....+.-.-.+||++|||++| .++++.+. ..++.+ .++||||| |.||
T Consensus 156 i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~-~~aIvDEa-DsiL 214 (830)
T PRK12904 156 ILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGL-NYAIVDEV-DSIL 214 (830)
T ss_pred EcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhccccc-ceEEEech-hhhe
Confidence 111111113589999999999 89998764 346788 99999999 9998
No 80
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.23 E-value=3e-11 Score=99.24 Aligned_cols=112 Identities=18% Similarity=0.223 Sum_probs=77.9
Q ss_pred HHHHHhHHhC-CCCCC-CHHHHHHHHHHhcC-CcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------------
Q 031654 38 QHLRNKPRTY-KYVKP-TPVQRHATSILVAG-RDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------------- 98 (155)
Q Consensus 38 ~~l~~~l~~~-g~~~p-t~iQ~~~i~~~l~g-~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------------- 98 (155)
..+.++|++. |+.++ ++.|..|+..+..+ +||.|+.|||+||++||.||.|-. .....
T Consensus 5 r~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---~gITIV~SPLiALIkDQiDHL 81 (641)
T KOG0352|consen 5 RKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---GGITIVISPLIALIKDQIDHL 81 (641)
T ss_pred HHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---CCeEEEehHHHHHHHHHHHHH
Confidence 4567788765 77755 89999999999877 799999999999999999987532 11110
Q ss_pred -------------------HHHHHHHh---cCCcEEEEChHHHHHH----HHcCCCCcccccceEEEEcccccccccc--
Q 031654 99 -------------------RKELRELA---RWVDNLMATLRRLVNL----LERGRVSLQMIIRYLALKEAADQTLDMA-- 150 (155)
Q Consensus 99 -------------------~~~~~~l~---~~~~IlI~TP~~l~~~----l~~~~~~l~~l~~~lVlDEa~D~ll~~g-- 150 (155)
.+.+..|. ....+|..||+....- +-++..+-.-+ +|+|+||| |+.-++|
T Consensus 82 ~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L-~Y~vVDEA-HCVSQWGHD 159 (641)
T KOG0352|consen 82 KRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVL-RYIVVDEA-HCVSQWGHD 159 (641)
T ss_pred HhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhcee-eeEEechh-hhHhhhccc
Confidence 22222332 2568999999874211 11222344567 99999999 9999987
Q ss_pred cccC
Q 031654 151 LNQK 154 (155)
Q Consensus 151 f~~~ 154 (155)
|.+|
T Consensus 160 FRPD 163 (641)
T KOG0352|consen 160 FRPD 163 (641)
T ss_pred cCcc
Confidence 4443
No 81
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.20 E-value=1.4e-11 Score=99.81 Aligned_cols=82 Identities=17% Similarity=0.079 Sum_probs=56.0
Q ss_pred cEEEEccCCCCcchhhhhHHHHHHHHhhhch--------------HHHHHHH----------------------------
Q 031654 68 DLMACAQTGSRKTTPFCFPIINGIMREYYSA--------------RKELREL---------------------------- 105 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--------------~~~~~~l---------------------------- 105 (155)
|++++||||||||++|++|++..+....... .+....+
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 6899999999999999999998765432111 0000000
Q ss_pred ------h-----cCCcEEEEChHHHHHHHHcCC----CCc--ccccceEEEEccccccccccc
Q 031654 106 ------A-----RWVDNLMATLRRLVNLLERGR----VSL--QMIIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 106 ------~-----~~~~IlI~TP~~l~~~l~~~~----~~l--~~l~~~lVlDEa~D~ll~~gf 151 (155)
. -.++|+|+||+++...+..+. ..+ -.. +++|+||| |.+.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~-~~iViDE~-h~~~~~~~ 141 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIAN-SLLIFDEV-HFYDEYTL 141 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcC-CEEEEeCC-CCCCHHHH
Confidence 0 125799999999988876521 111 234 68999999 99998654
No 82
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.20 E-value=2.9e-11 Score=105.06 Aligned_cols=107 Identities=16% Similarity=0.100 Sum_probs=81.9
Q ss_pred HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-----------HHHH----
Q 031654 38 QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-----------RKEL---- 102 (155)
Q Consensus 38 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-----------~~~~---- 102 (155)
+...+...--..-.+..-|.......+ |+|+++++|||+|||...+.-+++++....... .+|.
T Consensus 49 ~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~ 127 (746)
T KOG0354|consen 49 ESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFS 127 (746)
T ss_pred hhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHh
Confidence 444443333344467888999888888 999999999999999999999999987665533 2222
Q ss_pred ---------------------HHHhcCCcEEEEChHHHHHHHHcCCCC-cccccceEEEEccccccc
Q 031654 103 ---------------------RELARWVDNLMATLRRLVNLLERGRVS-LQMIIRYLALKEAADQTL 147 (155)
Q Consensus 103 ---------------------~~l~~~~~IlI~TP~~l~~~l~~~~~~-l~~l~~~lVlDEa~D~ll 147 (155)
..+....+|+++||.-|.+.|.++..+ ++.+ .++|+||| |+-.
T Consensus 128 ~~~~~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~f-s~iv~DE~-Hra~ 192 (746)
T KOG0354|consen 128 IYLIPYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDF-SLIVFDEC-HRTS 192 (746)
T ss_pred hccCcccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceE-EEEEEccc-cccc
Confidence 233346899999999999999887544 5999 99999999 8743
No 83
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.16 E-value=4.3e-11 Score=109.69 Aligned_cols=89 Identities=19% Similarity=0.185 Sum_probs=60.8
Q ss_pred HHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhc-h------------------HHHHH---------------H
Q 031654 59 ATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYS-A------------------RKELR---------------E 104 (155)
Q Consensus 59 ~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~-~------------------~~~~~---------------~ 104 (155)
.+..+..+..++++|+||||||. .+|.+..-...... . .+... .
T Consensus 82 Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vrf~~~ 159 (1294)
T PRK11131 82 ILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRFNDQ 159 (1294)
T ss_pred HHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeecCccc
Confidence 44455555677888999999999 57843322111100 0 01110 1
Q ss_pred HhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccc-cccccccc
Q 031654 105 LARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAAD-QTLDMALN 152 (155)
Q Consensus 105 l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D-~ll~~gf~ 152 (155)
...+++|+++|||+|++.+..+. .++++ ++|||||| | ++++.+|.
T Consensus 160 ~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~-~~IIIDEA-HERsLn~DfL 205 (1294)
T PRK11131 160 VSDNTMVKLMTDGILLAEIQQDR-LLMQY-DTIIIDEA-HERSLNIDFI 205 (1294)
T ss_pred cCCCCCEEEEChHHHHHHHhcCC-ccccC-cEEEecCc-cccccccchH
Confidence 12358999999999999998664 49999 99999999 9 68998874
No 84
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.12 E-value=3.2e-10 Score=102.41 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=36.5
Q ss_pred CCCCCCHHHHHHHHHH----hcCCcEEEEccCCCCcchhhhhHHHHHHHH
Q 031654 48 KYVKPTPVQRHATSIL----VAGRDLMACAQTGSRKTTPFCFPIINGIMR 93 (155)
Q Consensus 48 g~~~pt~iQ~~~i~~~----l~g~dvl~~a~TGsGKT~~yllp~l~~l~~ 93 (155)
|| .+.|-|.+....+ ..++.+++.||||+|||++|++|++.....
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~ 303 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK 303 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc
Confidence 45 6799999955544 467899999999999999999999866543
No 85
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.11 E-value=6e-11 Score=105.11 Aligned_cols=95 Identities=20% Similarity=0.161 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------------------------------
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------------------------------- 98 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------------------------------- 98 (155)
+|+++|-..--.+..|+ ++.++||+|||++|.+|++..........
T Consensus 82 ~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~ 159 (908)
T PRK13107 82 RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVA 159 (908)
T ss_pred CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecC
Confidence 67888876554554554 88999999999999999988776554322
Q ss_pred --HHHHHHHhcCCcEEEEChHHH-HHHHHcC-CCCc-----ccccceEEEEccccccccc
Q 031654 99 --RKELRELARWVDNLMATLRRL-VNLLERG-RVSL-----QMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 99 --~~~~~~l~~~~~IlI~TP~~l-~~~l~~~-~~~l-----~~l~~~lVlDEa~D~ll~~ 149 (155)
....+.-.-.|||++|||+++ .++|+.+ .++. ..+ .++|+||| |.||-.
T Consensus 160 ~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~-~~aIvDEv-DsiLiD 217 (908)
T PRK13107 160 GLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPL-HYALIDEV-DSILID 217 (908)
T ss_pred CCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhcccc-ceeeecch-hhhccc
Confidence 112222223799999999999 8988877 4444 778 99999999 999854
No 86
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.09 E-value=3.4e-10 Score=94.44 Aligned_cols=93 Identities=23% Similarity=0.171 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------------------------------
Q 031654 52 PTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA--------------------------------- 98 (155)
Q Consensus 52 pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--------------------------------- 98 (155)
+..-|.......+.+ |++++.|||-|||...++-+.+++.......
T Consensus 16 ~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltG 94 (542)
T COG1111 16 PRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTG 94 (542)
T ss_pred HHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecC
Confidence 344444444444444 9999999999999999999988887766522
Q ss_pred ---HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccc
Q 031654 99 ---RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 99 ---~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll 147 (155)
.+.....+...+|+|+||..+.+-+..+.+++.++ .++|+||| |+=.
T Consensus 95 ev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv-~~lifDEA-HRAv 144 (542)
T COG1111 95 EVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDV-SLLIFDEA-HRAV 144 (542)
T ss_pred CCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHc-eEEEechh-hhcc
Confidence 44456666778999999999999999999999999 99999999 8743
No 87
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.07 E-value=5.6e-10 Score=76.83 Aligned_cols=82 Identities=30% Similarity=0.368 Sum_probs=60.2
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhch-------------------------------------HHHHHHHhcCC
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------------------------------------RKELRELARWV 109 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------------------------------------~~~~~~l~~~~ 109 (155)
+++++.++||+|||..++..+........... ..........+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcCCC
Confidence 47899999999999999888877665311111 11111224578
Q ss_pred cEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccccc
Q 031654 110 DNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMA 150 (155)
Q Consensus 110 ~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~g 150 (155)
+|+++|++.+...+.......... .++|+||+ |.+....
T Consensus 81 ~i~i~t~~~~~~~~~~~~~~~~~~-~~iiiDE~-h~~~~~~ 119 (144)
T cd00046 81 DIVVGTPGRLLDELERLKLSLKKL-DLLILDEA-HRLLNQG 119 (144)
T ss_pred CEEEECcHHHHHHHHcCCcchhcC-CEEEEeCH-HHHhhcc
Confidence 999999999988887766666778 99999999 8887654
No 88
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.02 E-value=2.1e-09 Score=96.73 Aligned_cols=103 Identities=27% Similarity=0.363 Sum_probs=80.8
Q ss_pred HHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------HHHHHH----------
Q 031654 44 PRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------RKELRE---------- 104 (155)
Q Consensus 44 l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------~~~~~~---------- 104 (155)
....+| .+.++|++++-++-+|..|+++||||||||+..-.++...+..+.... ++..++
T Consensus 113 ~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~ 191 (1041)
T COG4581 113 AREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVAD 191 (1041)
T ss_pred HHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhh
Confidence 345677 678999999999999999999999999999997777665555444322 111111
Q ss_pred ----------HhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccc
Q 031654 105 ----------LARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 105 ----------l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
+..++.++|.|-+-|-+++.++...+..+ .+||+||+ |.|=|.
T Consensus 192 ~vGL~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i-~~ViFDEv-Hyi~D~ 244 (1041)
T COG4581 192 MVGLMTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDI-EWVVFDEV-HYIGDR 244 (1041)
T ss_pred hccceecceeeCCCCceEEeeHHHHHHHhccCccccccc-ceEEEEee-eecccc
Confidence 11257899999999999999999999999 99999999 887664
No 89
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.99 E-value=6.1e-10 Score=99.92 Aligned_cols=111 Identities=18% Similarity=0.192 Sum_probs=78.5
Q ss_pred HHHHh-HHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHH------------HHHhhhch-------
Q 031654 39 HLRNK-PRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIING------------IMREYYSA------- 98 (155)
Q Consensus 39 ~l~~~-l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~------------l~~~~~~~------- 98 (155)
++... ...+|.+.+.+-|.++|-..+.|+|+++..|||.||++||.+|++-. |+......
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~~I~ 330 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKKGIP 330 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhcCcc
Confidence 34444 45669999999999999999999999999999999999999986421 11000000
Q ss_pred -------------HHHHHHHhc---CCcEEEEChHHHHHHHH--cCCCCccc---ccceEEEEccccccccccc
Q 031654 99 -------------RKELRELAR---WVDNLMATLRRLVNLLE--RGRVSLQM---IIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 99 -------------~~~~~~l~~---~~~IlI~TP~~l~~~l~--~~~~~l~~---l~~~lVlDEa~D~ll~~gf 151 (155)
....+.+.. .++|+.-||+++...-. ....++.. + .++|+||| |+...+|+
T Consensus 331 a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~l-al~vIDEA-HCVSqWgH 402 (941)
T KOG0351|consen 331 ACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLL-ALFVIDEA-HCVSQWGH 402 (941)
T ss_pred eeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCee-EEEEecHH-HHhhhhcc
Confidence 122233333 48999999999754321 12233444 7 89999999 99999973
No 90
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.95 E-value=3e-09 Score=95.09 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=35.1
Q ss_pred CCCCCCCHHHHHHHHH----HhcCCcEEEEccCCCCcchhhhhHHHHHH
Q 031654 47 YKYVKPTPVQRHATSI----LVAGRDLMACAQTGSRKTTPFCFPIINGI 91 (155)
Q Consensus 47 ~g~~~pt~iQ~~~i~~----~l~g~dvl~~a~TGsGKT~~yllp~l~~l 91 (155)
-|| .+++.|.+.... +..++.+++.|+||||||++|++|++...
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~ 289 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS 289 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc
Confidence 356 579999984443 34668999999999999999999988753
No 91
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.91 E-value=7.6e-09 Score=91.09 Aligned_cols=47 Identities=30% Similarity=0.266 Sum_probs=36.4
Q ss_pred CCCCCCHHHHHHHHHHh---cC------CcEEEEccCCCCcchhhhhHHHHHHHHhh
Q 031654 48 KYVKPTPVQRHATSILV---AG------RDLMACAQTGSRKTTPFCFPIINGIMREY 95 (155)
Q Consensus 48 g~~~pt~iQ~~~i~~~l---~g------~dvl~~a~TGsGKT~~yllp~l~~l~~~~ 95 (155)
|| .+.+-|.+....+. .+ +.+++.||||+|||+|||+|++-......
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~ 78 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEK 78 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcC
Confidence 55 56999999665553 33 67899999999999999999987655443
No 92
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.88 E-value=1.9e-09 Score=99.30 Aligned_cols=102 Identities=20% Similarity=0.202 Sum_probs=67.5
Q ss_pred hCCCCCCCHHHHH---HHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhc-h---------------HHHHHHH-
Q 031654 46 TYKYVKPTPVQRH---ATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYS-A---------------RKELREL- 105 (155)
Q Consensus 46 ~~g~~~pt~iQ~~---~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~-~---------------~~~~~~l- 105 (155)
...|....|+.+. .+..+.++..++++|+||||||. .+|.+..-...... . ......+
T Consensus 59 ~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg 136 (1283)
T TIGR01967 59 EIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELG 136 (1283)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhC
Confidence 3467666777663 34444455678889999999999 46754322111100 0 1111111
Q ss_pred -----------------hcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccc-cccccccc
Q 031654 106 -----------------ARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAAD-QTLDMALN 152 (155)
Q Consensus 106 -----------------~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D-~ll~~gf~ 152 (155)
....+|.++|||.|++.+..+. .++++ ++|||||| | ++++.+|.
T Consensus 137 ~~lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~-~~IIIDEa-HERsL~~D~L 198 (1283)
T TIGR01967 137 TPLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDR-FLSRY-DTIIIDEA-HERSLNIDFL 198 (1283)
T ss_pred CCcceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCc-ccccC-cEEEEcCc-chhhccchhH
Confidence 1246799999999999987654 48999 99999999 9 59888763
No 93
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.88 E-value=1.6e-09 Score=97.95 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=81.0
Q ss_pred ccCCHHHHHhHHhCCCCCCCHHHHHHHHHHhcC-CcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------------
Q 031654 34 AYVPQHLRNKPRTYKYVKPTPVQRHATSILVAG-RDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------------- 98 (155)
Q Consensus 34 ~~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g-~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------------- 98 (155)
.++|.+-..++. |+..++++|.......+.+ .|+++|||||+|||...++.+++.+..+....
T Consensus 294 selP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIA 371 (1674)
T KOG0951|consen 294 SELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIA 371 (1674)
T ss_pred cCCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEe
Confidence 344445455443 6777999999999999988 79999999999999999999999998766522
Q ss_pred ------HHHHHHHh------------------------cCCcEEEEChHHHHHHHHcCCCC---cccccceEEEEccccc
Q 031654 99 ------RKELRELA------------------------RWVDNLMATLRRLVNLLERGRVS---LQMIIRYLALKEAADQ 145 (155)
Q Consensus 99 ------~~~~~~l~------------------------~~~~IlI~TP~~l~~~l~~~~~~---l~~l~~~lVlDEa~D~ 145 (155)
.+....+. .+.+|+||||++ .|.+.++.-+ .+-+ +.+|+||. |.
T Consensus 372 PmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK-~DiITRk~gdraY~qlv-rLlIIDEI-HL 448 (1674)
T KOG0951|consen 372 PMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEK-WDIITRKSGDRAYEQLV-RLLIIDEI-HL 448 (1674)
T ss_pred eHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhhhcceeEEeccch-hhhhhcccCchhHHHHH-HHHhhhhh-hh
Confidence 11111111 247899999999 6777776433 3456 89999999 65
Q ss_pred ccc
Q 031654 146 TLD 148 (155)
Q Consensus 146 ll~ 148 (155)
+-|
T Consensus 449 LhD 451 (1674)
T KOG0951|consen 449 LHD 451 (1674)
T ss_pred ccc
Confidence 544
No 94
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.87 E-value=4.8e-09 Score=76.37 Aligned_cols=95 Identities=18% Similarity=0.107 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHhc-------CCcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------HHH--------------
Q 031654 51 KPTPVQRHATSILVA-------GRDLMACAQTGSRKTTPFCFPIINGIMREYYSA--------RKE-------------- 101 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~-------g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--------~~~-------------- 101 (155)
++++.|.+++..+.. .+.+++.+|||||||.+++..+..... .... .+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~ 80 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--KVLIVAPNISLLEQWYDEFDDFGSEKYNF 80 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--EEEEEESSHHHHHHHHHHHHHHSTTSEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--ceeEecCHHHHHHHHHHHHHHhhhhhhhh
Confidence 478999999998874 689999999999999998754333222 1000 111
Q ss_pred ------------------------HHHHhcCCcEEEEChHHHHHHHHcCC-----------CCcccccceEEEEcccccc
Q 031654 102 ------------------------LRELARWVDNLMATLRRLVNLLERGR-----------VSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 102 ------------------------~~~l~~~~~IlI~TP~~l~~~l~~~~-----------~~l~~l~~~lVlDEa~D~l 146 (155)
...-....+++++|..++........ ...... .++|+||| |++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~vI~DEa-H~~ 158 (184)
T PF04851_consen 81 FEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKF-DLVIIDEA-HHY 158 (184)
T ss_dssp EE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSE-SEEEEETG-GCT
T ss_pred cccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccC-CEEEEehh-hhc
Confidence 11122357999999999988776421 234456 79999999 987
Q ss_pred ccc
Q 031654 147 LDM 149 (155)
Q Consensus 147 l~~ 149 (155)
-..
T Consensus 159 ~~~ 161 (184)
T PF04851_consen 159 PSD 161 (184)
T ss_dssp HHH
T ss_pred CCH
Confidence 654
No 95
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=98.82 E-value=6.2e-09 Score=84.93 Aligned_cols=116 Identities=15% Similarity=0.270 Sum_probs=80.3
Q ss_pred ccCC--HHHHHhHHh-CCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHH------------HHHhhhch
Q 031654 34 AYVP--QHLRNKPRT-YKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIING------------IMREYYSA 98 (155)
Q Consensus 34 ~~l~--~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~------------l~~~~~~~ 98 (155)
+++| .+....|++ +..+++.|.|..+|...+.|+|+++.-|||.||++||.+|++-. +.......
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg~alvi~plislmedqil~ 153 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQILQ 153 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHHHHH
Confidence 4566 555555543 35778899999999999999999999999999999999997631 00000000
Q ss_pred ----------------HHHHH----HHh---cCCcEEEEChHHHHH---HHHc--CCCCcccccceEEEEcccccccccc
Q 031654 99 ----------------RKELR----ELA---RWVDNLMATLRRLVN---LLER--GRVSLQMIIRYLALKEAADQTLDMA 150 (155)
Q Consensus 99 ----------------~~~~~----~l~---~~~~IlI~TP~~l~~---~l~~--~~~~l~~l~~~lVlDEa~D~ll~~g 150 (155)
++... .+. ....++..||+++.. ++++ +.+....+ +.+.+||+ ++--++|
T Consensus 154 lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~-~~iaidev-hccsqwg 231 (695)
T KOG0353|consen 154 LKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFF-KLIAIDEV-HCCSQWG 231 (695)
T ss_pred HHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhccee-EEEeecce-eehhhhC
Confidence 11111 111 246899999999743 2322 34567778 89999999 9988887
Q ss_pred c
Q 031654 151 L 151 (155)
Q Consensus 151 f 151 (155)
+
T Consensus 232 h 232 (695)
T KOG0353|consen 232 H 232 (695)
T ss_pred c
Confidence 3
No 96
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.81 E-value=3.2e-08 Score=86.37 Aligned_cols=51 Identities=25% Similarity=0.369 Sum_probs=41.1
Q ss_pred HhCCCCCCCHHHHHHHHHH----hcCCcEEEEccCCCCcchhhhhHHHHHHHHhh
Q 031654 45 RTYKYVKPTPVQRHATSIL----VAGRDLMACAQTGSRKTTPFCFPIINGIMREY 95 (155)
Q Consensus 45 ~~~g~~~pt~iQ~~~i~~~----l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~ 95 (155)
.......|++.|.+.+..+ .+|+.+++.||||+|||++|++|++.......
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~ 63 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG 63 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC
Confidence 4445668999999988544 35566999999999999999999998875543
No 97
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.77 E-value=3.9e-08 Score=85.50 Aligned_cols=32 Identities=25% Similarity=0.150 Sum_probs=27.7
Q ss_pred HHHhcCCcEEEEccCCCCcchhhhhHHHHHHH
Q 031654 61 SILVAGRDLMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 61 ~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
..+.+++.+++.|+||||||++|++|++..+.
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~ 42 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLK 42 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 44567789999999999999999999988665
No 98
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.66 E-value=5.1e-08 Score=77.58 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=37.0
Q ss_pred CCHHHHH----HHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHh
Q 031654 52 PTPVQRH----ATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMRE 94 (155)
Q Consensus 52 pt~iQ~~----~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~ 94 (155)
|+|.|.+ +...+.+|.++++.||||+|||++|++|++..+...
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~ 55 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSF 55 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhC
Confidence 5999999 555667889999999999999999999999876643
No 99
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.66 E-value=5.1e-08 Score=77.58 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=37.0
Q ss_pred CCHHHHH----HHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHh
Q 031654 52 PTPVQRH----ATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMRE 94 (155)
Q Consensus 52 pt~iQ~~----~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~ 94 (155)
|+|.|.+ +...+.+|.++++.||||+|||++|++|++..+...
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~ 55 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSF 55 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhC
Confidence 5999999 555667889999999999999999999999876643
No 100
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.61 E-value=2.1e-07 Score=82.87 Aligned_cols=101 Identities=19% Similarity=0.246 Sum_probs=75.0
Q ss_pred hCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------HHHHHHHh----------
Q 031654 46 TYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------RKELRELA---------- 106 (155)
Q Consensus 46 ~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------~~~~~~l~---------- 106 (155)
...| +|-+.|++||-++.+|..|+|.|.|.+|||+..-.++...-....... ++..++.+
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~DvgLlT 371 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVGLLT 371 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccceee
Confidence 3345 678999999999999999999999999999986554322111111111 23333333
Q ss_pred ------cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccc
Q 031654 107 ------RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 107 ------~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
..+.+||.|-+-|..++-++.--++++ .++|+||+ |.+=|.
T Consensus 372 GDvqinPeAsCLIMTTEILRsMLYrgadliRDv-E~VIFDEV-HYiND~ 418 (1248)
T KOG0947|consen 372 GDVQINPEASCLIMTTEILRSMLYRGADLIRDV-EFVIFDEV-HYINDV 418 (1248)
T ss_pred cceeeCCCcceEeehHHHHHHHHhcccchhhcc-ceEEEeee-eecccc
Confidence 236889999999999999988888999 99999999 887654
No 101
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.52 E-value=7e-07 Score=82.21 Aligned_cols=94 Identities=15% Similarity=0.215 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHh----cC-CcEEEEccCCCCcchhhhhHHHHHHHHhhhch-----------HHH-------------
Q 031654 51 KPTPVQRHATSILV----AG-RDLMACAQTGSRKTTPFCFPIINGIMREYYSA-----------RKE------------- 101 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l----~g-~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-----------~~~------------- 101 (155)
.+.+.|..||..+. +| +..+++.+||||||.+. +.++.++....... ..|
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 58999999998775 34 68999999999999874 33444444322111 000
Q ss_pred --------HHHH-----hcCCcEEEEChHHHHHHHHcC-----CCCcccccceEEEEccccccc
Q 031654 102 --------LREL-----ARWVDNLMATLRRLVNLLERG-----RVSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 102 --------~~~l-----~~~~~IlI~TP~~l~~~l~~~-----~~~l~~l~~~lVlDEa~D~ll 147 (155)
...+ .....|+|+|...+...+... .+.+... .++|+||| |+-.
T Consensus 492 ~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~f-dlIIiDEa-HRs~ 553 (1123)
T PRK11448 492 QTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQY-DCIIVDEA-HRGY 553 (1123)
T ss_pred cchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcc-cEEEEECC-CCCC
Confidence 0111 124689999999987765321 2456788 89999999 9853
No 102
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.52 E-value=3.8e-07 Score=80.53 Aligned_cols=47 Identities=23% Similarity=0.190 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHH----hcCCcEEEEccCCCCcchhhhhHHHHHHHHh
Q 031654 48 KYVKPTPVQRHATSIL----VAGRDLMACAQTGSRKTTPFCFPIINGIMRE 94 (155)
Q Consensus 48 g~~~pt~iQ~~~i~~~----l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~ 94 (155)
-|..++|.|.+.+..+ ..|.+.++.||||+|||++-|.|++......
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~ 57 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK 57 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc
Confidence 4677799999876544 5779999999999999999999999876543
No 103
>PRK09694 helicase Cas3; Provisional
Probab=98.50 E-value=3.1e-07 Score=82.52 Aligned_cols=41 Identities=20% Similarity=0.059 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHH
Q 031654 49 YVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIIN 89 (155)
Q Consensus 49 ~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~ 89 (155)
...|+|+|+.+......+.-+++.||||+|||.+.+..+..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~ 324 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWR 324 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 44899999988654445677999999999999998765543
No 104
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.49 E-value=1.9e-07 Score=79.55 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=45.0
Q ss_pred EEEccCCCCcchhhhhHHHHHHHHhhhch------------------------------------HHHHHHHh-cCCcEE
Q 031654 70 MACAQTGSRKTTPFCFPIINGIMREYYSA------------------------------------RKELRELA-RWVDNL 112 (155)
Q Consensus 70 l~~a~TGsGKT~~yllp~l~~l~~~~~~~------------------------------------~~~~~~l~-~~~~Il 112 (155)
++.|+||||||.+|+..+...+....... .+....+. ..++|+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IV 80 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVV 80 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 46899999999999765544433221111 11122222 357999
Q ss_pred EEChHHHHHHHHcCCCCcccccceEEEEccccccc
Q 031654 113 MATLRRLVNLLERGRVSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 113 I~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll 147 (155)
|||+..+. ..+.++ .++||||+ |...
T Consensus 81 VGTrsalf-------~p~~~l-~lIIVDEe-h~~s 106 (505)
T TIGR00595 81 IGTRSALF-------LPFKNL-GLIIVDEE-HDSS 106 (505)
T ss_pred ECChHHHc-------CcccCC-CEEEEECC-Cccc
Confidence 99998753 357899 99999999 7543
No 105
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.43 E-value=2e-07 Score=78.18 Aligned_cols=98 Identities=17% Similarity=0.099 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHhc----CCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-------HHHHH-HH------------
Q 031654 50 VKPTPVQRHATSILVA----GRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------RKELR-EL------------ 105 (155)
Q Consensus 50 ~~pt~iQ~~~i~~~l~----g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------~~~~~-~l------------ 105 (155)
..+++.|.+++..+.+ ++..+++.|||+|||..++-.+.. +... ... ..|.. .+
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~-~~~~-~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~ 112 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE-LKRS-TLVLVPTKELLDQWAEALKKFLLLNDEIGI 112 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH-hcCC-EEEEECcHHHHHHHHHHHHHhcCCccccce
Confidence 3689999999999988 899999999999999987544322 2111 000 12221 00
Q ss_pred -h----c-C-CcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccccc
Q 031654 106 -A----R-W-VDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 106 -~----~-~-~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf 151 (155)
. + . ..|.|+|-..+........+..+.. .++|+||+ |++....|
T Consensus 113 ~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~-~liI~DE~-Hh~~a~~~ 163 (442)
T COG1061 113 YGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEF-GLIIFDEV-HHLPAPSY 163 (442)
T ss_pred ecCceeccCCCcEEEEEhHHHhhhhhhhhhccccc-CEEEEEcc-ccCCcHHH
Confidence 0 0 1 2599999877655321123344467 89999999 99987654
No 106
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.42 E-value=7.1e-07 Score=77.99 Aligned_cols=97 Identities=21% Similarity=0.247 Sum_probs=80.2
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------HHHHHHHhc--------------
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------RKELRELAR-------------- 107 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------~~~~~~l~~-------------- 107 (155)
.+-|.|+.||..+-++..|+|.|-|.+|||.+.-.++...+..+.... ++..+.+..
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDVTI 208 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDVTI 208 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecceee
Confidence 467899999999999999999999999999998888877776554433 333343331
Q ss_pred --CCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccc
Q 031654 108 --WVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 108 --~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
.+.-+|.|-+-|..++-++.--+..+ .|+|+||+ |.|-|.
T Consensus 209 nP~ASCLVMTTEILRsMLYRGSEvmrEV-aWVIFDEI-HYMRDk 250 (1041)
T KOG0948|consen 209 NPDASCLVMTTEILRSMLYRGSEVMREV-AWVIFDEI-HYMRDK 250 (1041)
T ss_pred CCCCceeeeHHHHHHHHHhccchHhhee-eeEEeeee-hhcccc
Confidence 35679999999999999999889999 99999999 999775
No 107
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.41 E-value=4.8e-07 Score=71.19 Aligned_cols=101 Identities=22% Similarity=0.173 Sum_probs=66.6
Q ss_pred HhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-----------------------
Q 031654 42 NKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------------------- 98 (155)
Q Consensus 42 ~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------------------- 98 (155)
++.++.--.+|+++|..++-.+..|+ ++.-.||-|||++..+|++-.........
T Consensus 68 ea~~r~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 68 EAARRTLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp HHHHHHTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 34433323489999999998887777 88999999999999988776665543322
Q ss_pred ------------HHHHHHHhcCCcEEEEChHHHH-HHHHcCC------CCcccccceEEEEccccccc
Q 031654 99 ------------RKELRELARWVDNLMATLRRLV-NLLERGR------VSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 99 ------------~~~~~~l~~~~~IlI~TP~~l~-~~l~~~~------~~l~~l~~~lVlDEa~D~ll 147 (155)
..+.+ -...++|+.+|...+. ++|+.+. ...... .++||||| |.||
T Consensus 146 Glsv~~~~~~~~~~~r~-~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~-~~~ivDEv-Ds~L 210 (266)
T PF07517_consen 146 GLSVGIITSDMSSEERR-EAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGF-DFAIVDEV-DSIL 210 (266)
T ss_dssp T--EEEEETTTEHHHHH-HHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSS-SEEEECTH-HHHT
T ss_pred hhccccCccccCHHHHH-HHHhCcccccccchhhHHHHHHHHhhccchhccCCC-CEEEEecc-ceEE
Confidence 12212 2234899999998874 3454431 124677 89999999 9887
No 108
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.34 E-value=1.6e-06 Score=75.12 Aligned_cols=99 Identities=19% Similarity=0.263 Sum_probs=76.4
Q ss_pred HHHhHHhCCCCCCCHHHHHHHHHHhcC------CcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------------
Q 031654 40 LRNKPRTYKYVKPTPVQRHATSILVAG------RDLMACAQTGSRKTTPFCFPIINGIMREYYSA--------------- 98 (155)
Q Consensus 40 l~~~l~~~g~~~pt~iQ~~~i~~~l~g------~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--------------- 98 (155)
+.+.++.+.| ++|.-|++++..|... -+=++++--|||||+..++.++..+..+....
T Consensus 252 ~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~ 330 (677)
T COG1200 252 LAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYES 330 (677)
T ss_pred HHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHH
Confidence 3445577788 7899999999999755 25688999999999999999998777644333
Q ss_pred ------------------------HHHHHHHhcC-CcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccc
Q 031654 99 ------------------------RKELRELARW-VDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 99 ------------------------~~~~~~l~~~-~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~l 146 (155)
......+.+| .||+|||..-+ ...+.+.++ .++|+||= |+.
T Consensus 331 ~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~L-gLVIiDEQ-HRF 396 (677)
T COG1200 331 LRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEFHNL-GLVIIDEQ-HRF 396 (677)
T ss_pred HHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceeecce-eEEEEecc-ccc
Confidence 3444555555 99999997543 456789999 99999998 763
No 109
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.34 E-value=1.5e-07 Score=85.54 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=74.5
Q ss_pred CCCCcccccCC-HHHHHhHHhCCCCCCCHHHHHHHHHHhcC-CcEEEEccCCCCcchhhhhHHHHHHHHhhhch------
Q 031654 27 SSPAARFAYVP-QHLRNKPRTYKYVKPTPVQRHATSILVAG-RDLMACAQTGSRKTTPFCFPIINGIMREYYSA------ 98 (155)
Q Consensus 27 p~~~~~f~~l~-~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g-~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------ 98 (155)
|.++..|..+| ..+.+-...--|...+|+|.++++.+.+. .++++.+|+|||||.|.-+.++..-......-
T Consensus 1118 pt~lld~~~~~~~~l~N~~~~~lf~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~ 1197 (1674)
T KOG0951|consen 1118 PTELLDLQPLPVSALRNPSFETLFQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEE 1197 (1674)
T ss_pred CchhhhccccchhccCCcchhhhccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHH
Confidence 44555566666 33333322223555699999999999876 67999999999999998887765110000000
Q ss_pred ---------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccc
Q 031654 99 ---------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 99 ---------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
...-..+....+|+|+||++ .+.++ +.+.+ ++.|.||+ +|+.
T Consensus 1198 i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~vii~tpe~-~d~lq----~iQ~v-~l~i~d~l--h~ig 1266 (1674)
T KOG0951|consen 1198 IADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQKGQVIISTPEQ-WDLLQ----SIQQV-DLFIVDEL--HLIG 1266 (1674)
T ss_pred HHHHHHHHHHHhhccccCceEEecCCccccchHHhhhcceEEechhH-HHHHh----hhhhc-ceEeeehh--hhhc
Confidence 11112233457999999999 45553 77888 99999999 5554
No 110
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.30 E-value=9.3e-07 Score=79.02 Aligned_cols=93 Identities=18% Similarity=0.120 Sum_probs=64.5
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-------------------------------
Q 031654 50 VKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA------------------------------- 98 (155)
Q Consensus 50 ~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------------------------------- 98 (155)
-+|+++|-..--.+..| -++.-.||+|||++..+|++-.........
T Consensus 81 m~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~ 158 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVT 158 (913)
T ss_pred CCcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEEC
Confidence 47888988765455444 377899999999999999887666554332
Q ss_pred ----HHHHHHHhcCCcEEEEChHHH-HHHHHcCC------CCcccccceEEEEccccccc
Q 031654 99 ----RKELRELARWVDNLMATLRRL-VNLLERGR------VSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 99 ----~~~~~~l~~~~~IlI~TP~~l-~~~l~~~~------~~l~~l~~~lVlDEa~D~ll 147 (155)
..+.+.. -.+||++||..-+ .|+|+.+. .....+ .+.|+||+ |.+|
T Consensus 159 ~~~~~~err~~-Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l-~~aIVDEv-DsiL 215 (913)
T PRK13103 159 PFQPPEEKRAA-YAADITYGTNNEFGFDYLRDNMAFSLDDKFQREL-NFAVIDEV-DSIL 215 (913)
T ss_pred CCCCHHHHHHH-hcCCEEEEcccccccchhhccceechhhhccccc-ceeEechh-hhee
Confidence 1222222 2499999999886 34444331 124778 89999999 9987
No 111
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.27 E-value=1.5e-06 Score=77.19 Aligned_cols=104 Identities=20% Similarity=0.200 Sum_probs=72.3
Q ss_pred HHHHhHHhC-CCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-------------------
Q 031654 39 HLRNKPRTY-KYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA------------------- 98 (155)
Q Consensus 39 ~l~~~l~~~-g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------------------- 98 (155)
-+.++.++. |. +|+++|-.+--.+..|+ ++.-.||+|||++..+|++-.........
T Consensus 68 ~vrEa~~R~~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~ 144 (796)
T PRK12906 68 VAREGAKRVLGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGEL 144 (796)
T ss_pred HHHHHHHHHhCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHH
Confidence 334444333 43 78999999877777777 88999999999999999888777655433
Q ss_pred ---------------HHHHHHHhcCCcEEEEChHHHH-HHHHcCC------CCcccccceEEEEccccccc
Q 031654 99 ---------------RKELRELARWVDNLMATLRRLV-NLLERGR------VSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 99 ---------------~~~~~~l~~~~~IlI~TP~~l~-~~l~~~~------~~l~~l~~~lVlDEa~D~ll 147 (155)
....+.-.-.|||+.+|...+- ++|+.+. .....+ .+.||||+ |.||
T Consensus 145 ~~~LGl~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~-~~aIvDEv-DSiL 213 (796)
T PRK12906 145 YRWLGLTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPL-NYAIVDEV-DSIL 213 (796)
T ss_pred HHhcCCeEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCc-ceeeeccc-hhee
Confidence 1222222336899999997763 3444321 123567 89999999 9987
No 112
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.26 E-value=1.3e-06 Score=65.68 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHhcCCc-EEEEccCCCCcchh
Q 031654 51 KPTPVQRHATSILVAGRD-LMACAQTGSRKTTP 82 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~d-vl~~a~TGsGKT~~ 82 (155)
++++-|..|+..+++..+ .++.||+|||||..
