Query 031654
Match_columns 155
No_of_seqs 212 out of 1168
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 05:02:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 5.2E-34 1.8E-38 235.0 14.8 149 3-153 28-222 (434)
2 3fe2_A Probable ATP-dependent 100.0 1.1E-31 3.6E-36 205.3 11.2 136 16-153 14-195 (242)
3 1wrb_A DJVLGB; RNA helicase, D 100.0 6.6E-32 2.3E-36 207.3 9.6 141 11-153 1-193 (253)
4 3iuy_A Probable ATP-dependent 100.0 2.5E-30 8.7E-35 195.5 9.5 131 21-153 9-186 (228)
5 2i4i_A ATP-dependent RNA helic 100.0 4.5E-29 1.5E-33 202.1 12.1 133 19-153 3-194 (417)
6 3fmo_B ATP-dependent RNA helic 100.0 4.2E-30 1.4E-34 203.1 5.8 123 29-153 90-255 (300)
7 3dkp_A Probable ATP-dependent 100.0 9E-30 3.1E-34 194.3 5.2 131 17-149 11-190 (245)
8 3bor_A Human initiation factor 100.0 3.1E-29 1.1E-33 191.2 7.4 131 21-153 20-192 (237)
9 2oxc_A Probable ATP-dependent 100.0 1.1E-28 3.8E-33 187.2 10.1 131 21-153 14-186 (230)
10 3ber_A Probable ATP-dependent 100.0 3.1E-28 1.1E-32 187.4 11.1 124 28-153 40-205 (249)
11 1vec_A ATP-dependent RNA helic 100.0 3.1E-28 1.1E-32 180.9 10.7 121 31-153 3-165 (206)
12 3ly5_A ATP-dependent RNA helic 99.9 6.3E-28 2.2E-32 186.9 10.1 115 37-153 62-220 (262)
13 1q0u_A Bstdead; DEAD protein, 99.9 1.3E-28 4.3E-33 185.3 5.5 122 30-153 3-169 (219)
14 2gxq_A Heat resistant RNA depe 99.9 1.2E-27 3.9E-32 177.7 9.9 120 32-153 2-163 (207)
15 1qde_A EIF4A, translation init 99.9 1.2E-27 4.3E-32 179.9 9.9 128 24-153 7-174 (224)
16 2pl3_A Probable ATP-dependent 99.9 1.9E-27 6.6E-32 180.5 10.8 124 27-153 21-190 (236)
17 2j0s_A ATP-dependent RNA helic 99.9 5E-27 1.7E-31 190.1 11.4 138 14-153 20-198 (410)
18 1t6n_A Probable ATP-dependent 99.9 7.9E-27 2.7E-31 175.2 9.9 128 23-152 6-177 (220)
19 3eiq_A Eukaryotic initiation f 99.9 4.7E-25 1.6E-29 178.1 11.9 129 22-152 31-201 (414)
20 1s2m_A Putative ATP-dependent 99.9 8.7E-25 3E-29 176.2 10.2 123 28-152 18-181 (400)
21 3sqw_A ATP-dependent RNA helic 99.9 3.8E-25 1.3E-29 187.7 8.2 116 36-153 28-194 (579)
22 3i5x_A ATP-dependent RNA helic 99.9 5.1E-25 1.7E-29 185.6 8.0 116 36-153 79-245 (563)
23 3fht_A ATP-dependent RNA helic 99.9 8.9E-24 3E-28 170.3 12.3 124 27-152 21-187 (412)
24 3pey_A ATP-dependent RNA helic 99.9 5.9E-24 2E-28 170.1 11.1 121 29-151 3-163 (395)
25 3fmp_B ATP-dependent RNA helic 99.9 5.3E-24 1.8E-28 176.4 10.9 122 29-152 90-254 (479)
26 1fuu_A Yeast initiation factor 99.9 3.2E-24 1.1E-28 172.0 7.8 123 27-152 17-180 (394)
27 1xti_A Probable ATP-dependent 99.9 1.4E-23 4.8E-28 168.3 9.2 119 31-151 8-170 (391)
28 1hv8_A Putative ATP-dependent 99.9 3.1E-23 1.1E-27 164.3 10.5 120 30-152 5-165 (367)
29 2z0m_A 337AA long hypothetical 99.9 2.5E-22 8.4E-27 157.7 12.7 111 36-152 1-147 (337)
30 2va8_A SSO2462, SKI2-type heli 99.8 1.9E-20 6.7E-25 162.1 12.0 119 31-151 8-162 (715)
31 1oyw_A RECQ helicase, ATP-depe 99.8 2E-21 6.7E-26 163.7 5.1 115 31-150 2-155 (523)
32 2v1x_A ATP-dependent DNA helic 99.8 3.3E-20 1.1E-24 158.4 12.7 124 27-153 15-186 (591)
33 2zj8_A DNA helicase, putative 99.8 2.2E-20 7.5E-25 162.1 11.1 118 32-151 2-155 (720)
34 3oiy_A Reverse gyrase helicase 99.8 3.5E-21 1.2E-25 156.6 5.6 106 38-148 8-153 (414)
35 1tf5_A Preprotein translocase 99.8 7.9E-21 2.7E-25 166.2 8.0 102 46-152 79-222 (844)
36 2ykg_A Probable ATP-dependent 99.8 2.7E-20 9.1E-25 160.1 9.6 105 41-147 3-149 (696)
37 2p6r_A Afuhel308 helicase; pro 99.8 1.1E-20 3.6E-25 163.7 6.2 118 32-151 2-155 (702)
38 3fho_A ATP-dependent RNA helic 99.8 3.9E-21 1.3E-25 161.1 3.2 123 28-152 116-278 (508)
39 4a2p_A RIG-I, retinoic acid in 99.8 4.1E-20 1.4E-24 154.2 9.1 103 47-151 3-147 (556)
40 3l9o_A ATP-dependent RNA helic 99.8 1.9E-20 6.6E-25 169.2 6.0 119 32-152 163-308 (1108)
41 3tbk_A RIG-I helicase domain; 99.8 1.1E-19 3.7E-24 151.2 8.1 98 51-150 4-143 (555)
42 2fsf_A Preprotein translocase 99.8 5.3E-20 1.8E-24 160.9 5.3 100 47-151 71-212 (853)
43 3b6e_A Interferon-induced heli 99.8 1.6E-19 5.6E-24 133.9 6.3 109 42-152 24-180 (216)
44 4a2q_A RIG-I, retinoic acid in 99.8 4.1E-19 1.4E-23 155.7 9.6 104 45-150 242-387 (797)
45 4ddu_A Reverse gyrase; topoiso 99.8 2.2E-19 7.4E-24 162.4 7.6 110 40-154 67-227 (1104)
46 3llm_A ATP-dependent RNA helic 99.8 3.9E-19 1.3E-23 135.2 7.9 100 48-152 58-195 (235)
47 4f92_B U5 small nuclear ribonu 99.8 7.4E-19 2.5E-23 164.1 11.2 110 38-149 913-1061(1724)
48 1gku_B Reverse gyrase, TOP-RG; 99.8 2.4E-19 8.1E-24 161.5 6.7 101 38-148 44-189 (1054)
49 1nkt_A Preprotein translocase 99.8 2.8E-19 9.4E-24 156.9 6.8 105 41-150 101-248 (922)
50 4a2w_A RIG-I, retinoic acid in 99.7 3.6E-18 1.2E-22 152.3 7.2 103 46-150 243-387 (936)
51 2ipc_A Preprotein translocase 99.7 3.7E-18 1.3E-22 149.9 7.0 101 46-151 75-220 (997)
52 2xgj_A ATP-dependent RNA helic 99.7 9.9E-18 3.4E-22 150.5 9.8 105 44-151 80-209 (1010)
53 4f92_B U5 small nuclear ribonu 99.7 1.1E-17 3.6E-22 156.4 8.2 133 10-146 37-219 (1724)
54 4gl2_A Interferon-induced heli 99.7 1.5E-17 5E-22 143.2 8.4 99 51-151 7-153 (699)
55 4a4z_A Antiviral helicase SKI2 99.7 3.2E-17 1.1E-21 147.0 10.8 106 45-153 34-166 (997)
56 1gm5_A RECG; helicase, replica 99.7 2.1E-16 7.1E-21 138.6 10.6 101 38-146 356-502 (780)
57 1wp9_A ATP-dependent RNA helic 99.6 8.9E-16 3E-20 124.5 10.2 96 51-149 9-140 (494)
58 2jlq_A Serine protease subunit 99.6 9.8E-16 3.3E-20 126.7 4.5 95 48-146 1-122 (451)
59 2whx_A Serine protease/ntpase/ 99.5 1.4E-17 4.6E-22 143.0 -9.0 110 38-152 159-294 (618)
60 1rif_A DAR protein, DNA helica 99.5 9.7E-15 3.3E-19 113.4 7.2 95 51-150 113-241 (282)
61 2wv9_A Flavivirin protease NS2 99.5 3.5E-17 1.2E-21 141.6 -10.6 103 42-146 201-344 (673)
62 2eyq_A TRCF, transcription-rep 99.5 1E-13 3.5E-18 125.9 10.9 101 38-146 590-737 (1151)
63 3crv_A XPD/RAD3 related DNA he 99.5 7.3E-14 2.5E-18 118.1 9.0 41 48-89 1-45 (551)
64 2oca_A DAR protein, ATP-depend 99.5 5.3E-14 1.8E-18 117.0 8.1 96 49-149 111-240 (510)
65 2fwr_A DNA repair protein RAD2 99.5 1.4E-13 4.7E-18 113.5 9.8 107 38-152 62-210 (472)
66 2fz4_A DNA repair protein RAD2 99.5 2.1E-13 7E-18 104.0 9.5 94 51-152 93-210 (237)