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~ 33 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT 33 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH
Confidence 357899999999999999 99999999999943
No 113
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.24 E-value=3.1e-06 Score=75.61 Aligned_cols=93 Identities=23% Similarity=0.174 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------------------------------
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------------------------------- 98 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------------------------------- 98 (155)
+|+++|-..--.+..|+ ++...||.|||+++.+|++-.........
T Consensus 85 r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~ 162 (939)
T PRK12902 85 RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQ 162 (939)
T ss_pred CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECC
Confidence 78889887665555554 78999999999999999887666544332
Q ss_pred --HHHHHHHhcCCcEEEEChHHH-----HHHHHc--CCCCcccccceEEEEccccccc
Q 031654 99 --RKELRELARWVDNLMATLRRL-----VNLLER--GRVSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 99 --~~~~~~l~~~~~IlI~TP~~l-----~~~l~~--~~~~l~~l~~~lVlDEa~D~ll 147 (155)
....+...-.|||+.+|+..+ .+.+.. .......+ .|.||||| |.||
T Consensus 163 ~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~-~faIVDEv-DSIL 218 (939)
T PRK12902 163 DMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPF-NYCVIDEV-DSIL 218 (939)
T ss_pred CCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCcc-ceEEEecc-ccee
Confidence 233333445799999999887 343332 12345777 89999999 9987
No 114
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.16 E-value=3.1e-06 Score=74.31 Aligned_cols=96 Identities=21% Similarity=0.146 Sum_probs=68.2
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-----------------------------
Q 031654 48 KYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------------------------- 98 (155)
Q Consensus 48 g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------------------------- 98 (155)
|. +|+.+|-.+.-.++.|+ ++.-.||+|||++..+|++-.........
T Consensus 76 g~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~ 152 (764)
T PRK12326 76 GL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGW 152 (764)
T ss_pred CC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 44 78999999998888885 67899999999999999887776544332
Q ss_pred -----HHHHHHHhcCCcEEEEChHHH-HHHHHcC------CCCcccccceEEEEcccccccc
Q 031654 99 -----RKELRELARWVDNLMATLRRL-VNLLERG------RVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 99 -----~~~~~~l~~~~~IlI~TP~~l-~~~l~~~------~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
....+.-.-.|||+.+|...+ .++|+.+ ......+ .+.|+||+ |.||=
T Consensus 153 i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~-~faIVDEv-DSiLI 212 (764)
T PRK12326 153 ITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNP-DVAIIDEA-DSVLV 212 (764)
T ss_pred ECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCcc-ceeeecch-hhhee
Confidence 111122223689999999765 2333332 1234567 89999999 99883
No 115
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.13 E-value=1.9e-06 Score=64.78 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHhcCC--cEEEEccCCCCcchh
Q 031654 51 KPTPVQRHATSILVAGR--DLMACAQTGSRKTTP 82 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~--dvl~~a~TGsGKT~~ 82 (155)
++++-|..++..++.+. =++++++.|||||.+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~ 34 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL 34 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH
Confidence 36889999999997654 477789999999974
No 116
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.13 E-value=5.6e-06 Score=62.84 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHH
Q 031654 49 YVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMR 93 (155)
Q Consensus 49 ~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~ 93 (155)
++..|+-|..++..++...-+++.+|.|||||+..+...++.+..
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~ 46 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE 46 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 445689999999999988889999999999999988888887765
No 117
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.10 E-value=2.2e-06 Score=75.65 Aligned_cols=97 Identities=11% Similarity=0.103 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHh-cC--CcEEEEccCCCCcchhhhhHHHHHHHHhhhch-----------HHHHHHHh----------
Q 031654 51 KPTPVQRHATSILV-AG--RDLMACAQTGSRKTTPFCFPIINGIMREYYSA-----------RKELRELA---------- 106 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l-~g--~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-----------~~~~~~l~---------- 106 (155)
.+.|.|.+++..++ +| +.-+++.|||+|||+..+..+. ++.. .... ..+.....
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l~k-~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~ 332 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TVKK-SCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRF 332 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-HhCC-CEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 47889999999887 44 4789999999999999765443 2210 0000 11222110
Q ss_pred ---------cCCcEEEEChHHHHHHHHcC--------CCCcccccceEEEEccccccccccc
Q 031654 107 ---------RWVDNLMATLRRLVNLLERG--------RVSLQMIIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 107 ---------~~~~IlI~TP~~l~~~l~~~--------~~~l~~l~~~lVlDEa~D~ll~~gf 151 (155)
....|+|+|...+.....+. .+.-... .++|+||| |++-...|
T Consensus 333 tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~-gLII~DEv-H~lpA~~f 392 (732)
T TIGR00603 333 TSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREW-GLILLDEV-HVVPAAMF 392 (732)
T ss_pred ecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccC-CEEEEEcc-ccccHHHH
Confidence 12579999997654322221 1222356 78999999 98854433
No 118
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.07 E-value=8.6e-06 Score=72.21 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHh----cCCcEEEEccCCCCcchhhhhHHHHHHHHh
Q 031654 51 KPTPVQRHATSILV----AGRDLMACAQTGSRKTTPFCFPIINGIMRE 94 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l----~g~dvl~~a~TGsGKT~~yllp~l~~l~~~ 94 (155)
.|++.|...+..++ ++.+.+..+|||||||++-+...|......
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~ 68 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHL 68 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHh
Confidence 57999988766554 557899999999999999988777765543
No 119
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.06 E-value=9.4e-06 Score=72.87 Aligned_cols=94 Identities=18% Similarity=0.117 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------------------------------
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------------------------------- 98 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------------------------------- 98 (155)
.|..+|.+.+-.+-.+..++++|||.+|||.+--..+=..+.......
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~s 590 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVS 590 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchh
Confidence 688999999999999999999999999999863222222222211111
Q ss_pred --HHHHHHHh---cCCcEEEEChHHHHHHHHc---CCCCcccccceEEEEcccccc
Q 031654 99 --RKELRELA---RWVDNLMATLRRLVNLLER---GRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 99 --~~~~~~l~---~~~~IlI~TP~~l~~~l~~---~~~~l~~l~~~lVlDEa~D~l 146 (155)
...-++.+ -.|+|+|+-|+.+..++.. ......++ +|+|+||+ +.+
T Consensus 591 l~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerI-RyiIfDEV-H~i 644 (1330)
T KOG0949|consen 591 LLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERI-RYIIFDEV-HLI 644 (1330)
T ss_pred hHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcc-eEEEechh-hhc
Confidence 11111111 2699999999999999887 34567899 99999999 765
No 120
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.06 E-value=2e-05 Score=69.46 Aligned_cols=94 Identities=18% Similarity=0.175 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHh----c------CCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------H------------
Q 031654 52 PTPVQRHATSILV----A------GRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------R------------ 99 (155)
Q Consensus 52 pt~iQ~~~i~~~l----~------g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------~------------ 99 (155)
|.+.|..|+..+. + .+..+++.+||||||+..+.-+...+....... .
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK 318 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC
Confidence 6778988887663 2 257899999999999886544433221111111 0
Q ss_pred ---------HHH-HHHhc-CCcEEEEChHHHHHHHHcC--CCC--cccccceEEEEcccccccc
Q 031654 100 ---------KEL-RELAR-WVDNLMATLRRLVNLLERG--RVS--LQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 100 ---------~~~-~~l~~-~~~IlI~TP~~l~~~l~~~--~~~--l~~l~~~lVlDEa~D~ll~ 148 (155)
... ..+.. ...|+|+|...+...+... .+. ..++ ++|+||| |+.--
T Consensus 319 ~~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~--lvIvDEa-Hrs~~ 379 (667)
T TIGR00348 319 DCAERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEV--VVIFDEA-HRSQY 379 (667)
T ss_pred CCCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCE--EEEEEcC-ccccc
Confidence 111 11111 3689999999987644331 111 1223 7999999 98653
No 121
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.01 E-value=7.2e-06 Score=73.16 Aligned_cols=103 Identities=21% Similarity=0.132 Sum_probs=66.8
Q ss_pred HHHhHH-hCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------------------
Q 031654 40 LRNKPR-TYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------------------- 98 (155)
Q Consensus 40 l~~~l~-~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------------------- 98 (155)
+.++.. .+|. +|+++|-.+--.+. +.-++...||.|||+++.+|++-.........
T Consensus 65 vrEa~~R~lG~-r~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 65 TREASFRTLGL-RHFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred HHHHHHHHhCC-CCCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHH
Confidence 334443 3355 58999988654443 45688999999999999999865444333221
Q ss_pred --------------HHHHHHHhcCCcEEEEChHHHH-HHHHcCC------CCcccccceEEEEccccccc
Q 031654 99 --------------RKELRELARWVDNLMATLRRLV-NLLERGR------VSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 99 --------------~~~~~~l~~~~~IlI~TP~~l~-~~l~~~~------~~l~~l~~~lVlDEa~D~ll 147 (155)
....+.-.-.|||+.+|...+- ++|+.+. .....+ .+.|+||| |.||
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~-~faIVDEv-DSiL 209 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPF-NYCIIDEV-DSIL 209 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhcccc-ceeeeecc-hhhe
Confidence 1222233346899999997542 3443321 234667 89999999 9987
No 122
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.01 E-value=4.6e-05 Score=68.80 Aligned_cols=109 Identities=19% Similarity=0.159 Sum_probs=70.1
Q ss_pred HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-------------------
Q 031654 38 QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA------------------- 98 (155)
Q Consensus 38 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------------------- 98 (155)
+++-+.+++....+|+..|+.--..++.|++.-+.||||.|||..-++-.+-...+++...
T Consensus 69 e~~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~ 148 (1187)
T COG1110 69 EEFEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKF 148 (1187)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHH
Confidence 4444555555333999999998899999999999999999999753332222111111100
Q ss_pred ----------------------HHHHHHHhc-CCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccccc
Q 031654 99 ----------------------RKELRELAR-WVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMA 150 (155)
Q Consensus 99 ----------------------~~~~~~l~~-~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~g 150 (155)
......+.+ +.||+|+|..-|..-+.. +.--+. +++.+|++ |.+|..+
T Consensus 149 ~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kF-dfifVDDV-DA~Lkas 219 (1187)
T COG1110 149 AEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKF-DFIFVDDV-DAILKAS 219 (1187)
T ss_pred HhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCC-CEEEEccH-HHHHhcc
Confidence 122233333 699999998776544432 111356 78999999 9988654
No 123
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.88 E-value=5.3e-05 Score=65.09 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHhcCCc-EEEEccCCCCcchhhhhHHHHHHH
Q 031654 51 KPTPVQRHATSILVAGRD-LMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~d-vl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
.+.+-|..|+....+.++ .++++|+|||||..-..-+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk 227 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK 227 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH
Confidence 567889999999988865 677899999999876544444333
No 124
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.86 E-value=4.2e-05 Score=68.41 Aligned_cols=103 Identities=20% Similarity=0.179 Sum_probs=70.1
Q ss_pred HHHhHHh-CCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------------------
Q 031654 40 LRNKPRT-YKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------------------- 98 (155)
Q Consensus 40 l~~~l~~-~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------------------- 98 (155)
+.++.++ +|. +|+++|-..--.+..|+ ++.-.||-|||++..+|++-.........
T Consensus 67 vREA~~R~lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 67 AREATKRVLGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred HHHHHHHHhCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHH
Confidence 3344433 354 88999998876666664 68999999999999999876555443322
Q ss_pred --------------HHHHHHHhcCCcEEEEChHHH-HHHHHcCC------CCcccccceEEEEccccccc
Q 031654 99 --------------RKELRELARWVDNLMATLRRL-VNLLERGR------VSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 99 --------------~~~~~~l~~~~~IlI~TP~~l-~~~l~~~~------~~l~~l~~~lVlDEa~D~ll 147 (155)
....+.-.-.|||..+|...+ .++|+.+. .....+ .|.|+||+ |.+|
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~-~faIVDEV-DSIL 211 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGL-NFCLIDEV-DSIL 211 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCccc-ceeeeccc-hhee
Confidence 112222234699999999776 34454332 224667 89999999 9987
No 125
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.85 E-value=0.00014 Score=66.45 Aligned_cols=95 Identities=18% Similarity=0.075 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHhcCCc-EEEEccCCCCcchhhhhHHHHHHHHhhhch------HHHHHHHhcCCcEEEEChHHHHHHH
Q 031654 51 KPTPVQRHATSILVAGRD-LMACAQTGSRKTTPFCFPIINGIMREYYSA------RKELRELARWVDNLMATLRRLVNLL 123 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~d-vl~~a~TGsGKT~~yllp~l~~l~~~~~~~------~~~~~~l~~~~~IlI~TP~~l~~~l 123 (155)
.+++-|..|+..++.+++ +++.++.|||||.. +-.+...+....... ......+.....+--.|-.++..-.
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~ 424 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGW 424 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhh
Confidence 689999999999998765 68899999999975 233333332211111 3333444433333333433332222
Q ss_pred HcCCCCcccccceEEEEccccccccc
Q 031654 124 ERGRVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 124 ~~~~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
..+...+... .+|||||| -|++.
T Consensus 425 ~~~~~~l~~~-~vlIVDEA--SMv~~ 447 (988)
T PRK13889 425 GQGRDLLTSR-DVLVIDEA--GMVGT 447 (988)
T ss_pred cccccccccC-cEEEEECc--ccCCH
Confidence 2233346666 79999999 56653
No 126
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=97.82 E-value=1.5e-05 Score=71.24 Aligned_cols=112 Identities=13% Similarity=0.155 Sum_probs=79.2
Q ss_pred CHHHHHh-HHhCCCCCCCHHHHHHH--HHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------HHHHH
Q 031654 37 PQHLRNK-PRTYKYVKPTPVQRHAT--SILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------RKELR 103 (155)
Q Consensus 37 ~~~l~~~-l~~~g~~~pt~iQ~~~i--~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------~~~~~ 103 (155)
++.+... .+..|....+.+|..++ |.++.++|++..+||+.|||++.-+-++..+....... .+...
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~ 287 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKIS 287 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHh
Confidence 3444443 45668999999999987 67889999999999999999999888887776555444 11111
Q ss_pred H-----------------------HhcCCcEEEEChHHHHHHHHc--CCCCcccccceEEEEcccccccccc
Q 031654 104 E-----------------------LARWVDNLMATLRRLVNLLER--GRVSLQMIIRYLALKEAADQTLDMA 150 (155)
Q Consensus 104 ~-----------------------l~~~~~IlI~TP~~l~~~l~~--~~~~l~~l~~~lVlDEa~D~ll~~g 150 (155)
. ..+.-++.|||-++-.-++++ ..=.+..+ .++|+||. |.+.|.|
T Consensus 288 ~l~~~~~~~G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~-g~vvVdEl-hmi~d~~ 357 (1008)
T KOG0950|consen 288 ALSPFSIDLGFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFL-GMVVVDEL-HMIGDKG 357 (1008)
T ss_pred hhhhhccccCCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCcccc-CcEEEeee-eeeeccc
Confidence 1 112358999999986555543 12246677 89999999 7666654
No 127
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=97.81 E-value=4.9e-05 Score=61.64 Aligned_cols=86 Identities=22% Similarity=0.216 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHH----hcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------HHHHHHH----h------
Q 031654 51 KPTPVQRHATSIL----VAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------RKELREL----A------ 106 (155)
Q Consensus 51 ~pt~iQ~~~i~~~----l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------~~~~~~l----~------ 106 (155)
.+|+.|+.+-..+ .+.+|.++.|-||+|||-- +.+.++....++... .+....+ .
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~ 175 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDL 175 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeee
Confidence 6899999876655 4568999999999999975 345555555544332 1111111 1
Q ss_pred --------cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccc
Q 031654 107 --------RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 107 --------~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~l 146 (155)
-..+++|+|--+|+.+-. .. +++++||+ |..
T Consensus 176 Lyg~S~~~fr~plvVaTtHQLlrFk~-------aF-D~liIDEV-DAF 214 (441)
T COG4098 176 LYGDSDSYFRAPLVVATTHQLLRFKQ-------AF-DLLIIDEV-DAF 214 (441)
T ss_pred EecCCchhccccEEEEehHHHHHHHh-------hc-cEEEEecc-ccc
Confidence 125788888877776644 56 88999999 864
No 128
>PRK10536 hypothetical protein; Provisional
Probab=97.76 E-value=0.00021 Score=56.07 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=38.4
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHH
Q 031654 47 YKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMR 93 (155)
Q Consensus 47 ~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~ 93 (155)
.++..-+..|...+..+.++..+++.+++|||||+..+.-.++.+..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~ 101 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH 101 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 35666788999999999988899999999999999877666655533
No 129
>COG4889 Predicted helicase [General function prediction only]
Probab=97.65 E-value=9.9e-05 Score=66.14 Aligned_cols=112 Identities=24% Similarity=0.293 Sum_probs=78.0
Q ss_pred cccccCCH-HHHHhHHhCCCCCCCHHHHHHHHHHhcC-------CcEEEEccCCCCcchh--------------hhhHHH
Q 031654 31 ARFAYVPQ-HLRNKPRTYKYVKPTPVQRHATSILVAG-------RDLMACAQTGSRKTTP--------------FCFPII 88 (155)
Q Consensus 31 ~~f~~l~~-~l~~~l~~~g~~~pt~iQ~~~i~~~l~g-------~dvl~~a~TGsGKT~~--------------yllp~l 88 (155)
-.|+.+.| ++..+|.-..=++|.|+|+.||...++| +=+++| |+|||.. ||+|.+
T Consensus 140 IDW~~f~p~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAc---GTGKTfTsLkisEala~~~iL~LvPSI 216 (1518)
T COG4889 140 IDWDIFDPTELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMAC---GTGKTFTSLKISEALAAARILFLVPSI 216 (1518)
T ss_pred CChhhcCccccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEec---CCCccchHHHHHHHHhhhheEeecchH
Confidence 45776663 7777776666779999999999998765 334433 6899976 777888
Q ss_pred HHHHHhhhch--------------------------------------------HHHHHHHhcCCcEEEEChHHHHHHHH
Q 031654 89 NGIMREYYSA--------------------------------------------RKELRELARWVDNLMATLRRLVNLLE 124 (155)
Q Consensus 89 ~~l~~~~~~~--------------------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~ 124 (155)
+.|.+....- ....+.-.++--|+.+|-..+...-.
T Consensus 217 sLLsQTlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~e 296 (1518)
T COG4889 217 SLLSQTLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKE 296 (1518)
T ss_pred HHHHHHHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHH
Confidence 7776544322 11112223466788999888776655
Q ss_pred cCCCCcccccceEEEEccccccc
Q 031654 125 RGRVSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 125 ~~~~~l~~l~~~lVlDEa~D~ll 147 (155)
....-+..+ .++|-||| |+-.
T Consensus 297 AQe~G~~~f-DliicDEA-HRTt 317 (1518)
T COG4889 297 AQEAGLDEF-DLIICDEA-HRTT 317 (1518)
T ss_pred HHHcCCCCc-cEEEecch-hccc
Confidence 555567788 89999999 9864
No 130
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00015 Score=64.30 Aligned_cols=85 Identities=14% Similarity=0.123 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHHhcC----CcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------------------------
Q 031654 50 VKPTPVQRHATSILVAG----RDLMACAQTGSRKTTPFCFPIINGIMREYYSA--------------------------- 98 (155)
Q Consensus 50 ~~pt~iQ~~~i~~~l~g----~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--------------------------- 98 (155)
..+++-|+.+...+... +-.++.+.||||||-+|+=.+-..+...+..-
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vl 276 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVL 276 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhh
Confidence 46788999999988655 67899999999999999655555444432211
Q ss_pred ---------HHHHHHH-hcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcc
Q 031654 99 ---------RKELREL-ARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEA 142 (155)
Q Consensus 99 ---------~~~~~~l-~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa 142 (155)
.+..+.. .....|+|||=--+ ...++++ .++|+||=
T Consensus 277 HS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~L-GLIIvDEE 322 (730)
T COG1198 277 HSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNL-GLIIVDEE 322 (730)
T ss_pred cccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhc-cEEEEecc
Confidence 2222222 24688999983221 1358899 99999997
No 131
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.63 E-value=0.00022 Score=52.85 Aligned_cols=64 Identities=23% Similarity=0.315 Sum_probs=42.1
Q ss_pred hcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHcCC---------CCccccc
Q 031654 64 VAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLERGR---------VSLQMII 134 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~~~---------~~l~~l~ 134 (155)
-+++++++.|++|+|||... ..+...+. ..+..++..+-..|++.++... -.+.++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa-~ai~~~~~-------------~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~- 109 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLA-VAIANEAI-------------RKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRV- 109 (178)
T ss_dssp SC--EEEEEESTTSSHHHHH-HHHHHHHH-------------HTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTS-
T ss_pred ccCeEEEEEhhHhHHHHHHH-HHHHHHhc-------------cCCcceeEeecCceeccccccccccchhhhcCccccc-
Confidence 46789999999999999853 23333222 2456677777777777776542 126778
Q ss_pred ceEEEEcc
Q 031654 135 RYLALKEA 142 (155)
Q Consensus 135 ~~lVlDEa 142 (155)
++|||||.
T Consensus 110 dlLilDDl 117 (178)
T PF01695_consen 110 DLLILDDL 117 (178)
T ss_dssp SCEEEETC
T ss_pred cEeccccc
Confidence 99999998
No 132
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.63 E-value=0.00012 Score=64.95 Aligned_cols=92 Identities=16% Similarity=0.244 Sum_probs=65.9
Q ss_pred CCCHHHHHHHHHH----hcC-CcEEEEccCCCCcchhhhhHHHHHHHHhhhch-----------HHHHH----HH-----
Q 031654 51 KPTPVQRHATSIL----VAG-RDLMACAQTGSRKTTPFCFPIINGIMREYYSA-----------RKELR----EL----- 105 (155)
Q Consensus 51 ~pt~iQ~~~i~~~----l~g-~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-----------~~~~~----~l----- 105 (155)
.|..-|..||..+ -.| +-++++.-||||||-.. +.++.+|.+..... .+|.. ..
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~ 243 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGT 243 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCcc
Confidence 5778899988654 566 34999999999999875 66777776654433 11211 10
Q ss_pred ----------hcCCcEEEEChHHHHHHHHcC-----CCCcccccceEEEEccccc
Q 031654 106 ----------ARWVDNLMATLRRLVNLLERG-----RVSLQMIIRYLALKEAADQ 145 (155)
Q Consensus 106 ----------~~~~~IlI~TP~~l~~~l~~~-----~~~l~~l~~~lVlDEa~D~ 145 (155)
...++|.|+|-..+..-+... .+..... .++|+||| |+
T Consensus 244 ~~n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~F-DlIvIDEa-HR 296 (875)
T COG4096 244 KMNKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFF-DLIVIDEA-HR 296 (875)
T ss_pred ceeeeecccCCcceeEEEeehHHHHhhhhccccccccCCCCce-eEEEechh-hh
Confidence 124799999999988877654 4667778 89999999 87
No 133
>PRK08181 transposase; Validated
Probab=97.63 E-value=0.00031 Score=55.47 Aligned_cols=78 Identities=19% Similarity=0.201 Sum_probs=47.8
Q ss_pred CHHHHHHHH----HHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHcC--
Q 031654 53 TPVQRHATS----ILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLERG-- 126 (155)
Q Consensus 53 t~iQ~~~i~----~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~~-- 126 (155)
.+.|..++. .+-.+++++++||+|+|||.-.. .+...+ ...+..++..|...|.+.+...
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~-Aia~~a-------------~~~g~~v~f~~~~~L~~~l~~a~~ 154 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAA-AIGLAL-------------IENGWRVLFTRTTDLVQKLQVARR 154 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHH-HHHHHH-------------HHcCCceeeeeHHHHHHHHHHHHh
Confidence 344554442 23477899999999999996432 222222 2245667766666666655321
Q ss_pred --C-----CCcccccceEEEEcccccc
Q 031654 127 --R-----VSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 127 --~-----~~l~~l~~~lVlDEa~D~l 146 (155)
. -.+.++ .+|||||. +.+
T Consensus 155 ~~~~~~~l~~l~~~-dLLIIDDl-g~~ 179 (269)
T PRK08181 155 ELQLESAIAKLDKF-DLLILDDL-AYV 179 (269)
T ss_pred CCcHHHHHHHHhcC-CEEEEecc-ccc
Confidence 1 125677 89999999 764
No 134
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.63 E-value=0.00032 Score=62.64 Aligned_cols=95 Identities=18% Similarity=0.083 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHhcC-CcEEEEccCCCCcchhhhhHHHHHHHHhhhch------HHHHHHHhcCCcEEEEChHHHHHHH
Q 031654 51 KPTPVQRHATSILVAG-RDLMACAQTGSRKTTPFCFPIINGIMREYYSA------RKELRELARWVDNLMATLRRLVNLL 123 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g-~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------~~~~~~l~~~~~IlI~TP~~l~~~l 123 (155)
.+++-|..|+..++.+ +-+++.++.|+|||... -.++..+....... ......+.....+--.|-.++..-+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~ 430 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAW 430 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhh
Confidence 5799999999999875 56789999999998652 12222222211111 2233333332223233333332222
Q ss_pred HcCCCCcccccceEEEEccccccccc
Q 031654 124 ERGRVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 124 ~~~~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
..+.-.+... .+|||||| -|++.
T Consensus 431 ~~~~~~~~~~-~llIvDEa--sMv~~ 453 (744)
T TIGR02768 431 ANGRDLLSDK-DVLVIDEA--GMVGS 453 (744)
T ss_pred ccCcccCCCC-cEEEEECc--ccCCH
Confidence 2233345677 89999999 66654
No 135
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.56 E-value=0.00026 Score=55.38 Aligned_cols=42 Identities=29% Similarity=0.398 Sum_probs=38.2
Q ss_pred HHHHHHHhc-CCcEEEEChHHHHHHHHcCCCCcccccceEEEEc
Q 031654 99 RKELRELAR-WVDNLMATLRRLVNLLERGRVSLQMIIRYLALKE 141 (155)
Q Consensus 99 ~~~~~~l~~-~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDE 141 (155)
.+|...+.. ..+|.||||+||..++..+.+.++++ +++|||-
T Consensus 167 ~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l-~~ivlD~ 209 (252)
T PF14617_consen 167 EEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL-KRIVLDW 209 (252)
T ss_pred HHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC-eEEEEcC
Confidence 677777774 79999999999999999999999999 9999995
No 136
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.00031 Score=63.17 Aligned_cols=85 Identities=15% Similarity=0.082 Sum_probs=54.5
Q ss_pred HHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------------HHHHHHHh-----------------
Q 031654 58 HATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA--------------RKELRELA----------------- 106 (155)
Q Consensus 58 ~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--------------~~~~~~l~----------------- 106 (155)
+.+..+.+..-++++|+||||||...-.-+++.-....... ......+.
T Consensus 57 ~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~ 136 (845)
T COG1643 57 EILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKV 136 (845)
T ss_pred HHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccC
Confidence 33445555667899999999999873333333222111011 11222222
Q ss_pred -cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccc
Q 031654 107 -RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQ 145 (155)
Q Consensus 107 -~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ 145 (155)
..-.|-+.|.|-|+..+..+. .++.+ .++|+||| |.
T Consensus 137 s~~Trik~mTdGiLlrei~~D~-~Ls~y-s~vIiDEa-HE 173 (845)
T COG1643 137 SPRTRIKVMTDGILLREIQNDP-LLSGY-SVVIIDEA-HE 173 (845)
T ss_pred CCCceeEEeccHHHHHHHhhCc-ccccC-CEEEEcch-hh
Confidence 135788999999999988665 48999 99999999 63
No 137
>PRK06526 transposase; Provisional
Probab=97.53 E-value=0.0002 Score=56.12 Aligned_cols=69 Identities=19% Similarity=0.094 Sum_probs=41.5
Q ss_pred HHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHcC----C-----CCccc
Q 031654 62 ILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLERG----R-----VSLQM 132 (155)
Q Consensus 62 ~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~~----~-----~~l~~ 132 (155)
.+-.+++++++||+|+|||....- +...+. ..+..++..|...+.+.+... . ..+..
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~a-l~~~a~-------------~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~ 159 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIG-LGIRAC-------------QAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGR 159 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHH-HHHHHH-------------HCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhcc
Confidence 334668999999999999975432 212121 234455555555554444211 1 12456
Q ss_pred ccceEEEEcccccc
Q 031654 133 IIRYLALKEAADQT 146 (155)
Q Consensus 133 l~~~lVlDEa~D~l 146 (155)
. .+|||||+ +.+
T Consensus 160 ~-dlLIIDD~-g~~ 171 (254)
T PRK06526 160 Y-PLLIVDEV-GYI 171 (254)
T ss_pred C-CEEEEccc-ccC
Confidence 7 89999999 765
No 138
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.48 E-value=0.00069 Score=60.31 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=31.1
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchh
Q 031654 47 YKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 47 ~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
.++ .+++-|+.|+..+..++-+++.++.|||||..
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~ 354 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTI 354 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH
Confidence 343 68999999999999999999999999999974
No 139
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.48 E-value=0.00053 Score=52.86 Aligned_cols=110 Identities=20% Similarity=0.221 Sum_probs=72.3
Q ss_pred HHHHHhHHhCCCCCCCHHHHHHHHHHhc---CCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------------
Q 031654 38 QHLRNKPRTYKYVKPTPVQRHATSILVA---GRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------------- 98 (155)
Q Consensus 38 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~---g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------------- 98 (155)
.+++=.+.. ++ -..+.|......+.+ |.|.+.+.-.|.|||.+ ++|++..+..++..-
T Consensus 12 ~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~ 88 (229)
T PF12340_consen 12 DWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSRLVRVIVPKALLEQMRQM 88 (229)
T ss_pred HHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCcEEEEEcCHHHHHHHHHH
Confidence 444443433 33 458999998888875 58999999999999987 478887777655432
Q ss_pred --------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHc-------CCC-----------
Q 031654 99 --------------------------------RKELRELARWVDNLMATLRRLVNLLER-------GRV----------- 128 (155)
Q Consensus 99 --------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~-------~~~----------- 128 (155)
....+.....-.|+++||+.++.+.-. +..
T Consensus 89 L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~ 168 (229)
T PF12340_consen 89 LRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQK 168 (229)
T ss_pred HHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 112223333457999999998665321 111
Q ss_pred CcccccceEEEEcccccccccccc
Q 031654 129 SLQMIIRYLALKEAADQTLDMALN 152 (155)
Q Consensus 129 ~l~~l~~~lVlDEa~D~ll~~gf~ 152 (155)
-+.+. ..=|+||+ |..|..-|+
T Consensus 169 ~l~~~-~rdilDEs-De~L~~k~q 190 (229)
T PF12340_consen 169 WLDEH-SRDILDES-DEILSVKYQ 190 (229)
T ss_pred HHHhc-CCeEeECc-hhccCcceE
Confidence 02233 45689999 999986553
No 140
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.42 E-value=0.00013 Score=66.17 Aligned_cols=93 Identities=20% Similarity=0.194 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------------------------------
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------------------------------- 98 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------------------------------- 98 (155)
.|+++|-..=-.+..|+ ++.-.||-|||++..+|++-.........
T Consensus 138 ~~ydVQLiGgivLh~G~--IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i~~ 215 (1025)
T PRK12900 138 VPYDVQLIGGIVLHSGK--ISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVILN 215 (1025)
T ss_pred cccchHHhhhHHhhcCC--ccccCCCCCcchHhHHHHHHHHHcCCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeeeCC
Confidence 68888887655555554 67889999999999999877666554332
Q ss_pred --HHHHHHHhcCCcEEEEChHHH-HHHHHcCC------CCcccccceEEEEccccccc
Q 031654 99 --RKELRELARWVDNLMATLRRL-VNLLERGR------VSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 99 --~~~~~~l~~~~~IlI~TP~~l-~~~l~~~~------~~l~~l~~~lVlDEa~D~ll 147 (155)
....+.-.-.|||..||..-+ .|+|+.+. .-.... .|.||||+ |.+|
T Consensus 216 ~~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~-~faIVDEv-DSvL 271 (1025)
T PRK12900 216 TMRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDF-YFAIVDEV-DSVL 271 (1025)
T ss_pred CCCHHHHHHhCCCcceecCCCccccccchhccccchhhhhccCC-ceEEEech-hhhh
Confidence 233344445799999999665 33443321 234667 89999999 9877
No 141
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=97.36 E-value=0.001 Score=61.19 Aligned_cols=99 Identities=24% Similarity=0.310 Sum_probs=68.8
Q ss_pred HHHHhH-HhCCCCCCCHHHHHHHHHHhc----C--CcEEEEccCCCCcchhhhhHHHHHHHHhhhch-------------
Q 031654 39 HLRNKP-RTYKYVKPTPVQRHATSILVA----G--RDLMACAQTGSRKTTPFCFPIINGIMREYYSA------------- 98 (155)
Q Consensus 39 ~l~~~l-~~~g~~~pt~iQ~~~i~~~l~----g--~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------------- 98 (155)
+..+.+ ..++|+. |+=|..||..+.+ + -|=++|+--|-|||-+.+=++...+..++...
T Consensus 582 ~~q~~F~~~FPyeE-T~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy 660 (1139)
T COG1197 582 EWQEEFEASFPYEE-TPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHY 660 (1139)
T ss_pred HHHHHHHhcCCCcC-CHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHH
Confidence 333333 4456654 9999999999863 3 48899999999999887766555444432221
Q ss_pred --------------------------HHHHHHHhc-CCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccc
Q 031654 99 --------------------------RKELRELAR-WVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQ 145 (155)
Q Consensus 99 --------------------------~~~~~~l~~-~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ 145 (155)
......+.+ ..||||||..- | .+.+.+.++ .++||||= ++
T Consensus 661 ~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrL----L-~kdv~FkdL-GLlIIDEE-qR 727 (1139)
T COG1197 661 ETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRL----L-SKDVKFKDL-GLLIIDEE-QR 727 (1139)
T ss_pred HHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHh----h-CCCcEEecC-CeEEEech-hh
Confidence 223334433 68999999643 2 566889999 99999997 55
No 142
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.36 E-value=0.00077 Score=58.94 Aligned_cols=47 Identities=13% Similarity=-0.019 Sum_probs=38.0
Q ss_pred HHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHH
Q 031654 44 PRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIING 90 (155)
Q Consensus 44 l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~ 90 (155)
+...|..+++.-|..|..++++..=.++++|+|+|||..-.--+++.
T Consensus 403 ~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl 449 (935)
T KOG1802|consen 403 FSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHL 449 (935)
T ss_pred hcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHH
Confidence 34456778899999999999999999999999999998764444433
No 143
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=97.32 E-value=0.00047 Score=62.26 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------------HHHHHH------------
Q 031654 53 TPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------------RKELRE------------ 104 (155)
Q Consensus 53 t~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------------~~~~~~------------ 104 (155)
+..+...+..+.+..-+++++.||+|||.-----+++........+ ..-..+
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYq 254 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQ 254 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEE
Confidence 5667777888888899999999999999864333555443333221 111111
Q ss_pred ------HhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccc
Q 031654 105 ------LARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQ 145 (155)
Q Consensus 105 ------l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ 145 (155)
......++.||-|-|++.+.. .-.+..+ .++|+||+ |.
T Consensus 255 vrl~~~~s~~t~L~fcTtGvLLr~L~~-~~~l~~v-thiivDEV-HE 298 (924)
T KOG0920|consen 255 VRLESKRSRETRLLFCTTGVLLRRLQS-DPTLSGV-THIIVDEV-HE 298 (924)
T ss_pred EeeecccCCceeEEEecHHHHHHHhcc-CcccccC-ceeeeeeE-EE
Confidence 112357999999999999877 5578889 99999999 53
No 144
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.31 E-value=0.00059 Score=54.68 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=35.9
Q ss_pred CCCCCcccccCC-HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch
Q 031654 26 LSSPAARFAYVP-QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA 98 (155)
Q Consensus 26 ~p~~~~~f~~l~-~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~ 98 (155)
+|..+.+|++|+ |.++..+.+.. .-=|+|.+|||||||... ..+++.+.++....
T Consensus 101 Ip~~i~~~e~LglP~i~~~~~~~~-----------------~GLILVTGpTGSGKSTTl-AamId~iN~~~~~H 156 (353)
T COG2805 101 IPSKIPTLEELGLPPIVRELAESP-----------------RGLILVTGPTGSGKSTTL-AAMIDYINKHKAKH 156 (353)
T ss_pred cCccCCCHHHcCCCHHHHHHHhCC-----------------CceEEEeCCCCCcHHHHH-HHHHHHHhccCCcc
Confidence 567777888777 55554443321 124899999999998763 56777776655443
No 145
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.29 E-value=0.00031 Score=57.25 Aligned_cols=79 Identities=13% Similarity=0.074 Sum_probs=42.4
Q ss_pred cEEEEccCCCCcchhhhhHHHHHH--HHhhhch----------HHHHHHHhcC-----CcEEEEChHHHHHHHHcCCCCc
Q 031654 68 DLMACAQTGSRKTTPFCFPIINGI--MREYYSA----------RKELRELARW-----VDNLMATLRRLVNLLERGRVSL 130 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yllp~l~~l--~~~~~~~----------~~~~~~l~~~-----~~IlI~TP~~l~~~l~~~~~~l 130 (155)
-++|.+.+|||||+..+ -++..+ ....... ......+... ....+..|..+...+.......
T Consensus 3 v~~I~G~aGTGKTvla~-~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 81 (352)
T PF09848_consen 3 VILITGGAGTGKTVLAL-NLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEK 81 (352)
T ss_pred EEEEEecCCcCHHHHHH-HHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccC
Confidence 36889999999999753 233333 1111111 1111222221 1334444544443333222345
Q ss_pred ccccceEEEEccccccccc
Q 031654 131 QMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 131 ~~l~~~lVlDEa~D~ll~~ 149 (155)
... .++|+||| ++|.+.
T Consensus 82 ~~~-DviivDEA-qrl~~~ 98 (352)
T PF09848_consen 82 NKY-DVIIVDEA-QRLRTK 98 (352)
T ss_pred CcC-CEEEEehh-Hhhhhc
Confidence 677 89999999 999883
No 146
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.23 E-value=0.00032 Score=63.91 Aligned_cols=93 Identities=22% Similarity=0.188 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------------------------------
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------------------------------- 98 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------------------------------- 98 (155)
+|+.+|-..=-.+..|+ ++.-.||-|||++..+|++-..+......
T Consensus 169 ~~yDVQliGgivLh~G~--IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg~i~~ 246 (1112)
T PRK12901 169 VHYDVQLIGGVVLHQGK--IAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIDK 246 (1112)
T ss_pred cccchHHhhhhhhcCCc--eeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCCceeecCC
Confidence 57888877554454554 77899999999999999877766654433
Q ss_pred ---HHHHHHHhcCCcEEEEChHHH-HHHHHcC------CCCcccccceEEEEccccccc
Q 031654 99 ---RKELRELARWVDNLMATLRRL-VNLLERG------RVSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 99 ---~~~~~~l~~~~~IlI~TP~~l-~~~l~~~------~~~l~~l~~~lVlDEa~D~ll 147 (155)
....+.-.-.|||..+|...+ .|+|+.+ ......+ .|.|+||+ |.+|
T Consensus 247 ~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~-~fAIVDEv-DSIL 303 (1112)
T PRK12901 247 HQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKH-NYAIVDEV-DSVL 303 (1112)
T ss_pred CCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCC-ceeEeech-hhhh
Confidence 222333334799999998665 3344332 1234567 89999999 9887
No 147
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.20 E-value=0.00061 Score=53.05 Aligned_cols=73 Identities=22% Similarity=0.335 Sum_probs=40.7
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHh----cCCcEEEEChHHHHHHHHcCCCCc--ccccceEEEE
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELA----RWVDNLMATLRRLVNLLERGRVSL--QMIIRYLALK 140 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~----~~~~IlI~TP~~l~~~l~~~~~~l--~~l~~~lVlD 140 (155)
-++++.+|+|+|||.+.+.-+-..+-... ++-.-++. +|.|++= .+ ..++-.+.+.+ .+- +.+|+|
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG~~~---ke~vLELNASdeRGIDvVR---n~-IK~FAQ~kv~lp~grh-KIiILD 120 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLGDSY---KEAVLELNASDERGIDVVR---NK-IKMFAQKKVTLPPGRH-KIIILD 120 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhChhh---hhHhhhccCccccccHHHH---HH-HHHHHHhhccCCCCce-eEEEee
Confidence 58999999999999986543322221111 11122221 2333321 11 22333344444 667 889999
Q ss_pred cccccccc
Q 031654 141 EAADQTLD 148 (155)
Q Consensus 141 Ea~D~ll~ 148 (155)
|| |.|-+
T Consensus 121 EA-DSMT~ 127 (333)
T KOG0991|consen 121 EA-DSMTA 127 (333)
T ss_pred cc-chhhh
Confidence 99 99865
No 148
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.12 E-value=0.0014 Score=55.59 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=34.9
Q ss_pred HHhCCCCCCCHHHHHHHHHHhcCC--cEEEEccCCCCcchhhhhHHHHHHHHhhh
Q 031654 44 PRTYKYVKPTPVQRHATSILVAGR--DLMACAQTGSRKTTPFCFPIINGIMREYY 96 (155)
Q Consensus 44 l~~~g~~~pt~iQ~~~i~~~l~g~--dvl~~a~TGsGKT~~yllp~l~~l~~~~~ 96 (155)
+.++|+ ++-|...+..+++.. =+++.+|||||||.. +..+++.+.....
T Consensus 237 l~~Lg~---~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~~~ 287 (500)
T COG2804 237 LEKLGM---SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTPER 287 (500)
T ss_pred HHHhCC---CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCCCc
Confidence 445554 778888888887664 388899999999986 3556666655443
No 149
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.0014 Score=51.39 Aligned_cols=80 Identities=21% Similarity=0.306 Sum_probs=48.2
Q ss_pred CCCCCCHHHHHHHHHHh-------cCCcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHH
Q 031654 48 KYVKPTPVQRHATSILV-------AGRDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLV 120 (155)
Q Consensus 48 g~~~pt~iQ~~~i~~~l-------~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~ 120 (155)
.|.....++..++..+. ++.++++.|++|+|||.-. .++.+.+. ..+..+++.|-..+.
T Consensus 80 d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa-~Ai~~~l~-------------~~g~sv~f~~~~el~ 145 (254)
T COG1484 80 DFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLA-IAIGNELL-------------KAGISVLFITAPDLL 145 (254)
T ss_pred cccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHH-HHHHHHHH-------------HcCCeEEEEEHHHHH
Confidence 44445555555444332 6679999999999999743 22322222 235556555554444
Q ss_pred HHHHc----CC-----CC-cccccceEEEEcc
Q 031654 121 NLLER----GR-----VS-LQMIIRYLALKEA 142 (155)
Q Consensus 121 ~~l~~----~~-----~~-l~~l~~~lVlDEa 142 (155)
.-+.. +. .. +.++ ++|||||.
T Consensus 146 ~~Lk~~~~~~~~~~~l~~~l~~~-dlLIiDDl 176 (254)
T COG1484 146 SKLKAAFDEGRLEEKLLRELKKV-DLLIIDDI 176 (254)
T ss_pred HHHHHHHhcCchHHHHHHHhhcC-CEEEEecc
Confidence 44432 11 23 7788 99999998
No 150
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.08 E-value=0.0021 Score=56.06 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCCcchhh
Q 031654 54 PVQRHATSILVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 54 ~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~y 83 (155)
..|+.|+-.++.++-.++.+++|||||...
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v 177 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTV 177 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHH
Confidence 689999999999999999999999999863
No 151
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.08 E-value=0.003 Score=43.25 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCcchh
Q 031654 66 GRDLMACAQTGSRKTTP 82 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~ 82 (155)
++.+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999963
No 152
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.03 E-value=0.0053 Score=56.90 Aligned_cols=95 Identities=19% Similarity=0.113 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHhcC-CcEEEEccCCCCcchhhhhHHHHHHHHhhhch------HHHHHHHhcCCcEEEEChHHHHHHH
Q 031654 51 KPTPVQRHATSILVAG-RDLMACAQTGSRKTTPFCFPIINGIMREYYSA------RKELRELARWVDNLMATLRRLVNLL 123 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g-~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------~~~~~~l~~~~~IlI~TP~~l~~~l 123 (155)
.+++-|..++..+..+ +=++++++.|||||...- ++...+....... ......|.....|--.|-.+++.-.
T Consensus 381 ~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TIas~ll~~ 459 (1102)
T PRK13826 381 RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLSSWELRW 459 (1102)
T ss_pred CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeHHHHHhhh
Confidence 6899999999988654 568889999999997532 2333332222111 4444444443344444544432112
Q ss_pred HcCCCCcccccceEEEEccccccccc
Q 031654 124 ERGRVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 124 ~~~~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
..+...+..- .+|||||| -|++.
T Consensus 460 ~~~~~~l~~~-~vlVIDEA--sMv~~ 482 (1102)
T PRK13826 460 NQGRDQLDNK-TVFVLDEA--GMVAS 482 (1102)
T ss_pred ccCccCCCCC-cEEEEECc--ccCCH
Confidence 2233445666 78999999 67653
No 153
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=96.98 E-value=0.0026 Score=58.55 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHh----cCCcEEEEccCCCCcchhhhhHHHHHHHHhhhc--h--------------------------
Q 031654 51 KPTPVQRHATSILV----AGRDLMACAQTGSRKTTPFCFPIINGIMREYYS--A-------------------------- 98 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l----~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~--~-------------------------- 98 (155)
.+.+.|..++..++ +|.+.+++-..|.|||+.. +.++..+...... .
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~~~~gp~LIVvP~SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHHHHCCCCce
Confidence 56889999987664 6788999999999999864 3333333321110 0
Q ss_pred ------HHHHH----H--HhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccc
Q 031654 99 ------RKELR----E--LARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 99 ------~~~~~----~--l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
..... . ....++|+|+|.+.+..... .+.--.. .++|+||| |++=+
T Consensus 248 ~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W-~~VIvDEA-HrIKN 305 (1033)
T PLN03142 248 VKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSW-RYIIIDEA-HRIKN 305 (1033)
T ss_pred EEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCC-CEEEEcCc-cccCC
Confidence 11111 1 12357899999887654322 1222245 68999999 88754
No 154
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=96.97 E-value=8.5e-05 Score=67.24 Aligned_cols=96 Identities=20% Similarity=0.179 Sum_probs=67.7
Q ss_pred CCCCCCHHHHHHHHHHhcC-CcEEEEccCCCCcchhhhhHHHHHHHHhhhch-----------------H----------
Q 031654 48 KYVKPTPVQRHATSILVAG-RDLMACAQTGSRKTTPFCFPIINGIMREYYSA-----------------R---------- 99 (155)
Q Consensus 48 g~~~pt~iQ~~~i~~~l~g-~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-----------------~---------- 99 (155)
-+....|+|.+.+-.+..- .+.++-+|||+|||++|-+.+...+....... .
T Consensus 924 ~~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k 1003 (1230)
T KOG0952|consen 924 LYKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIK 1003 (1230)
T ss_pred hhcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCce
Confidence 3446677888776555443 68899999999999999998877666544433 0
Q ss_pred ---------HHHHHHhcCCcEEEEChHHHHHHHHc--CCCCcccccceEEEEcccccc
Q 031654 100 ---------KELRELARWVDNLMATLRRLVNLLER--GRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 100 ---------~~~~~l~~~~~IlI~TP~~l~~~l~~--~~~~l~~l~~~lVlDEa~D~l 146 (155)
.....+ ..++++|+||++.-.+.++ +.-.+.++ ..+|+||. +.+
T Consensus 1004 ~ie~tgd~~pd~~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v-~~iv~de~-hll 1058 (1230)
T KOG0952|consen 1004 VIELTGDVTPDVKAV-READIVITTPEKWDGISRSWQTRKYVQSV-SLIVLDEI-HLL 1058 (1230)
T ss_pred eEeccCccCCChhhe-ecCceEEcccccccCccccccchhhhccc-cceeeccc-ccc
Confidence 001111 2479999999997766663 34568889 99999999 443
No 155
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.94 E-value=0.0013 Score=57.49 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHhcCCcEEEEccCCCCcchhh
Q 031654 53 TPVQRHATSILVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 53 t~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~y 83 (155)
...|+.|+-..+..+-.++.+++|||||..-
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v 184 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV 184 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence 5799999999999999999999999999763
No 156
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.90 E-value=0.0034 Score=51.01 Aligned_cols=67 Identities=19% Similarity=0.153 Sum_probs=45.0
Q ss_pred cCCcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHcC----C-------CCcccc
Q 031654 65 AGRDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLERG----R-------VSLQMI 133 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~~----~-------~~l~~l 133 (155)
.+.++++.|+||+|||.-. ..+...+ +..+..|+..|...+.+.+... . -.+.++
T Consensus 182 ~~~~Lll~G~~GtGKThLa-~aIa~~l-------------~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 247 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS-NCIAKEL-------------LDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINC 247 (329)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHH-------------HHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccC
Confidence 4589999999999999732 2333322 2346778888877777766331 1 124678
Q ss_pred cceEEEEccccccc
Q 031654 134 IRYLALKEAADQTL 147 (155)
Q Consensus 134 ~~~lVlDEa~D~ll 147 (155)
.+||||+. ....
T Consensus 248 -DLLIIDDl-G~e~ 259 (329)
T PRK06835 248 -DLLIIDDL-GTEK 259 (329)
T ss_pred -CEEEEecc-CCCC
Confidence 99999999 6543
No 157
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.89 E-value=0.00066 Score=46.79 Aligned_cols=19 Identities=37% Similarity=0.370 Sum_probs=12.6
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
+++-+++.|++|+|||...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ----EEEEE-TTSSHHHHH
T ss_pred CCcccEEEcCCCCCHHHHH
Confidence 3567899999999999863
No 158
>PRK08727 hypothetical protein; Validated
Probab=96.88 E-value=0.0019 Score=49.70 Aligned_cols=65 Identities=14% Similarity=0.038 Sum_probs=38.4
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccc
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~l 146 (155)
..+++.|++|+|||.... .+...+. ..+..++..+...+...+..-.-.+.++ ..|||||+ |.+
T Consensus 42 ~~l~l~G~~G~GKThL~~-a~~~~~~-------------~~~~~~~y~~~~~~~~~~~~~~~~l~~~-dlLiIDDi-~~l 105 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL-ALCAAAE-------------QAGRSSAYLPLQAAAGRLRDALEALEGR-SLVALDGL-ESI 105 (233)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHH-------------HcCCcEEEEeHHHhhhhHHHHHHHHhcC-CEEEEeCc-ccc
Confidence 359999999999996422 2222221 1244555555544433322211245677 89999999 876
Q ss_pred c
Q 031654 147 L 147 (155)
Q Consensus 147 l 147 (155)
.
T Consensus 106 ~ 106 (233)
T PRK08727 106 A 106 (233)
T ss_pred c
Confidence 5
No 159
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0035 Score=51.67 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
.|+++.|+||||||..-
T Consensus 43 ~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 43 SNIIIYGPTGTGKTATV 59 (366)
T ss_pred ccEEEECCCCCCHhHHH
Confidence 47999999999999873
No 160
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.85 E-value=0.0022 Score=58.05 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHHHHhcCCc-EEEEccCCCCcchhh
Q 031654 49 YVKPTPVQRHATSILVAGRD-LMACAQTGSRKTTPF 83 (155)
Q Consensus 49 ~~~pt~iQ~~~i~~~l~g~d-vl~~a~TGsGKT~~y 83 (155)
+..++.-|++|+-.++..+| .++.+=+|||||..-
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI 702 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTI 702 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhH
Confidence 34678899999999999987 678899999999864
No 161
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.83 E-value=0.0062 Score=49.29 Aligned_cols=47 Identities=32% Similarity=0.323 Sum_probs=31.8
Q ss_pred HhHHhCCCCCCCHHHHHHHHH-HhcCCcEEEEccCCCCcchhhhhHHHHHH
Q 031654 42 NKPRTYKYVKPTPVQRHATSI-LVAGRDLMACAQTGSRKTTPFCFPIINGI 91 (155)
Q Consensus 42 ~~l~~~g~~~pt~iQ~~~i~~-~l~g~dvl~~a~TGsGKT~~yllp~l~~l 91 (155)
+.+.+.|+ +++.|...+.. +..+++++++++||||||. ++-.++..+
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~ 172 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEM 172 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhh
Confidence 33444554 46777777764 4566899999999999994 444555443
No 162
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=96.80 E-value=0.0021 Score=58.86 Aligned_cols=95 Identities=14% Similarity=0.055 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHhcC--CcEEEEccCCCCcchhhhhHHHHHHHHhhhch-------------HHHH-HHH---------
Q 031654 51 KPTPVQRHATSILVAG--RDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------------RKEL-REL--------- 105 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g--~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------------~~~~-~~l--------- 105 (155)
.|.|+|..+.-.++.. ..+++.-..|.|||.-..+-+-..+..+.... ..+. +..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~QW~~El~~kF~l~~~i~~~ 231 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPETLQHQWLVEMLRRFNLRFSLFDE 231 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHHHHHHHHHHHhCCCeEEEcC
Confidence 4899999988766543 47899999999999987655544444332211 1111 110
Q ss_pred -------------hcCCcEEEEChHHHHHHHH-cCCCCcccccceEEEEccccccc
Q 031654 106 -------------ARWVDNLMATLRRLVNLLE-RGRVSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 106 -------------~~~~~IlI~TP~~l~~~l~-~~~~~l~~l~~~lVlDEa~D~ll 147 (155)
....+++|++-+.+...-. ...+.-... +++|+||| |++-
T Consensus 232 ~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~w-dlvIvDEA-H~lk 285 (956)
T PRK04914 232 ERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEW-DLLVVDEA-HHLV 285 (956)
T ss_pred cchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCC-CEEEEech-hhhc
Confidence 0135688888766543110 011222356 88999999 9985
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=96.80 E-value=0.0022 Score=50.06 Aligned_cols=23 Identities=22% Similarity=0.099 Sum_probs=14.5
Q ss_pred cCCcEEEEccCCCCcchhhhhHH
Q 031654 65 AGRDLMACAQTGSRKTTPFCFPI 87 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yllp~ 87 (155)
..+..+++-..|+|||+..+.-+
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~ 46 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALI 46 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchhhhhhhh
Confidence 34689999999999998865443
No 164
>PHA00729 NTP-binding motif containing protein
Probab=96.79 E-value=0.0066 Score=46.81 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=40.8
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcc
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEA 142 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa 142 (155)
.++++.|++|+|||... ..+...+................+-..++.+...+.+.+....-...++ .++|+||+
T Consensus 18 ~nIlItG~pGvGKT~LA-~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~-dlLIIDd~ 91 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYA-LKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRI-PLIIFDDA 91 (226)
T ss_pred EEEEEECCCCCCHHHHH-HHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCC-CEEEEeCC
Confidence 38999999999999643 2233332211000000111223344566677777777765422223456 78999995
No 165
>PRK06893 DNA replication initiation factor; Validated
Probab=96.78 E-value=0.0021 Score=49.34 Aligned_cols=65 Identities=9% Similarity=0.032 Sum_probs=35.3
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccc
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~l 146 (155)
..++++||+|+|||.-. ..+.+.+.. ++..++..+..........-.-.+.+. ++|||||+ |.+
T Consensus 40 ~~l~l~G~~G~GKThL~-~ai~~~~~~-------------~~~~~~y~~~~~~~~~~~~~~~~~~~~-dlLilDDi-~~~ 103 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLL-KAVSNHYLL-------------NQRTAIYIPLSKSQYFSPAVLENLEQQ-DLVCLDDL-QAV 103 (229)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHH-------------cCCCeEEeeHHHhhhhhHHHHhhcccC-CEEEEeCh-hhh
Confidence 34799999999999632 222222221 223444444332211111101135677 89999999 877
Q ss_pred c
Q 031654 147 L 147 (155)
Q Consensus 147 l 147 (155)
.
T Consensus 104 ~ 104 (229)
T PRK06893 104 I 104 (229)
T ss_pred c
Confidence 5
No 166
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.77 E-value=0.0053 Score=47.87 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=40.6
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHcC----C-------CCcccccc
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLERG----R-------VSLQMIIR 135 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~~----~-------~~l~~l~~ 135 (155)
..+++.+++|+|||.... .+...+.. .+..+++.|-..+...+... . -.+.++ .
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~-------------~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~-d 164 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL-------------RGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNV-D 164 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh-------------cCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccC-C
Confidence 479999999999997432 33333322 24556666665555443321 0 125678 9
Q ss_pred eEEEEccccccc
Q 031654 136 YLALKEAADQTL 147 (155)
Q Consensus 136 ~lVlDEa~D~ll 147 (155)
+|||||+ +..-
T Consensus 165 lLvIDDi-g~~~ 175 (244)
T PRK07952 165 LLVIDEI-GVQT 175 (244)
T ss_pred EEEEeCC-CCCC
Confidence 9999999 7754
No 167
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.77 E-value=0.0038 Score=47.17 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=36.0
Q ss_pred cCCcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccc
Q 031654 65 AGRDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAAD 144 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D 144 (155)
.+..+++.|++|+|||..... +..... ..+..++..+-..+......-.-.+... .+|||||+ |
T Consensus 37 ~~~~lll~G~~G~GKT~la~~-~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~lLvIDdi-~ 100 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA-ACAAAE-------------ERGKSAIYLPLAELAQADPEVLEGLEQA-DLVCLDDV-E 100 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHH-------------hcCCcEEEEeHHHHHHhHHHHHhhcccC-CEEEEeCh-h
Confidence 457899999999999975321 111111 1223444444333322111000123456 78999999 8
Q ss_pred ccc
Q 031654 145 QTL 147 (155)
Q Consensus 145 ~ll 147 (155)
.+-
T Consensus 101 ~l~ 103 (226)
T TIGR03420 101 AIA 103 (226)
T ss_pred hhc
Confidence 764
No 168
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.76 E-value=0.012 Score=48.57 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=39.7
Q ss_pred hCCCCCCCHHHHHHHHHHhcC--CcEEEEccCCCCcchhhhhHHHHHHHHhhh
Q 031654 46 TYKYVKPTPVQRHATSILVAG--RDLMACAQTGSRKTTPFCFPIINGIMREYY 96 (155)
Q Consensus 46 ~~g~~~pt~iQ~~~i~~~l~g--~dvl~~a~TGsGKT~~yllp~l~~l~~~~~ 96 (155)
..|+..-+.-|..|+..++.- .=|-..++.|||||+-.+.+.+.+....+.
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~ 275 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR 275 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh
Confidence 447877788899999998876 346677999999999988887777765443
No 169
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=96.74 E-value=0.0031 Score=54.96 Aligned_cols=34 Identities=18% Similarity=0.083 Sum_probs=26.8
Q ss_pred CcEEEEChHHHHHHHHcCCCCcccccceEEEEccccc
Q 031654 109 VDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQ 145 (155)
Q Consensus 109 ~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ 145 (155)
..|...|-|.|++.+-.+. .++.. .++||||| |.
T Consensus 141 TrikymTDG~LLRE~l~Dp-~LskY-svIIlDEA-HE 174 (674)
T KOG0922|consen 141 TRIKYMTDGMLLREILKDP-LLSKY-SVIILDEA-HE 174 (674)
T ss_pred eeEEEecchHHHHHHhcCC-ccccc-cEEEEech-hh
Confidence 5788999999887765443 57888 89999999 64
No 170
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.73 E-value=0.0044 Score=52.31 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHhcCCcEEEEccCCCCcchhh
Q 031654 53 TPVQRHATSILVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 53 t~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~y 83 (155)
-......+..+..++++++.+++|+|||...
T Consensus 181 e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 181 ETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 3344556677778999999999999999754
No 171
>PRK12377 putative replication protein; Provisional
Probab=96.70 E-value=0.008 Score=46.98 Aligned_cols=64 Identities=19% Similarity=0.236 Sum_probs=39.0
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHc----C------CCCcccccce
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLER----G------RVSLQMIIRY 136 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~----~------~~~l~~l~~~ 136 (155)
.++++.|++|+|||... ..+.+.+. ..+..+++.|-..+...+.. + .-.+.++ .+
T Consensus 102 ~~l~l~G~~GtGKThLa-~AIa~~l~-------------~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~-dL 166 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA-AAIGNRLL-------------AKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKV-DL 166 (248)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHH-------------HcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCC-CE
Confidence 68999999999999642 23333222 23444555544455554432 1 0135788 99
Q ss_pred EEEEcccccc
Q 031654 137 LALKEAADQT 146 (155)
Q Consensus 137 lVlDEa~D~l 146 (155)
|||||+ ...
T Consensus 167 LiIDDl-g~~ 175 (248)
T PRK12377 167 LVLDEI-GIQ 175 (248)
T ss_pred EEEcCC-CCC
Confidence 999999 654
No 172
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.67 E-value=0.0043 Score=52.02 Aligned_cols=89 Identities=12% Similarity=0.093 Sum_probs=55.8
Q ss_pred HHHHHh-HHhCCCCCC--CHHHHH-----HHHHHhcCCcEEEEccCCCCcchhhhh-HHHHHHHHhhhchHHHHHHHhcC
Q 031654 38 QHLRNK-PRTYKYVKP--TPVQRH-----ATSILVAGRDLMACAQTGSRKTTPFCF-PIINGIMREYYSARKELRELARW 108 (155)
Q Consensus 38 ~~l~~~-l~~~g~~~p--t~iQ~~-----~i~~~l~g~dvl~~a~TGsGKT~~yll-p~l~~l~~~~~~~~~~~~~l~~~ 108 (155)
++.+.. |.+.||+.. +.-|+. .+|.+-++.|++..+|+|+|||..|.- .... .+..|
T Consensus 173 dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~--------------a~~sG 238 (449)
T TIGR02688 173 EEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYV--------------ILISG 238 (449)
T ss_pred HHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHH--------------HHHcC
Confidence 445554 567888642 332221 226667889999999999999976641 1111 12233
Q ss_pred CcEEEEChHHHHHHHHcCCC-CcccccceEEEEccccc
Q 031654 109 VDNLMATLRRLVNLLERGRV-SLQMIIRYLALKEAADQ 145 (155)
Q Consensus 109 ~~IlI~TP~~l~~~l~~~~~-~l~~l~~~lVlDEa~D~ 145 (155)
-..|+..|...+..+.+ .+... ++||+||+ -.
T Consensus 239 ---~f~T~a~Lf~~L~~~~lg~v~~~-DlLI~DEv-gy 271 (449)
T TIGR02688 239 ---GTITVAKLFYNISTRQIGLVGRW-DVVAFDEV-AT 271 (449)
T ss_pred ---CcCcHHHHHHHHHHHHHhhhccC-CEEEEEcC-CC
Confidence 55677777776666433 36677 89999999 44
No 173
>PRK08116 hypothetical protein; Validated
Probab=96.57 E-value=0.017 Score=45.56 Aligned_cols=63 Identities=21% Similarity=0.251 Sum_probs=39.2
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHcC-----------CC-Cccccc
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLERG-----------RV-SLQMII 134 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~~-----------~~-~l~~l~ 134 (155)
..+++.|++|+|||.... .+.+.+.. .+..+++.+...+++.+... .+ .+.++
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~-------------~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~- 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIE-------------KGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNA- 179 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHH-------------cCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCC-
Confidence 349999999999987532 34443322 24456666655555554321 01 25678
Q ss_pred ceEEEEccccc
Q 031654 135 RYLALKEAADQ 145 (155)
Q Consensus 135 ~~lVlDEa~D~ 145 (155)
.+|||||+ ..
T Consensus 180 dlLviDDl-g~ 189 (268)
T PRK08116 180 DLLILDDL-GA 189 (268)
T ss_pred CEEEEecc-cC
Confidence 89999998 53
No 174
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.53 E-value=0.023 Score=48.52 Aligned_cols=52 Identities=23% Similarity=0.230 Sum_probs=35.5
Q ss_pred CcccccCC--HHHHHhHHhCCCCCCCHHHHHHH-HHHhcCCcEEEEccCCCCcchh
Q 031654 30 AARFAYVP--QHLRNKPRTYKYVKPTPVQRHAT-SILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 30 ~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i-~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
+.-|...| ++-.+.|++. -+-|-=-|++.+ ..+.+.+-+++++.||||||.-
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R-~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQ 78 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKR-RELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQ 78 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHH-hcCchHHhHHHHHHHHhcCceEEEEecCCCCcccc
Confidence 56688888 6666666654 233433455544 4555667899999999999975
No 175
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.51 E-value=0.002 Score=51.77 Aligned_cols=22 Identities=14% Similarity=-0.010 Sum_probs=18.1
Q ss_pred CCcEEEEccCCCCcchhhhhHH
Q 031654 66 GRDLMACAQTGSRKTTPFCFPI 87 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yllp~ 87 (155)
+-+.+..+|+|||||.+.++-.
T Consensus 57 lp~~LFyGPpGTGKTStalafa 78 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFA 78 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHH
Confidence 3578999999999999876544
No 176
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.49 E-value=0.011 Score=44.92 Aligned_cols=62 Identities=8% Similarity=0.035 Sum_probs=37.9
Q ss_pred cCCcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccc
Q 031654 65 AGRDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAAD 144 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D 144 (155)
.++.++++|++|+|||.... .+... ....+..+++.+...+...+. ..... +.|||||+ |
T Consensus 41 ~~~~~~l~G~~G~GKT~La~-ai~~~-------------~~~~~~~~~~i~~~~~~~~~~----~~~~~-~~liiDdi-~ 100 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQ-ALVAD-------------ASYGGRNARYLDAASPLLAFD----FDPEA-ELYAVDDV-E 100 (227)
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHH-------------HHhCCCcEEEEehHHhHHHHh----hcccC-CEEEEeCh-h
Confidence 34689999999999996421 11111 112345566666655443321 23456 78999999 8
Q ss_pred cc
Q 031654 145 QT 146 (155)
Q Consensus 145 ~l 146 (155)
.+
T Consensus 101 ~l 102 (227)
T PRK08903 101 RL 102 (227)
T ss_pred hc
Confidence 76
No 177
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.49 E-value=0.006 Score=47.04 Aligned_cols=66 Identities=5% Similarity=0.044 Sum_probs=35.9
Q ss_pred CCcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccc
Q 031654 66 GRDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQ 145 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ 145 (155)
+..++++||+|+|||.-.. .+.+.+.. .+..++..+..........-.-.+.++ .+|+|||+ |.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~-a~~~~~~~-------------~~~~v~y~~~~~~~~~~~~~~~~~~~~-dlliiDdi-~~ 108 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLH-AACAELSQ-------------RGRAVGYVPLDKRAWFVPEVLEGMEQL-SLVCIDNI-EC 108 (235)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHh-------------CCCeEEEEEHHHHhhhhHHHHHHhhhC-CEEEEeCh-hh
Confidence 4689999999999996432 22222221 234454444433221111000123456 78999999 87
Q ss_pred cc
Q 031654 146 TL 147 (155)
Q Consensus 146 ll 147 (155)
+-
T Consensus 109 ~~ 110 (235)
T PRK08084 109 IA 110 (235)
T ss_pred hc
Confidence 64
No 178
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.46 E-value=0.012 Score=48.27 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHH------hcCCcEEEEccCCCCcchhh
Q 031654 52 PTPVQRHATSIL------VAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 52 pt~iQ~~~i~~~------l~g~dvl~~a~TGsGKT~~y 83 (155)
+++-|+.++..+ ..|..+++.++-|+|||..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH
Confidence 577899998888 77899999999999998754
No 179
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.44 E-value=0.0073 Score=53.18 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHhcC-CcEEEEccCCCCcchhhhhHHHHHHH
Q 031654 51 KPTPVQRHATSILVAG-RDLMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g-~dvl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
.+++.|..|+..++.. ..+++.||+|||||..-. .++..+.
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~-~ii~~~~ 198 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLV-ELIRQLV 198 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHH-HHHHHHH
Confidence 4589999999999877 678899999999996543 3333333
No 180
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0056 Score=49.63 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
...|++..+|||||||+-
T Consensus 96 ~KSNILLiGPTGsGKTlL 113 (408)
T COG1219 96 SKSNILLIGPTGSGKTLL 113 (408)
T ss_pred eeccEEEECCCCCcHHHH
Confidence 335899999999999984
No 181
>PRK05642 DNA replication initiation factor; Validated
Probab=96.38 E-value=0.0065 Score=46.83 Aligned_cols=65 Identities=11% Similarity=0.015 Sum_probs=39.9
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccc
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~l 146 (155)
..++++|++|+|||.- +-.+.+.+. ..+..++..+.+.+......-.-.+.++ .+||+|++ +.+
T Consensus 46 ~~l~l~G~~G~GKTHL-l~a~~~~~~-------------~~~~~v~y~~~~~~~~~~~~~~~~~~~~-d~LiiDDi-~~~ 109 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL-LQAACLRFE-------------QRGEPAVYLPLAELLDRGPELLDNLEQY-ELVCLDDL-DVI 109 (234)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHH-------------hCCCcEEEeeHHHHHhhhHHHHHhhhhC-CEEEEech-hhh
Confidence 5689999999999964 223332221 2245667777666654321111135577 88999999 765
Q ss_pred c
Q 031654 147 L 147 (155)
Q Consensus 147 l 147 (155)
-
T Consensus 110 ~ 110 (234)
T PRK05642 110 A 110 (234)
T ss_pred c
Confidence 3
No 182
>PF13245 AAA_19: Part of AAA domain
Probab=96.34 E-value=0.0065 Score=38.80 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=26.8
Q ss_pred HHHHhcCCc-EEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHH
Q 031654 60 TSILVAGRD-LMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRR 118 (155)
Q Consensus 60 i~~~l~g~d-vl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~ 118 (155)
+...+.+.. +++.+|+|||||...+--+...+.. .... +-.|+|.||.+
T Consensus 3 v~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~---------~~~~-~~~vlv~a~t~ 52 (76)
T PF13245_consen 3 VRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAA---------RADP-GKRVLVLAPTR 52 (76)
T ss_pred HHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHH---------hcCC-CCeEEEECCCH
Confidence 443333545 5559999999997653333222210 0111 45688888855
No 183
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.28 E-value=0.0096 Score=51.71 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=32.3
Q ss_pred hHHhCCCCCCCHHHHHHHHHHhcC--CcEEEEccCCCCcchhhhhHHHHHHH
Q 031654 43 KPRTYKYVKPTPVQRHATSILVAG--RDLMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 43 ~l~~~g~~~pt~iQ~~~i~~~l~g--~dvl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
.|.++|| .+-|...+..++.. .-+++++|||||||... ..++..+.
T Consensus 294 ~l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 294 DIDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred CHHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 4677786 56677777666543 46889999999999874 34555553
No 184
>PRK10436 hypothetical protein; Provisional
Probab=96.27 E-value=0.01 Score=50.33 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=31.5
Q ss_pred hHHhCCCCCCCHHHHHHHHHHhc--CCcEEEEccCCCCcchhhhhHHHHHHH
Q 031654 43 KPRTYKYVKPTPVQRHATSILVA--GRDLMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 43 ~l~~~g~~~pt~iQ~~~i~~~l~--g~dvl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
.|..+|+ .+-|...+..+.. +.-+++++|||||||... ..++..+.
T Consensus 196 ~L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 196 DLETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred CHHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 4567775 5667777766543 356999999999999864 34455553
No 185
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=96.22 E-value=0.0051 Score=50.09 Aligned_cols=35 Identities=23% Similarity=0.128 Sum_probs=30.9
Q ss_pred CCCCCCHHHHHHHHHHhcCC-cEEEEccCCCCcchh
Q 031654 48 KYVKPTPVQRHATSILVAGR-DLMACAQTGSRKTTP 82 (155)
Q Consensus 48 g~~~pt~iQ~~~i~~~l~g~-dvl~~a~TGsGKT~~ 82 (155)
.|...++-|...+-.+..++ |+++++.||||||..
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl 189 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL 189 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH
Confidence 57789999999998888775 999999999999974
No 186
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.20 E-value=0.005 Score=48.25 Aligned_cols=41 Identities=27% Similarity=0.155 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHh
Q 031654 52 PTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMRE 94 (155)
Q Consensus 52 pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~ 94 (155)
+|+-|.+++.. ...+++|.|+.|||||.+.+--++..+...
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~ 41 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEG 41 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccc
Confidence 47889998877 778999999999999998766655555443
No 187
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.0047 Score=55.26 Aligned_cols=35 Identities=20% Similarity=0.098 Sum_probs=27.9
Q ss_pred CCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccc
Q 031654 108 WVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQ 145 (155)
Q Consensus 108 ~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ 145 (155)
...|...|-|-|+.-+.+. +.|+.- ..+|+||| |.
T Consensus 349 ~T~IkFMTDGVLLrEi~~D-flL~kY-SvIIlDEA-HE 383 (1172)
T KOG0926|consen 349 DTSIKFMTDGVLLREIEND-FLLTKY-SVIILDEA-HE 383 (1172)
T ss_pred CceeEEecchHHHHHHHHh-Hhhhhc-eeEEechh-hh
Confidence 3579999999988877643 567778 89999999 64
No 188
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.15 E-value=0.016 Score=47.06 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
.++++.||+|+|||...
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 68999999999999753
No 189
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.14 E-value=0.023 Score=51.85 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=14.1
Q ss_pred cE-EEEccCCCCcchhhh
Q 031654 68 DL-MACAQTGSRKTTPFC 84 (155)
Q Consensus 68 dv-l~~a~TGsGKT~~yl 84 (155)
++ ++.|+||+|||++--
T Consensus 782 nvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVY 799 (1164)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 45 599999999999853
No 190
>PRK06921 hypothetical protein; Provisional
Probab=96.11 E-value=0.011 Score=46.51 Aligned_cols=66 Identities=18% Similarity=0.152 Sum_probs=38.6
Q ss_pred cCCcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHcC-------CCCcccccceE
Q 031654 65 AGRDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLERG-------RVSLQMIIRYL 137 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~~-------~~~l~~l~~~l 137 (155)
.+.++++.|++|+|||... ..++..+... .+..++..|...+...+... .-.+.++ .+|
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~------------~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~-dlL 181 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRK------------KGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKV-EVL 181 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhh------------cCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCC-CEE
Confidence 4678999999999999643 2333333221 04455555544443333211 1135678 899
Q ss_pred EEEccccc
Q 031654 138 ALKEAADQ 145 (155)
Q Consensus 138 VlDEa~D~ 145 (155)
||||+ +.
T Consensus 182 iIDDl-~~ 188 (266)
T PRK06921 182 FIDDL-FK 188 (266)
T ss_pred EEecc-cc
Confidence 99998 54
No 191
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.09 E-value=0.02 Score=54.97 Aligned_cols=33 Identities=36% Similarity=0.355 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHhcC--CcEEEEccCCCCcchhh
Q 031654 51 KPTPVQRHATSILVAG--RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g--~dvl~~a~TGsGKT~~y 83 (155)
.+++-|+.|+..++.+ +-+++++..|+|||...
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l 869 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF 869 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH
Confidence 6899999999999966 67999999999999763
No 192
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.08 E-value=0.01 Score=48.73 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=15.2
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
.++++.||+|+|||...
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999863
No 193
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.05 E-value=0.018 Score=50.80 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHH----hcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch
Q 031654 51 KPTPVQRHATSIL----VAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA 98 (155)
Q Consensus 51 ~pt~iQ~~~i~~~----l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~ 98 (155)
.|+.||...+..+ -.|+=-+..+|||||||++.+...+..|.......
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~eek~ 66 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDFEEKK 66 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHhHHhh
Confidence 6889998877654 47887788999999999999999999987765444
No 194
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.04 E-value=0.018 Score=46.72 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHhcC----CcEEEEccCCCCcchhhhhHHHHHHHHhhhc----h----HHHHHHHhcCCcEEEEChH--
Q 031654 52 PTPVQRHATSILVAG----RDLMACAQTGSRKTTPFCFPIINGIMREYYS----A----RKELRELARWVDNLMATLR-- 117 (155)
Q Consensus 52 pt~iQ~~~i~~~l~g----~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~----~----~~~~~~l~~~~~IlI~TP~-- 117 (155)
.+|+|...|..+... +-+++++|.|+|||..... +...+...... + ....-.-...||+.+-.|+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~ 82 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA 82 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC
Confidence 479999999888754 2588999999999865432 22233221110 0 1222222345788877763
Q ss_pred -------HHHHHHHcC--CCCcccccceEEEEcccccccc
Q 031654 118 -------RLVNLLERG--RVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 118 -------~l~~~l~~~--~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
.+.++...- .-....- +.+||||| |+|=.