67 2xau_A PRE-mRNA-splicing facto 99.4 1.7E-13 5.8E-18 120.2 8.2 116 28-149 69-224 (773)
68 3o8b_A HCV NS3 protease/helica 99.3 5.1E-14 1.7E-18 121.5 -1.1 91 53-152 219-335 (666)
69 2vl7_A XPD; helicase, unknown 99.3 8.5E-13 2.9E-17 111.4 6.1 42 47-89 4-49 (540)
70 1yks_A Genome polyprotein [con 99.3 2.3E-14 7.7E-19 118.3 -3.6 83 62-146 4-111 (440)
71 3h1t_A Type I site-specific re 99.3 9.8E-13 3.3E-17 111.5 5.0 96 51-149 178-317 (590)
72 2z83_A Helicase/nucleoside tri 99.3 1.3E-12 4.5E-17 108.2 4.3 89 61-152 16-135 (459)
73 2w00_A HSDR, R.ECOR124I; ATP-b 99.3 6E-12 2E-16 113.3 8.0 110 38-150 251-417 (1038)
74 2v6i_A RNA helicase; membrane, 99.1 5.1E-11 1.7E-15 97.9 5.9 79 65-146 1-105 (431)
75 3rc3_A ATP-dependent RNA helic 99.0 2.3E-11 7.9E-16 105.3 -0.9 105 38-152 131-257 (677)
76 1z63_A Helicase of the SNF2/RA 99.0 5.6E-10 1.9E-14 92.5 7.0 95 50-150 36-165 (500)
77 3dmq_A RNA polymerase-associat 98.7 1.1E-08 3.8E-13 91.6 5.9 98 51-150 153-289 (968)
78 4a15_A XPD helicase, ATP-depen 98.7 1.2E-08 4E-13 87.6 4.7 43 51-93 3-49 (620)
79 1w36_D RECD, exodeoxyribonucle 98.5 4.4E-08 1.5E-12 83.8 4.2 39 53-91 151-191 (608)
80 3mwy_W Chromo domain-containin 98.5 2.6E-07 8.9E-12 81.2 8.0 94 51-148 236-381 (800)
81 1z3i_X Similar to RAD54-like; 98.4 7E-07 2.4E-11 76.7 8.8 95 51-149 55-207 (644)
82 3jux_A Protein translocase sub 98.1 2.4E-06 8.4E-11 74.5 5.6 45 46-93 71-115 (822)
83 4b3f_X DNA-binding protein smu 97.9 9.9E-06 3.4E-10 69.5 4.4 33 51-83 189-222 (646)
84 3upu_A ATP-dependent DNA helic 97.8 1.1E-05 3.7E-10 66.6 4.2 48 44-92 18-70 (459)
85 3e1s_A Exodeoxyribonuclease V, 97.7 2.2E-05 7.5E-10 66.8 4.4 32 51-82 189-220 (574)
86 3ec2_A DNA replication protein 97.1 0.001 3.4E-08 47.4 5.8 31 53-83 16-55 (180)
87 3bos_A Putative DNA replicatio 97.0 0.00055 1.9E-08 50.2 4.1 68 65-148 51-118 (242)
88 3co5_A Putative two-component 96.7 0.00074 2.5E-08 46.7 2.4 20 63-82 24-43 (143)
89 2gk6_A Regulator of nonsense t 96.7 0.0027 9.2E-08 54.3 6.2 42 50-92 179-220 (624)
90 2qgz_A Helicase loader, putati 96.7 0.01 3.5E-07 46.3 9.1 66 66-146 152-226 (308)
91 3te6_A Regulatory protein SIR3 96.6 0.006 2E-07 48.2 7.5 19 65-83 44-62 (318)
92 2w58_A DNAI, primosome compone 96.5 0.011 3.8E-07 42.5 7.9 16 67-82 55-70 (202)
93 2p65_A Hypothetical protein PF 96.5 0.0028 9.5E-08 44.4 4.1 17 66-82 43-59 (187)
94 1jbk_A CLPB protein; beta barr 96.4 0.0046 1.6E-07 43.2 5.3 18 66-83 43-60 (195)
95 2xzl_A ATP-dependent helicase 96.4 0.0052 1.8E-07 54.2 6.3 34 50-83 359-392 (802)
96 2wjy_A Regulator of nonsense t 96.3 0.0061 2.1E-07 53.7 6.2 41 51-92 356-396 (800)
97 1d2n_A N-ethylmaleimide-sensit 96.1 0.0063 2.2E-07 46.1 4.8 17 67-83 65-81 (272)
98 1a5t_A Delta prime, HOLB; zinc 96.1 0.0075 2.6E-07 47.4 5.2 94 52-148 3-122 (334)
99 2v1u_A Cell division control p 96.0 0.0062 2.1E-07 47.7 4.3 19 65-83 43-61 (387)
100 1l8q_A Chromosomal replication 96.0 0.0078 2.7E-07 46.7 4.9 67 66-148 37-112 (324)
101 3syl_A Protein CBBX; photosynt 96.0 0.0094 3.2E-07 45.7 5.1 17 67-83 68-84 (309)