T Consensus 83 ~~~i~id~iR~l~~~~~~~~~~~~~-kv~iI~~a-~~m~~ 120 (328)
T PRK05707 83 DKTIKVDQVRELVSFVVQTAQLGGR-KVVLIEPA-EAMNR 120 (328)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCC-eEEEECCh-hhCCH
Confidence 222222211 1123456 78999999 99854
No 195
>PRK09183 transposase/IS protein; Provisional
Probab=96.03 E-value=0.013 Score=45.92 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=39.0
Q ss_pred HhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHc----CCC------Cccc
Q 031654 63 LVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLER----GRV------SLQM 132 (155)
Q Consensus 63 ~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~----~~~------~l~~ 132 (155)
+-.|.++++.||+|+|||..... +...+ ...+..+...+...+...+.. +.+ .+..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~a-l~~~a-------------~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~ 164 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIA-LGYEA-------------VRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMA 164 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHH-HHHHH-------------HHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 45688999999999999964321 11111 123455655554444322211 110 1345
Q ss_pred ccceEEEEcccccc
Q 031654 133 IIRYLALKEAADQT 146 (155)
Q Consensus 133 l~~~lVlDEa~D~l 146 (155)
. .++|+||+ +.+
T Consensus 165 ~-dlLiiDdl-g~~ 176 (259)
T PRK09183 165 P-RLLIIDEI-GYL 176 (259)
T ss_pred C-CEEEEccc-ccC
Confidence 5 78999999 653
No 196
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=95.99 E-value=0.013 Score=42.14 Aligned_cols=78 Identities=12% Similarity=0.036 Sum_probs=45.3
Q ss_pred cCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------HHHHHHHh----------------cCCcEEEEChHH
Q 031654 65 AGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------RKELRELA----------------RWVDNLMATLRR 118 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------~~~~~~l~----------------~~~~IlI~TP~~ 118 (155)
.|+=.++-..+|+|||--.+.-++.......... .+..+.+. .+.-|=|.|.+.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at 82 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHAT 82 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHH
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHH
Confidence 3445677788999999987666665554433332 22222222 233456667777
Q ss_pred HHHHHHcCCCCcccccceEEEEccccc
Q 031654 119 LVNLLERGRVSLQMIIRYLALKEAADQ 145 (155)
Q Consensus 119 l~~~l~~~~~~l~~l~~~lVlDEa~D~ 145 (155)
+.+.+.+ .....+. +++|+||+ |.
T Consensus 83 ~~~~~~~-p~~~~~y-d~II~DEc-H~ 106 (148)
T PF07652_consen 83 YGHFLLN-PCRLKNY-DVIIMDEC-HF 106 (148)
T ss_dssp HHHHHHT-SSCTTS--SEEEECTT-T-
T ss_pred HHHHhcC-cccccCc-cEEEEecc-cc
Confidence 7666655 4456788 99999999 64
No 197
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.98 E-value=0.032 Score=45.21 Aligned_cols=97 Identities=16% Similarity=0.188 Sum_probs=55.8
Q ss_pred CCCCCHHHHHHHHHHh----cCC---cEEEEccCCCCcchhhhhHHHHHHHHhhhch-----HHHHHHHhcCCcEEEE--
Q 031654 49 YVKPTPVQRHATSILV----AGR---DLMACAQTGSRKTTPFCFPIINGIMREYYSA-----RKELRELARWVDNLMA-- 114 (155)
Q Consensus 49 ~~~pt~iQ~~~i~~~l----~g~---dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-----~~~~~~l~~~~~IlI~-- 114 (155)
+..++|+|..+|..+. +|+ -+++.+|.|+||+.... .+...+....... ..+.-.-.+.||+.+-
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~-~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~ 80 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL-ALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSF 80 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH-HHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEec
Confidence 4578999999998775 443 48999999999986542 2333333221110 1111122235788876
Q ss_pred ChHH---------HHHHHHc------CCCCcccccceEEEEcccccccc
Q 031654 115 TLRR---------LVNLLER------GRVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 115 TP~~---------l~~~l~~------~~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
.|+. -.+-++. ..-..... +.+|||+| |.|-.
T Consensus 81 ~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~-kV~iI~~a-e~m~~ 127 (319)
T PRK08769 81 IPNRTGDKLRTEIVIEQVREISQKLALTPQYGIA-QVVIVDPA-DAINR 127 (319)
T ss_pred CCCcccccccccccHHHHHHHHHHHhhCcccCCc-EEEEeccH-hhhCH
Confidence 5631 1222211 01123466 89999999 99854
No 198
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.93 E-value=0.022 Score=45.82 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=36.3
Q ss_pred CCcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHc----CC-----CCcccccce
Q 031654 66 GRDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLER----GR-----VSLQMIIRY 136 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~----~~-----~~l~~l~~~ 136 (155)
++.+++.|++|+|||.... .+.+.+. ..+..+.+.+-..+..-+.. +. -.+.++ .+
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~-------------~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~-dl 220 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELA-------------KKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEA-PV 220 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH-------------HcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCC-CE
Confidence 4689999999999986432 3333222 23444444433333333322 11 126788 99
Q ss_pred EEEEcc
Q 031654 137 LALKEA 142 (155)
Q Consensus 137 lVlDEa 142 (155)
|||||.
T Consensus 221 LiIDDi 226 (306)
T PRK08939 221 LMLDDI 226 (306)
T ss_pred EEEecC
Confidence 999998
No 199
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.88 E-value=0.02 Score=48.87 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=31.5
Q ss_pred hHHhCCCCCCCHHHHHHHHHHhcC-C-cEEEEccCCCCcchhhhhHHHHHHH
Q 031654 43 KPRTYKYVKPTPVQRHATSILVAG-R-DLMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 43 ~l~~~g~~~pt~iQ~~~i~~~l~g-~-dvl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
.|..+|+ ++-|...+..+... + -+++++|||||||... ..++..+.
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~ 267 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLN 267 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccC
Confidence 4667776 66777777766654 3 3789999999999864 23445443
No 200
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.84 E-value=0.0068 Score=48.08 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=14.6
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
.++++.+|+|+|||...
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999753
No 201
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.83 E-value=0.027 Score=46.55 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=17.1
Q ss_pred cCCcEEEEccCCCCcchhhh
Q 031654 65 AGRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yl 84 (155)
.|..+++++|||+|||....
T Consensus 136 ~g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 36789999999999998754
No 202
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.82 E-value=0.035 Score=44.01 Aligned_cols=71 Identities=21% Similarity=0.217 Sum_probs=38.9
Q ss_pred CCcEEEEccCCCCcchhhhhHHHHHHHHh-h-hch------------HHHHHHHhc--CCc-EEEEChHHHHHHHHcCCC
Q 031654 66 GRDLMACAQTGSRKTTPFCFPIINGIMRE-Y-YSA------------RKELRELAR--WVD-NLMATLRRLVNLLERGRV 128 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yllp~l~~l~~~-~-~~~------------~~~~~~l~~--~~~-IlI~TP~~l~~~l~~~~~ 128 (155)
++.+++++|||+|||....-- ...+... . ... ..+.....+ ++. ..+.+|..+...+..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kL-a~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~--- 269 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKL-AARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR--- 269 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHH-HHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH---
Confidence 457889999999999865322 2222221 1 111 222222221 222 344567766666652
Q ss_pred CcccccceEEEEcc
Q 031654 129 SLQMIIRYLALKEA 142 (155)
Q Consensus 129 ~l~~l~~~lVlDEa 142 (155)
+.+. +++++|.+
T Consensus 270 -~~~~-d~vliDt~ 281 (282)
T TIGR03499 270 -LRDK-DLILIDTA 281 (282)
T ss_pred -ccCC-CEEEEeCC
Confidence 3457 88999975
No 203
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.75 E-value=0.011 Score=46.07 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
.++++.+|+|||||...
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 58999999999999864
No 204
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.74 E-value=0.024 Score=43.25 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=42.8
Q ss_pred cEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHH----HcCCC-----CcccccceEE
Q 031654 68 DLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLL----ERGRV-----SLQMIIRYLA 138 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l----~~~~~-----~l~~l~~~lV 138 (155)
-+++.|++|+|||. -+-.+.+.+ .....+..|+..+...+.+.+ ..+.. .+... ++|+
T Consensus 36 ~l~l~G~~G~GKTH-LL~Ai~~~~-----------~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-DlL~ 102 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH-LLQAIANEA-----------QKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSA-DLLI 102 (219)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHH-----------HHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTS-SEEE
T ss_pred ceEEECCCCCCHHH-HHHHHHHHH-----------HhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcC-CEEE
Confidence 48999999999998 233333322 223345678888877665433 22221 36778 9999
Q ss_pred EEcccccccc
Q 031654 139 LKEAADQTLD 148 (155)
Q Consensus 139 lDEa~D~ll~ 148 (155)
||++ |.+-.
T Consensus 103 iDDi-~~l~~ 111 (219)
T PF00308_consen 103 IDDI-QFLAG 111 (219)
T ss_dssp EETG-GGGTT
T ss_pred Eecc-hhhcC
Confidence 9999 87754
No 205
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.74 E-value=0.022 Score=48.18 Aligned_cols=67 Identities=10% Similarity=-0.020 Sum_probs=40.6
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHc------CCC-----Ccccccc
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLER------GRV-----SLQMIIR 135 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~------~~~-----~l~~l~~ 135 (155)
..+++.|++|+|||.-. -.+.+.+. ....+..++..|++.+...+.. +.+ .+.++ .
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~-----------~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~-d 208 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIE-----------SNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQN-D 208 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHH-----------HhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccC-C
Confidence 45899999999999421 23332222 1223566777777665544321 111 14567 8
Q ss_pred eEEEEccccccc
Q 031654 136 YLALKEAADQTL 147 (155)
Q Consensus 136 ~lVlDEa~D~ll 147 (155)
+|||||+ +.+-
T Consensus 209 vLiIDDi-q~l~ 219 (450)
T PRK14087 209 VLIIDDV-QFLS 219 (450)
T ss_pred EEEEecc-cccc
Confidence 9999999 7664
No 206
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.73 E-value=0.033 Score=43.78 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=31.0
Q ss_pred HhHHhCCCCCCCHHHHHHHHHHhc--CCcEEEEccCCCCcchhhhhHHHHHH
Q 031654 42 NKPRTYKYVKPTPVQRHATSILVA--GRDLMACAQTGSRKTTPFCFPIINGI 91 (155)
Q Consensus 42 ~~l~~~g~~~pt~iQ~~~i~~~l~--g~dvl~~a~TGsGKT~~yllp~l~~l 91 (155)
..|.++|+ .+-|.+.+..++. +.-++++++||||||... -.++..+
T Consensus 57 ~~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 57 LDLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred CCHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 34677775 5667777765553 346899999999999864 3344444
No 207
>CHL00181 cbbX CbbX; Provisional
Probab=95.73 E-value=0.016 Score=46.21 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCcchhhh
Q 031654 66 GRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yl 84 (155)
|.++++.+|+|||||...-
T Consensus 59 ~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5579999999999998653
No 208
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.73 E-value=0.017 Score=46.90 Aligned_cols=45 Identities=27% Similarity=0.131 Sum_probs=30.1
Q ss_pred HHhCCCCCCCHHHHHHHHHH-hcCCcEEEEccCCCCcchhhhhHHHHHH
Q 031654 44 PRTYKYVKPTPVQRHATSIL-VAGRDLMACAQTGSRKTTPFCFPIINGI 91 (155)
Q Consensus 44 l~~~g~~~pt~iQ~~~i~~~-l~g~dvl~~a~TGsGKT~~yllp~l~~l 91 (155)
+.+.|. .++.|...+..+ ..+.+++++++||||||... -.++..+
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i 168 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEI 168 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 334443 567777766544 45689999999999999753 3344444
No 209
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.025 Score=48.77 Aligned_cols=73 Identities=12% Similarity=0.233 Sum_probs=38.7
Q ss_pred cCccccccCCcCcccCCC--------CCCCCCcccccCC-----HHHHHhHHhC---CCCCCCHHHHHHHHHHhcCCcEE
Q 031654 7 ADSVFASENAAPASSSTN--------TLSSPAARFAYVP-----QHLRNKPRTY---KYVKPTPVQRHATSILVAGRDLM 70 (155)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~--------~~p~~~~~f~~l~-----~~l~~~l~~~---g~~~pt~iQ~~~i~~~l~g~dvl 70 (155)
..+.|.+.++-.++..+. ..-.|-..|++++ .+.-..+++. ..-.|--+.+..|+++ +-++
T Consensus 184 T~i~F~k~~~s~lnL~~~~~~k~~~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HV---KGiL 260 (744)
T KOG0741|consen 184 TQIVFEKAENSSLNLIGKSKTKPASNSIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHV---KGIL 260 (744)
T ss_pred cEEEEEeccCcceEeeccccccchhccccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccce---eeEE
Confidence 344555554444443333 2224556788887 3333333221 1113333333333333 5799
Q ss_pred EEccCCCCcchh
Q 031654 71 ACAQTGSRKTTP 82 (155)
Q Consensus 71 ~~a~TGsGKT~~ 82 (155)
..+|+|+|||+.
T Consensus 261 LyGPPGTGKTLi 272 (744)
T KOG0741|consen 261 LYGPPGTGKTLI 272 (744)
T ss_pred EECCCCCChhHH
Confidence 999999999995
No 210
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.68 E-value=0.047 Score=47.00 Aligned_cols=43 Identities=23% Similarity=0.095 Sum_probs=30.1
Q ss_pred CCCCCCHHHHHHHHHHh----cCCcEEEEccCCCCcchhhhhHHHHH
Q 031654 48 KYVKPTPVQRHATSILV----AGRDLMACAQTGSRKTTPFCFPIING 90 (155)
Q Consensus 48 g~~~pt~iQ~~~i~~~l----~g~dvl~~a~TGsGKT~~yllp~l~~ 90 (155)
-|..-+|-|..=.-.+. .+.+.++..|+|+|||.+.+--++..
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aY 59 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAY 59 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHH
Confidence 35667788876554442 44688999999999999866444443
No 211
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.64 E-value=0.028 Score=46.67 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=39.5
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHH----cCC-----CCcccccceE
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLE----RGR-----VSLQMIIRYL 137 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~----~~~-----~~l~~l~~~l 137 (155)
..+++.|++|+|||... -.+.+.+... ..+..++..|...+...+. .+. -.+.++ ++|
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~-----------~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dlL 203 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILEN-----------NPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSV-DLL 203 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHh-----------CCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhC-CEE
Confidence 35899999999999743 2333333221 1235566666655433221 111 124567 899
Q ss_pred EEEcccccccc
Q 031654 138 ALKEAADQTLD 148 (155)
Q Consensus 138 VlDEa~D~ll~ 148 (155)
||||+ |.+..
T Consensus 204 iiDDi-~~l~~ 213 (405)
T TIGR00362 204 LIDDI-QFLAG 213 (405)
T ss_pred EEehh-hhhcC
Confidence 99999 87653
No 212
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.63 E-value=0.03 Score=44.31 Aligned_cols=81 Identities=20% Similarity=0.081 Sum_probs=44.7
Q ss_pred cCCc-EEEEccCCCCcchhhhhHHHHHHHHhhhc-h-------HHHHHHHhcCCcEEEEChHHH----------HHHHHc
Q 031654 65 AGRD-LMACAQTGSRKTTPFCFPIINGIMREYYS-A-------RKELRELARWVDNLMATLRRL----------VNLLER 125 (155)
Q Consensus 65 ~g~d-vl~~a~TGsGKT~~yllp~l~~l~~~~~~-~-------~~~~~~l~~~~~IlI~TP~~l----------~~~l~~ 125 (155)
++.. +++.+|+|+|||.+... +...+...... . ..........++++.-+|... .++...
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~-lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~ 100 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALA-LAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEF 100 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHH-HHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHH
Confidence 3456 99999999999987543 22333211110 0 111122223467777776432 222222
Q ss_pred CCCC--cccccceEEEEcccccccc
Q 031654 126 GRVS--LQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 126 ~~~~--l~~l~~~lVlDEa~D~ll~ 148 (155)
.... .... +.++|||| |.|-.
T Consensus 101 ~~~~~~~~~~-kviiidea-d~mt~ 123 (325)
T COG0470 101 LSESPLEGGY-KVVIIDEA-DKLTE 123 (325)
T ss_pred hccCCCCCCc-eEEEeCcH-HHHhH
Confidence 2222 2567 89999999 99864
No 213
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.61 E-value=0.0051 Score=49.28 Aligned_cols=79 Identities=16% Similarity=0.142 Sum_probs=43.8
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEECh-----HHHHHH----HHc------------
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATL-----RRLVNL----LER------------ 125 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP-----~~l~~~----l~~------------ 125 (155)
.+++++|+|+.|||.. +.++........+ ..-..-|=++|-+| .++... +.-
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d--~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~ 134 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSD--EDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLE 134 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCC--CCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHH
Confidence 5999999999999983 4555443222110 00001133444444 122111 110
Q ss_pred ----CCCCcccccceEEEEcccccccccccccC
Q 031654 126 ----GRVSLQMIIRYLALKEAADQTLDMALNQK 154 (155)
Q Consensus 126 ----~~~~l~~l~~~lVlDEa~D~ll~~gf~~~ 154 (155)
..+.--.+ ++|||||+ |.+|.....+|
T Consensus 135 ~~~~~llr~~~v-rmLIIDE~-H~lLaGs~~~q 165 (302)
T PF05621_consen 135 QQVLRLLRRLGV-RMLIIDEF-HNLLAGSYRKQ 165 (302)
T ss_pred HHHHHHHHHcCC-cEEEeech-HHHhcccHHHH
Confidence 11223466 99999999 99998776554
No 214
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.56 E-value=0.034 Score=46.88 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=40.8
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHH----cCCC-----Cc-ccccce
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLE----RGRV-----SL-QMIIRY 136 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~----~~~~-----~l-~~l~~~ 136 (155)
..+++.||+|+|||.-. -.+.+.+. ....+..++..|...+..-+. .+.. .+ ..+ ++
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~-----------~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~-dv 197 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVV-----------QNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKV-DV 197 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHH-----------HhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcC-CE
Confidence 46999999999999742 22222221 111245677777776544332 1211 01 257 89
Q ss_pred EEEEcccccccc
Q 031654 137 LALKEAADQTLD 148 (155)
Q Consensus 137 lVlDEa~D~ll~ 148 (155)
|++||+ |.+.+
T Consensus 198 LlIDDi-~~l~~ 208 (440)
T PRK14088 198 LLIDDV-QFLIG 208 (440)
T ss_pred EEEech-hhhcC
Confidence 999999 98764
No 215
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.015 Score=48.74 Aligned_cols=62 Identities=21% Similarity=0.171 Sum_probs=39.5
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHH-----------HHHHHHcCCCCcccccc
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRR-----------LVNLLERGRVSLQMIIR 135 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~-----------l~~~l~~~~~~l~~l~~ 135 (155)
+|++..+|+|+|||++.- . -....|-|..+.|-|- ++.++.....+-..+
T Consensus 385 RNilfyGPPGTGKTm~Ar-----e------------lAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGL-- 445 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFAR-----E------------LARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGL-- 445 (630)
T ss_pred hheeeeCCCCCCchHHHH-----H------------HHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccce--
Confidence 699999999999999641 0 1112344555555432 344444444445556
Q ss_pred eEEEEcccccccc
Q 031654 136 YLALKEAADQTLD 148 (155)
Q Consensus 136 ~lVlDEa~D~ll~ 148 (155)
+|.|||| |..|.
T Consensus 446 llFIDEA-DAFLc 457 (630)
T KOG0742|consen 446 LLFIDEA-DAFLC 457 (630)
T ss_pred EEEehhh-HHHHH
Confidence 7889999 98874
No 216
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.023 Score=47.86 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCCcchh
Q 031654 66 GRDLMACAQTGSRKTTP 82 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~ 82 (155)
..||++.+|||||||+-
T Consensus 226 KSNvLllGPtGsGKTll 242 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLL 242 (564)
T ss_pred cccEEEECCCCCchhHH
Confidence 34899999999999984
No 217
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.48 E-value=0.025 Score=49.27 Aligned_cols=104 Identities=7% Similarity=-0.151 Sum_probs=73.4
Q ss_pred HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-------------------
Q 031654 38 QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA------------------- 98 (155)
Q Consensus 38 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------------------- 98 (155)
+.+.+.+..+--+....+|..++..+-+|+++.+...|.+||.++|.+.....+.......
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 352 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQV 352 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceE
Confidence 5555666677677889999999999999999999999999999998876655443222111
Q ss_pred ----------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCC----CCcccccceEEEEcc
Q 031654 99 ----------------------RKELRELARWVDNLMATLRRLVNLLERGR----VSLQMIIRYLALKEA 142 (155)
Q Consensus 99 ----------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~----~~l~~l~~~lVlDEa 142 (155)
.....-.+.+..++.+.|.....-.--+. ..+-.. .+++.||.
T Consensus 353 V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~-~~~~~~~~ 421 (1034)
T KOG4150|consen 353 VHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEE-LCKDTNSC 421 (1034)
T ss_pred EEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHH-HHhcccce
Confidence 33334445688999999988765443332 223344 57788887
No 218
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.44 E-value=0.013 Score=47.24 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=15.4
Q ss_pred CcEEEEccCCCCcchhhh
Q 031654 67 RDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yl 84 (155)
..+++.+|+|+|||....
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 579999999999998643
No 219
>PRK04296 thymidine kinase; Provisional
Probab=95.44 E-value=0.016 Score=43.22 Aligned_cols=75 Identities=11% Similarity=0.043 Sum_probs=37.5
Q ss_pred CCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---H---HH---HHHHhc--C---CcEEEEChHHHHHHHHcCCCCcc
Q 031654 66 GRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---R---KE---LRELAR--W---VDNLMATLRRLVNLLERGRVSLQ 131 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---~---~~---~~~l~~--~---~~IlI~TP~~l~~~l~~~~~~l~ 131 (155)
|.=+++.+|+|+|||...+ -.+.++....... + +. ...+.. + ..+.+..+..+.+.+.. .-.
T Consensus 2 g~i~litG~~GsGKTT~~l-~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~---~~~ 77 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELL-QRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE---EGE 77 (190)
T ss_pred cEEEEEECCCCCHHHHHHH-HHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh---hCC
Confidence 3346789999999997543 3333333222111 0 00 000111 1 11223445555555543 234
Q ss_pred cccceEEEEcccccc
Q 031654 132 MIIRYLALKEAADQT 146 (155)
Q Consensus 132 ~l~~~lVlDEa~D~l 146 (155)
+. .+|||||| +.+
T Consensus 78 ~~-dvviIDEa-q~l 90 (190)
T PRK04296 78 KI-DCVLIDEA-QFL 90 (190)
T ss_pred CC-CEEEEEcc-ccC
Confidence 56 78999999 543
No 220
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=95.43 E-value=0.036 Score=51.06 Aligned_cols=35 Identities=9% Similarity=0.233 Sum_probs=25.7
Q ss_pred CcEEEEChHHHHHHHHcC---CCCcccccceEEEEcccccc
Q 031654 109 VDNLMATLRRLVNLLERG---RVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 109 ~~IlI~TP~~l~~~l~~~---~~~l~~l~~~lVlDEa~D~l 146 (155)
-.|+|+|=.++-...... ...-.++ .+|+||| |+-
T Consensus 351 ~~ii~TTIQKf~~~~~~~~~~~~~~~~i--vvI~DEa-HRS 388 (962)
T COG0610 351 GKIIVTTIQKFNKAVKEDELELLKRKNV--VVIIDEA-HRS 388 (962)
T ss_pred CcEEEEEecccchhhhcccccccCCCcE--EEEEech-hhc
Confidence 389999999988877664 1233444 7889999 873
No 221
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.41 E-value=0.031 Score=47.09 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=39.1
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHH----cCC-----CCcccccceE
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLE----RGR-----VSLQMIIRYL 137 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~----~~~-----~~l~~l~~~l 137 (155)
..+++.||+|+|||... -.+.+.+.. ...+..++..|...+...+. .+. -.+.++ .+|
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~-----------~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dlL 215 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILE-----------KNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSV-DVL 215 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHH-----------hCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcC-CEE
Confidence 45999999999999743 222222221 11145566666655433221 111 124567 899
Q ss_pred EEEccccccc
Q 031654 138 ALKEAADQTL 147 (155)
Q Consensus 138 VlDEa~D~ll 147 (155)
||||+ |.+-
T Consensus 216 iiDDi-~~l~ 224 (450)
T PRK00149 216 LIDDI-QFLA 224 (450)
T ss_pred EEehh-hhhc
Confidence 99999 8764
No 222
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=95.41 E-value=0.044 Score=48.96 Aligned_cols=94 Identities=15% Similarity=0.120 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHH----hcCCcEEEEccCCCCcchhhhhHHHHHHHHhhh--ch--------------------------
Q 031654 51 KPTPVQRHATSIL----VAGRDLMACAQTGSRKTTPFCFPIINGIMREYY--SA-------------------------- 98 (155)
Q Consensus 51 ~pt~iQ~~~i~~~----l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~--~~-------------------------- 98 (155)
.+.+.|.+.+..+ -+|-|.+..-.-|-|||+-- +..+..+..... ..
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~ 245 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKRFTPSLNV 245 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHHhCCCcce
Confidence 4556666654433 47889999999999999753 444444433111 11
Q ss_pred ------HHHHHHHh------cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccc
Q 031654 99 ------RKELRELA------RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 99 ------~~~~~~l~------~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
+.+...+. ...+|+|+|-+-.+.- ...+.--.- +|+||||| |++=+.
T Consensus 246 ~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W-~ylvIDEa-HRiKN~ 304 (971)
T KOG0385|consen 246 VVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNW-RYLVIDEA-HRIKNE 304 (971)
T ss_pred EEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCc-eEEEechh-hhhcch
Confidence 22222222 2689999998765432 112222334 78999999 998654
No 223
>PHA02244 ATPase-like protein
Probab=95.38 E-value=0.1 Score=43.16 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=18.5
Q ss_pred HHHhcCCcEEEEccCCCCcchh
Q 031654 61 SILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 61 ~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
..+..+.++++.+|||+|||..
T Consensus 114 r~l~~~~PVLL~GppGtGKTtL 135 (383)
T PHA02244 114 KIVNANIPVFLKGGAGSGKNHI 135 (383)
T ss_pred HHHhcCCCEEEECCCCCCHHHH
Confidence 3456779999999999999974
No 224
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.37 E-value=0.059 Score=44.82 Aligned_cols=75 Identities=11% Similarity=0.098 Sum_probs=42.3
Q ss_pred CCcEEEEccCCCCcchhhhhHHHHHHHHh----hhch------------HHHHHHHhc--CCcEE-EEChHHHHHHHHcC
Q 031654 66 GRDLMACAQTGSRKTTPFCFPIINGIMRE----YYSA------------RKELRELAR--WVDNL-MATLRRLVNLLERG 126 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yllp~l~~l~~~----~~~~------------~~~~~~l~~--~~~Il-I~TP~~l~~~l~~~ 126 (155)
++.+++++|||+|||.+..--+ .++... .... ..|.+...+ +..+. +.++..+...+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA-~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~- 251 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLA-AIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ- 251 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH-
Confidence 3578999999999998754211 122111 1111 344444433 33333 3355555554442
Q ss_pred CCCcccccceEEEEccccccc
Q 031654 127 RVSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 127 ~~~l~~l~~~lVlDEa~D~ll 147 (155)
+.+. .++++|++ .++.
T Consensus 252 ---~~~~-DlVLIDTa-Gr~~ 267 (388)
T PRK12723 252 ---SKDF-DLVLVDTI-GKSP 267 (388)
T ss_pred ---hCCC-CEEEEcCC-CCCc
Confidence 3567 89999999 7765
No 225
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.34 E-value=0.028 Score=45.02 Aligned_cols=46 Identities=24% Similarity=0.189 Sum_probs=29.5
Q ss_pred hHHhCCCCCCCHHHHHHHHHH-hcCCcEEEEccCCCCcchhhhhHHHHHH
Q 031654 43 KPRTYKYVKPTPVQRHATSIL-VAGRDLMACAQTGSRKTTPFCFPIINGI 91 (155)
Q Consensus 43 ~l~~~g~~~pt~iQ~~~i~~~-l~g~dvl~~a~TGsGKT~~yllp~l~~l 91 (155)
.+.+.| ..++-|...+..+ ..+++++++++||||||... -.++..+
T Consensus 110 ~l~~~g--~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i 156 (299)
T TIGR02782 110 DYVEAG--IMTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEI 156 (299)
T ss_pred HHHhcC--CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHh
Confidence 344445 3455566655544 45689999999999999853 3344444
No 226
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.34 E-value=0.029 Score=44.53 Aligned_cols=18 Identities=22% Similarity=0.154 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
+.++++.+|+|||||...
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 458999999999999765
No 227
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.32 E-value=0.069 Score=44.51 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=39.8
Q ss_pred CCcEEEEccCCCCcchhhh-hHHHHHHHHhhhch------------HHHHH---HHhcCCcEEEEChHHHHHHHHcCCCC
Q 031654 66 GRDLMACAQTGSRKTTPFC-FPIINGIMREYYSA------------RKELR---ELARWVDNLMATLRRLVNLLERGRVS 129 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yl-lp~l~~l~~~~~~~------------~~~~~---~l~~~~~IlI~TP~~l~~~l~~~~~~ 129 (155)
++-+...||||-|||..-+ |+............ .+|.+ .+.+-|=.++-+|.-|.+.+. .
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~----~ 278 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIE----A 278 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHH----H
Confidence 7889999999999998743 22222111111111 33333 333344455666666655554 4
Q ss_pred cccccceEEEEcc
Q 031654 130 LQMIIRYLALKEA 142 (155)
Q Consensus 130 l~~l~~~lVlDEa 142 (155)
+.++ +++.+|=|
T Consensus 279 l~~~-d~ILVDTa 290 (407)
T COG1419 279 LRDC-DVILVDTA 290 (407)
T ss_pred hhcC-CEEEEeCC
Confidence 5556 66666654
No 228
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.30 E-value=0.033 Score=43.08 Aligned_cols=60 Identities=20% Similarity=0.134 Sum_probs=32.0
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEE----EChHHHHHHHHcCCCCcccccceEEEEcc
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLM----ATLRRLVNLLERGRVSLQMIIRYLALKEA 142 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI----~TP~~l~~~l~~~~~~l~~l~~~lVlDEa 142 (155)
.+++..+|+|+|||.-.- +.. ..+...+++.- .-++.+...+.+ +..= ..|.+||+
T Consensus 51 ~h~lf~GPPG~GKTTLA~------IIA---------~e~~~~~~~~sg~~i~k~~dl~~il~~----l~~~-~ILFIDEI 110 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLAR------IIA---------NELGVNFKITSGPAIEKAGDLAAILTN----LKEG-DILFIDEI 110 (233)
T ss_dssp -EEEEESSTTSSHHHHHH------HHH---------HHCT--EEEEECCC--SCHHHHHHHHT------TT--EEEECTC
T ss_pred ceEEEECCCccchhHHHH------HHH---------hccCCCeEeccchhhhhHHHHHHHHHh----cCCC-cEEEEech
Confidence 369999999999997432 221 22222222222 234556666553 3444 67899999
Q ss_pred ccccc
Q 031654 143 ADQTL 147 (155)
Q Consensus 143 ~D~ll 147 (155)
|+|=
T Consensus 111 -HRln 114 (233)
T PF05496_consen 111 -HRLN 114 (233)
T ss_dssp -CC--
T ss_pred -hhcc
Confidence 9873
No 229
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.26 E-value=0.048 Score=46.12 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=41.3
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHH----cCCC-----CcccccceE
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLE----RGRV-----SLQMIIRYL 137 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~----~~~~-----~l~~l~~~l 137 (155)
..+++.||+|+|||.-. -.+.+.+.. .+..++..+...+.+.+. .+.. .+.++ .+|
T Consensus 142 npl~L~G~~G~GKTHLl-~Ai~~~l~~-------------~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~-dvL 206 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM-QAAVHALRE-------------SGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNV-DAL 206 (445)
T ss_pred ceEEEEcCCCCCHHHHH-HHHHHHHHH-------------cCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccC-CEE
Confidence 45999999999999742 233332221 256777777766544332 2211 14677 899
Q ss_pred EEEcccccccc
Q 031654 138 ALKEAADQTLD 148 (155)
Q Consensus 138 VlDEa~D~ll~ 148 (155)
++||+ +.+-.
T Consensus 207 iIDDi-q~l~~ 216 (445)
T PRK12422 207 FIEDI-EVFSG 216 (445)
T ss_pred EEcch-hhhcC
Confidence 99999 87643
No 230
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.22 E-value=0.072 Score=51.79 Aligned_cols=32 Identities=31% Similarity=0.264 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHhcC--CcEEEEccCCCCcchh
Q 031654 51 KPTPVQRHATSILVAG--RDLMACAQTGSRKTTP 82 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g--~dvl~~a~TGsGKT~~ 82 (155)
.+++.|..|+..++.+ +-+++++..|+|||..
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~ 1000 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ 1000 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH
Confidence 6899999999999986 5688999999999976
No 231
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.21 E-value=0.086 Score=52.00 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHhcC--CcEEEEccCCCCcchh
Q 031654 51 KPTPVQRHATSILVAG--RDLMACAQTGSRKTTP 82 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g--~dvl~~a~TGsGKT~~ 82 (155)
.+++-|+.++..++.+ +=.++.++.|+|||..
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~ 462 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI 462 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH
Confidence 5789999999999876 5688899999999975
No 232
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.20 E-value=0.054 Score=43.27 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=14.4
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
.+++.||+|+|||...
T Consensus 38 ~lll~Gp~GtGKT~la 53 (337)
T PRK12402 38 HLLVQGPPGSGKTAAV 53 (337)
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999764
No 233
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.18 E-value=0.056 Score=53.22 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHhcC--CcEEEEccCCCCcchhh
Q 031654 50 VKPTPVQRHATSILVAG--RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 50 ~~pt~iQ~~~i~~~l~g--~dvl~~a~TGsGKT~~y 83 (155)
..+++.|+.|+..++.+ +-++++++.|+|||...
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l 1053 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTML 1053 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhH
Confidence 36899999999999876 45778899999999764
No 234
>PLN03025 replication factor C subunit; Provisional
Probab=95.15 E-value=0.015 Score=46.72 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=14.6
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
.+++++||+|+|||...
T Consensus 35 ~~lll~Gp~G~GKTtla 51 (319)
T PLN03025 35 PNLILSGPPGTGKTTSI 51 (319)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47999999999999654
No 235
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=95.09 E-value=0.028 Score=50.28 Aligned_cols=44 Identities=16% Similarity=0.069 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHhcC---C-cEEEEccCCCCcchhhhhHHHHHHHHh
Q 031654 51 KPTPVQRHATSILVAG---R-DLMACAQTGSRKTTPFCFPIINGIMRE 94 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g---~-dvl~~a~TGsGKT~~yllp~l~~l~~~ 94 (155)
.+.+.|..++..+.++ . .+++.||||.|||.+.+.++...+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~ 242 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK 242 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc
Confidence 3488999999888755 4 789999999999999999988877763
No 236
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.07 E-value=0.0088 Score=45.28 Aligned_cols=14 Identities=29% Similarity=0.359 Sum_probs=12.4
Q ss_pred EEEEccCCCCcchh
Q 031654 69 LMACAQTGSRKTTP 82 (155)
Q Consensus 69 vl~~a~TGsGKT~~ 82 (155)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999985
No 237
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.07 E-value=0.076 Score=44.63 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCcchhhh
Q 031654 66 GRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yl 84 (155)
|+.+++.+|||+|||....
T Consensus 221 ~~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLA 239 (424)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5678999999999997644
No 238
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=95.02 E-value=0.012 Score=52.82 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=24.9
Q ss_pred CcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccc
Q 031654 109 VDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 109 ~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
.+-++..-+.|..+. .-.+.+. ++|||||+ ...+..
T Consensus 122 ~~rLivqIdSL~R~~---~~~l~~y-DvVIIDEv-~svL~q 157 (824)
T PF02399_consen 122 YDRLIVQIDSLHRLD---GSLLDRY-DVVIIDEV-MSVLNQ 157 (824)
T ss_pred cCeEEEEehhhhhcc---ccccccc-CEEEEehH-HHHHHH
Confidence 356677766665443 2245667 89999999 888766
No 239
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=0.051 Score=46.82 Aligned_cols=47 Identities=19% Similarity=0.322 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCC-CCc--chhhhhHHHHHHHHhhh
Q 031654 50 VKPTPVQRHATSILVAGRDLMACAQTG-SRK--TTPFCFPIINGIMREYY 96 (155)
Q Consensus 50 ~~pt~iQ~~~i~~~l~g~dvl~~a~TG-sGK--T~~yllp~l~~l~~~~~ 96 (155)
..+|+.|.+.+..+.+.+|++....|- .|+ +-.|++-+++++.+...
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~ 264 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRD 264 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHH
Confidence 367999999999999999998654332 344 45689999999886543
No 240
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.98 E-value=0.048 Score=44.39 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=18.0
Q ss_pred HHhcCCcEEEEccCCCCcchh
Q 031654 62 ILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 62 ~~l~g~dvl~~a~TGsGKT~~ 82 (155)
++..+++++++++||||||..
T Consensus 156 ~v~~~~nili~G~tgSGKTTl 176 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTF 176 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHH
Confidence 445679999999999999975
No 241
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.98 E-value=0.04 Score=45.92 Aligned_cols=51 Identities=12% Similarity=0.149 Sum_probs=29.1
Q ss_pred CcccccCC--HHHHHhHHhC---CCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhh
Q 031654 30 AARFAYVP--QHLRNKPRTY---KYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 30 ~~~f~~l~--~~l~~~l~~~---g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~y 83 (155)
-.+|++++ +...+.+++. -+.+|...+..- +..++.+++.+|+|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 35788877 4444444332 122222222111 123578999999999999853
No 242
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.97 E-value=0.058 Score=48.11 Aligned_cols=91 Identities=24% Similarity=0.206 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------------HHHHHHHhc--CCcE
Q 031654 50 VKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------------RKELRELAR--WVDN 111 (155)
Q Consensus 50 ~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------------~~~~~~l~~--~~~I 111 (155)
..+++-|.+++.+ ...+++|.|..|||||.+-.--+...+....... .+.+..+.. ...+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~~~~~ 80 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGTSARGM 80 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhcccccCc
Confidence 4689999998854 3468999999999999885444443333211111 122222211 2468
Q ss_pred EEEChHHHHH-HHHcCC--CCcccccceEEEEccccc
Q 031654 112 LMATLRRLVN-LLERGR--VSLQMIIRYLALKEAADQ 145 (155)
Q Consensus 112 lI~TP~~l~~-~l~~~~--~~l~~l~~~lVlDEa~D~ 145 (155)
.|+|-..+.. ++++.. ..+. - .+-|+|+. |.
T Consensus 81 ~i~TfHs~~~~iLr~~~~~~g~~-~-~f~i~d~~-d~ 114 (715)
T TIGR01075 81 WIGTFHGLAHRLLRAHHLDAGLP-Q-DFQILDSD-DQ 114 (715)
T ss_pred EEEcHHHHHHHHHHHHHHHhCCC-C-CCeecCHH-HH
Confidence 8999887654 343321 1111 1 24577887 65
No 243
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=94.90 E-value=0.031 Score=42.89 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=34.0
Q ss_pred HHHHHHHh-cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEc
Q 031654 99 RKELRELA-RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKE 141 (155)
Q Consensus 99 ~~~~~~l~-~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDE 141 (155)
..+...+. +..++-||||+|+..+++.+.++++.+ +++|+|=
T Consensus 186 ~~~~k~~k~~~v~~gIgTp~Ri~~lv~~~~f~~~~l-k~iIlD~ 228 (271)
T KOG3089|consen 186 QAQVKLLKKRVVHLGIGTPGRIKELVKQGGFNLSPL-KFIILDW 228 (271)
T ss_pred HHHHHHHhhcceeEeecCcHHHHHHHHhcCCCCCcc-eeEEeec
Confidence 33444443 368999999999999999999999999 9999883
No 244
>PRK04195 replication factor C large subunit; Provisional
Probab=94.79 E-value=0.097 Score=44.55 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
.+.+++.||+|+|||...
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999753
No 245
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.78 E-value=0.11 Score=46.13 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCCcchh
Q 031654 55 VQRHATSILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 55 iQ~~~i~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
.+.+.+..+...+-|++.+.||||||.-
T Consensus 360 ~R~~ll~~ir~n~vvvivgETGSGKTTQ 387 (1042)
T KOG0924|consen 360 CRDQLLSVIRENQVVVIVGETGSGKTTQ 387 (1042)
T ss_pred HHHHHHHHHhhCcEEEEEecCCCCchhh
Confidence 4444444555667789999999999985
No 246
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.78 E-value=0.029 Score=45.89 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=18.5
Q ss_pred HHHhcCCcEEEEccCCCCcchh
Q 031654 61 SILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 61 ~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
-++..+++++++++||||||..
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTl 178 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTM 178 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHH
Confidence 3455779999999999999975
No 247
>PF13479 AAA_24: AAA domain
Probab=94.73 E-value=0.018 Score=43.64 Aligned_cols=75 Identities=13% Similarity=0.018 Sum_probs=48.1
Q ss_pred CCcEEEEccCCCCcchhhhhHHHHHHHHhhhch------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEE
Q 031654 66 GRDLMACAQTGSRKTTPFCFPIINGIMREYYSA------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLAL 139 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVl 139 (155)
+-.+++.+++|+|||....- + ..... ......+.....+-|.++..+.+.+..-.-..... +.|||
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~-----~--~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y-~tiVI 74 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS-----L--PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADY-DTIVI 74 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh-----C--CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCC-CEEEE
Confidence 34689999999999974321 1 11111 11233343556777889999988775321226678 89999
Q ss_pred Eccccccccc
Q 031654 140 KEAADQTLDM 149 (155)
Q Consensus 140 DEa~D~ll~~ 149 (155)
|-+ +.|.++
T Consensus 75 Dsi-s~~~~~ 83 (213)
T PF13479_consen 75 DSI-SWLEDM 83 (213)
T ss_pred ECH-HHHHHH
Confidence 999 887654
No 248
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.66 E-value=0.26 Score=43.98 Aligned_cols=90 Identities=20% Similarity=0.154 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------------HHHHHHHhcCCcEEE
Q 031654 50 VKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------------RKELRELARWVDNLM 113 (155)
Q Consensus 50 ~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------------~~~~~~l~~~~~IlI 113 (155)
..+++-|+.|+- ....+++|.|..|||||.+.+--+...+....... .+.+........|-|
T Consensus 195 ~~L~~~Q~~av~--~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~~v~v 272 (684)
T PRK11054 195 SPLNPSQARAVV--NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTEDITA 272 (684)
T ss_pred CCCCHHHHHHHh--CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCCCcEE
Confidence 468999999874 23357899999999999886544433333221111 111122122347889
Q ss_pred EChHHHHH-HHHcCCCCcccccceEEEEcc
Q 031654 114 ATLRRLVN-LLERGRVSLQMIIRYLALKEA 142 (155)
Q Consensus 114 ~TP~~l~~-~l~~~~~~l~~l~~~lVlDEa 142 (155)
+|--.+.. +++...-....+ .-+..|+.
T Consensus 273 ~TFHSlal~Il~~~~~~~p~~-s~~~~d~~ 301 (684)
T PRK11054 273 RTFHALALHIIQQGSKKVPVI-SKLENDSK 301 (684)
T ss_pred EeHHHHHHHHHHHhhhcCCCc-CccccchH
Confidence 99887753 444321112233 33445554
No 249
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.60 E-value=0.017 Score=48.58 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.2
Q ss_pred CcEEEEccCCCCcchhhhhHHH
Q 031654 67 RDLMACAQTGSRKTTPFCFPII 88 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l 88 (155)
.++++.||||||||.+|++|.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~l 66 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNL 66 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHH
Confidence 4799999999999999999976
No 250
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.59 E-value=0.013 Score=48.27 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.4
Q ss_pred cEEEEccCCCCcchhhhhHHHH
Q 031654 68 DLMACAQTGSRKTTPFCFPIIN 89 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yllp~l~ 89 (155)
++++.|+||||||.++++|-+-
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll 22 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLL 22 (384)
T ss_pred CeeEecCCCCCCccEEEccchh
Confidence 4789999999999999999654
No 251
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.48 E-value=0.12 Score=42.21 Aligned_cols=32 Identities=25% Similarity=0.125 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHhc--C---CcEEEEccCCCCcchhh
Q 031654 52 PTPVQRHATSILVA--G---RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 52 pt~iQ~~~i~~~l~--g---~dvl~~a~TGsGKT~~y 83 (155)
.+|+|...|..+.+ | +-+++.||.|.||+...
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA 38 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA 38 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH
Confidence 36888888887753 3 36889999999998754
No 252
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.46 E-value=0.06 Score=39.85 Aligned_cols=33 Identities=27% Similarity=0.307 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHH-hcCCcEEEEccCCCCcchhh
Q 031654 51 KPTPVQRHATSIL-VAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 51 ~pt~iQ~~~i~~~-l~g~dvl~~a~TGsGKT~~y 83 (155)
..++-|...+... ..|..+++++|||||||...
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 4556666666544 46789999999999999753
No 253
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.46 E-value=0.093 Score=46.40 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCCcchh
Q 031654 54 PVQRHATSILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 54 ~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
+.-.+.+.++....=++|.+.||||||.-
T Consensus 268 ~ykdell~av~e~QVLiI~GeTGSGKTTQ 296 (902)
T KOG0923|consen 268 PYKDELLKAVKEHQVLIIVGETGSGKTTQ 296 (902)
T ss_pred hhHHHHHHHHHhCcEEEEEcCCCCCcccc
Confidence 33344556666778899999999999985
No 254
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.42 E-value=0.091 Score=46.12 Aligned_cols=67 Identities=16% Similarity=0.128 Sum_probs=40.6
Q ss_pred cEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHH----cCC-----CCcccccceEE
Q 031654 68 DLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLE----RGR-----VSLQMIIRYLA 138 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~----~~~-----~~l~~l~~~lV 138 (155)
.+++.+++|+|||.-. -.+.+.+ .....+..++..|.+.+.+.+. .+. -.+.++ .+||
T Consensus 316 pL~LyG~sGsGKTHLL-~AIa~~a-----------~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~-DLLl 382 (617)
T PRK14086 316 PLFIYGESGLGKTHLL-HAIGHYA-----------RRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREM-DILL 382 (617)
T ss_pred cEEEECCCCCCHHHHH-HHHHHHH-----------HHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcC-CEEE
Confidence 4899999999999732 2222222 2222356677777766553332 111 124567 8999
Q ss_pred EEcccccccc
Q 031654 139 LKEAADQTLD 148 (155)
Q Consensus 139 lDEa~D~ll~ 148 (155)
|||+ +.+..
T Consensus 383 IDDI-q~l~g 391 (617)
T PRK14086 383 VDDI-QFLED 391 (617)
T ss_pred Eehh-ccccC
Confidence 9999 87754
No 255
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.40 E-value=0.12 Score=43.17 Aligned_cols=79 Identities=11% Similarity=0.031 Sum_probs=42.4
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhh-------hchHHHHHHHhcCCcEEEEChHH-------HHHHHHcC--CCCc
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREY-------YSARKELRELARWVDNLMATLRR-------LVNLLERG--RVSL 130 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~-------~~~~~~~~~l~~~~~IlI~TP~~-------l~~~l~~~--~~~l 130 (155)
+-+++.+|.|+|||.....- ...+.... .........-...||+.+.+|+. +.+++..- .-..
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~l-A~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~ 115 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAF-AAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPST 115 (394)
T ss_pred eEEEEECCCCCcHHHHHHHH-HHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCccc
Confidence 46899999999998654322 22222211 00011122223467887777742 22222211 1123
Q ss_pred ccccceEEEEcccccccc
Q 031654 131 QMIIRYLALKEAADQTLD 148 (155)
Q Consensus 131 ~~l~~~lVlDEa~D~ll~ 148 (155)
... +.++|||+ |+|-.
T Consensus 116 ~~~-kViiIDea-d~m~~ 131 (394)
T PRK07940 116 GRW-RIVVIEDA-DRLTE 131 (394)
T ss_pred CCc-EEEEEech-hhcCH
Confidence 466 78999999 99854
No 256
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.35 E-value=0.024 Score=38.14 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
+..+++.+|+|||||...
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 567999999999999864
No 257
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.27 E-value=0.17 Score=40.98 Aligned_cols=95 Identities=15% Similarity=0.107 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHh----cCC---cEEEEccCCCCcchhhhhHHHHHHHHhhh---ch----HHHHHHHhcCCcEEEECh
Q 031654 51 KPTPVQRHATSILV----AGR---DLMACAQTGSRKTTPFCFPIINGIMREYY---SA----RKELRELARWVDNLMATL 116 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l----~g~---dvl~~a~TGsGKT~~yllp~l~~l~~~~~---~~----~~~~~~l~~~~~IlI~TP 116 (155)
.++|+|...|..+. +|+ -++++||.|.||+.... .+...+..... .+ ..+.-.-...||+.+-.|
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~-~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVE-LFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKP 81 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH-HHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec
Confidence 45788888887765 343 68999999999985432 22222322111 01 222222234688888777
Q ss_pred HH---------HHHHHHc--CCCCcccccceEEEEcccccccc
Q 031654 117 RR---------LVNLLER--GRVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 117 ~~---------l~~~l~~--~~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
+. +.++... ..-..... |.+|||+| |+|-.
T Consensus 82 ~~~~~~I~vdqiR~l~~~~~~~~~~~~~-kV~iI~~a-e~m~~ 122 (319)
T PRK06090 82 EKEGKSITVEQIRQCNRLAQESSQLNGY-RLFVIEPA-DAMNE 122 (319)
T ss_pred CcCCCcCCHHHHHHHHHHHhhCcccCCc-eEEEecch-hhhCH
Confidence 41 1111111 11234567 89999999 99854
No 258
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.25 E-value=0.19 Score=41.94 Aligned_cols=20 Identities=35% Similarity=0.317 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCCcchhhh
Q 031654 65 AGRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yl 84 (155)
.++-+++++|+|+|||....
T Consensus 205 ~~~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLV 224 (407)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45778999999999997654
No 259
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.23 E-value=0.047 Score=38.25 Aligned_cols=15 Identities=40% Similarity=0.426 Sum_probs=13.0
Q ss_pred EEEEccCCCCcchhh
Q 031654 69 LMACAQTGSRKTTPF 83 (155)
Q Consensus 69 vl~~a~TGsGKT~~y 83 (155)
+++.+++|+|||...
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 678999999999854
No 260
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.20 E-value=0.23 Score=44.11 Aligned_cols=40 Identities=25% Similarity=0.202 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHH
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
.+++-|++++.+ ....++|.|+.|||||.+-.--+...+.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~ 41 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIR 41 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHH
Confidence 478999998864 3467889999999999986555555443
No 261
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.16 Score=44.61 Aligned_cols=59 Identities=10% Similarity=0.106 Sum_probs=37.7
Q ss_pred cCCCCCCCCCcccccCC--HHHHHhHHhC--CCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchh
Q 031654 21 SSTNTLSSPAARFAYVP--QHLRNKPRTY--KYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 21 ~~~~~~p~~~~~f~~l~--~~l~~~l~~~--g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
+.+...|.+-.+|++++ +..+..|.++ .+.+|-..++.. +.--+-|++++|+|+|||.-
T Consensus 177 ~~~~~~~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lG---v~PprGvLlHGPPGCGKT~l 239 (802)
T KOG0733|consen 177 VEGLEFPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLG---VRPPRGVLLHGPPGCGKTSL 239 (802)
T ss_pred hcccCCCCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcC---CCCCCceeeeCCCCccHHHH
Confidence 34455566566899998 4444444433 255665554432 12237899999999999974
No 262
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=94.17 E-value=0.18 Score=46.69 Aligned_cols=32 Identities=25% Similarity=0.082 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHhc--------CCcEEEEccCCCCcchhh
Q 031654 52 PTPVQRHATSILVA--------GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 52 pt~iQ~~~i~~~l~--------g~dvl~~a~TGsGKT~~y 83 (155)
-..+|-.|+..+.. |--+|--|.||+|||++=
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN 448 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN 448 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH
Confidence 35689999887753 335667799999999973
No 263
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.16 E-value=0.043 Score=42.53 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=13.2
Q ss_pred HHHHHHhcCCcEEEEChHHHHHHHH
Q 031654 100 KELRELARWVDNLMATLRRLVNLLE 124 (155)
Q Consensus 100 ~~~~~l~~~~~IlI~TP~~l~~~l~ 124 (155)
++.... +..-+++.|||++.-+..
T Consensus 84 ~~i~~~-~~~y~l~DtPGQiElf~~ 107 (238)
T PF03029_consen 84 EEIEKY-EDDYLLFDTPGQIELFTH 107 (238)
T ss_dssp HHHHHH-H-SEEEEE--SSHHHHHH
T ss_pred HHHhhc-CCcEEEEeCCCCEEEEEe
Confidence 444444 347899999999654443
No 264
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=94.13 E-value=0.033 Score=47.78 Aligned_cols=35 Identities=20% Similarity=0.146 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHhcC---CcEEEEccCCCCcchhhhh
Q 031654 51 KPTPVQRHATSILVAG---RDLMACAQTGSRKTTPFCF 85 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g---~dvl~~a~TGsGKT~~yll 85 (155)
.+.|-|..++..++.. +.=+++-|-|+|||+.-+-
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvT 339 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVT 339 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeee
Confidence 3678999999988743 6888899999999987543
No 265
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.10 E-value=0.038 Score=49.39 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
+.+++.+|+|+|||+.
T Consensus 488 ~giLL~GppGtGKT~l 503 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLL 503 (733)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5699999999999985
No 266
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.08 E-value=0.17 Score=43.54 Aligned_cols=78 Identities=15% Similarity=-0.023 Sum_probs=39.4
Q ss_pred cEEEEccCCCCcchhhhhHHHHHHHHhhh---ch----HHHHHHHhcCCcEEEEChH------HHHHHHHc--CCCCccc
Q 031654 68 DLMACAQTGSRKTTPFCFPIINGIMREYY---SA----RKELRELARWVDNLMATLR------RLVNLLER--GRVSLQM 132 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yllp~l~~l~~~~~---~~----~~~~~~l~~~~~IlI~TP~------~l~~~l~~--~~~~l~~ 132 (155)
-+++++|+|+|||.+... +...+..... .+ ......-...++++.-.+. .+.++... ..-....
T Consensus 38 a~Lf~GppGtGKTTlA~~-lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~ 116 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARL-IAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGG 116 (504)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCC
Confidence 359999999999987542 3333332110 00 1111111224566654442 11222111 0112356
Q ss_pred ccceEEEEcccccccc
Q 031654 133 IIRYLALKEAADQTLD 148 (155)
Q Consensus 133 l~~~lVlDEa~D~ll~ 148 (155)
- +++||||+ |.|-.
T Consensus 117 ~-kVVIIDEa-d~ls~ 130 (504)
T PRK14963 117 R-KVYILDEA-HMMSK 130 (504)
T ss_pred C-eEEEEECc-cccCH
Confidence 7 89999999 98743
No 267
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.06 E-value=0.15 Score=37.05 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=42.5
Q ss_pred cEEEEccCCCCcchhhhhHHHHHHHHhhhch-------HHHHHHHhcCCcEEEEChHHH---------HHHHHcCCC--C
Q 031654 68 DLMACAQTGSRKTTPFCFPIINGIMREYYSA-------RKELRELARWVDNLMATLRRL---------VNLLERGRV--S 129 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------~~~~~~l~~~~~IlI~TP~~l---------~~~l~~~~~--~ 129 (155)
-+++.+|.|+||+.... ..+..+....... ..........+|+.+..|..- .++...-.. .
T Consensus 21 a~L~~G~~g~gk~~~a~-~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~ 99 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLAL-AFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSPS 99 (162)
T ss_dssp EEEEECSTTSSHHHHHH-HHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-T
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHHHh
Confidence 57999999999876543 2333333322210 222222234688888877532 222222111 1
Q ss_pred cccccceEEEEcccccccc
Q 031654 130 LQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 130 l~~l~~~lVlDEa~D~ll~ 148 (155)
-..- +.+||||| |.|-.
T Consensus 100 ~~~~-KviiI~~a-d~l~~ 116 (162)
T PF13177_consen 100 EGKY-KVIIIDEA-DKLTE 116 (162)
T ss_dssp TSSS-EEEEEETG-GGS-H
T ss_pred cCCc-eEEEeehH-hhhhH
Confidence 2457 89999999 98854
No 268
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.06 E-value=0.1 Score=44.45 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=14.2
Q ss_pred cEEEEccCCCCcchhhh
Q 031654 68 DLMACAQTGSRKTTPFC 84 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yl 84 (155)
.++++||+|+|||....
T Consensus 38 ~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 38 AYIFAGPRGTGKTTVAR 54 (472)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37999999999997653
No 269
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.04 E-value=0.049 Score=42.65 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=21.6
Q ss_pred HHHHHHhcCCcEEEEccCCCCcchhh
Q 031654 58 HATSILVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 58 ~~i~~~l~g~dvl~~a~TGsGKT~~y 83 (155)
++...+..|+++++.+|+|+|||...
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 44556678899999999999999864
No 270
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.02 E-value=0.13 Score=41.87 Aligned_cols=94 Identities=21% Similarity=0.165 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHh----cCC---cEEEEccCCCCcchhhhhHHHHHHHHhh-h---ch----HHHHHHHhcCCcEEEECh
Q 031654 52 PTPVQRHATSILV----AGR---DLMACAQTGSRKTTPFCFPIINGIMREY-Y---SA----RKELRELARWVDNLMATL 116 (155)
Q Consensus 52 pt~iQ~~~i~~~l----~g~---dvl~~a~TGsGKT~~yllp~l~~l~~~~-~---~~----~~~~~~l~~~~~IlI~TP 116 (155)
.+|+|...|..+. +|+ -.++.||.|+||+.... .+...+.... . .+ ..+.-.-...||+..-+|
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~-~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIY-ALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP 81 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHH-HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec
Confidence 4788888887764 343 57899999999986543 2223332211 1 01 222222334689988888
Q ss_pred HH---------HHHHHHc--CCCCcccccceEEEEcccccccc
Q 031654 117 RR---------LVNLLER--GRVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 117 ~~---------l~~~l~~--~~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
+. +.++.+. ..-....- +.+|||+| |+|=.
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~-kV~iI~~a-e~m~~ 122 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGA-KVVWLPDA-ALLTD 122 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCc-eEEEEcch-HhhCH
Confidence 52 1111111 11123566 89999999 99854
No 271
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.01 E-value=0.2 Score=40.65 Aligned_cols=91 Identities=13% Similarity=0.073 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHh--cCC---cEEEEccCCCCcchhhhhHHHHHHHHhhh-----ch----HHHHHHHhcCCcEEEEChHH
Q 031654 53 TPVQRHATSILV--AGR---DLMACAQTGSRKTTPFCFPIINGIMREYY-----SA----RKELRELARWVDNLMATLRR 118 (155)
Q Consensus 53 t~iQ~~~i~~~l--~g~---dvl~~a~TGsGKT~~yllp~l~~l~~~~~-----~~----~~~~~~l~~~~~IlI~TP~~ 118 (155)
+|+|...|..+. .|+ -+++.||.|.|||.....- ...+..... .+ ....-.-...||+..-+|+.
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~-a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~ 81 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA-AQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLS 81 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH-HHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccc
Confidence 688888888776 332 5889999999998764322 222221111 11 22222233468998888731
Q ss_pred ----------------HHHHHHcCC--CCcccccceEEEEcccccc
Q 031654 119 ----------------LVNLLERGR--VSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 119 ----------------l~~~l~~~~--~~l~~l~~~lVlDEa~D~l 146 (155)
+.++...-. -....- +.+|+|++ |.|
T Consensus 82 ~~~~~g~~~~~I~id~iR~l~~~~~~~p~~~~~-kV~iiEp~-~~L 125 (325)
T PRK08699 82 DEPENGRKLLQIKIDAVREIIDNVYLTSVRGGL-RVILIHPA-ESM 125 (325)
T ss_pred ccccccccCCCcCHHHHHHHHHHHhhCcccCCc-eEEEEech-hhC
Confidence 122221111 123556 77888888 776
No 272
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.99 E-value=0.16 Score=41.20 Aligned_cols=95 Identities=9% Similarity=0.052 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHh----cC---CcEEEEccCCCCcchhhhhHHHHHHHHhh-h---ch--HHHHHHH--hcCCcEEEECh
Q 031654 52 PTPVQRHATSILV----AG---RDLMACAQTGSRKTTPFCFPIINGIMREY-Y---SA--RKELREL--ARWVDNLMATL 116 (155)
Q Consensus 52 pt~iQ~~~i~~~l----~g---~dvl~~a~TGsGKT~~yllp~l~~l~~~~-~---~~--~~~~~~l--~~~~~IlI~TP 116 (155)
.+|+|...|..+. +| +-.++.||.|.||+..... +...+.... . .+ -...+.+ ...||+.+-.|
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~-~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRA-LAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHH-HHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 3688888887664 44 3577999999999865432 223333211 1 11 1222222 34688887777
Q ss_pred H--------HHHHHHHc--CCCCcccccceEEEEccccccccc
Q 031654 117 R--------RLVNLLER--GRVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 117 ~--------~l~~~l~~--~~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
. .+.++... ..-.-..- +.+|||+| |+|=..
T Consensus 82 ~~~~~I~id~iR~l~~~~~~~~~~g~~-KV~iI~~a-~~m~~~ 122 (325)
T PRK06871 82 IDNKDIGVDQVREINEKVSQHAQQGGN-KVVYIQGA-ERLTEA 122 (325)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCc-eEEEEech-hhhCHH
Confidence 3 11111111 11123466 88999999 998643
No 273
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=93.98 E-value=0.029 Score=49.70 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.2
Q ss_pred CcEEEEccCCCCcchhhhhHHHHH
Q 031654 67 RDLMACAQTGSRKTTPFCFPIING 90 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~ 90 (155)
.++++.||||||||.+|++|-+-.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~ 163 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLT 163 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhc
Confidence 589999999999999999996543
No 274
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.96 E-value=0.18 Score=37.15 Aligned_cols=79 Identities=13% Similarity=0.057 Sum_probs=40.1
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhh----ch----HHHHHHHhcCCcEEEECh-------HHHHHHHHcC--CCC
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYY----SA----RKELRELARWVDNLMATL-------RRLVNLLERG--RVS 129 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~----~~----~~~~~~l~~~~~IlI~TP-------~~l~~~l~~~--~~~ 129 (155)
..+++.+|+|+|||.... -+...+..... .+ ..........+|+.+..+ +.+.+++..- .-.
T Consensus 15 ~~~L~~G~~G~gkt~~a~-~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 93 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLAL-ALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQ 93 (188)
T ss_pred eEEEEECCCCCCHHHHHH-HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcc
Confidence 358899999999986532 22233322100 00 111111122355554443 3333333221 112
Q ss_pred cccccceEEEEcccccccc
Q 031654 130 LQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 130 l~~l~~~lVlDEa~D~ll~ 148 (155)
...- +.+||||+ |.|-.
T Consensus 94 ~~~~-kviiide~-~~l~~ 110 (188)
T TIGR00678 94 ESGR-RVVIIEDA-ERMNE 110 (188)
T ss_pred cCCe-EEEEEech-hhhCH
Confidence 3566 89999999 99854
No 275
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.86 E-value=0.13 Score=46.02 Aligned_cols=91 Identities=22% Similarity=0.175 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------------HHHHHHHhc--CCcE
Q 031654 50 VKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------------RKELRELAR--WVDN 111 (155)
Q Consensus 50 ~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------------~~~~~~l~~--~~~I 111 (155)
..+++-|.+++-+ ....++|.|..|||||.+-.--+...+....... .+....+.. ...+
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~~~~~ 85 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTSQGGM 85 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccCCCCC
Confidence 3589999998853 3468999999999999885544443332211111 122222211 2357
Q ss_pred EEEChHHHHHH-HHcCC--CCcccccceEEEEccccc
Q 031654 112 LMATLRRLVNL-LERGR--VSLQMIIRYLALKEAADQ 145 (155)
Q Consensus 112 lI~TP~~l~~~-l~~~~--~~l~~l~~~lVlDEa~D~ 145 (155)
.|+|--.+..- ++... ..+. - .+-|+|+. |+
T Consensus 86 ~i~TfHs~~~~iLr~~~~~~g~~-~-~f~i~d~~-d~ 119 (721)
T PRK11773 86 WVGTFHGLAHRLLRAHWQDANLP-Q-DFQILDSD-DQ 119 (721)
T ss_pred EEEcHHHHHHHHHHHHHHHhCCC-C-CCeecCHH-HH
Confidence 89998877543 33321 1111 1 35577876 64
No 276
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.82 E-value=0.17 Score=41.47 Aligned_cols=17 Identities=24% Similarity=0.134 Sum_probs=14.1
Q ss_pred cEEEEccCCCCcchhhh
Q 031654 68 DLMACAQTGSRKTTPFC 84 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yl 84 (155)
-+++.||.|+|||....
T Consensus 40 ~~L~~Gp~G~GKTtla~ 56 (363)
T PRK14961 40 AWLLSGTRGVGKTTIAR 56 (363)
T ss_pred EEEEecCCCCCHHHHHH
Confidence 36899999999998653
No 277
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.81 E-value=0.18 Score=43.16 Aligned_cols=81 Identities=10% Similarity=0.024 Sum_probs=42.7
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhc-----hHHHHHHHh--cCCcEEEEChH------HHHHHHHcC-CC-Ccc
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYS-----ARKELRELA--RWVDNLMATLR------RLVNLLERG-RV-SLQ 131 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~-----~~~~~~~l~--~~~~IlI~TP~------~l~~~l~~~-~~-~l~ 131 (155)
+.++.+||.|+|||.+..+-+-......... .......+. ..+|++-..+. .+.+++..- .. ...
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~ 115 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISS 115 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccC
Confidence 3689999999999986543221111111110 022223332 35677765552 233333221 11 235
Q ss_pred cccceEEEEccccccccc
Q 031654 132 MIIRYLALKEAADQTLDM 149 (155)
Q Consensus 132 ~l~~~lVlDEa~D~ll~~ 149 (155)
+- +.+||||+ |.|-..
T Consensus 116 ~~-KVvIIDEa-h~Ls~~ 131 (491)
T PRK14964 116 KF-KVYIIDEV-HMLSNS 131 (491)
T ss_pred Cc-eEEEEeCh-HhCCHH
Confidence 67 89999999 876543
No 278
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.80 E-value=0.082 Score=47.66 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=40.8
Q ss_pred cCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----HHHHHHHhcCCc-EEEEChHHHHHHHHcCCCCcccccceEEE
Q 031654 65 AGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----RKELRELARWVD-NLMATLRRLVNLLERGRVSLQMIIRYLAL 139 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----~~~~~~l~~~~~-IlI~TP~~l~~~l~~~~~~l~~l~~~lVl 139 (155)
.|..++..+|+|+|||...- .+...+....... ......+..... .+=..|+++.+.+.... ..- ..+++
T Consensus 346 ~~~~lll~GppG~GKT~lAk-~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~---~~~-~vill 420 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGK-SIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAK---TKN-PLFLL 420 (775)
T ss_pred CCceEEEECCCCCCHHHHHH-HHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhC---cCC-CEEEE
Confidence 34679999999999997532 2222221110000 111222222122 23345778776665321 122 46899
Q ss_pred Ecccccccc
Q 031654 140 KEAADQTLD 148 (155)
Q Consensus 140 DEa~D~ll~ 148 (155)
||+ |++..
T Consensus 421 DEi-dk~~~ 428 (775)
T TIGR00763 421 DEI-DKIGS 428 (775)
T ss_pred ech-hhcCC
Confidence 999 99963
No 279
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.76 E-value=0.19 Score=42.16 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=15.8
Q ss_pred CcEEEEccCCCCcchhhhh
Q 031654 67 RDLMACAQTGSRKTTPFCF 85 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yll 85 (155)
+.+++++|||+|||.....
T Consensus 242 ~vI~LVGptGvGKTTTiaK 260 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAK 260 (436)
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 5788999999999987543
No 280
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.73 E-value=0.14 Score=40.82 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=12.1
Q ss_pred cEEE-EccCCCCcchh
Q 031654 68 DLMA-CAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~-~a~TGsGKT~~ 82 (155)
++++ .||+|+|||..
T Consensus 44 ~~lll~G~~G~GKT~l 59 (316)
T PHA02544 44 NMLLHSPSPGTGKTTV 59 (316)
T ss_pred eEEEeeCcCCCCHHHH
Confidence 4555 89999999975
No 281
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.73 E-value=0.037 Score=43.76 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.2
Q ss_pred HHhcCCcEEEEccCCCCcchh
Q 031654 62 ILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 62 ~~l~g~dvl~~a~TGsGKT~~ 82 (155)
.+.+++.++++||+|+|||..
T Consensus 29 l~~~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 29 LLSNGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp HHHCTEEEEEESSTTSSHHHH
T ss_pred HHHcCCcEEEECCCCCchhHH
Confidence 345779999999999999985
No 282
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=93.71 E-value=0.34 Score=42.75 Aligned_cols=70 Identities=19% Similarity=0.079 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhh--hch--------------HHHHHH-Hh--cCCcEE
Q 031654 52 PTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREY--YSA--------------RKELRE-LA--RWVDNL 112 (155)
Q Consensus 52 pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~--~~~--------------~~~~~~-l~--~~~~Il 112 (155)
+++-|.+++.. ...+++|.|+.|||||.+-+--+...+.... +.. ...... +. ....+-
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~~~~~v~ 79 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKGEARGLT 79 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCccccCCeE
Confidence 68889998754 3568999999999999886655555553321 111 111211 11 134688
Q ss_pred EEChHHHHHHH
Q 031654 113 MATLRRLVNLL 123 (155)
Q Consensus 113 I~TP~~l~~~l 123 (155)
|+|-.++...+
T Consensus 80 v~TfHs~a~~i 90 (664)
T TIGR01074 80 ISTFHTLGLDI 90 (664)
T ss_pred EEeHHHHHHHH
Confidence 99998886544
No 283
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=93.67 E-value=0.032 Score=48.92 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.5
Q ss_pred CcEEEEccCCCCcchhhhhHHHHH
Q 031654 67 RDLMACAQTGSRKTTPFCFPIING 90 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~ 90 (155)
.++++.||||||||.+|++|-+-.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~ 182 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLF 182 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHh
Confidence 589999999999999999997654
No 284
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.66 E-value=0.094 Score=43.50 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=14.6
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
+.+++.||+|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 6799999999999975
No 285
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.60 E-value=0.18 Score=39.92 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=14.2
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
.+++.||+|+|||...
T Consensus 40 ~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 40 HLLFAGPPGTGKTTAA 55 (319)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5999999999999764
No 286
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.49 E-value=0.11 Score=46.24 Aligned_cols=22 Identities=9% Similarity=-0.012 Sum_probs=15.0
Q ss_pred EccCCCCcchhhhhHHHHHHHH
Q 031654 72 CAQTGSRKTTPFCFPIINGIMR 93 (155)
Q Consensus 72 ~a~TGsGKT~~yllp~l~~l~~ 93 (155)
.+.+|||||..|+-.+-..+..
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~ 187 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRA 187 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHc
Confidence 3346999999997655554443
No 287
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.42 E-value=0.25 Score=39.78 Aligned_cols=79 Identities=9% Similarity=-0.001 Sum_probs=39.6
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhh----ch----HHHHHHHhcCCcEEEEChH------HHHHHHHc--CCCCc
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYY----SA----RKELRELARWVDNLMATLR------RLVNLLER--GRVSL 130 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~----~~----~~~~~~l~~~~~IlI~TP~------~l~~~l~~--~~~~l 130 (155)
+.+++.||+|+|||... ..+...+..... .+ ....-.....++++.-.+. .+.+++.. ..-..
T Consensus 37 ~~~Ll~G~~G~GKt~~a-~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~ 115 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA-RIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSS 115 (355)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCccc
Confidence 35789999999999653 223333322110 00 1111111223566654432 22333332 11123
Q ss_pred ccccceEEEEcccccccc
Q 031654 131 QMIIRYLALKEAADQTLD 148 (155)
Q Consensus 131 ~~l~~~lVlDEa~D~ll~ 148 (155)
..- +.+||||| |.|-+
T Consensus 116 ~~~-~vviidea-~~l~~ 131 (355)
T TIGR02397 116 GKY-KVYIIDEV-HMLSK 131 (355)
T ss_pred CCc-eEEEEeCh-hhcCH
Confidence 455 78999999 98844
No 288
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.40 E-value=0.039 Score=43.07 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=21.4
Q ss_pred hcCCcEEEEccCCCCcchhhhhHHHHHHHH
Q 031654 64 VAGRDLMACAQTGSRKTTPFCFPIINGIMR 93 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~yllp~l~~l~~ 93 (155)
..+.+++++|+||||||... -.++..+..
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~ 153 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPP 153 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHT
T ss_pred ccceEEEEECCCccccchHH-HHHhhhccc
Confidence 45689999999999999864 444444443
No 289
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.32 E-value=0.13 Score=46.00 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=28.6
Q ss_pred CcccccCC--HHHHHhHHhC---CCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchh
Q 031654 30 AARFAYVP--QHLRNKPRTY---KYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 30 ~~~f~~l~--~~l~~~l~~~---g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
-.+|+++. +..++.+.++ -+.+|.-.+.. .+..++.+++.+|+|||||..
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~---gi~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHL---GIEPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhc---CCCCCceEEEECCCCCChHHH
Confidence 35788877 5555555432 11121111111 113457899999999999974
No 290
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=93.26 E-value=0.034 Score=49.03 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.9
Q ss_pred CcEEEEccCCCCcchhhhhHHHH
Q 031654 67 RDLMACAQTGSRKTTPFCFPIIN 89 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~ 89 (155)
.++++.||||||||.++++|-+-
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL 198 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLL 198 (636)
T ss_pred ceEEEEecCCCCCceEEEccchh
Confidence 68999999999999999999764
No 291
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.22 E-value=0.11 Score=49.18 Aligned_cols=40 Identities=33% Similarity=0.372 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHH
Q 031654 52 PTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMR 93 (155)
Q Consensus 52 pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~ 93 (155)
.|+-|.++|- ..|++++|.|..|||||.+-+--++..+..
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~ 41 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILR 41 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhc
Confidence 5889999996 478999999999999999876666665543
No 292
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=93.17 E-value=0.12 Score=46.67 Aligned_cols=93 Identities=19% Similarity=0.105 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------------------------------
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------------------------------- 98 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------------------------------- 98 (155)
+|..+|... .+.-...-++.-.||-|||++..+|+.-..+.+....
T Consensus 80 ~~~dVQliG--~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~ 157 (822)
T COG0653 80 RHFDVQLLG--GIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILA 157 (822)
T ss_pred ChhhHHHhh--hhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccC
Confidence 455566553 3333344567889999999999999766555444322
Q ss_pred --HHHHHHHhcCCcEEEEChHHH-HHHHHcC------CCCcccccceEEEEccccccc
Q 031654 99 --RKELRELARWVDNLMATLRRL-VNLLERG------RVSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 99 --~~~~~~l~~~~~IlI~TP~~l-~~~l~~~------~~~l~~l~~~lVlDEa~D~ll 147 (155)
....+.-.-.|||..+|-..+ .++++-+ ..-...+ .|-|+||+ |-+|
T Consensus 158 ~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~-~faIvDEv-DSIL 213 (822)
T COG0653 158 GMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGL-NFAIVDEV-DSIL 213 (822)
T ss_pred CCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccC-CeEEEcch-hhee
Confidence 122222233589999998776 2222221 1224467 89999999 9876
No 293
>PF14516 AAA_35: AAA-like domain
Probab=93.15 E-value=0.3 Score=39.58 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhc-CCcEEEEccCCCCcchhhhhHHHHHHHH
Q 031654 54 PVQRHATSILVA-GRDLMACAQTGSRKTTPFCFPIINGIMR 93 (155)
Q Consensus 54 ~iQ~~~i~~~l~-g~dvl~~a~TGsGKT~~yllp~l~~l~~ 93 (155)
|+.+.++..+.+ |.-+.+.||-.+|||.. +.-+++++.+
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKTSl-l~~l~~~l~~ 57 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKTSL-LLRLLERLQQ 57 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHHHH-HHHHHHHHHH
Confidence 588999999987 99999999999999975 3455555544
No 294
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.14 E-value=0.16 Score=43.73 Aligned_cols=81 Identities=14% Similarity=0.062 Sum_probs=40.3
Q ss_pred cEEEEccCCCCcchhhhhHHHHHHHH-hhhc-----hHHHHHHHhc--CCcEEEEChHH------HHHHHHcCCC--Ccc
Q 031654 68 DLMACAQTGSRKTTPFCFPIINGIMR-EYYS-----ARKELRELAR--WVDNLMATLRR------LVNLLERGRV--SLQ 131 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yllp~l~~l~~-~~~~-----~~~~~~~l~~--~~~IlI~TP~~------l~~~l~~~~~--~l~ 131 (155)
-.+.+||.|+|||.+..+-+ ..+.. .... .......+.. .+|++--.+.. +.+++..-.. .-.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lA-k~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~ 118 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRILA-KCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKG 118 (509)
T ss_pred eEEEECCCCCCHHHHHHHHH-HHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccC
Confidence 46899999999997654322 22211 1100 0122223322 34565555431 2222221111 123
Q ss_pred cccceEEEEccccccccccc
Q 031654 132 MIIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 132 ~l~~~lVlDEa~D~ll~~gf 151 (155)
+- +.+||||| |.|-...|
T Consensus 119 ~~-kV~iIDE~-~~ls~~a~ 136 (509)
T PRK14958 119 RF-KVYLIDEV-HMLSGHSF 136 (509)
T ss_pred Cc-EEEEEECh-HhcCHHHH
Confidence 56 78999999 87755443
No 295
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.11 E-value=0.28 Score=44.23 Aligned_cols=19 Identities=37% Similarity=0.331 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCcchhhh
Q 031654 66 GRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yl 84 (155)
|+=+.+++|||+|||.+..
T Consensus 185 g~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTA 203 (767)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3447889999999998754
No 296
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.06 E-value=0.4 Score=41.64 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|+.+.+++|||+|||...
T Consensus 349 ~G~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTI 367 (559)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678889999999999875
No 297
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=92.99 E-value=0.051 Score=48.19 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.4
Q ss_pred CcEEEEccCCCCcchhhhhHHHHH
Q 031654 67 RDLMACAQTGSRKTTPFCFPIING 90 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~ 90 (155)
.++++.||||||||.++++|-|-.