102 3cf0_A Transitional endoplasmi 95.9 0.012 4E-07 45.5 5.4 51 30-83 11-66 (301)
103 3eie_A Vacuolar protein sortin 95.8 0.053 1.8E-06 42.1 8.9 48 30-83 14-68 (322)
104 3lfu_A DNA helicase II; SF1 he 95.7 0.02 7E-07 48.4 6.7 41 50-92 8-48 (647)
105 3uk6_A RUVB-like 2; hexameric 95.7 0.0077 2.6E-07 47.3 3.8 18 66-83 70-87 (368)
106 2chg_A Replication factor C sm 95.7 0.05 1.7E-06 38.6 7.7 16 67-82 39-54 (226)
107 1ofh_A ATP-dependent HSL prote 95.6 0.12 3.9E-06 39.2 10.0 19 65-83 49-67 (310)
108 3pfi_A Holliday junction ATP-d 95.5 0.036 1.2E-06 43.0 7.1 59 67-147 56-119 (338)
109 1hqc_A RUVB; extended AAA-ATPa 95.4 0.026 8.9E-07 43.4 5.8 18 66-83 38-55 (324)
110 2z4s_A Chromosomal replication 95.3 0.027 9.2E-07 46.0 5.9 69 66-148 130-208 (440)
111 3t15_A Ribulose bisphosphate c 95.3 0.027 9.2E-07 43.4 5.5 16 67-82 37-52 (293)
112 2qby_A CDC6 homolog 1, cell di 95.0 0.021 7.3E-07 44.5 4.2 19 65-83 44-62 (386)
113 2zpa_A Uncharacterized protein 94.9 0.064 2.2E-06 46.4 7.2 74 51-142 175-264 (671)
114 3hws_A ATP-dependent CLP prote 94.8 0.073 2.5E-06 42.0 6.8 19 65-83 50-68 (363)
115 2orw_A Thymidine kinase; TMTK, 94.8 0.015 5.1E-07 41.9 2.5 20 65-84 2-21 (184)
116 1iqp_A RFCS; clamp loader, ext 94.8 0.12 4E-06 39.4 7.7 17 67-83 47-63 (327)
117 1fnn_A CDC6P, cell division co 94.2 0.055 1.9E-06 42.4 4.8 16 68-83 46-61 (389)
118 2zan_A Vacuolar protein sortin 94.2 0.049 1.7E-06 44.5 4.7 18 66-83 167-184 (444)
119 2qp9_X Vacuolar protein sortin 94.1 0.023 8E-07 45.0 2.4 17 67-83 85-101 (355)
120 3n70_A Transport activator; si 94.1 0.034 1.2E-06 38.1 3.0 20 64-83 22-41 (145)
121 2b8t_A Thymidine kinase; deoxy 93.9 0.045 1.5E-06 40.9 3.6 77 65-145 11-100 (223)
122 1uaa_A REP helicase, protein ( 93.9 0.11 3.7E-06 44.4 6.5 41 51-93 2-42 (673)
123 3u61_B DNA polymerase accessor 92.6 0.071 2.4E-06 41.1 3.0 14 132-147 105-118 (324)
124 1xwi_A SKD1 protein; VPS4B, AA 92.5 0.077 2.6E-06 41.4 3.0 48 30-83 8-62 (322)
125 1pjr_A PCRA; DNA repair, DNA r 92.4 0.12 3.9E-06 44.9 4.3 41 50-92 10-50 (724)
126 3h4m_A Proteasome-activating n 92.3 0.026 8.9E-07 42.7 0.1 49 31-82 14-67 (285)
127 3vkw_A Replicase large subunit 92.2 0.11 3.8E-06 42.8 3.8 16 68-83 163-178 (446)
128 3pvs_A Replication-associated 92.2 0.059 2E-06 44.2 2.2 17 67-83 51-67 (447)
129 2oap_1 GSPE-2, type II secreti 92.2 0.11 3.9E-06 43.4 3.9 39 42-82 237-276 (511)
130 3u4q_A ATP-dependent helicase/ 92.2 0.087 3E-06 48.4 3.4 41 51-93 10-50 (1232)
131 3m6a_A ATP-dependent protease 92.2 0.12 4.1E-06 43.4 4.0 19 65-83 107-125 (543)
132 1qvr_A CLPB protein; coiled co 92.1 0.19 6.6E-06 44.3 5.5 16 67-82 192-207 (854)
133 1xp8_A RECA protein, recombina 92.0 0.16 5.3E-06 40.7 4.4 85 59-147 61-165 (366)
134 4b4t_M 26S protease regulatory 92.0 0.029 1E-06 46.1 0.1 52 28-82 175-231 (434)
135 1u0j_A DNA replication protein 91.6 0.29 9.8E-06 37.6 5.2 44 38-84 73-122 (267)
136 3nbx_X ATPase RAVA; AAA+ ATPas 91.6 0.2 6.7E-06 41.8 4.6 44 38-82 14-57 (500)