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~ 168 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLT 168 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHh
Confidence 689999999999999999996543
No 298
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.98 E-value=0.096 Score=43.07 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=19.5
Q ss_pred cCCcEEEEccCCCCcchhhhhHHHHHH
Q 031654 65 AGRDLMACAQTGSRKTTPFCFPIINGI 91 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yllp~l~~l 91 (155)
.+.-+++++|||||||... -.++..+
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 5678999999999998863 3344444
No 299
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.91 E-value=0.16 Score=42.34 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=14.7
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
..+++.||+|+|||...
T Consensus 37 ~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 37 SSMILWGPPGTGKTTLA 53 (413)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47999999999999754
No 300
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.87 E-value=0.23 Score=42.48 Aligned_cols=17 Identities=24% Similarity=0.098 Sum_probs=14.5
Q ss_pred cEEEEccCCCCcchhhh
Q 031654 68 DLMACAQTGSRKTTPFC 84 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yl 84 (155)
-++++||.|+|||.+..
T Consensus 42 a~Lf~GP~GtGKTTlAr 58 (484)
T PRK14956 42 AYIFFGPRGVGKTTIAR 58 (484)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999998754
No 301
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.87 E-value=0.046 Score=48.37 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=23.8
Q ss_pred HhcCCcEEEEccCCCCcchhhhhHHHHHHHHhh
Q 031654 63 LVAGRDLMACAQTGSRKTTPFCFPIINGIMREY 95 (155)
Q Consensus 63 ~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~ 95 (155)
+-.|+-+-+++|.|||||.+ ..++.+++...
T Consensus 491 i~pGe~vALVGPSGsGKSTi--asLL~rfY~Pt 521 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTI--ASLLLRFYDPT 521 (716)
T ss_pred eCCCCEEEEECCCCCCHHHH--HHHHHHhcCCC
Confidence 45688999999999999986 45666666543
No 302
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.85 E-value=0.17 Score=44.93 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=14.4
Q ss_pred cEEEEccCCCCcchhhh
Q 031654 68 DLMACAQTGSRKTTPFC 84 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yl 84 (155)
-++++||.|+|||....
T Consensus 39 AyLF~GPpGvGKTTlAr 55 (702)
T PRK14960 39 AYLFTGTRGVGKTTIAR 55 (702)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56999999999998654
No 303
>PF12846 AAA_10: AAA-like domain
Probab=92.70 E-value=0.1 Score=40.58 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=17.4
Q ss_pred CcEEEEccCCCCcchhhhhHHHH
Q 031654 67 RDLMACAQTGSRKTTPFCFPIIN 89 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~ 89 (155)
+++++.|+||||||.... .++.
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~ 23 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLE 23 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHH
Confidence 578999999999997755 4443
No 304
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=92.69 E-value=0.2 Score=40.91 Aligned_cols=40 Identities=23% Similarity=0.111 Sum_probs=27.8
Q ss_pred HHhHHhCCCCCCCHHHHHHHHHHh-cCCcEEEEccCCCCcchh
Q 031654 41 RNKPRTYKYVKPTPVQRHATSILV-AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 41 ~~~l~~~g~~~pt~iQ~~~i~~~l-~g~dvl~~a~TGsGKT~~ 82 (155)
++.|.+.|+ .++-+...+..+. .+.+++++++||||||..
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl 194 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL 194 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 444555564 4556666665544 558999999999999874
No 305
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.67 E-value=0.23 Score=43.62 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=42.5
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhh---h------ch--HHHHHHHhc--CCcEEEEChHH---------HHHHHH
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREY---Y------SA--RKELRELAR--WVDNLMATLRR---------LVNLLE 124 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~---~------~~--~~~~~~l~~--~~~IlI~TP~~---------l~~~l~ 124 (155)
+.+++++|.|+|||....+-+ ..+.... . .+ ....+.+.. .+|++...|.. +.+.+.
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~lA-k~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~ 125 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARILA-RALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVR 125 (598)
T ss_pred ceEEEECCCCCCHHHHHHHHH-HhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHH
Confidence 368999999999998754332 2222110 0 00 122233332 46777655432 222222
Q ss_pred cCCCCcccccceEEEEcccccccc
Q 031654 125 RGRVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 125 ~~~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
... ....- +.+||||+ |.|-.
T Consensus 126 ~~P-~~a~~-KVvIIDEa-d~Ls~ 146 (598)
T PRK09111 126 YRP-VSARY-KVYIIDEV-HMLST 146 (598)
T ss_pred hch-hcCCc-EEEEEECh-HhCCH
Confidence 222 24566 89999999 88754
No 306
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=92.65 E-value=0.42 Score=44.14 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=21.9
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHH
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMR 93 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~ 93 (155)
.|+.+..+||||||.+|+-.++.....
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~ 86 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK 86 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 489999999999999998777665443
No 307
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.63 E-value=0.27 Score=42.49 Aligned_cols=17 Identities=24% Similarity=0.120 Sum_probs=14.1
Q ss_pred cEEEEccCCCCcchhhh
Q 031654 68 DLMACAQTGSRKTTPFC 84 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yl 84 (155)
-++++||.|+|||....
T Consensus 40 a~Lf~Gp~G~GKTt~A~ 56 (527)
T PRK14969 40 AYLFTGTRGVGKTTLAR 56 (527)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36899999999997654
No 308
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.63 E-value=0.2 Score=44.95 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=15.3
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
.|+++.+|+|+|||...
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 69999999999999863
No 309
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=92.56 E-value=0.65 Score=37.96 Aligned_cols=47 Identities=13% Similarity=0.078 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhh
Q 031654 49 YVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREY 95 (155)
Q Consensus 49 ~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~ 95 (155)
+.--|+.|..=+..+.+.-=+++.+|-|+|||.-.....+..+....
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~ 172 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQ 172 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcc
Confidence 44568899888777777777889999999999877666666665443
No 310
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=92.56 E-value=0.55 Score=42.02 Aligned_cols=40 Identities=30% Similarity=0.297 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHH
Q 031654 50 VKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGI 91 (155)
Q Consensus 50 ~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l 91 (155)
..+++-|.+++.+ ...+++|.|+.|||||.+..--+...+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li 42 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLI 42 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4589999998864 346899999999999988655554444
No 311
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.55 E-value=0.061 Score=39.34 Aligned_cols=47 Identities=23% Similarity=0.231 Sum_probs=31.3
Q ss_pred HHHHHHhcCCcEEEEChHHHHHHHHcCC---CCcccccceEEEEccccccccc
Q 031654 100 KELRELARWVDNLMATLRRLVNLLERGR---VSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 100 ~~~~~l~~~~~IlI~TP~~l~~~l~~~~---~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
...+.....+||||++-..|.+-..... +++.+ ..|||||| |.|.+.
T Consensus 111 ~~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~--~ivI~DEA-HNL~~~ 160 (174)
T PF06733_consen 111 YLARELAKNADIVICNYNYLFDPSIRKSLFGIDLKD--NIVIFDEA-HNLEDA 160 (174)
T ss_dssp HHHHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCC--EEEEETTG-GGCGGG
T ss_pred HHHHHhcccCCEEEeCHHHHhhHHHHhhhccccccC--cEEEEecc-cchHHH
Confidence 3445666679999999888766544332 33443 48999999 988765
No 312
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.55 E-value=0.21 Score=42.66 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=29.0
Q ss_pred CCCcccccCC--HHHHHhHHhCC--CCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchh
Q 031654 28 SPAARFAYVP--QHLRNKPRTYK--YVKPTPVQRHATSILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 28 ~~~~~f~~l~--~~l~~~l~~~g--~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
.+-.+|+++. +.+.+.+.+.- +..|...+... .-..+.+++.+|+|||||+.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~l 104 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLL 104 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHH
Confidence 3446888887 44544443320 22222222110 11225799999999999985
No 313
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.55 E-value=0.11 Score=41.80 Aligned_cols=40 Identities=25% Similarity=0.314 Sum_probs=28.2
Q ss_pred CCCCCHHHHH-HHHHHhcCCcEEEEccCCCCcchhhhhHHHH
Q 031654 49 YVKPTPVQRH-ATSILVAGRDLMACAQTGSRKTTPFCFPIIN 89 (155)
Q Consensus 49 ~~~pt~iQ~~-~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~ 89 (155)
+..+++.|.. .|-.+-.+++++++++||||||.. +.+++.
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~ 165 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLD 165 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHH
Confidence 3455666655 455667789999999999999974 334433
No 314
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.52 E-value=0.54 Score=38.65 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCcchh
Q 031654 66 GRDLMACAQTGSRKTTP 82 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~ 82 (155)
+..+++.+|-|||||.-
T Consensus 49 snsviiigprgsgkT~l 65 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTIL 65 (408)
T ss_pred CCceEEEccCCCCceEe
Confidence 37899999999999964
No 315
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=92.49 E-value=0.11 Score=47.30 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=24.2
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhch
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSA 98 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~ 98 (155)
-++++.+.||||||.+----+++.+....+..
T Consensus 531 ~hllv~G~tgsGKSv~lnt~i~Sll~~~~P~e 562 (858)
T COG1674 531 GHLLIAGATGSGKSVALNTMILSLLYTHSPEE 562 (858)
T ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHhCChhH
Confidence 58999999999999987666666666554433
No 316
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=92.41 E-value=0.19 Score=39.99 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCcEEEEChHHHHHHHHcC--CCCcccccceEEEEccccccccc
Q 031654 99 RKELRELARWVDNLMATLRRLVNLLERG--RVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 99 ~~~~~~l~~~~~IlI~TP~~l~~~l~~~--~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
....+.....+||||++...|++-..++ ...+. - .+|||||| |.|.+.
T Consensus 202 Y~~~r~~~~~Adivi~ny~yll~~~~r~~~~~~l~-~-~~lIiDEA-HnL~d~ 251 (289)
T smart00489 202 YFASRKAIEFANVVVLPYQYLLDPKIRQALSIELK-D-SIVIFDEA-HNLDNV 251 (289)
T ss_pred hHHHHHHhhcCCEEEECHHHHhcHHHHHHhccccc-c-cEEEEeCc-cChHHH
Confidence 3444455577999999999887765332 23443 4 69999999 998764
No 317
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=92.41 E-value=0.19 Score=39.99 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCcEEEEChHHHHHHHHcC--CCCcccccceEEEEccccccccc
Q 031654 99 RKELRELARWVDNLMATLRRLVNLLERG--RVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 99 ~~~~~~l~~~~~IlI~TP~~l~~~l~~~--~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
....+.....+||||++...|++-..++ ...+. - .+|||||| |.|.+.
T Consensus 202 Y~~~r~~~~~Adivi~ny~yll~~~~r~~~~~~l~-~-~~lIiDEA-HnL~d~ 251 (289)
T smart00488 202 YFASRKAIEFANVVVLPYQYLLDPKIRQALSIELK-D-SIVIFDEA-HNLDNV 251 (289)
T ss_pred hHHHHHHhhcCCEEEECHHHHhcHHHHHHhccccc-c-cEEEEeCc-cChHHH
Confidence 3444455577999999999887765332 23443 4 69999999 998764
No 318
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.36 E-value=0.13 Score=46.88 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=15.2
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
.++++.+|+|+|||...
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 59999999999999864
No 319
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.35 E-value=0.14 Score=42.37 Aligned_cols=27 Identities=30% Similarity=0.226 Sum_probs=19.6
Q ss_pred cCCcEEEEccCCCCcchhhhhHHHHHHH
Q 031654 65 AGRDLMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
.+..+++++|||||||... -.++..+.
T Consensus 148 ~~GlilI~G~TGSGKTT~l-~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA-ASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 4457999999999999753 34555554
No 320
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.32 E-value=0.14 Score=41.08 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.0
Q ss_pred HHhcCCcEEEEccCCCCcchh
Q 031654 62 ILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 62 ~~l~g~dvl~~a~TGsGKT~~ 82 (155)
.+..|.+++++++||||||..
T Consensus 140 ~v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHH
Confidence 345779999999999999985
No 321
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.18 E-value=0.34 Score=42.71 Aligned_cols=19 Identities=21% Similarity=0.114 Sum_probs=15.5
Q ss_pred CcEEEEccCCCCcchhhhh
Q 031654 67 RDLMACAQTGSRKTTPFCF 85 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yll 85 (155)
..++.++|.|+|||.+..+
T Consensus 39 ha~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARI 57 (624)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3588999999999987643
No 322
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=0.27 Score=40.29 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=12.9
Q ss_pred CcEEEEccCCCCcch
Q 031654 67 RDLMACAQTGSRKTT 81 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~ 81 (155)
|=+++.+|+|+|||.
T Consensus 178 RliLlhGPPGTGKTS 192 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTS 192 (423)
T ss_pred eEEEEeCCCCCChhH
Confidence 457899999999985
No 323
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.10 E-value=1.1 Score=36.87 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=13.6
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
-+++.+|.|+|||...
T Consensus 47 a~L~~G~~G~GKttlA 62 (351)
T PRK09112 47 ALLFEGPEGIGKATLA 62 (351)
T ss_pred eEeeECCCCCCHHHHH
Confidence 5899999999998653
No 324
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.07 E-value=0.15 Score=46.45 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=15.2
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
.++++.+|+|+|||...
T Consensus 195 ~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CceEEEcCCCCCHHHHH
Confidence 69999999999999864
No 325
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=92.01 E-value=0.36 Score=36.02 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=18.2
Q ss_pred cCCcEEEEccCCCCcchhhhhHHHH
Q 031654 65 AGRDLMACAQTGSRKTTPFCFPIIN 89 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yllp~l~ 89 (155)
.|.=+.+.+++|||||...+--+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~ 35 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN 35 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999876443333
No 326
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=91.98 E-value=0.23 Score=45.18 Aligned_cols=82 Identities=15% Similarity=0.007 Sum_probs=41.5
Q ss_pred cEEEEccCCCCcchhhhhHHHHHHHHhhh---ch--HHHHHHHhc----CCcEEEECh------HHHHHHHHcCCC--Cc
Q 031654 68 DLMACAQTGSRKTTPFCFPIINGIMREYY---SA--RKELRELAR----WVDNLMATL------RRLVNLLERGRV--SL 130 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yllp~l~~l~~~~~---~~--~~~~~~l~~----~~~IlI~TP------~~l~~~l~~~~~--~l 130 (155)
-+|+++|.|+|||.+..+-.-..+..... .+ ....+.+.. ..|++.-.. +.+.++...-.+ ..
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~ 118 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAE 118 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhc
Confidence 36899999999998765433222211110 01 122233322 245544433 122222211111 23
Q ss_pred ccccceEEEEccccccccccc
Q 031654 131 QMIIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 131 ~~l~~~lVlDEa~D~ll~~gf 151 (155)
.+- +.+||||+ |+|-..++
T Consensus 119 ~~~-KV~IIDEa-d~lt~~a~ 137 (824)
T PRK07764 119 SRY-KIFIIDEA-HMVTPQGF 137 (824)
T ss_pred CCc-eEEEEech-hhcCHHHH
Confidence 466 89999999 98866544
No 327
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.97 E-value=0.08 Score=39.66 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=16.6
Q ss_pred EEEEccCCCCcchhhhhHHHHHHH
Q 031654 69 LMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 69 vl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
+++++|||||||... -.++..+.
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhh
Confidence 689999999999874 33444443
No 328
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.96 E-value=0.14 Score=39.04 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=16.8
Q ss_pred HHHHHH-hcCCcEEEEccCCCCcchhh
Q 031654 58 HATSIL-VAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 58 ~~i~~~-l~g~dvl~~a~TGsGKT~~y 83 (155)
+|+... ..++++++.+|+|||||+..
T Consensus 13 rAL~iAAaG~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 13 RALEIAAAGGHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp HHHHHHHHCC--EEEES-CCCTHHHHH
T ss_pred HHHHHHHcCCCCeEEECCCCCCHHHHH
Confidence 344433 35589999999999999864
No 329
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=91.77 E-value=0.29 Score=43.68 Aligned_cols=18 Identities=22% Similarity=0.139 Sum_probs=15.2
Q ss_pred CcEEEEccCCCCcchhhh
Q 031654 67 RDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yl 84 (155)
+.++++||.|+|||....
T Consensus 39 Ha~Lf~GP~GvGKTTlAr 56 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIAR 56 (709)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 468999999999998654
No 330
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=91.74 E-value=0.15 Score=43.29 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=18.9
Q ss_pred HHHHH-hcCCcEEEEccCCCCcchh
Q 031654 59 ATSIL-VAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 59 ~i~~~-l~g~dvl~~a~TGsGKT~~ 82 (155)
|+... ..|+|+++.+|+|||||+.
T Consensus 190 AleiAAAGgHnLl~~GpPGtGKTml 214 (490)
T COG0606 190 ALEIAAAGGHNLLLVGPPGTGKTML 214 (490)
T ss_pred HHHHHHhcCCcEEEecCCCCchHHh
Confidence 44433 4569999999999999986
No 331
>CHL00195 ycf46 Ycf46; Provisional
Probab=91.72 E-value=0.19 Score=43.10 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
+-+++.||+|||||+..
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 67999999999999753
No 332
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.70 E-value=0.7 Score=39.85 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=15.7
Q ss_pred CcEEEEccCCCCcchhhhh
Q 031654 67 RDLMACAQTGSRKTTPFCF 85 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yll 85 (155)
..++.+||.|+|||.+..+
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3689999999999987543
No 333
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.68 E-value=0.31 Score=44.27 Aligned_cols=74 Identities=9% Similarity=0.072 Sum_probs=40.2
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHH--------------HHHHcCCCCccc
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLV--------------NLLERGRVSLQM 132 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~--------------~~l~~~~~~l~~ 132 (155)
.++++.+|+|+|||...-. +...+... +......++.++....+.++ .++..- .-..
T Consensus 201 ~n~lL~G~pGvGKTal~~~-la~~i~~~------~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~--~~~~ 271 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEG-LAQRIVNR------DVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEI--QENN 271 (821)
T ss_pred CCeEEECCCCCCHHHHHHH-HHHHHHhC------CCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHH--HhcC
Confidence 6999999999999986422 11222111 01111234556655554433 222210 0012
Q ss_pred ccceEEEEccccccccccc
Q 031654 133 IIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 133 l~~~lVlDEa~D~ll~~gf 151 (155)
- ..|++||+ |.++..|.
T Consensus 272 ~-~ILfiDEi-h~l~~~g~ 288 (821)
T CHL00095 272 N-IILVIDEV-HTLIGAGA 288 (821)
T ss_pred C-eEEEEecH-HHHhcCCC
Confidence 2 37999999 99987653
No 334
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.68 E-value=0.12 Score=31.82 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|...++.+++|||||..+
T Consensus 22 ~g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567999999999999864
No 335
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.64 E-value=0.42 Score=41.58 Aligned_cols=17 Identities=24% Similarity=0.063 Sum_probs=14.1
Q ss_pred cEEEEccCCCCcchhhh
Q 031654 68 DLMACAQTGSRKTTPFC 84 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yl 84 (155)
-++++||.|+|||....
T Consensus 40 a~Lf~Gp~GvGKTTlAr 56 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGR 56 (546)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998653
No 336
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.62 E-value=0.32 Score=42.73 Aligned_cols=18 Identities=17% Similarity=0.076 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCcchhhh
Q 031654 67 RDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yl 84 (155)
+-++++||.|+|||....
T Consensus 39 hA~Lf~GP~GvGKTTlA~ 56 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAK 56 (605)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358899999999998654
No 337
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=91.61 E-value=0.096 Score=46.15 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.3
Q ss_pred CcEEEEccCCCCcchhhhhHHH
Q 031654 67 RDLMACAQTGSRKTTPFCFPII 88 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l 88 (155)
.++++.||||||||.++++|-+
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnL 233 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTA 233 (623)
T ss_pred ceEEEEeCCCCCccceeehhhh
Confidence 6899999999999999999953
No 338
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.56 E-value=0.47 Score=39.81 Aligned_cols=19 Identities=21% Similarity=0.115 Sum_probs=16.7
Q ss_pred hcCCcEEEEccCCCCcchh
Q 031654 64 VAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~ 82 (155)
-.|+-+++.+|+|+|||..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCCEEEEECCCCCChhHH
Confidence 4678899999999999974
No 339
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=91.53 E-value=0.49 Score=37.38 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=14.6
Q ss_pred CcEEEEccCCCCcchhhh
Q 031654 67 RDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yl 84 (155)
+-+++++++|+|||....
T Consensus 73 ~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIA 90 (272)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 457788999999998644
No 340
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=91.50 E-value=0.29 Score=43.97 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=14.8
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
.++++.||+|+|||...
T Consensus 53 ~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 53 GSLILYGPPGVGKTTLA 69 (725)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 48999999999999754
No 341
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=91.49 E-value=0.35 Score=43.67 Aligned_cols=17 Identities=24% Similarity=0.110 Sum_probs=13.9
Q ss_pred cEEEEccCCCCcchhhh
Q 031654 68 DLMACAQTGSRKTTPFC 84 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yl 84 (155)
-++++++.|+|||....
T Consensus 40 AyLFtGPpGvGKTTlAr 56 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSR 56 (830)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35899999999997643
No 342
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.46 E-value=0.15 Score=44.63 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=27.3
Q ss_pred cCCcEEEEChHHHHHHHHcC---CC---Ccccccc-eEEEEccccccc
Q 031654 107 RWVDNLMATLRRLVNLLERG---RV---SLQMIIR-YLALKEAADQTL 147 (155)
Q Consensus 107 ~~~~IlI~TP~~l~~~l~~~---~~---~l~~l~~-~lVlDEa~D~ll 147 (155)
.+..|..+|-..|...+.+. .+ ++.+. + .++-||| |+|=
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~-klvfl~dea-hhln 125 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQ-KLVFLADEA-HHLN 125 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhC-ceEEEechh-hhhh
Confidence 36789999999998777653 33 34444 3 4566999 8874
No 343
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=91.40 E-value=0.28 Score=39.88 Aligned_cols=77 Identities=18% Similarity=0.169 Sum_probs=39.2
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChH---HHHHHHHcCCCCc--ccccceEEEEc
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLR---RLVNLLERGRVSL--QMIIRYLALKE 141 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~---~l~~~l~~~~~~l--~~l~~~lVlDE 141 (155)
.+.+.-+|+|+|||-.-+ +....+... .........+....+-=++.+. .+....+...+.- ... +++|+||
T Consensus 63 Ph~L~YgPPGtGktsti~-a~a~~ly~~-~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~f-KlvILDE 139 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTIL-ANARDFYSP-HPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAF-KLVILDE 139 (360)
T ss_pred CcccccCCCCCCCCCchh-hhhhhhcCC-CCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCce-eEEEecc
Confidence 478888899999998743 333333331 1112233333322222222222 1222222212222 367 9999999
Q ss_pred cccccc
Q 031654 142 AADQTL 147 (155)
Q Consensus 142 a~D~ll 147 (155)
| |.|-
T Consensus 140 A-DaMT 144 (360)
T KOG0990|consen 140 A-DAMT 144 (360)
T ss_pred h-hHhh
Confidence 9 9885
No 344
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.40 E-value=0.21 Score=45.63 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=15.2
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
.++++.+|+|+|||...
T Consensus 209 ~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVV 225 (852)
T ss_pred CceeEECCCCCCHHHHH
Confidence 59999999999999864
No 345
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=91.31 E-value=0.19 Score=37.29 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=20.8
Q ss_pred HHHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 58 HATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 58 ~~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.++..++.|.| +++.++||||||.+-
T Consensus 14 ~~v~~~~~G~n~~i~~yG~tGsGKT~Tm 41 (186)
T cd01363 14 PLLQSALDGYNVCIFAYGQTGSGKTYTM 41 (186)
T ss_pred HHHHHHhCCcceeEEEECCCCCcceEec
Confidence 56677789965 678899999999663
No 346
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.29 E-value=0.49 Score=39.94 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=14.6
Q ss_pred CcEEEEccCCCCcchhhh
Q 031654 67 RDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yl 84 (155)
.-+++++|+|+|||....
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347889999999998754
No 347
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.29 E-value=0.5 Score=39.85 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=13.8
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
-+++++++|+|||...
T Consensus 101 vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 101 VILMVGLQGSGKTTTC 116 (428)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4788999999999874
No 348
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.29 E-value=0.26 Score=41.62 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCcchhhh
Q 031654 67 RDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yl 84 (155)
.-+++++++|+|||....
T Consensus 96 ~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 468899999999998753
No 349
>CHL00176 ftsH cell division protein; Validated
Probab=91.28 E-value=0.37 Score=42.66 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
+.+++.+|+|+|||+..
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999853
No 350
>PRK13764 ATPase; Provisional
Probab=91.26 E-value=0.19 Score=44.12 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=20.7
Q ss_pred hcCCcEEEEccCCCCcchhhhhHHHHHHH
Q 031654 64 VAGRDLMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
..+++++++++||||||.. +-.++..+.
T Consensus 255 ~~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred hcCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 3468899999999999974 344555554
No 351
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=91.24 E-value=0.15 Score=42.49 Aligned_cols=74 Identities=14% Similarity=0.038 Sum_probs=36.4
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHcCCC----CcccccceEEEEcc
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLERGRV----SLQMIIRYLALKEA 142 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~----~l~~l~~~lVlDEa 142 (155)
+=+++.+|+|+|||+..-.- ...+... ...-...++. .=.+|-|++++..+-+..- .-..- ..|.|||+
T Consensus 149 lgllL~GPPGcGKTllArai-A~elg~~--~i~vsa~eL~---sk~vGEsEk~IR~~F~~A~~~a~~~~aP-cVLFIDEI 221 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELV-FKKMGIE--PIVMSAGELE---SENAGEPGKLIRQRYREAADIIKKKGKM-SCLFINDL 221 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHH-HHHcCCC--eEEEEHHHhh---cCcCCcHHHHHHHHHHHHHHHhhccCCC-eEEEEehh
Confidence 35788999999999853211 1111000 0000001111 1134555555544433211 12245 68999999
Q ss_pred cccccc
Q 031654 143 ADQTLD 148 (155)
Q Consensus 143 ~D~ll~ 148 (155)
|.++-
T Consensus 222 -DA~~g 226 (413)
T PLN00020 222 -DAGAG 226 (413)
T ss_pred -hhcCC
Confidence 98773
No 352
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.23 E-value=0.53 Score=41.17 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=39.7
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhh-----ch--HHHHHHHhc--CCcEEEECh------HHHHHHHHc--CCCC
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYY-----SA--RKELRELAR--WVDNLMATL------RRLVNLLER--GRVS 129 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~-----~~--~~~~~~l~~--~~~IlI~TP------~~l~~~l~~--~~~~ 129 (155)
+.++++||.|+|||....+- ...+..... .+ ....+.+.. .++++--.+ +.+.+++.. ..-.
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~l-A~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~ 117 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARIL-AKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPA 117 (585)
T ss_pred eEEEEECCCCCCHHHHHHHH-HHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcc
Confidence 35689999999999875432 222221110 00 122233333 345543233 122222221 1112
Q ss_pred cccccceEEEEcccccccc
Q 031654 130 LQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 130 l~~l~~~lVlDEa~D~ll~ 148 (155)
...- +.+||||+ |.|-+
T Consensus 118 ~~~~-kVvIIDEa-~~L~~ 134 (585)
T PRK14950 118 LARY-KVYIIDEV-HMLST 134 (585)
T ss_pred cCCe-EEEEEeCh-HhCCH
Confidence 3566 89999999 88754
No 353
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.19 E-value=0.62 Score=35.42 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCCCCcchhh
Q 031654 64 VAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~y 83 (155)
..|.-+++.|++|+|||...
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~ 30 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFA 30 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHH
Confidence 45677899999999999643
No 354
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.12 E-value=0.25 Score=37.16 Aligned_cols=88 Identities=11% Similarity=-0.025 Sum_probs=48.2
Q ss_pred hcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------HHHHHHHhcCCcEEEEChHH-----------HHHH
Q 031654 64 VAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------RKELRELARWVDNLMATLRR-----------LVNL 122 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------~~~~~~l~~~~~IlI~TP~~-----------l~~~ 122 (155)
+....+++..++|.|||.+.+--++..+....... ......+..-+.|-+-..++ -...
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 45679999999999999987655555444333222 22333333211122211111 0011
Q ss_pred ----HHc--CCCCcccccceEEEEccccccccccccc
Q 031654 123 ----LER--GRVSLQMIIRYLALKEAADQTLDMALNQ 153 (155)
Q Consensus 123 ----l~~--~~~~l~~l~~~lVlDEa~D~ll~~gf~~ 153 (155)
+.. ..+.-... ++|||||+ -..++.|+.+
T Consensus 100 ~~~~~~~a~~~l~~~~y-dlvVLDEi-~~Al~~gli~ 134 (191)
T PRK05986 100 AREGWEEAKRMLADESY-DLVVLDEL-TYALKYGYLD 134 (191)
T ss_pred HHHHHHHHHHHHhCCCC-CEEEEehh-hHHHHCCCcc
Confidence 111 11223567 89999999 8888888754
No 355
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.10 E-value=0.52 Score=41.07 Aligned_cols=80 Identities=8% Similarity=0.043 Sum_probs=40.7
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHH-Hhhh---ch--HHHHHHHhc--CCcEEEEChH------HHHHHHHcCC--CCc
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIM-REYY---SA--RKELRELAR--WVDNLMATLR------RLVNLLERGR--VSL 130 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~-~~~~---~~--~~~~~~l~~--~~~IlI~TP~------~l~~~l~~~~--~~l 130 (155)
+-.+.+||.|+|||.+.-+-+ ..+. .... .+ ......+.. .+|++.-.+. .+.++...-. -..
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lA-kal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~ 117 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFA-KAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSE 117 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCccc
Confidence 347889999999998754322 1121 1100 00 122233322 4566554441 1222322211 123
Q ss_pred ccccceEEEEccccccccc
Q 031654 131 QMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 131 ~~l~~~lVlDEa~D~ll~~ 149 (155)
..- +.+||||+ |.|-..
T Consensus 118 ~~~-kViIIDE~-~~Lt~~ 134 (559)
T PRK05563 118 AKY-KVYIIDEV-HMLSTG 134 (559)
T ss_pred CCe-EEEEEECc-ccCCHH
Confidence 456 78999999 887543
No 356
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.10 E-value=0.5 Score=39.25 Aligned_cols=18 Identities=22% Similarity=0.146 Sum_probs=14.9
Q ss_pred cEEEEccCCCCcchhhhh
Q 031654 68 DLMACAQTGSRKTTPFCF 85 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yll 85 (155)
-++.++|.|+|||.+..+
T Consensus 40 a~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488999999999987543
No 357
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=91.10 E-value=0.29 Score=37.03 Aligned_cols=78 Identities=10% Similarity=-0.049 Sum_probs=43.5
Q ss_pred cEEEEccCCCCcchhhhhHHHHHHHHhhhch--------HHHHHHHh-----cCCcEEEEChHHHHHHHHcCCCCccccc
Q 031654 68 DLMACAQTGSRKTTPFCFPIINGIMREYYSA--------RKELRELA-----RWVDNLMATLRRLVNLLERGRVSLQMII 134 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--------~~~~~~l~-----~~~~IlI~TP~~l~~~l~~~~~~l~~l~ 134 (155)
=.++++|-.||||..-+--+-+......... .-....+. ..+-++|-.+..+.+.+....-++. +
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~~~~~i~~~i~~~~~~~~-~- 83 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIPSDTDIFDEIAALHEKPP-V- 83 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccccccccceeeeccCCcccceecCChHHHHHHHHhcccCCC-c-
Confidence 3578999999999954333222221111111 00111111 1345677777777777776543333 6
Q ss_pred ceEEEEccccccccc
Q 031654 135 RYLALKEAADQTLDM 149 (155)
Q Consensus 135 ~~lVlDEa~D~ll~~ 149 (155)
..+.+||| +.++.
T Consensus 84 ~~v~IDEa--QF~~~ 96 (201)
T COG1435 84 DCVLIDEA--QFFDE 96 (201)
T ss_pred CEEEEehh--HhCCH
Confidence 78999999 55543
No 358
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.06 E-value=0.18 Score=46.10 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=13.8
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
.++.++|||+|||...
T Consensus 598 ~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 598 VFLLVGPSGVGKTETA 613 (852)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3799999999999764
No 359
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=90.96 E-value=0.053 Score=41.66 Aligned_cols=73 Identities=11% Similarity=0.121 Sum_probs=40.8
Q ss_pred CcEEEEccCCCCcchhh-hhHHHHHHHHhhhch---HHHHHHHhc--CCcEEEE----ChHHHHHHHHcCCCCcccccce
Q 031654 67 RDLMACAQTGSRKTTPF-CFPIINGIMREYYSA---RKELRELAR--WVDNLMA----TLRRLVNLLERGRVSLQMIIRY 136 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y-llp~l~~l~~~~~~~---~~~~~~l~~--~~~IlI~----TP~~l~~~l~~~~~~l~~l~~~ 136 (155)
..+++++++|+|||... .+| ..... ..-...+.. ..+++=. +.+.+.+.+..-....... +.
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~y-dt 84 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKY-DN 84 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC-------CCCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccC-CE
Confidence 45899999999999864 222 10000 111122221 2333321 1245555555433446778 99
Q ss_pred EEEEcccccccc
Q 031654 137 LALKEAADQTLD 148 (155)
Q Consensus 137 lVlDEa~D~ll~ 148 (155)
||||.+ +.|-.
T Consensus 85 VVIDsI-~~l~~ 95 (220)
T TIGR01618 85 IVIDNI-SALQN 95 (220)
T ss_pred EEEecH-HHHHH
Confidence 999999 88755
No 360
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=90.95 E-value=0.29 Score=41.44 Aligned_cols=87 Identities=15% Similarity=0.257 Sum_probs=54.9
Q ss_pred HHHHHh-HHhCCCC--CCCHHHHH-----HHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCC
Q 031654 38 QHLRNK-PRTYKYV--KPTPVQRH-----ATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWV 109 (155)
Q Consensus 38 ~~l~~~-l~~~g~~--~pt~iQ~~-----~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~ 109 (155)
++.+.. |.++||+ ..+.-|+. .+|.+-..-|++=-||-|||||..| ..+...
T Consensus 172 eEWiD~LlrS~G~eP~~~~~r~Kl~~L~RLiPlVE~N~NliELgPrGTGKS~vy-------------------~eiSp~- 231 (457)
T PF13337_consen 172 EEWIDLLLRSIGYEPSGFSERQKLLLLARLIPLVERNYNLIELGPRGTGKSYVY-------------------KEISPY- 231 (457)
T ss_pred HHHHHHHHHhcCCCccccCHHHHHHHHHhHHHhcccccceEEEcCCCCCceeeh-------------------hhcCcc-
Confidence 444444 5788987 23444443 4577777889999999999999987 233332
Q ss_pred cEEE----EChHHHHHHHHcCCCC-cccccceEEEEcccccc
Q 031654 110 DNLM----ATLRRLVNLLERGRVS-LQMIIRYLALKEAADQT 146 (155)
Q Consensus 110 ~IlI----~TP~~l~~~l~~~~~~-l~~l~~~lVlDEa~D~l 146 (155)
-++| +|+.+|..-..++..- ...- +.|++||+ ..+
T Consensus 232 ~~liSGG~~T~A~LFyn~~~~~~GlV~~~-D~VafDEv-~~i 271 (457)
T PF13337_consen 232 GILISGGQVTVAKLFYNMSTGQIGLVGRW-DVVAFDEV-AGI 271 (457)
T ss_pred cEEEECCCcchHHheeeccCCcceeeeec-cEEEEEec-cCc
Confidence 3333 4666665555554332 2334 67999999 443
No 361
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.91 E-value=0.35 Score=43.61 Aligned_cols=18 Identities=17% Similarity=0.195 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
..++++.+|+|+|||...
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 469999999999999863
No 362
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=90.90 E-value=0.23 Score=45.00 Aligned_cols=77 Identities=17% Similarity=0.112 Sum_probs=41.2
Q ss_pred cCCcEEEEccCCCCcchhhhhHHHHHHHHhhhc-h----HHHHHHHhcCCc-EEEEChHHHHHHHHcCCCCcccccceEE
Q 031654 65 AGRDLMACAQTGSRKTTPFCFPIINGIMREYYS-A----RKELRELARWVD-NLMATLRRLVNLLERGRVSLQMIIRYLA 138 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~-~----~~~~~~l~~~~~-IlI~TP~~l~~~l~~~~~~l~~l~~~lV 138 (155)
.|..+++.+|+|+|||...- .+......... . ......+...-. .+=+.||++.+.+..... .- ..++
T Consensus 348 ~g~~i~l~GppG~GKTtl~~--~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~---~~-~vil 421 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQ--SIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGV---KN-PLFL 421 (784)
T ss_pred CCceEEEECCCCCCHHHHHH--HHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCC---CC-CEEE
Confidence 46679999999999996532 11211111100 0 111122221111 122468888877765321 22 4689
Q ss_pred EEcccccccc
Q 031654 139 LKEAADQTLD 148 (155)
Q Consensus 139 lDEa~D~ll~ 148 (155)
+||+ |++-.
T Consensus 422 lDEi-dk~~~ 430 (784)
T PRK10787 422 LDEI-DKMSS 430 (784)
T ss_pred EECh-hhccc
Confidence 9999 99864
No 363
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=90.88 E-value=0.21 Score=42.28 Aligned_cols=41 Identities=22% Similarity=0.142 Sum_probs=33.6
Q ss_pred CCcEEEEChHHHHHHHHc------CCCCcccccceEEEEcccccccccc
Q 031654 108 WVDNLMATLRRLVNLLER------GRVSLQMIIRYLALKEAADQTLDMA 150 (155)
Q Consensus 108 ~~~IlI~TP~~l~~~l~~------~~~~l~~l~~~lVlDEa~D~ll~~g 150 (155)
.+|||||+|-.|.-.+.. ..-.|+.+ +.+|+|.| |.|+-+.
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSI-Ev~iiD~a-d~l~MQN 177 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSI-EVLIIDQA-DVLLMQN 177 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhhee-eeEeechh-hHHHHhh
Confidence 589999999998887774 12348999 99999999 9988654
No 364
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=90.88 E-value=0.6 Score=40.50 Aligned_cols=71 Identities=23% Similarity=0.229 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHhcC-----CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHc
Q 031654 51 KPTPVQRHATSILVAG-----RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLER 125 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g-----~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~ 125 (155)
.|+.-|-.||..+..| +.-+.-+-||||||.+-.-- +..+ +.|-+|++-...|..-|-.
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnV---------------I~~~-~rPtLV~AhNKTLAaQLy~ 75 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANV---------------IAKV-QRPTLVLAHNKTLAAQLYS 75 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHH---------------HHHh-CCCeEEEecchhHHHHHHH
Confidence 5677788888777654 57788899999999874211 1222 4577777777666555543
Q ss_pred C---CCCcccccceEE
Q 031654 126 G---RVSLQMIIRYLA 138 (155)
Q Consensus 126 ~---~~~l~~l~~~lV 138 (155)
. .+.=+.| .|+|
T Consensus 76 Efk~fFP~NaV-EYFV 90 (663)
T COG0556 76 EFKEFFPENAV-EYFV 90 (663)
T ss_pred HHHHhCcCcce-EEEe
Confidence 2 2333455 6666
No 365
>PRK13531 regulatory ATPase RavA; Provisional
Probab=90.88 E-value=0.28 Score=42.01 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=30.7
Q ss_pred HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhh
Q 031654 38 QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 38 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~y 83 (155)
..+.+.|.+.=+.+-.-+ ..+.-.++.|.++++.+|+|+|||...