137 2j9r_A Thymidine kinase; TK1, 91.3 0.26 8.9E-06 36.6 4.6 19 66-84 28-46 (214)
138 3b85_A Phosphate starvation-in 91.3 0.22 7.7E-06 36.5 4.2 35 49-83 5-39 (208)
139 2kjq_A DNAA-related protein; s 90.8 0.22 7.5E-06 34.4 3.6 18 65-82 35-52 (149)
140 3nwn_A Kinesin-like protein KI 90.7 0.16 5.3E-06 40.7 3.1 25 59-83 96-122 (359)
141 4b4t_J 26S protease regulatory 90.7 0.055 1.9E-06 44.1 0.4 48 29-82 143-198 (405)
142 2gza_A Type IV secretion syste 90.4 0.12 4.1E-06 41.1 2.2 21 62-82 171-191 (361)
143 2zr9_A Protein RECA, recombina 90.3 0.21 7.2E-06 39.6 3.5 78 66-147 61-152 (349)
144 2bjv_A PSP operon transcriptio 90.2 0.18 6.2E-06 37.7 2.9 18 65-82 28-45 (265)
145 1bg2_A Kinesin; motor protein, 90.2 0.19 6.4E-06 39.7 3.1 25 59-83 69-95 (325)
146 1kgd_A CASK, peripheral plasma 90.1 0.1 3.4E-06 37.0 1.4 20 64-83 3-22 (180)
147 3dc4_A Kinesin-like protein NO 89.8 0.18 6.1E-06 40.1 2.7 24 60-83 87-112 (344)
148 2dhr_A FTSH; AAA+ protein, hex 89.8 0.55 1.9E-05 39.1 5.8 17 67-83 65-81 (499)
149 1e9r_A Conjugal transfer prote 89.7 0.18 6.1E-06 40.7 2.7 27 65-92 52-78 (437)
150 2r44_A Uncharacterized protein 89.7 0.12 4E-06 40.0 1.6 25 58-82 38-62 (331)
151 4a14_A Kinesin, kinesin-like p 89.6 0.22 7.5E-06 39.5 3.1 25 59-83 75-101 (344)
152 2y65_A Kinesin, kinesin heavy 89.6 0.22 7.6E-06 39.9 3.1 24 60-83 77-102 (365)
153 2vvg_A Kinesin-2; motor protei 89.5 0.23 7.8E-06 39.6 3.1 24 60-83 82-107 (350)
154 3b6u_A Kinesin-like protein KI 89.5 0.23 7.8E-06 40.0 3.1 25 59-83 93-119 (372)
155 2h58_A Kinesin-like protein KI 89.4 0.23 8E-06 39.2 3.1 25 59-83 72-98 (330)
156 2x8a_A Nuclear valosin-contain 89.4 0.047 1.6E-06 41.8 -1.0 50 30-82 6-60 (274)
157 2zfi_A Kinesin-like protein KI 89.3 0.24 8.1E-06 39.7 3.1 25 59-83 81-107 (366)
158 3gbj_A KIF13B protein; kinesin 89.3 0.24 8.1E-06 39.5 3.1 25 59-83 84-110 (354)
159 2nr8_A Kinesin-like protein KI 89.3 0.24 8.2E-06 39.6 3.1 25 59-83 95-121 (358)
160 1goj_A Kinesin, kinesin heavy 89.3 0.23 7.8E-06 39.7 3.0 24 60-83 73-98 (355)
161 4etp_A Kinesin-like protein KA 89.3 0.24 8.1E-06 40.2 3.1 25 59-83 132-158 (403)
162 2pt7_A CAG-ALFA; ATPase, prote 89.2 0.15 5E-06 40.1 1.8 21 62-82 167-187 (330)
163 3lre_A Kinesin-like protein KI 89.2 0.23 7.9E-06 39.6 3.0 24 60-83 98-123 (355)
164 1x88_A Kinesin-like protein KI 89.2 0.23 7.9E-06 39.7 2.9 25 59-83 80-106 (359)
165 1t5c_A CENP-E protein, centrom 89.2 0.25 8.5E-06 39.4 3.1 25 59-83 69-95 (349)
166 3hr8_A Protein RECA; alpha and 89.1 0.33 1.1E-05 38.7 3.8 79 66-148 61-153 (356)
167 2gno_A DNA polymerase III, gam 89.0 0.74 2.5E-05 35.7 5.7 67 68-148 20-96 (305)
168 3cob_A Kinesin heavy chain-lik 89.0 0.21 7.2E-06 40.1 2.6 25 59-83 71-97 (369)
169 1v8k_A Kinesin-like protein KI 88.9 0.24 8.3E-06 40.3 2.9 24 60-83 147-172 (410)
170 3u06_A Protein claret segregat 88.9 0.23 7.8E-06 40.5 2.8 25 59-83 130-156 (412)
171 1qhx_A CPT, protein (chloramph 88.8 0.15 5.1E-06 35.5 1.4 18 65-82 2-19 (178)
172 3iij_A Coilin-interacting nucl 88.8 0.093 3.2E-06 36.8 0.3 20 64-83 9-28 (180)