T Consensus 12 ~~l~~~l~~~i~gre~vI-~lll~aalag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 12 SRLSSALEKGLYERSHAI-RLCLLAALSGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHhhhccCcHHHH-HHHHHHHccCCCEEEECCCChhHHHHH
Confidence 345555655444443333 334456789999999999999999864
No 366
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=90.87 E-value=0.13 Score=45.43 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=20.3
Q ss_pred CcEEEEccCCCCcchhhhhHHH
Q 031654 67 RDLMACAQTGSRKTTPFCFPII 88 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l 88 (155)
.++++.||||||||.++++|-+
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnL 246 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTA 246 (641)
T ss_pred ceEEEEeCCCCCccceEehhhh
Confidence 6899999999999999999964
No 367
>PHA01747 putative ATP-dependent protease
Probab=90.81 E-value=0.39 Score=39.89 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=36.7
Q ss_pred cCCcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhc-CCcEEE---EChHHHHHHHHcCCCC-cccccceEEE
Q 031654 65 AGRDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELAR-WVDNLM---ATLRRLVNLLERGRVS-LQMIIRYLAL 139 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~-~~~IlI---~TP~~l~~~l~~~~~~-l~~l~~~lVl 139 (155)
..-|++=-+|.|||||..|.- +.. .+..+. +|+.+|..-...+.+- ...- +.|++
T Consensus 189 ~NyNliELgPRGTGKS~~f~e-------------------is~fsp~~iSGG~~TvA~LFyN~~t~~~GLVg~~-D~VaF 248 (425)
T PHA01747 189 RPVHIIELSNRGTGKTTTFVI-------------------LQELFNFRYYTEPPTYANLVYDAKTNALGLVFLS-NGLIF 248 (425)
T ss_pred CCeeEEEecCCCCChhhHHHH-------------------hhhcCCceeeCCCCchHHheEecCCCceeEEeec-cEEEE
Confidence 456888889999999998731 111 122222 3666665555544332 2233 56999
Q ss_pred Ecccccc
Q 031654 140 KEAADQT 146 (155)
Q Consensus 140 DEa~D~l 146 (155)
||+ +.+
T Consensus 249 DEV-a~i 254 (425)
T PHA01747 249 DEI-QTW 254 (425)
T ss_pred Ecc-ccc
Confidence 999 554
No 368
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.79 E-value=0.81 Score=39.23 Aligned_cols=19 Identities=32% Similarity=0.281 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCcchhhh
Q 031654 66 GRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yl 84 (155)
|+-+.+++|||+|||.+..
T Consensus 256 g~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTA 274 (484)
T ss_pred CcEEEEECCCCccHHHHHH
Confidence 4568899999999998854
No 369
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.78 E-value=0.19 Score=45.97 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=14.1
Q ss_pred EEEEccCCCCcchhhhh
Q 031654 69 LMACAQTGSRKTTPFCF 85 (155)
Q Consensus 69 vl~~a~TGsGKT~~yll 85 (155)
++++||.|+|||....+
T Consensus 41 yLFtGPpGtGKTTLARi 57 (944)
T PRK14949 41 YLFTGTRGVGKTSLARL 57 (944)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58999999999987543
No 370
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.75 E-value=0.15 Score=41.57 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=19.0
Q ss_pred cCCcEEEEccCCCCcchhhhhHHHHHH
Q 031654 65 AGRDLMACAQTGSRKTTPFCFPIINGI 91 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yllp~l~~l 91 (155)
.+..+++++|||||||... -.++..+
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i 146 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYI 146 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhh
Confidence 4678999999999999864 2334434
No 371
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.72 E-value=0.61 Score=41.49 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=41.1
Q ss_pred cEEEEccCCCCcchhhhhHHHHHHHHhh----h-------chHHHHHHHhc--CCcEEEEChH------HHHHHHHcCCC
Q 031654 68 DLMACAQTGSRKTTPFCFPIINGIMREY----Y-------SARKELRELAR--WVDNLMATLR------RLVNLLERGRV 128 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yllp~l~~l~~~~----~-------~~~~~~~~l~~--~~~IlI~TP~------~l~~~l~~~~~ 128 (155)
-++++++.|+|||....+- ...+.... . ........+.. .+|++--.+. .+.+++..-..
T Consensus 40 A~LFtGP~GvGKTTLAriL-AkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~ 118 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRIL-AKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVY 118 (700)
T ss_pred EEEEECCCCCCHHHHHHHH-HHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHh
Confidence 4699999999999765432 22222110 0 00122222222 3466654442 23333332111
Q ss_pred --CcccccceEEEEcccccccccc
Q 031654 129 --SLQMIIRYLALKEAADQTLDMA 150 (155)
Q Consensus 129 --~l~~l~~~lVlDEa~D~ll~~g 150 (155)
...+- +.+||||+ |+|-...
T Consensus 119 ~P~~gr~-KViIIDEa-h~Ls~~A 140 (700)
T PRK12323 119 APTAGRF-KVYMIDEV-HMLTNHA 140 (700)
T ss_pred chhcCCc-eEEEEECh-HhcCHHH
Confidence 23456 89999999 8875443
No 372
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=90.71 E-value=0.13 Score=34.76 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=12.5
Q ss_pred EEEEccCCCCcchh
Q 031654 69 LMACAQTGSRKTTP 82 (155)
Q Consensus 69 vl~~a~TGsGKT~~ 82 (155)
+++.|++|||||..
T Consensus 2 I~I~G~~gsGKST~ 15 (121)
T PF13207_consen 2 IIISGPPGSGKSTL 15 (121)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999985
No 373
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=90.56 E-value=0.13 Score=35.72 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=13.9
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
+|++.+|+|+|||...
T Consensus 1 ~vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5899999999999853
No 374
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.50 E-value=0.61 Score=41.19 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=40.2
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhh--------hchHHHHHHHhc--CCcEEEEChH------HHHHHHHcCCC--
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREY--------YSARKELRELAR--WVDNLMATLR------RLVNLLERGRV-- 128 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~--------~~~~~~~~~l~~--~~~IlI~TP~------~l~~~l~~~~~-- 128 (155)
..++++||.|+|||.....- ...+.... .......+.+.. .+|++...+. .+.+++..-..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~l-Ak~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p 117 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARIL-AKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAP 117 (620)
T ss_pred ceEEEECCCCCChHHHHHHH-HHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhCh
Confidence 46799999999999865332 22222110 000222233332 2445433332 23333322111
Q ss_pred CcccccceEEEEcccccccc
Q 031654 129 SLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 129 ~l~~l~~~lVlDEa~D~ll~ 148 (155)
....- +.+||||| |.|=.
T Consensus 118 ~~~~~-KViIIDEa-d~Lt~ 135 (620)
T PRK14948 118 VQARW-KVYVIDEC-HMLST 135 (620)
T ss_pred hcCCc-eEEEEECc-cccCH
Confidence 13556 88999999 98743
No 375
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=90.41 E-value=0.14 Score=35.54 Aligned_cols=14 Identities=36% Similarity=0.684 Sum_probs=12.5
Q ss_pred EEEEccCCCCcchh
Q 031654 69 LMACAQTGSRKTTP 82 (155)
Q Consensus 69 vl~~a~TGsGKT~~ 82 (155)
++++|++|||||..
T Consensus 2 ii~~G~pgsGKSt~ 15 (143)
T PF13671_consen 2 IILCGPPGSGKSTL 15 (143)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999975
No 376
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.39 E-value=0.68 Score=39.66 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=13.7
Q ss_pred EEEEccCCCCcchhhhh
Q 031654 69 LMACAQTGSRKTTPFCF 85 (155)
Q Consensus 69 vl~~a~TGsGKT~~yll 85 (155)
.+++||.|+|||.+..+
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999876543
No 377
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.38 E-value=0.43 Score=42.09 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=40.7
Q ss_pred EEEEccCCCCcchhhhhHHHHHHHHhh-----------hchHHHHHHHhc--CCcEEEEChH------HHHHHHHcC--C
Q 031654 69 LMACAQTGSRKTTPFCFPIINGIMREY-----------YSARKELRELAR--WVDNLMATLR------RLVNLLERG--R 127 (155)
Q Consensus 69 vl~~a~TGsGKT~~yllp~l~~l~~~~-----------~~~~~~~~~l~~--~~~IlI~TP~------~l~~~l~~~--~ 127 (155)
++++||.|+|||....+- ...+.... .......+.+.. .+|++.-.+. .+.+++..- .
T Consensus 41 ~Lf~Gp~GvGKTtlAr~l-Ak~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~ 119 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRIL-AKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYK 119 (618)
T ss_pred EEEECCCCCCHHHHHHHH-HHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhC
Confidence 589999999999876442 22222110 000122222222 3455544332 223333221 1
Q ss_pred CCcccccceEEEEccccccccccc
Q 031654 128 VSLQMIIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 128 ~~l~~l~~~lVlDEa~D~ll~~gf 151 (155)
-...+. +.+||||+ |.|-...|
T Consensus 120 p~~g~~-KV~IIDEv-h~Ls~~a~ 141 (618)
T PRK14951 120 PVQGRF-KVFMIDEV-HMLTNTAF 141 (618)
T ss_pred cccCCc-eEEEEECh-hhCCHHHH
Confidence 123457 89999999 88765444
No 378
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.36 E-value=0.23 Score=43.09 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=43.7
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHcC--------C--CCcccccce
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLERG--------R--VSLQMIIRY 136 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~~--------~--~~l~~l~~~ 136 (155)
..+++.+|.|||||.-.+ ++..-..=|-|=|++|+.+.-+-+.. . ---+.+ ..
T Consensus 539 vSvLl~Gp~~sGKTaLAA----------------~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~l-si 601 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAA----------------KIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPL-SI 601 (744)
T ss_pred eEEEEecCCCCChHHHHH----------------HHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcc-eE
Confidence 479999999999997432 22222334667788887764332221 1 113566 88
Q ss_pred EEEEcccccccccc
Q 031654 137 LALKEAADQTLDMA 150 (155)
Q Consensus 137 lVlDEa~D~ll~~g 150 (155)
+|+|+. .+|+|+.
T Consensus 602 ivvDdi-ErLiD~v 614 (744)
T KOG0741|consen 602 IVVDDI-ERLLDYV 614 (744)
T ss_pred EEEcch-hhhhccc
Confidence 999999 9999974
No 379
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=90.27 E-value=0.15 Score=44.05 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=16.8
Q ss_pred HhcCCcEEEEccCCCCcchh
Q 031654 63 LVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 63 ~l~g~dvl~~a~TGsGKT~~ 82 (155)
+..|.-+-+++|||||||..
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl 371 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTL 371 (567)
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 56788888999999999764
No 380
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=90.17 E-value=0.12 Score=42.65 Aligned_cols=52 Identities=17% Similarity=0.080 Sum_probs=30.3
Q ss_pred CCcccccCCHHHHHhHHhCCCCCCCHHHHHHHH---HHhcC----CcEEEEccCCCCcchh
Q 031654 29 PAARFAYVPQHLRNKPRTYKYVKPTPVQRHATS---ILVAG----RDLMACAQTGSRKTTP 82 (155)
Q Consensus 29 ~~~~f~~l~~~l~~~l~~~g~~~pt~iQ~~~i~---~~l~g----~dvl~~a~TGsGKT~~ 82 (155)
.+.+|.++.+.++..|.+ .++-.-+|..-+| .++.| .=.+..+|||||||.-
T Consensus 231 ~i~sf~~mRe~ilseL~N--~e~v~G~~WkRFpvLNk~LkGhR~GElTvlTGpTGsGKTTF 289 (514)
T KOG2373|consen 231 GIRSFTDMREGILSELLN--TERVVGFQWKRFPVLNKYLKGHRPGELTVLTGPTGSGKTTF 289 (514)
T ss_pred hhhhHHHHHHHHHHHHhh--hhhhhceeehhhhHHHHHhccCCCCceEEEecCCCCCceeE
Confidence 355666666555544432 2222333444444 33444 5689999999999975
No 381
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.16 E-value=0.54 Score=41.64 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=14.0
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
=+++.+|+|+|||...
T Consensus 112 illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 112 ILLITGPSGCGKSTTI 127 (637)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3899999999999864
No 382
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.16 E-value=0.39 Score=38.57 Aligned_cols=60 Identities=20% Similarity=0.181 Sum_probs=37.1
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCC----cEEEEChHHHHHHHHcCCCCcccccceEEEEcc
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWV----DNLMATLRRLVNLLERGRVSLQMIIRYLALKEA 142 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~----~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa 142 (155)
-+++..+|+|.|||.-.. +.. .++..++ -=++--|+-|..++. ++..= +.|-+||.
T Consensus 53 DHvLl~GPPGlGKTTLA~------IIA---------~Emgvn~k~tsGp~leK~gDlaaiLt----~Le~~-DVLFIDEI 112 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAH------IIA---------NELGVNLKITSGPALEKPGDLAAILT----NLEEG-DVLFIDEI 112 (332)
T ss_pred CeEEeeCCCCCcHHHHHH------HHH---------HHhcCCeEecccccccChhhHHHHHh----cCCcC-CeEEEehh
Confidence 379999999999997432 222 1221111 113445777777776 34444 66889999
Q ss_pred ccccc
Q 031654 143 ADQTL 147 (155)
Q Consensus 143 ~D~ll 147 (155)
|+|-
T Consensus 113 -Hrl~ 116 (332)
T COG2255 113 -HRLS 116 (332)
T ss_pred -hhcC
Confidence 8863
No 383
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.11 E-value=0.16 Score=34.49 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=12.6
Q ss_pred EEEEccCCCCcchh
Q 031654 69 LMACAQTGSRKTTP 82 (155)
Q Consensus 69 vl~~a~TGsGKT~~ 82 (155)
+++.||+|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 68899999999985
No 384
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=90.07 E-value=0.42 Score=35.93 Aligned_cols=20 Identities=20% Similarity=0.101 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCcchhhhh
Q 031654 66 GRDLMACAQTGSRKTTPFCF 85 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yll 85 (155)
|.=+++.+++|||||...+-
T Consensus 19 g~i~~i~G~~GsGKT~l~~~ 38 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQ 38 (218)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35588999999999986443
No 385
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.03 E-value=0.37 Score=41.10 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
+..+.|++.+|+|||.+-
T Consensus 175 ~gSlYVsG~PGtgkt~~l 192 (529)
T KOG2227|consen 175 SGSLYVSGQPGTGKTALL 192 (529)
T ss_pred CcceEeeCCCCcchHHHH
Confidence 468999999999999873
No 386
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=90.02 E-value=0.25 Score=40.88 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=21.6
Q ss_pred HHhcCCcEEEEccCCCCcchhhhhHHHHHHHHh
Q 031654 62 ILVAGRDLMACAQTGSRKTTPFCFPIINGIMRE 94 (155)
Q Consensus 62 ~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~ 94 (155)
.-...+++++.+.||||||. ++-+++..+...
T Consensus 11 ~~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~ 42 (386)
T PF10412_consen 11 KDSENRHILIIGATGSGKTQ-AIRHLLDQIRAR 42 (386)
T ss_dssp GGGGGG-EEEEE-TTSSHHH-HHHHHHHHHHHT
T ss_pred cchhhCcEEEECCCCCCHHH-HHHHHHHHHHHc
Confidence 33456899999999999997 445666666544
No 387
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=89.97 E-value=1.1 Score=40.36 Aligned_cols=78 Identities=10% Similarity=0.101 Sum_probs=38.5
Q ss_pred cEEEEccCCCCcchhhhhHHHHHHHH-hhh----chHHHHHHHhcCCcEEEECh------HHHHHHHHcC-CC-Cccccc
Q 031654 68 DLMACAQTGSRKTTPFCFPIINGIMR-EYY----SARKELRELARWVDNLMATL------RRLVNLLERG-RV-SLQMII 134 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yllp~l~~l~~-~~~----~~~~~~~~l~~~~~IlI~TP------~~l~~~l~~~-~~-~l~~l~ 134 (155)
-.+.+||.|+|||.+..+-+ ..+.. ... .+..-.......++++-.-+ +.+.+++..- .. ....-
T Consensus 42 AYLF~GP~GtGKTt~AriLA-k~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~- 119 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIFA-NALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKY- 119 (725)
T ss_pred EEEEECCCCCcHHHHHHHHH-HHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCC-
Confidence 36899999999998764322 22211 110 11111111233566664332 2222332211 11 23456
Q ss_pred ceEEEEcccccccc
Q 031654 135 RYLALKEAADQTLD 148 (155)
Q Consensus 135 ~~lVlDEa~D~ll~ 148 (155)
+.+||||| |.|-.
T Consensus 120 KV~IIDEa-~~LT~ 132 (725)
T PRK07133 120 KIYIIDEV-HMLSK 132 (725)
T ss_pred EEEEEECh-hhCCH
Confidence 78999999 87743
No 388
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.92 E-value=0.11 Score=42.51 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=14.3
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
+.++++||+|+|||...
T Consensus 40 ~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 40 QALLFCGPRGVGKTTCA 56 (367)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47889999999999654
No 389
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=89.92 E-value=0.48 Score=35.67 Aligned_cols=20 Identities=30% Similarity=0.150 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCcchhhhh
Q 031654 66 GRDLMACAQTGSRKTTPFCF 85 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yll 85 (155)
|.=+.+.+++|+|||...+-
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ 38 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQ 38 (226)
T ss_pred CcEEEEeCCCCCChhHHHHH
Confidence 45688899999999986543
No 390
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=89.90 E-value=0.16 Score=38.13 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=13.2
Q ss_pred EEEEccCCCCcchhh
Q 031654 69 LMACAQTGSRKTTPF 83 (155)
Q Consensus 69 vl~~a~TGsGKT~~y 83 (155)
+++++|||+|||.+-
T Consensus 4 i~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 4 IALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCchHhHH
Confidence 678999999999874
No 391
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=89.85 E-value=0.77 Score=37.06 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=26.0
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhc--h-HHHHHHHhcCCcEEEECh
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYS--A-RKELRELARWVDNLMATL 116 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~--~-~~~~~~l~~~~~IlI~TP 116 (155)
.-.+++||.|+||+... ..+...+...... + .... .-.+.||+.+..|
T Consensus 27 ha~Lf~G~~G~Gk~~~A-~~~a~~llc~~~c~~c~~~~~-~~~~hPDl~~i~p 77 (314)
T PRK07399 27 PAYLFAGPEGVGRKLAA-LCFIEGLLSQGSPSKNIRRRL-EEGNHPDLLWVEP 77 (314)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHcCCCCCCCcHhccc-ccCCCCCEEEEec
Confidence 47899999999998643 2333333322211 1 1111 1123577777666
No 392
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=89.80 E-value=0.8 Score=39.74 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=39.9
Q ss_pred EEEEccCCCCcchhhhhHHHHHHHHh-hhc---h--HHHHHHHhc--CCcEEEECh------HHHHHHHHcCC--CCccc
Q 031654 69 LMACAQTGSRKTTPFCFPIINGIMRE-YYS---A--RKELRELAR--WVDNLMATL------RRLVNLLERGR--VSLQM 132 (155)
Q Consensus 69 vl~~a~TGsGKT~~yllp~l~~l~~~-~~~---~--~~~~~~l~~--~~~IlI~TP------~~l~~~l~~~~--~~l~~ 132 (155)
.+++||.|+|||.+... +...+... ... + ......+.. .++++-... ..+.+.+.... -....
T Consensus 39 yLf~Gp~G~GKTt~Ar~-LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~ 117 (535)
T PRK08451 39 YLFSGLRGSGKTSSARI-FARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMAR 117 (535)
T ss_pred EEEECCCCCcHHHHHHH-HHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCC
Confidence 48999999999986543 22222211 110 0 111222222 344544332 23444443211 12356
Q ss_pred ccceEEEEccccccccc
Q 031654 133 IIRYLALKEAADQTLDM 149 (155)
Q Consensus 133 l~~~lVlDEa~D~ll~~ 149 (155)
- +.+||||| |.|-..
T Consensus 118 ~-KVvIIDEa-d~Lt~~ 132 (535)
T PRK08451 118 F-KIFIIDEV-HMLTKE 132 (535)
T ss_pred e-EEEEEECc-ccCCHH
Confidence 7 89999999 888653
No 393
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=89.75 E-value=0.18 Score=34.07 Aligned_cols=14 Identities=36% Similarity=0.256 Sum_probs=12.6
Q ss_pred EEEEccCCCCcchh
Q 031654 69 LMACAQTGSRKTTP 82 (155)
Q Consensus 69 vl~~a~TGsGKT~~ 82 (155)
|++.|++|||||..
T Consensus 1 I~i~G~~GsGKtTi 14 (129)
T PF13238_consen 1 IGISGIPGSGKTTI 14 (129)
T ss_dssp EEEEESTTSSHHHH
T ss_pred CEEECCCCCCHHHH
Confidence 67899999999986
No 394
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.75 E-value=0.71 Score=41.58 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=36.9
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhch------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEE
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSA------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALK 140 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlD 140 (155)
+-+++++|+|||||+..- ........ ..+.-++. +-++ +.|+.+++....-+... .+-+|
T Consensus 345 kGvLL~GPPGTGKTLLAK------AiAGEAgVPF~svSGSEFvE~~----~g~~-asrvr~lf~~ar~~aP~---iifid 410 (774)
T KOG0731|consen 345 KGVLLVGPPGTGKTLLAK------AIAGEAGVPFFSVSGSEFVEMF----VGVG-ASRVRDLFPLARKNAPS---IIFID 410 (774)
T ss_pred CceEEECCCCCcHHHHHH------HHhcccCCceeeechHHHHHHh----cccc-hHHHHHHHHHhhccCCe---EEEec
Confidence 689999999999998531 22221111 22222221 1222 67777777665433333 46789
Q ss_pred cccccc
Q 031654 141 EAADQT 146 (155)
Q Consensus 141 Ea~D~l 146 (155)
|. |.+
T Consensus 411 ei-da~ 415 (774)
T KOG0731|consen 411 EI-DAV 415 (774)
T ss_pred cc-ccc
Confidence 98 865
No 395
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.74 E-value=0.15 Score=46.33 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=13.2
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
.++.++|||+|||...
T Consensus 541 ~~lf~Gp~GvGKt~lA 556 (821)
T CHL00095 541 SFLFSGPTGVGKTELT 556 (821)
T ss_pred EEEEECCCCCcHHHHH
Confidence 3789999999999643
No 396
>PHA00012 I assembly protein
Probab=89.73 E-value=0.76 Score=37.61 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=18.8
Q ss_pred EEEEccCCCCcchhhhhHHHHHHHHh
Q 031654 69 LMACAQTGSRKTTPFCFPIINGIMRE 94 (155)
Q Consensus 69 vl~~a~TGsGKT~~yllp~l~~l~~~ 94 (155)
-++.+..|||||+..+.-++..+.+.
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 47889999999998766555544443
No 397
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.67 E-value=1.2 Score=37.46 Aligned_cols=19 Identities=32% Similarity=0.242 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCcchhhh
Q 031654 66 GRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yl 84 (155)
|.-+.+++|||+|||....
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999998764
No 398
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=89.61 E-value=0.31 Score=39.73 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..++.|.| +++.++||||||.+.
T Consensus 80 ~v~~~l~G~n~ti~aYGqtGSGKTyTm 106 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNSGKTYTM 106 (345)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCeEEe
Confidence 3456678865 778899999999874
No 399
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=89.56 E-value=1.3 Score=36.57 Aligned_cols=16 Identities=19% Similarity=0.102 Sum_probs=13.6
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
-+++.+|.|+||+...
T Consensus 43 A~Lf~Gp~G~GK~~lA 58 (365)
T PRK07471 43 AWLIGGPQGIGKATLA 58 (365)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999998653
No 400
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.49 E-value=0.68 Score=40.60 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=14.4
Q ss_pred EEEEccCCCCcchhhhh
Q 031654 69 LMACAQTGSRKTTPFCF 85 (155)
Q Consensus 69 vl~~a~TGsGKT~~yll 85 (155)
++++||.|+|||.+..+
T Consensus 38 ~Lf~Gp~G~GKTt~A~~ 54 (584)
T PRK14952 38 YLFSGPRGCGKTSSARI 54 (584)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58999999999987644
No 401
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=89.38 E-value=0.37 Score=39.18 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=19.8
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..++.|.| +++.++||||||.+.
T Consensus 79 lv~~~~~G~n~~i~ayGqtGSGKTyTm 105 (338)
T cd01370 79 LVDGVLNGYNATVFAYGATGAGKTHTM 105 (338)
T ss_pred HHHHHHCCCCceEEeeCCCCCCCeEEE
Confidence 4456678865 788899999999885
No 402
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=89.35 E-value=0.16 Score=42.96 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.++.+++.+|+|||||+..
T Consensus 216 ~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4478999999999999864
No 403
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=89.25 E-value=0.42 Score=36.14 Aligned_cols=23 Identities=22% Similarity=0.088 Sum_probs=17.0
Q ss_pred CCcEEEEccCCCCcchhhhhHHH
Q 031654 66 GRDLMACAQTGSRKTTPFCFPII 88 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yllp~l 88 (155)
|.-+.+.+++|+|||...+--+.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~ 45 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAV 45 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999876543333
No 404
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=89.24 E-value=0.91 Score=40.37 Aligned_cols=33 Identities=33% Similarity=0.356 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHhcC-----CcEEEEccCCCCcchhh
Q 031654 51 KPTPVQRHATSILVAG-----RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g-----~dvl~~a~TGsGKT~~y 83 (155)
.|+..|..+|..+.+| +..++.+-||||||+..
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~ 46 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTM 46 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHH
Confidence 6889999999887554 36678999999999874
No 405
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=89.23 E-value=0.42 Score=36.89 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHh----cC-CcEEEEccCCCCcchhh
Q 031654 51 KPTPVQRHATSILV----AG-RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l----~g-~dvl~~a~TGsGKT~~y 83 (155)
.+++.+.+++..+. .+ ..+++.|++|+|||...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 45666666666553 23 36889999999999764
No 406
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=89.22 E-value=0.65 Score=41.22 Aligned_cols=16 Identities=25% Similarity=0.140 Sum_probs=13.7
Q ss_pred EEEEccCCCCcchhhh
Q 031654 69 LMACAQTGSRKTTPFC 84 (155)
Q Consensus 69 vl~~a~TGsGKT~~yl 84 (155)
+++.||.|+|||....
T Consensus 41 yLf~Gp~GvGKTTlAr 56 (647)
T PRK07994 41 YLFSGTRGVGKTTIAR 56 (647)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999998653
No 407
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=89.19 E-value=0.64 Score=33.93 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=17.7
Q ss_pred CcccccceEEEEccccccccccccc
Q 031654 129 SLQMIIRYLALKEAADQTLDMALNQ 153 (155)
Q Consensus 129 ~l~~l~~~lVlDEa~D~ll~~gf~~ 153 (155)
..... ++|||||+ -..++.|+.+
T Consensus 92 ~~~~~-dLlVLDEi-~~a~~~gli~ 114 (159)
T cd00561 92 ASGEY-DLVILDEI-NYALGYGLLD 114 (159)
T ss_pred hcCCC-CEEEEech-HhHhhCCCCC
Confidence 34577 89999999 7777877643
No 408
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=89.18 E-value=0.33 Score=39.16 Aligned_cols=26 Identities=31% Similarity=0.265 Sum_probs=19.9
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPFC 84 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~yl 84 (155)
.+..++.|.| +++.++||||||.+-.
T Consensus 76 lv~~~~~G~n~~i~ayGqtGSGKTyTm~ 103 (322)
T cd01367 76 LIPHVFEGGVATCFAYGQTGSGKTYTML 103 (322)
T ss_pred HHHHHhCCCceEEEeccCCCCCCceEec
Confidence 4456678865 7778999999998753
No 409
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=89.10 E-value=0.36 Score=39.50 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=19.5
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..++.|.| +++.++||||||.+-
T Consensus 80 ~v~~~l~G~n~~i~ayGqtGSGKT~Tm 106 (356)
T cd01365 80 LLDHAFEGYNVCLFAYGQTGSGKSYTM 106 (356)
T ss_pred HHHHHhCCCceEEEEecCCCCCCeEEe
Confidence 3456688865 788899999999864
No 410
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=89.07 E-value=0.35 Score=39.27 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=19.3
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..++.|.| +++.++||||||.+-
T Consensus 66 ~v~~~~~G~n~ti~aYGqTGSGKTyTm 92 (337)
T cd01373 66 LVEDCLSGYNGSIFAYGQTGSGKTYTM 92 (337)
T ss_pred HHHHHhCCCceeEEEeCCCCCCceEEe
Confidence 3456688965 778899999999653
No 411
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=89.05 E-value=0.48 Score=43.08 Aligned_cols=44 Identities=20% Similarity=0.127 Sum_probs=38.3
Q ss_pred HHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccc
Q 031654 104 ELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 104 ~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
.+.....|+++||.-|..-+-.+.++++.+ ..+|+||| |++...
T Consensus 3 ~ly~~ggi~~~T~rIl~~DlL~~ri~~~~i-tgiiv~~A-hr~~~~ 46 (814)
T TIGR00596 3 KVYLEGGIFSITSRILVVDLLTGIIPPELI-TGILVLRA-DRIIES 46 (814)
T ss_pred hHhhcCCEEEEechhhHhHHhcCCCCHHHc-cEEEEeec-cccccc
Confidence 344566899999999998888999999999 99999999 998754
No 412
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=88.90 E-value=0.21 Score=37.25 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCCcchhhhh
Q 031654 66 GRDLMACAQTGSRKTTPFCF 85 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yll 85 (155)
...++++||.|||||.-|..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~ 22 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQ 22 (181)
T ss_dssp --EEEEE-STTSSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 46799999999999997753
No 413
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=88.84 E-value=0.26 Score=41.10 Aligned_cols=31 Identities=23% Similarity=0.167 Sum_probs=22.1
Q ss_pred HHHHhcCCcEEEEccCCCCcchhhhhHHHHHH
Q 031654 60 TSILVAGRDLMACAQTGSRKTTPFCFPIINGI 91 (155)
Q Consensus 60 i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l 91 (155)
+|.-...+++++.|+||||||.. +..++..+
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~ 66 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASI 66 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHH
Confidence 45555668999999999999975 33344443
No 414
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=88.68 E-value=0.39 Score=38.66 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=19.4
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTP 82 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~ 82 (155)
.+..++.|.| +++.++||||||..
T Consensus 68 ~v~~~~~G~n~~i~ayG~tgSGKT~T 93 (325)
T cd01369 68 IVDDVLNGYNGTIFAYGQTGSGKTYT 93 (325)
T ss_pred HHHHHHcCccceEEEeCCCCCCceEE
Confidence 4556688865 68889999999987
No 415
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=88.65 E-value=0.2 Score=36.06 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCCcchhhhhHHHHHHHH
Q 031654 66 GRDLMACAQTGSRKTTPFCFPIINGIMR 93 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yllp~l~~l~~ 93 (155)
++.+++.|++|+|||..- --++.++..
T Consensus 24 ~~~~ll~G~~G~GKT~ll-~~~~~~~~~ 50 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLL-RALLDRLAE 50 (185)
T ss_dssp ---EEE-B-TTSSHHHHH-HHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHHh
Confidence 378999999999999752 224444443
No 416
>PRK14530 adenylate kinase; Provisional
Probab=88.61 E-value=0.24 Score=37.39 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.+..+++.+++|||||..
T Consensus 2 ~~~~I~i~G~pGsGKsT~ 19 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQ 19 (215)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567899999999999965
No 417
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=88.58 E-value=0.47 Score=38.20 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=20.0
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.++.++.|.| +++.++||||||.+.
T Consensus 72 lv~~~~~G~n~~i~ayG~tgSGKTyTm 98 (319)
T cd01376 72 IVPHLLSGQNATVFAYGSTGAGKTHTM 98 (319)
T ss_pred HHHHHhCCCceEEEEECCCCCCCcEEE
Confidence 4566788975 677899999999875
No 418
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=88.55 E-value=0.56 Score=32.79 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=16.7
Q ss_pred HHhcCCcEEEEccCCCCcchh
Q 031654 62 ILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 62 ~~l~g~dvl~~a~TGsGKT~~ 82 (155)
.......|++.+++||||+.+
T Consensus 17 ~a~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 17 LAKSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp HHCSSS-EEEECCTTSSHHHH
T ss_pred HhCCCCcEEEEcCCCCCHHHH
Confidence 344568999999999999986
No 419
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=88.45 E-value=0.23 Score=43.29 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=18.7
Q ss_pred HHhcCCcEEEEccCCCCcchhh
Q 031654 62 ILVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 62 ~~l~g~dvl~~a~TGsGKT~~y 83 (155)
.+-+|++++|++|+|+|||--+
T Consensus 457 ~V~~g~~LLItG~sG~GKtSLl 478 (659)
T KOG0060|consen 457 EVPSGQNLLITGPSGCGKTSLL 478 (659)
T ss_pred EecCCCeEEEECCCCCchhHHH
Confidence 4568999999999999999743
No 420
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=88.43 E-value=0.19 Score=40.18 Aligned_cols=84 Identities=19% Similarity=0.086 Sum_probs=48.9
Q ss_pred HHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCC-
Q 031654 61 SILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------RKELRELARWVDNLMATLRRLVNLLERGRVS- 129 (155)
Q Consensus 61 ~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~- 129 (155)
|+-..|+-+++.+..|.|||.+-. +...+++... ...+..+ -.+..++|-+.+.+...+....
T Consensus 89 ~A~k~g~l~~vyg~~g~gKt~a~~----~y~~s~p~~~l~~~~p~~~a~~~i~~i--~~~~~~~~~~~~~d~~~~~~~~l 162 (297)
T COG2842 89 PASKTGSLVVVYGYAGLGKTQAAK----NYAPSNPNALLIEADPSYTALVLILII--CAAAFGATDGTINDLTERLMIRL 162 (297)
T ss_pred hhhhcCceEEEeccccchhHHHHH----hhcccCccceeecCChhhHHHHHHHHH--HHHHhcccchhHHHHHHHHHHHH
Confidence 555678888889999999998742 1111111111 1111111 1345556666655555443222
Q ss_pred cccccceEEEEcccccccccccc
Q 031654 130 LQMIIRYLALKEAADQTLDMALN 152 (155)
Q Consensus 130 l~~l~~~lVlDEa~D~ll~~gf~ 152 (155)
...+ +.+++||| |+|.=.+|+
T Consensus 163 ~~~~-~~iivDEA-~~L~~~ale 183 (297)
T COG2842 163 RDTV-RLIIVDEA-DRLPYRALE 183 (297)
T ss_pred ccCc-ceeeeehh-hccChHHHH
Confidence 4566 89999999 999766654
No 421
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=88.32 E-value=0.41 Score=35.67 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=15.5
Q ss_pred CcEEEEccCCCCcchhhhhHHHH
Q 031654 67 RDLMACAQTGSRKTTPFCFPIIN 89 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~ 89 (155)
.++++.+.||||||.+-..-+.+
T Consensus 39 ~h~li~G~tgsGKS~~l~~ll~~ 61 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLRTLLLS 61 (205)
T ss_dssp -SEEEE--TTSSHHHHHHHHHHH
T ss_pred ceEEEEcCCCCCccHHHHHHHHH
Confidence 48999999999999875543333
No 422
>PHA00350 putative assembly protein
Probab=88.21 E-value=0.73 Score=38.53 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=13.8
Q ss_pred EEEEccCCCCcchhhhh
Q 031654 69 LMACAQTGSRKTTPFCF 85 (155)
Q Consensus 69 vl~~a~TGsGKT~~yll 85 (155)
.++.+..|||||+..+-
T Consensus 4 ~l~tG~pGSGKT~~aV~ 20 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVV 20 (399)
T ss_pred EEEecCCCCchhHHHHH
Confidence 46789999999997653
No 423
>PRK04328 hypothetical protein; Provisional
Probab=88.18 E-value=1.6 Score=33.79 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+++.+++|+|||.-
T Consensus 22 ~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 457899999999999874
No 424
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=88.17 E-value=2.6 Score=38.05 Aligned_cols=107 Identities=14% Similarity=0.186 Sum_probs=60.7
Q ss_pred HHHHHhHHhCCCCCCCHHHHHHHHHH--------hcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----HHHHHHH
Q 031654 38 QHLRNKPRTYKYVKPTPVQRHATSIL--------VAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----RKELREL 105 (155)
Q Consensus 38 ~~l~~~l~~~g~~~pt~iQ~~~i~~~--------l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----~~~~~~l 105 (155)
..-.+.|.+-.| -+..+-.+.+..+ .+|+=+..++|+|-|||...- .|...+.+.-... -....++
T Consensus 403 ~~Ak~iLdeDHY-gm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~k-SIA~ALnRkFfRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 403 ARAKEILDEDHY-GMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAK-SIARALNRKFFRFSVGGMTDVAEI 480 (906)
T ss_pred HHHHHhhccccc-chHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHH-HHHHHhCCceEEEeccccccHHhh
Confidence 444444544333 4566667777665 245678888999999997531 1222121111000 2233334
Q ss_pred hcCC-cEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccccccc
Q 031654 106 ARWV-DNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMALN 152 (155)
Q Consensus 106 ~~~~-~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf~ 152 (155)
+... --|=+-||++.+-|++-. ..+ -++.+||+ |++= .|+.
T Consensus 481 kGHRRTYVGAMPGkiIq~LK~v~--t~N--PliLiDEv-DKlG-~g~q 522 (906)
T KOG2004|consen 481 KGHRRTYVGAMPGKIIQCLKKVK--TEN--PLILIDEV-DKLG-SGHQ 522 (906)
T ss_pred cccceeeeccCChHHHHHHHhhC--CCC--ceEEeehh-hhhC-CCCC
Confidence 3322 345567999999987532 122 47889999 9986 4443
No 425
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=88.13 E-value=0.68 Score=33.88 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=33.7
Q ss_pred HHHHhHHhCCCCC-----CCHHHHHHHHHHhcCCcEEEEccCCCCcchh
Q 031654 39 HLRNKPRTYKYVK-----PTPVQRHATSILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 39 ~l~~~l~~~g~~~-----pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
++++..+++||.- -+......+...+.++-+++++++|.||+.-
T Consensus 3 ~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSSL 51 (161)
T PF03193_consen 3 ELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSSL 51 (161)
T ss_dssp HHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHHH
T ss_pred HHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHHH
Confidence 5566777888762 2445566777888899999999999999873
No 426
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=88.10 E-value=0.88 Score=40.72 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=54.7
Q ss_pred HHHHHhHHhCCCCCCCHHHHHHHHHH--------hcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-------HHHH
Q 031654 38 QHLRNKPRTYKYVKPTPVQRHATSIL--------VAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------RKEL 102 (155)
Q Consensus 38 ~~l~~~l~~~g~~~pt~iQ~~~i~~~--------l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------~~~~ 102 (155)
....+.|.+-.| -+-.+-.+.+..+ +.|.=++.++|+|.|||..- =.+...+.+.-... ...+
T Consensus 315 ~~a~~iLd~dHY-GLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLg-kSIA~al~RkfvR~sLGGvrDEAEI 392 (782)
T COG0466 315 KKAEKILDKDHY-GLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLG-KSIAKALGRKFVRISLGGVRDEAEI 392 (782)
T ss_pred HHHHHHhccccc-CchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHH-HHHHHHhCCCEEEEecCccccHHHh
Confidence 444455544433 2334444444433 24456778899999999742 12222111110000 2222
Q ss_pred HHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccc
Q 031654 103 RELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 103 ~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
+.-++ --+=+-|||+.+-+..-.. .+ -.+++||+ |+|=..