173 4b4t_H 26S protease regulatory 88.8 0.078 2.7E-06 44.0 -0.1 51 29-82 204-259 (467)
174 2wbe_C Bipolar kinesin KRP-130 88.6 0.25 8.4E-06 39.7 2.8 24 60-83 93-118 (373)
175 3vaa_A Shikimate kinase, SK; s 88.5 0.17 5.8E-06 36.2 1.6 20 64-83 23-42 (199)
176 2heh_A KIF2C protein; kinesin, 88.4 0.28 9.4E-06 39.7 2.9 24 60-83 127-152 (387)
177 3vkg_A Dynein heavy chain, cyt 88.3 0.45 1.5E-05 47.8 4.8 48 36-84 873-924 (3245)
178 2eyu_A Twitching motility prot 88.3 0.14 4.8E-06 38.9 1.1 21 63-83 22-42 (261)
179 3t0q_A AGR253WP; kinesin, alph 88.2 0.21 7.2E-06 39.8 2.1 25 59-83 77-103 (349)
180 2qor_A Guanylate kinase; phosp 88.2 0.14 4.8E-06 36.9 0.9 21 62-82 8-28 (204)
181 4b4t_L 26S protease subunit RP 88.2 0.07 2.4E-06 43.9 -0.8 49 29-83 176-232 (437)
182 2j41_A Guanylate kinase; GMP, 88.2 0.17 5.7E-06 36.0 1.4 20 63-82 3-22 (207)
183 1lvg_A Guanylate kinase, GMP k 88.1 0.18 6.1E-06 36.3 1.5 19 65-83 3-21 (198)
184 1p9r_A General secretion pathw 88.1 0.13 4.4E-06 42.0 0.8 36 44-82 146-183 (418)
185 4b4t_K 26S protease regulatory 88.1 0.075 2.6E-06 43.5 -0.6 52 29-83 167-223 (428)
186 2owm_A Nckin3-434, related to 88.0 0.32 1.1E-05 40.0 3.1 24 60-83 129-154 (443)
187 2r6a_A DNAB helicase, replicat 88.0 1.6 5.6E-05 35.4 7.4 26 65-91 202-227 (454)
188 1w4r_A Thymidine kinase; type 88.0 0.34 1.1E-05 35.5 2.9 19 65-83 19-37 (195)
189 3b9p_A CG5977-PA, isoform A; A 88.0 0.18 6.2E-06 38.2 1.5 18 66-83 54-71 (297)
190 2qz4_A Paraplegin; AAA+, SPG7, 87.9 0.19 6.6E-06 37.1 1.6 17 66-82 39-55 (262)
191 3bfn_A Kinesin-like protein KI 87.9 0.26 8.8E-06 39.9 2.4 32 52-83 75-116 (388)
192 1kht_A Adenylate kinase; phosp 87.8 0.19 6.5E-06 35.2 1.5 18 65-82 2-19 (192)
193 3cmu_A Protein RECA, recombina 87.8 0.88 3E-05 44.0 6.3 85 60-148 1415-1519(2050)
194 3trf_A Shikimate kinase, SK; a 87.6 0.21 7.1E-06 35.0 1.5 18 66-83 5-22 (185)
195 3tau_A Guanylate kinase, GMP k 87.6 0.21 7.1E-06 36.2 1.6 19 65-83 7-25 (208)
196 4b4t_I 26S protease regulatory 87.4 0.068 2.3E-06 43.9 -1.2 51 29-82 177-232 (437)
197 1c4o_A DNA nucleotide excision 87.4 0.23 8E-06 42.7 2.0 36 48-84 6-46 (664)
198 3lw7_A Adenylate kinase relate 87.3 0.2 6.7E-06 34.3 1.3 15 68-82 3-17 (179)
199 3e2i_A Thymidine kinase; Zn-bi 87.2 0.14 4.8E-06 38.3 0.5 19 65-83 27-45 (219)
200 1ojl_A Transcriptional regulat 87.2 0.32 1.1E-05 37.6 2.5 18 65-82 24-41 (304)
201 1f9v_A Kinesin-like protein KA 87.2 0.24 8.1E-06 39.4 1.8 25 59-83 76-102 (347)
202 1zp6_A Hypothetical protein AT 86.9 0.19 6.4E-06 35.4 1.0 19 64-82 7-25 (191)
203 1y63_A LMAJ004144AAA protein; 86.7 0.25 8.6E-06 34.9 1.6 18 65-82 9-26 (184)
204 3tr0_A Guanylate kinase, GMP k 86.7 0.25 8.5E-06 35.1 1.6 18 65-82 6-23 (205)
205 2iut_A DNA translocase FTSK; n 86.5 0.34 1.2E-05 41.1 2.6 58 66-123 214-283 (574)
206 2rep_A Kinesin-like protein KI 86.5 0.31 1.1E-05 39.2 2.2 25 59-83 107-133 (376)
207 1ex7_A Guanylate kinase; subst 86.5 0.25 8.7E-06 35.7 1.5 16 67-82 2-17 (186)
208 1kag_A SKI, shikimate kinase I 86.4 0.28 9.5E-06 33.9 1.7 17 66-82 4-20 (173)
209 3jvv_A Twitching mobility prot 86.2 0.22 7.5E-06 39.7 1.1 20 64-83 121-140 (356)
210 3ney_A 55 kDa erythrocyte memb 86.2 0.26 8.7E-06 36.1 1.4 19 64-82 17-35 (197)
211 1lv7_A FTSH; alpha/beta domain 86.2 0.25 8.5E-06 36.7 1.4 18 66-83 45-62 (257)
212 3a8t_A Adenylate isopentenyltr 86.1 0.22 7.4E-06 39.6 1.0 18 66-83 40-57 (339)
213 1njg_A DNA polymerase III subu 86.0 0.53 1.8E-05 33.5 3.1 15 68-82 47-61 (250)
214 2ewv_A Twitching motility prot 85.9 0.22 7.7E-06 39.7 1.0 21 63-83 133-153 (372)
215 1ry6_A Internal kinesin; kines 85.7 0.43 1.5E-05 38.2 2.6 19 65-83 82-102 (360)
216 2ze6_A Isopentenyl transferase 85.7 0.26 8.9E-06 37.0 1.3 16 68-83 3-18 (253)
217 1u94_A RECA protein, recombina 85.6 0.63 2.2E-05 37.0 3.5 78 66-147 63-154 (356)
218 4akg_A Glutathione S-transfera 85.5 0.67 2.3E-05 46.0 4.3 48 36-84 890-941 (2695)
219 1z6g_A Guanylate kinase; struc 85.5 0.34 1.1E-05 35.4 1.8 20 63-82 20-39 (218)
220 1s96_A Guanylate kinase, GMP k 85.4 0.31 1.1E-05 35.9 1.6 22 62-83 12-33 (219)
221 4a15_A XPD helicase, ATP-depen 85.3 0.33 1.1E-05 41.4 1.9 48 99-149 166-219 (620)
222 3foz_A TRNA delta(2)-isopenten 85.2 0.27 9.4E-06 38.7 1.2 16 68-83 12-27 (316)
223 1ly1_A Polynucleotide kinase; 85.2 0.29 1E-05 33.8 1.3 15 68-82 4-18 (181)
224 4fcw_A Chaperone protein CLPB; 85.1 0.4 1.4E-05 36.3 2.1 17 67-83 48-64 (311)
225 1g8p_A Magnesium-chelatase 38 85.1 0.26 8.8E-06 38.0 1.0 18 66-83 45-62 (350)
226 1tue_A Replication protein E1; 85.1 0.54 1.9E-05 34.9 2.7 44 38-83 28-75 (212)
227 3kb2_A SPBC2 prophage-derived 85.0 0.31 1.1E-05 33.4 1.3 15 68-82 3-17 (173)
228 4gp7_A Metallophosphoesterase; 84.9 0.28 9.5E-06 34.4 1.0 20 65-84 8-27 (171)
229 1um8_A ATP-dependent CLP prote 84.8 0.37 1.3E-05 37.9 1.9 18 66-83 72-89 (376)
230 4eun_A Thermoresistant glucoki 84.8 0.37 1.2E-05 34.5 1.7 18 65-82 28-45 (200)
231 3exa_A TRNA delta(2)-isopenten 84.7 0.3 1E-05 38.5 1.2 18 66-83 3-20 (322)
232 2q6t_A DNAB replication FORK h 84.6 3.5 0.00012 33.3 7.7 26 66-92 200-225 (444)
233 2c9o_A RUVB-like 1; hexameric 84.6 0.34 1.2E-05 39.5 1.6 18 66-83 63-80 (456)
234 3cm0_A Adenylate kinase; ATP-b 84.4 0.24 8.3E-06 34.6 0.5 18 65-82 3-20 (186)
235 3a00_A Guanylate kinase, GMP k 84.4 0.39 1.3E-05 34.0 1.7 16 67-82 2-17 (186)
236 1znw_A Guanylate kinase, GMP k 84.3 0.38 1.3E-05 34.6 1.6 22 62-83 16-37 (207)
237 2d7d_A Uvrabc system protein B 84.3 0.089 3.1E-06 45.2 -2.1 21 38-58 170-190 (661)
238 1knq_A Gluconate kinase; ALFA/ 84.2 0.31 1.1E-05 33.8 1.0 19 65-83 7-25 (175)
239 4h1g_A Maltose binding protein 83.9 0.65 2.2E-05 40.2 3.1 25 59-83 454-480 (715)
240 1sxj_D Activator 1 41 kDa subu 83.8 0.56 1.9E-05 36.1 2.5 17 67-83 59-75 (353)
241 1m7g_A Adenylylsulfate kinase; 83.6 0.58 2E-05 33.7 2.4 31 52-83 12-42 (211)
242 2ehv_A Hypothetical protein PH 83.4 0.43 1.5E-05 34.8 1.6 21 64-84 28-48 (251)
243 3vfd_A Spastin; ATPase, microt 83.4 0.4 1.4E-05 38.1 1.5 18 66-83 148-165 (389)
244 2r62_A Cell division protease 83.4 0.22 7.6E-06 37.1 -0.0 18 66-83 44-61 (268)