T Consensus 393 RGHRR--TYIGamPGrIiQ~mkka~~--~N--Pv~LLDEI-DKm~ss 432 (782)
T COG0466 393 RGHRR--TYIGAMPGKIIQGMKKAGV--KN--PVFLLDEI-DKMGSS 432 (782)
T ss_pred ccccc--cccccCChHHHHHHHHhCC--cC--CeEEeech-hhccCC
Confidence 22222 2355679999998876321 11 47899999 998643
No 427
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=88.06 E-value=0.27 Score=39.56 Aligned_cols=17 Identities=12% Similarity=0.132 Sum_probs=14.0
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
+=+++.||||||||...
T Consensus 5 ~ii~I~GpTasGKS~LA 21 (300)
T PRK14729 5 KIVFIFGPTAVGKSNIL 21 (300)
T ss_pred cEEEEECCCccCHHHHH
Confidence 34789999999999754
No 428
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=88.06 E-value=1.7 Score=34.81 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=15.6
Q ss_pred CcEEEEccCCCCcchhhh
Q 031654 67 RDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yl 84 (155)
+-++..+|+|+|||+-.-
T Consensus 206 KGvLmYGPPGTGKTlmAR 223 (424)
T KOG0652|consen 206 KGVLMYGPPGTGKTLMAR 223 (424)
T ss_pred CceEeeCCCCCcHHHHHH
Confidence 689999999999998643
No 429
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=87.97 E-value=0.46 Score=38.27 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhhhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPFCF 85 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~yll 85 (155)
.+..++.|.| +++.++||||||.+..=
T Consensus 66 ~v~~~l~G~n~~i~ayG~tgSGKT~Tm~G 94 (335)
T PF00225_consen 66 LVDSVLDGYNATIFAYGQTGSGKTYTMFG 94 (335)
T ss_dssp HHHHHHTT-EEEEEEEESTTSSHHHHHTB
T ss_pred HHHHhhcCCceEEEeeccccccccccccc
Confidence 4556789976 77789999999966433
No 430
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.91 E-value=0.31 Score=40.78 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=18.5
Q ss_pred HHHhcC-----CcEEEEccCCCCcchh
Q 031654 61 SILVAG-----RDLMACAQTGSRKTTP 82 (155)
Q Consensus 61 ~~~l~g-----~dvl~~a~TGsGKT~~ 82 (155)
|.+++| +-|+..+|+|||||+-
T Consensus 235 Pe~F~GirrPWkgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 235 PEFFKGIRRPWKGVLMVGPPGTGKTLL 261 (491)
T ss_pred HHHHhhcccccceeeeeCCCCCcHHHH
Confidence 555666 6899999999999984
No 431
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=87.90 E-value=0.51 Score=38.29 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=19.4
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..++.|.| +++.++||||||..-
T Consensus 72 ~v~~~~~G~n~~i~ayG~tgSGKTyTm 98 (334)
T cd01375 72 VVDSALDGYNGTIFAYGQTGAGKTFTM 98 (334)
T ss_pred HHHHHhCCCccceeeecCCCCCCeEEc
Confidence 3456788854 788899999999763
No 432
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=87.83 E-value=2.4 Score=35.39 Aligned_cols=22 Identities=32% Similarity=0.229 Sum_probs=16.5
Q ss_pred HhcCCcEEEEccCCCCcchhhh
Q 031654 63 LVAGRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 63 ~l~g~dvl~~a~TGsGKT~~yl 84 (155)
+..|.=+++.|++|+|||...+
T Consensus 191 ~~~g~liviag~pg~GKT~~al 212 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLAL 212 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHH
Confidence 3445667889999999997543
No 433
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.56 E-value=2.2 Score=33.79 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=17.2
Q ss_pred cCCcEEEEccCCCCcchhhhh
Q 031654 65 AGRDLMACAQTGSRKTTPFCF 85 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yll 85 (155)
.|..+++++++|+|||..+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~ 94 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAK 94 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHH
Confidence 346789999999999997654
No 434
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=87.47 E-value=0.33 Score=35.78 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
|..+++.+|+|||||...
T Consensus 2 g~~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLL 19 (186)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 567899999999999863
No 435
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=87.47 E-value=0.33 Score=40.60 Aligned_cols=17 Identities=24% Similarity=0.301 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
.+.+..+|+|+|||...
T Consensus 49 ~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 49 HSMILWGPPGTGKTTLA 65 (436)
T ss_pred ceeEEECCCCCCHHHHH
Confidence 58999999999999854
No 436
>PRK09354 recA recombinase A; Provisional
Probab=87.46 E-value=1.3 Score=36.38 Aligned_cols=80 Identities=16% Similarity=0.046 Sum_probs=41.4
Q ss_pred CCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------HHHHHHHh-cCCcEEEEChHHHHHHHHc--CCCCcccc
Q 031654 66 GRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------RKELRELA-RWVDNLMATLRRLVNLLER--GRVSLQMI 133 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------~~~~~~l~-~~~~IlI~TP~~l~~~l~~--~~~~l~~l 133 (155)
|+=+.+.+|+|||||.-.+--+.+......... ....+.+. .--++++..|....+.+.. ..+.-..+
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~ 139 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAV 139 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCC
Confidence 457889999999999865444433332221111 11111110 0124777776332222211 11122467
Q ss_pred cceEEEEccccccc
Q 031654 134 IRYLALKEAADQTL 147 (155)
Q Consensus 134 ~~~lVlDEa~D~ll 147 (155)
+++|+|-+ -.+.
T Consensus 140 -~lIVIDSv-aaL~ 151 (349)
T PRK09354 140 -DLIVVDSV-AALV 151 (349)
T ss_pred -CEEEEeCh-hhhc
Confidence 89999998 6655
No 437
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=87.40 E-value=0.61 Score=35.25 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=20.2
Q ss_pred cCCcEEEEccCCCCcchhhhhHHHHHHHH
Q 031654 65 AGRDLMACAQTGSRKTTPFCFPIINGIMR 93 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yllp~l~~l~~ 93 (155)
.|.-+++.+++|||||.-.+--+.+.+..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~ 46 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN 46 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh
Confidence 44789999999999998644334444443
No 438
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=87.38 E-value=0.54 Score=37.82 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=20.2
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPFC 84 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~yl 84 (155)
.+..++.|.| +++.++||||||.+..
T Consensus 65 ~v~~~l~G~n~~i~ayG~tgSGKT~T~~ 92 (321)
T cd01374 65 VVRSALEGYNGTIFAYGQTSSGKTFTMS 92 (321)
T ss_pred HHHHHHCCCceeEEeecCCCCCCceecc
Confidence 4566688865 7788999999997753
No 439
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=87.13 E-value=1.2 Score=39.46 Aligned_cols=33 Identities=36% Similarity=0.364 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHhcC-----CcEEEEccCCCCcchhh
Q 031654 51 KPTPVQRHATSILVAG-----RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g-----~dvl~~a~TGsGKT~~y 83 (155)
.|++.|..++..+.++ +..++.+.+||||++..
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~li 49 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTM 49 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHH
Confidence 7899999999988543 25779999999999874
No 440
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=87.09 E-value=1.6 Score=35.34 Aligned_cols=78 Identities=9% Similarity=0.070 Sum_probs=41.5
Q ss_pred cEEEEccCCCCcchhhhhHHHHHHHHhh-h---ch--HHHHHHHh--cCCcEEEEChH-------HHHHHHHc--CCCCc
Q 031654 68 DLMACAQTGSRKTTPFCFPIINGIMREY-Y---SA--RKELRELA--RWVDNLMATLR-------RLVNLLER--GRVSL 130 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yllp~l~~l~~~~-~---~~--~~~~~~l~--~~~~IlI~TP~-------~l~~~l~~--~~~~l 130 (155)
-.+..||.|+||+..... +...+.... . .+ ....+.+. ..+|+.+..|+ .+.++... ..-..
T Consensus 30 a~Lf~G~~G~gk~~~a~~-la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~ 108 (329)
T PRK08058 30 AYLFEGAKGTGKKATALW-LAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVE 108 (329)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcc
Confidence 358999999999764322 222222211 0 00 12222222 34678777663 23333321 11134
Q ss_pred ccccceEEEEcccccccc
Q 031654 131 QMIIRYLALKEAADQTLD 148 (155)
Q Consensus 131 ~~l~~~lVlDEa~D~ll~ 148 (155)
..- +.+||||| |+|=+
T Consensus 109 ~~~-kvviI~~a-~~~~~ 124 (329)
T PRK08058 109 SNK-KVYIIEHA-DKMTA 124 (329)
T ss_pred cCc-eEEEeehH-hhhCH
Confidence 566 89999999 98854
No 441
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.96 E-value=1.3 Score=38.76 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=14.6
Q ss_pred cEEEEccCCCCcchhhhh
Q 031654 68 DLMACAQTGSRKTTPFCF 85 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yll 85 (155)
-.+++||.|+|||.+..+
T Consensus 40 ayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 40 AFLFTGARGVGKTSTARI 57 (576)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 358999999999987543
No 442
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=86.95 E-value=0.53 Score=36.87 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=20.0
Q ss_pred EEEEccCCCCcchhhhhHHHHHHHHhhh
Q 031654 69 LMACAQTGSRKTTPFCFPIINGIMREYY 96 (155)
Q Consensus 69 vl~~a~TGsGKT~~yllp~l~~l~~~~~ 96 (155)
.+|.+|+|||||. |+..+.+.+....+
T Consensus 5 qvVIGPPgSGKsT-Yc~g~~~fls~~gr 31 (290)
T KOG1533|consen 5 QVVIGPPGSGKST-YCNGMSQFLSAIGR 31 (290)
T ss_pred eEEEcCCCCCccc-hhhhHHHHHHHhCC
Confidence 4789999999985 77776666655444
No 443
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=86.83 E-value=1.3 Score=35.91 Aligned_cols=79 Identities=18% Similarity=0.061 Sum_probs=41.8
Q ss_pred CCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------HHHHHHHh-cCCcEEEEChHHHHHHHHc--CCCCccc
Q 031654 66 GRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------RKELRELA-RWVDNLMATLRRLVNLLER--GRVSLQM 132 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------~~~~~~l~-~~~~IlI~TP~~l~~~l~~--~~~~l~~ 132 (155)
|+=+.+.+|+|||||.-.+- ++.......... ....+.+. .--++++..|....+.+.. ..+.-..
T Consensus 55 G~iteI~G~~GsGKTtLaL~-~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~ 133 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALH-AIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGA 133 (321)
T ss_pred CeEEEEECCCCCCHHHHHHH-HHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccC
Confidence 46788999999999986543 333333222211 11111110 0125677777543333221 1122246
Q ss_pred ccceEEEEccccccc
Q 031654 133 IIRYLALKEAADQTL 147 (155)
Q Consensus 133 l~~~lVlDEa~D~ll 147 (155)
+ +++|+|-+ ..+.
T Consensus 134 ~-~lIVIDSv-~al~ 146 (321)
T TIGR02012 134 V-DIIVVDSV-AALV 146 (321)
T ss_pred C-cEEEEcch-hhhc
Confidence 7 89999999 7665
No 444
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=86.80 E-value=0.37 Score=39.95 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=17.3
Q ss_pred hcCCcEEEEccCCCCcchhh
Q 031654 64 VAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~y 83 (155)
+.|+-+++.+|+|||||...
T Consensus 63 ~aGrgiLi~GppgTGKTAlA 82 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALA 82 (450)
T ss_pred ccccEEEEECCCCCcHHHHH
Confidence 56789999999999999743
No 445
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=86.79 E-value=2.9 Score=37.86 Aligned_cols=45 Identities=24% Similarity=0.329 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHh---cC-------CcEEEEccCCCCcchhhhhHHHHHHHHhhh
Q 031654 51 KPTPVQRHATSILV---AG-------RDLMACAQTGSRKTTPFCFPIINGIMREYY 96 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l---~g-------~dvl~~a~TGsGKT~~yllp~l~~l~~~~~ 96 (155)
.+.|+|++.+..+. .| .-.++.-..|+|||+-. ++.+..+.+..+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq~P 292 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQFP 292 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHhCc
Confidence 56899999998774 22 23667778899999864 455555554433
No 446
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=86.78 E-value=0.56 Score=38.03 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=19.4
Q ss_pred HHHHhcCCc--EEEEccCCCCcchhh
Q 031654 60 TSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 60 i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
+..++.|.| +++.++||||||.+.
T Consensus 66 v~~~~~G~n~~i~ayG~tgSGKT~Tm 91 (341)
T cd01372 66 VDGLFEGYNATVLAYGQTGSGKTYTM 91 (341)
T ss_pred HHHHhCCCccceeeecCCCCCCcEEe
Confidence 455678864 788999999999885
No 447
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=86.71 E-value=0.63 Score=37.51 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=21.2
Q ss_pred HHHHHHhcCCcEEEEccCCCCcchh
Q 031654 58 HATSILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 58 ~~i~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
.++-.++.|+.+++.+++|+|||..
T Consensus 35 ~~l~a~~~~~~vll~G~PG~gKT~l 59 (329)
T COG0714 35 LALLALLAGGHVLLEGPPGVGKTLL 59 (329)
T ss_pred HHHHHHHcCCCEEEECCCCccHHHH
Confidence 3445678999999999999999985
No 448
>PLN02165 adenylate isopentenyltransferase
Probab=86.61 E-value=0.4 Score=39.12 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCCcchhhh
Q 031654 65 AGRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yl 84 (155)
.|+-+++.+|||||||....
T Consensus 42 ~g~iivIiGPTGSGKStLA~ 61 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSV 61 (334)
T ss_pred CCCEEEEECCCCCcHHHHHH
Confidence 45679999999999997653
No 449
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=86.59 E-value=0.38 Score=39.95 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=14.9
Q ss_pred hcCCcEEEEccCCCCcchhh
Q 031654 64 VAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~y 83 (155)
+.|+-+++.+|+|||||...
T Consensus 48 ~aGr~iLiaGppGtGKTAlA 67 (398)
T PF06068_consen 48 IAGRAILIAGPPGTGKTALA 67 (398)
T ss_dssp -TT-EEEEEE-TTSSHHHHH
T ss_pred ccCcEEEEeCCCCCCchHHH
Confidence 36789999999999999753
No 450
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=86.55 E-value=0.27 Score=42.34 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCcchh
Q 031654 66 GRDLMACAQTGSRKTTP 82 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~ 82 (155)
.+.+++.+|+|+|||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 36899999999999985
No 451
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=86.51 E-value=0.4 Score=36.33 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
++++.|.|.||||||...
T Consensus 23 ~~H~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTV 40 (229)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 579999999999999864
No 452
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=86.48 E-value=0.94 Score=36.68 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=11.0
Q ss_pred ceEEEEcccccccc
Q 031654 135 RYLALKEAADQTLD 148 (155)
Q Consensus 135 ~~lVlDEa~D~ll~ 148 (155)
..+|+||+ |+|-.
T Consensus 180 slFIFDE~-DKmp~ 192 (344)
T KOG2170|consen 180 SLFIFDEV-DKLPP 192 (344)
T ss_pred ceEEechh-hhcCH
Confidence 68999999 99853
No 453
>PRK00131 aroK shikimate kinase; Reviewed
Probab=86.42 E-value=0.34 Score=34.57 Aligned_cols=18 Identities=22% Similarity=0.339 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.+..+++++++|||||..
T Consensus 3 ~~~~i~l~G~~GsGKstl 20 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTI 20 (175)
T ss_pred CCCeEEEEcCCCCCHHHH
Confidence 567899999999999976
No 454
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=86.38 E-value=0.19 Score=39.11 Aligned_cols=45 Identities=29% Similarity=0.249 Sum_probs=26.5
Q ss_pred HHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhh
Q 031654 39 HLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 39 ~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~y 83 (155)
+++++|...|.....+.--..+.-+..|.-+++.|++|+|||...
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~ 47 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFL 47 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHH
Confidence 455555533333222222222234566788999999999999743
No 455
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=86.36 E-value=6 Score=35.83 Aligned_cols=64 Identities=14% Similarity=0.116 Sum_probs=43.5
Q ss_pred hHHhCCCCCCCHHHHHHHHHHhcC--CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHH
Q 031654 43 KPRTYKYVKPTPVQRHATSILVAG--RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRR 118 (155)
Q Consensus 43 ~l~~~g~~~pt~iQ~~~i~~~l~g--~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~ 118 (155)
.+.....+.+..-|.+.+..++.+ +-+++.|.-|-|||.+.-+.+.. + ..+....+|+|+.|..
T Consensus 206 ~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~-----------~~~~~~~~iiVTAP~~ 271 (758)
T COG1444 206 ELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-A-----------ARLAGSVRIIVTAPTP 271 (758)
T ss_pred HHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH-H-----------HHhcCCceEEEeCCCH
Confidence 366666666677777777777766 36888999999999987766522 1 1111156888888854
No 456
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=86.33 E-value=2.7 Score=37.06 Aligned_cols=41 Identities=32% Similarity=0.203 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHH
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMR 93 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~ 93 (155)
.+++-|.++.... ...++|.|..|||||-+-.--+...+..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~ 42 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAA 42 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHc
Confidence 5788999988665 6678889999999998865554444443
No 457
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=86.33 E-value=1.4 Score=36.94 Aligned_cols=67 Identities=13% Similarity=0.065 Sum_probs=40.1
Q ss_pred CCcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHH----HcCC-----CCcccccce
Q 031654 66 GRDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLL----ERGR-----VSLQMIIRY 136 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l----~~~~-----~~l~~l~~~ 136 (155)
..-+++.|++|+|||.- + +.+ ..........+.++-.|.+.+..-+ ..+. -.. ++ ++
T Consensus 113 ~nplfi~G~~GlGKTHL--l---~Ai-------gn~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y-~~-dl 178 (408)
T COG0593 113 YNPLFIYGGVGLGKTHL--L---QAI-------GNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY-SL-DL 178 (408)
T ss_pred CCcEEEECCCCCCHHHH--H---HHH-------HHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh-cc-Ce
Confidence 35799999999999973 2 111 1122333334577888887754222 1111 123 78 89
Q ss_pred EEEEccccccc
Q 031654 137 LALKEAADQTL 147 (155)
Q Consensus 137 lVlDEa~D~ll 147 (155)
|++|++ +.+-
T Consensus 179 llIDDi-q~l~ 188 (408)
T COG0593 179 LLIDDI-QFLA 188 (408)
T ss_pred eeechH-hHhc
Confidence 999999 6554
No 458
>PRK00300 gmk guanylate kinase; Provisional
Probab=86.27 E-value=0.43 Score=35.41 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|+-+++.||+|||||..
T Consensus 4 ~g~~i~i~G~sGsGKstl 21 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTL 21 (205)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567899999999999963
No 459
>PRK11823 DNA repair protein RadA; Provisional
Probab=86.26 E-value=1.8 Score=36.73 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
|.-+++.+++|+|||.-.
T Consensus 80 Gs~~lI~G~pG~GKTtL~ 97 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLL 97 (446)
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 457889999999999853
No 460
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=86.25 E-value=0.44 Score=34.67 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|+-+++++++|||||...
T Consensus 1 ~~~~i~l~G~~gsGKst~a 19 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIA 19 (175)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3677999999999999763
No 461
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=86.21 E-value=0.44 Score=41.57 Aligned_cols=52 Identities=13% Similarity=0.163 Sum_probs=29.7
Q ss_pred HHHHHhHHhCCCCCCCHHHHHHHHH---HhcCCcEEEEccCCCCcchhhhhHHHHHHH
Q 031654 38 QHLRNKPRTYKYVKPTPVQRHATSI---LVAGRDLMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 38 ~~l~~~l~~~g~~~pt~iQ~~~i~~---~l~g~dvl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
.++.+.+++.+-. .++.-.-+|. -...+++++.|+||||||.+ +-.++..+.
T Consensus 147 ~~l~~~l~~~~~~--~~~~igg~pl~~~~~e~~h~li~G~tGsGKs~~-i~~ll~~~~ 201 (566)
T TIGR02759 147 KELIKKLKKSRRA--SDIKIGGLPLIKFGSETQHILIHGTTGSGKSVA-IRKLLRWIR 201 (566)
T ss_pred HHHHHHHHhcCCC--CceeeCCccCCCCcccccceEEEcCCCCCHHHH-HHHHHHHHH
Confidence 5566666655522 2222222343 23447999999999999963 233444443
No 462
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=86.18 E-value=0.59 Score=41.38 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=16.3
Q ss_pred CcEEEEccCCCCcchhhhh
Q 031654 67 RDLMACAQTGSRKTTPFCF 85 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yll 85 (155)
.++++.|+||+|||..+.+
T Consensus 177 ~H~lv~G~TGsGKT~l~~~ 195 (634)
T TIGR03743 177 GHTLVLGTTGVGKTRLAEL 195 (634)
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 6899999999999987643
No 463
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.16 E-value=1.8 Score=38.33 Aligned_cols=17 Identities=24% Similarity=0.153 Sum_probs=14.6
Q ss_pred cEEEEccCCCCcchhhh
Q 031654 68 DLMACAQTGSRKTTPFC 84 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yl 84 (155)
-++.+||.|+|||.+..
T Consensus 40 a~Lf~Gp~GvGKttlA~ 56 (620)
T PRK14954 40 GYIFSGLRGVGKTTAAR 56 (620)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48899999999998754
No 464
>PRK14974 cell division protein FtsY; Provisional
Probab=86.05 E-value=1.8 Score=35.40 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=14.0
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
.=+++++++|+|||..-
T Consensus 141 ~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTI 157 (336)
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 34788999999999864
No 465
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.01 E-value=2.6 Score=38.07 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=13.7
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
+=++.|+|.|-|||..
T Consensus 327 KilLL~GppGlGKTTL 342 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTL 342 (877)
T ss_pred ceEEeecCCCCChhHH
Confidence 3579999999999984
No 466
>PRK05973 replicative DNA helicase; Provisional
Probab=85.97 E-value=0.51 Score=36.68 Aligned_cols=39 Identities=23% Similarity=0.152 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHH
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIING 90 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~ 90 (155)
.+||... ...-+..|.-+++.|++|+|||.-.+--+.+.
T Consensus 50 ~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~ 88 (237)
T PRK05973 50 ATTPAEE-LFSQLKPGDLVLLGARPGHGKTLLGLELAVEA 88 (237)
T ss_pred CCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4566322 33445566789999999999998654333333
No 467
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=85.96 E-value=2.1 Score=37.41 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=15.0
Q ss_pred cEEEEccCCCCcchhhhh
Q 031654 68 DLMACAQTGSRKTTPFCF 85 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yll 85 (155)
-.+++||.|+|||.+..+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987643
No 468
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=85.95 E-value=0.64 Score=37.92 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=18.6
Q ss_pred HHHHhcCCc--EEEEccCCCCcchhh
Q 031654 60 TSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 60 i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
+..++.|.| +++.++||||||.+.
T Consensus 74 v~~~~~G~n~~i~ayG~tgSGKTyTl 99 (352)
T cd01364 74 LDEVLMGYNCTIFAYGQTGTGKTYTM 99 (352)
T ss_pred HHHHhCCCeEEEEECCCCCCCCcEEe
Confidence 455678876 677899999999653
No 469
>PRK07261 topology modulation protein; Provisional
Probab=85.90 E-value=0.41 Score=34.96 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=13.6
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
-++++|++|||||...
T Consensus 2 ri~i~G~~GsGKSTla 17 (171)
T PRK07261 2 KIAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3789999999999754
No 470
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=85.90 E-value=0.41 Score=33.70 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=12.1
Q ss_pred EEEEccCCCCcchh
Q 031654 69 LMACAQTGSRKTTP 82 (155)
Q Consensus 69 vl~~a~TGsGKT~~ 82 (155)
+++.+|||||||..
T Consensus 2 i~i~GpsGsGKstl 15 (137)
T cd00071 2 IVLSGPSGVGKSTL 15 (137)
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999973
No 471
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=85.77 E-value=0.44 Score=39.95 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
..++++.+|||+|||...
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 367999999999999864
No 472
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=85.77 E-value=0.99 Score=36.22 Aligned_cols=26 Identities=31% Similarity=0.426 Sum_probs=19.9
Q ss_pred HHHHHHHhcCCc--EEEEccCCCCcchh
Q 031654 57 RHATSILVAGRD--LMACAQTGSRKTTP 82 (155)
Q Consensus 57 ~~~i~~~l~g~d--vl~~a~TGsGKT~~ 82 (155)
...+..++.|.| +++.++||||||..
T Consensus 68 ~~~v~~~~~G~~~~i~~yG~tgSGKT~t 95 (328)
T cd00106 68 KPLVESVLEGYNGTIFAYGQTGSGKTYT 95 (328)
T ss_pred HHHHHHHhCCCceeEEEecCCCCCCeEE
Confidence 345566688865 67789999999965
No 473
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=85.66 E-value=0.66 Score=33.62 Aligned_cols=15 Identities=27% Similarity=0.206 Sum_probs=13.1
Q ss_pred EEEEccCCCCcchhh
Q 031654 69 LMACAQTGSRKTTPF 83 (155)
Q Consensus 69 vl~~a~TGsGKT~~y 83 (155)
+++.+++|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 689999999999854
No 474
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=85.66 E-value=1 Score=36.71 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=19.4
Q ss_pred HHHHHhcCCcEEEEccCCCCcchh
Q 031654 59 ATSILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 59 ~i~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
.+-.+..++++++.+++|+|||..
T Consensus 57 vl~~l~~~~~ilL~G~pGtGKTtl 80 (327)
T TIGR01650 57 ICAGFAYDRRVMVQGYHGTGKSTH 80 (327)
T ss_pred HHHHHhcCCcEEEEeCCCChHHHH
Confidence 334456689999999999999985
No 475
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=85.49 E-value=0.77 Score=37.21 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=18.9
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTP 82 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~ 82 (155)
.+..++.|.| +++.++||||||..
T Consensus 73 lv~~~~~G~n~~i~ayG~tgSGKTyT 98 (333)
T cd01371 73 LVDSVLEGYNGTIFAYGQTGTGKTFT 98 (333)
T ss_pred HHHHHhCCCceeEEecCCCCCCCcEe
Confidence 4456688865 78889999999955
No 476
>PRK08118 topology modulation protein; Reviewed
Probab=85.47 E-value=0.45 Score=34.70 Aligned_cols=15 Identities=27% Similarity=0.353 Sum_probs=13.2
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
-++|+|++|||||..
T Consensus 3 rI~I~G~~GsGKSTl 17 (167)
T PRK08118 3 KIILIGSGGSGKSTL 17 (167)
T ss_pred EEEEECCCCCCHHHH
Confidence 489999999999974
No 477
>PF05729 NACHT: NACHT domain
Probab=85.46 E-value=0.49 Score=33.24 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=16.6
Q ss_pred EEEEccCCCCcchhhhhHHHHHHHH
Q 031654 69 LMACAQTGSRKTTPFCFPIINGIMR 93 (155)
Q Consensus 69 vl~~a~TGsGKT~~yllp~l~~l~~ 93 (155)
+++.|++|+|||... --++..+..
T Consensus 3 l~I~G~~G~GKStll-~~~~~~~~~ 26 (166)
T PF05729_consen 3 LWISGEPGSGKSTLL-RKLAQQLAE 26 (166)
T ss_pred EEEECCCCCChHHHH-HHHHHHHHh
Confidence 789999999999853 334444433
No 478
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=85.38 E-value=0.88 Score=39.04 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHh-------cCCcEEEEccCCCCcchhh
Q 031654 53 TPVQRHATSILV-------AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 53 t~iQ~~~i~~~l-------~g~dvl~~a~TGsGKT~~y 83 (155)
++||......+- .|.=+.++||+|||||.--
T Consensus 12 r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLL 49 (504)
T TIGR03238 12 RKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEIL 49 (504)
T ss_pred hHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHH
Confidence 788888776663 5788999999999999853
No 479
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=85.37 E-value=1.2 Score=34.46 Aligned_cols=27 Identities=22% Similarity=0.089 Sum_probs=17.6
Q ss_pred CCcEEEEccCCCCcchhhhhHHHHHHHH
Q 031654 66 GRDLMACAQTGSRKTTPFCFPIINGIMR 93 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yllp~l~~l~~ 93 (155)
|.=+++.|+||.|||...+ -++..+..
T Consensus 19 g~L~vi~a~pg~GKT~~~l-~ia~~~a~ 45 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFAL-QIALNAAL 45 (259)
T ss_dssp T-EEEEEESTTSSHHHHHH-HHHHHHHH
T ss_pred CcEEEEEecccCCchHHHH-HHHHHHHH
Confidence 3457888999999998544 44444433
No 480
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=85.31 E-value=0.51 Score=36.46 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=16.0
Q ss_pred hcCCcEEEEccCCCCcchh
Q 031654 64 VAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~ 82 (155)
..|.=+++++|+|||||.-
T Consensus 26 ~~Gevv~iiGpSGSGKSTl 44 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTL 44 (240)
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4677789999999999874
No 481
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=85.28 E-value=1 Score=36.37 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=19.8
Q ss_pred HHHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 58 HATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 58 ~~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
..+..++.|.| +++.++||||||.+.
T Consensus 70 p~v~~~~~G~~~~i~~yG~tgSGKT~tl 97 (335)
T smart00129 70 PLVDSVLEGYNATIFAYGQTGSGKTYTM 97 (335)
T ss_pred HHHHHHhcCCceeEEEeCCCCCCCceEe
Confidence 34556788865 677899999999664
No 482
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=85.27 E-value=0.44 Score=38.49 Aligned_cols=15 Identities=27% Similarity=0.231 Sum_probs=12.9
Q ss_pred EEEEccCCCCcchhh
Q 031654 69 LMACAQTGSRKTTPF 83 (155)
Q Consensus 69 vl~~a~TGsGKT~~y 83 (155)
+++++||+||||--.
T Consensus 6 i~I~GPTAsGKT~la 20 (308)
T COG0324 6 IVIAGPTASGKTALA 20 (308)
T ss_pred EEEECCCCcCHHHHH
Confidence 789999999999743
No 483
>PLN03130 ABC transporter C family member; Provisional
Probab=85.15 E-value=0.3 Score=47.57 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=19.9
Q ss_pred hcCCcEEEEccCCCCcchhhhhHHHHHHH
Q 031654 64 VAGRDLMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
-.|+-+-++|+||||||.. +-++.++.
T Consensus 1263 ~~GekVaIVGrSGSGKSTL--l~lL~rl~ 1289 (1622)
T PLN03130 1263 SPSEKVGIVGRTGAGKSSM--LNALFRIV 1289 (1622)
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHhCcC
Confidence 4678899999999999974 33444443
No 484
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=85.14 E-value=0.46 Score=37.94 Aligned_cols=17 Identities=18% Similarity=0.301 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCcchh
Q 031654 66 GRDLMACAQTGSRKTTP 82 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~ 82 (155)
-+||+..+|+|+|||+.
T Consensus 151 PknVLFyGppGTGKTm~ 167 (368)
T COG1223 151 PKNVLFYGPPGTGKTMM 167 (368)
T ss_pred cceeEEECCCCccHHHH
Confidence 37999999999999985
No 485
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=85.12 E-value=0.49 Score=39.74 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
.++++.+|||+|||...
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 57999999999999864
No 486
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=85.05 E-value=0.45 Score=34.96 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=12.8
Q ss_pred cEEEEccCCCCcch
Q 031654 68 DLMACAQTGSRKTT 81 (155)
Q Consensus 68 dvl~~a~TGsGKT~ 81 (155)
+++..+|||+|||.
T Consensus 5 ~~ll~GpsGvGKT~ 18 (171)
T PF07724_consen 5 NFLLAGPSGVGKTE 18 (171)
T ss_dssp EEEEESSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 68899999999996
No 487
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=85.02 E-value=0.52 Score=36.38 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=19.6
Q ss_pred hcCCcEEEEccCCCCcchhhhhHHHHHHH
Q 031654 64 VAGRDLMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
-.|.-+.+.+|+|||||.- +-++..+.
T Consensus 29 ~~Ge~vaI~GpSGSGKSTL--Lniig~ld 55 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTL--LNLLGGLD 55 (226)
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHhccc
Confidence 4678899999999999873 44444333
No 488
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=84.99 E-value=0.53 Score=32.39 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+++|||||.-
T Consensus 10 ~g~~~~i~G~nGsGKStL 27 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTL 27 (137)
T ss_dssp TTSEEEEEESTTSSHHHH
T ss_pred CCCEEEEEccCCCccccc
Confidence 577889999999999975
No 489
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=84.94 E-value=0.43 Score=46.21 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCCCcchh
Q 031654 64 VAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~ 82 (155)
-.|+-+-++++||||||..
T Consensus 1310 ~~GekiaIVGrTGsGKSTL 1328 (1522)
T TIGR00957 1310 HGGEKVGIVGRTGAGKSSL 1328 (1522)
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3678899999999999974
No 490
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=84.65 E-value=0.56 Score=41.54 Aligned_cols=85 Identities=15% Similarity=0.178 Sum_probs=54.6
Q ss_pred HHHHHh-HHhCCCCC--CCHHHHH-----HHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCC
Q 031654 38 QHLRNK-PRTYKYVK--PTPVQRH-----ATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWV 109 (155)
Q Consensus 38 ~~l~~~-l~~~g~~~--pt~iQ~~-----~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~ 109 (155)
++.+.. |++.||+. .+.-|+. .+|.+-+.-|++=-+|-|||||..| +++....
T Consensus 180 dEWid~LlrSiG~eP~~~~~r~K~~~L~RliPlVE~N~Nl~ELgPrgTGKS~~y-------------------~eiSp~~ 240 (675)
T TIGR02653 180 DEWIDVLLRSVGMEPTNLERRTKWHLLTRLIPLVENNYNLCELGPRGTGKSHVY-------------------KECSPNS 240 (675)
T ss_pred HHHHHHHHHhcCCCccccCHHHHHHHHHhhhhhcccccceEEECCCCCCcceee-------------------eccCCce
Confidence 555554 46688863 3444443 4577778889999999999999987 2333323
Q ss_pred cEEEE----ChHHHHHHHHcCCCC-cccccceEEEEccc
Q 031654 110 DNLMA----TLRRLVNLLERGRVS-LQMIIRYLALKEAA 143 (155)
Q Consensus 110 ~IlI~----TP~~l~~~l~~~~~~-l~~l~~~lVlDEa~ 143 (155)
++|+ |+.+|..-+.++.+- ...- +.+++||+|
T Consensus 241 -~liSGG~~T~A~LFyn~~~~~~GlVg~~-D~VaFDEva 277 (675)
T TIGR02653 241 -ILMSGGQTTVANLFYNMSTRQIGLVGMW-DVVAFDEVA 277 (675)
T ss_pred -EEEECCccchhHeeEEcCCCceeEEeec-cEEEEeecc
Confidence 3443 777766555555432 3344 679999993
No 491
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=84.60 E-value=0.55 Score=34.04 Aligned_cols=17 Identities=24% Similarity=0.304 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCCcchh
Q 031654 66 GRDLMACAQTGSRKTTP 82 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~ 82 (155)
|+=+++.+|+|||||..
T Consensus 1 g~ii~l~G~~GsGKsTl 17 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTL 17 (180)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45578999999999984
No 492
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=84.56 E-value=0.53 Score=37.97 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
+=+++++|||||||...
T Consensus 5 ~~i~i~GptgsGKt~la 21 (307)
T PRK00091 5 KVIVIVGPTASGKTALA 21 (307)
T ss_pred eEEEEECCCCcCHHHHH
Confidence 34789999999999764
No 493
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=84.50 E-value=1.2 Score=36.79 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCcchhhh
Q 031654 66 GRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yl 84 (155)
|.=+++.+++|+|||.-.+
T Consensus 82 GslvLI~G~pG~GKStLll 100 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLL 100 (372)
T ss_pred CeEEEEEeCCCCCHHHHHH
Confidence 4678899999999998543
No 494
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=84.43 E-value=0.55 Score=34.08 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
+-+++.+|+|||||...
T Consensus 2 ~~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLL 18 (179)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45789999999999865
No 495
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=84.43 E-value=0.53 Score=36.70 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=16.9
Q ss_pred CcEEEEccCCCCcchhhhhHHHHH
Q 031654 67 RDLMACAQTGSRKTTPFCFPIING 90 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~ 90 (155)
-.+++.|++|||||. +++-++..
T Consensus 14 fr~viIG~sGSGKT~-li~~lL~~ 36 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTT-LIKSLLYY 36 (241)
T ss_pred ceEEEECCCCCCHHH-HHHHHHHh
Confidence 378999999999997 44444433
No 496
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=84.40 E-value=0.95 Score=36.50 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=20.5
Q ss_pred HHHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 58 HATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 58 ~~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
..+..++.|.| +++.++||||||.+.
T Consensus 68 p~v~~~~~G~~~~i~ayG~tgSGKT~tl 95 (329)
T cd01366 68 PLVQSALDGYNVCIFAYGQTGSGKTYTM 95 (329)
T ss_pred HHHHHHhCCCceEEEEeCCCCCCCcEEe
Confidence 35566778965 778899999999875
No 497
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=84.28 E-value=1 Score=38.12 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=15.1
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
+++++.+|||+|||...
T Consensus 48 ~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIA 64 (441)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 68999999999999753
No 498
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=84.19 E-value=0.44 Score=42.52 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=16.7
Q ss_pred hcCCcEEEEccCCCCcchh
Q 031654 64 VAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~ 82 (155)
-.|+-+.+++|+|||||..
T Consensus 505 ~~Ge~vaIvG~SGsGKSTL 523 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTV 523 (711)
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4678899999999999975
No 499
>PRK06620 hypothetical protein; Validated
Probab=84.10 E-value=0.55 Score=35.71 Aligned_cols=16 Identities=25% Similarity=0.104 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
+.++++||+|||||.-
T Consensus 45 ~~l~l~Gp~G~GKThL 60 (214)
T PRK06620 45 FTLLIKGPSSSGKTYL 60 (214)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4589999999999985
No 500
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=84.06 E-value=0.9 Score=34.85 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=19.3
Q ss_pred cCCcEEEEccCCCCcchhhhhHHHHHH
Q 031654 65 AGRDLMACAQTGSRKTTPFCFPIINGI 91 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yllp~l~~l 91 (155)
.|..+++.+++|+|||.-.+--+.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~ 46 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL 46 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 357899999999999985443344444
Done!