245 1tev_A UMP-CMP kinase; ploop, 83.2 0.35 1.2E-05 33.8 1.0 18 66-83 3-20 (196)
246 2qmh_A HPR kinase/phosphorylas 83.1 0.43 1.5E-05 35.2 1.5 18 65-82 33-50 (205)
247 3d8b_A Fidgetin-like protein 1 83.1 0.42 1.5E-05 37.6 1.5 18 66-83 117-134 (357)
248 3lnc_A Guanylate kinase, GMP k 83.1 0.45 1.5E-05 34.7 1.6 20 64-83 25-44 (231)
249 1ixz_A ATP-dependent metallopr 83.0 0.4 1.4E-05 35.5 1.3 16 67-82 50-65 (254)
250 3nwj_A ATSK2; P loop, shikimat 82.8 0.57 1.9E-05 35.3 2.1 22 62-83 44-65 (250)
251 2c95_A Adenylate kinase 1; tra 82.6 0.51 1.7E-05 33.1 1.6 19 64-82 7-25 (196)
252 2w0m_A SSO2452; RECA, SSPF, un 82.5 0.49 1.7E-05 33.9 1.6 19 65-83 22-40 (235)
253 2v54_A DTMP kinase, thymidylat 82.3 0.52 1.8E-05 33.3 1.6 18 65-82 3-20 (204)
254 2orv_A Thymidine kinase; TP4A 82.2 0.94 3.2E-05 34.1 3.0 20 65-84 18-37 (234)
255 3crm_A TRNA delta(2)-isopenten 82.2 0.44 1.5E-05 37.5 1.3 17 67-83 6-22 (323)
256 3c8u_A Fructokinase; YP_612366 82.0 0.47 1.6E-05 34.1 1.3 18 65-82 21-38 (208)
257 3d3q_A TRNA delta(2)-isopenten 82.0 0.46 1.6E-05 37.7 1.3 16 68-83 9-24 (340)
258 2dr3_A UPF0273 protein PH0284; 81.8 0.85 2.9E-05 33.0 2.7 19 65-83 22-40 (247)
259 2zts_A Putative uncharacterize 81.8 0.93 3.2E-05 32.9 2.9 19 65-83 29-47 (251)
260 2rhm_A Putative kinase; P-loop 81.7 0.45 1.5E-05 33.3 1.1 17 66-82 5-21 (193)
261 2qby_B CDC6 homolog 3, cell di 81.5 0.56 1.9E-05 36.5 1.6 18 66-83 45-62 (384)
262 1gvn_B Zeta; postsegregational 81.3 0.56 1.9E-05 35.9 1.6 16 67-82 34-49 (287)
263 3io5_A Recombination and repai 81.3 2.3 7.7E-05 33.7 5.0 77 68-147 30-124 (333)
264 3uie_A Adenylyl-sulfate kinase 81.1 0.5 1.7E-05 33.7 1.2 31 52-83 12-42 (200)
265 2plr_A DTMP kinase, probable t 81.0 0.45 1.5E-05 33.7 0.9 18 65-82 3-20 (213)
266 3t61_A Gluconokinase; PSI-biol 80.8 0.56 1.9E-05 33.4 1.3 17 67-83 19-35 (202)
267 1nks_A Adenylate kinase; therm 80.7 0.55 1.9E-05 32.7 1.2 15 68-82 3-17 (194)
268 1aky_A Adenylate kinase; ATP:A 80.6 0.64 2.2E-05 33.6 1.6 18 65-82 3-20 (220)
269 3pxg_A Negative regulator of g 80.6 0.97 3.3E-05 37.0 2.8 18 66-83 201-218 (468)
270 4a1f_A DNAB helicase, replicat 80.4 5.2 0.00018 31.5 6.9 19 65-83 45-63 (338)
271 4ag6_A VIRB4 ATPase, type IV s 80.3 1.1 3.7E-05 35.5 3.0 19 65-83 34-52 (392)
272 2bdt_A BH3686; alpha-beta prot 80.1 0.42 1.4E-05 33.6 0.5 16 67-82 3-18 (189)
273 3tif_A Uncharacterized ABC tra 80.1 0.66 2.3E-05 34.4 1.6 18 65-82 30-47 (235)
274 2pez_A Bifunctional 3'-phospho 80.1 0.57 1.9E-05 32.7 1.1 18 65-82 4-21 (179)
275 3eph_A TRNA isopentenyltransfe 80.0 0.57 1.9E-05 38.1 1.2 15 69-83 5-19 (409)
276 1iy2_A ATP-dependent metallopr 79.9 0.6 2.1E-05 35.1 1.3 49 29-82 35-89 (278)
277 1zak_A Adenylate kinase; ATP:A 79.8 0.73 2.5E-05 33.3 1.7 17 66-82 5-21 (222)
278 1zd8_A GTP:AMP phosphotransfer 79.8 0.67 2.3E-05 33.7 1.5 18 65-82 6-23 (227)
279 1xx6_A Thymidine kinase; NESG, 79.7 1.7 5.8E-05 31.3 3.6 19 66-84 8-26 (191)
280 2bwj_A Adenylate kinase 5; pho 79.7 0.71 2.4E-05 32.4 1.5 18 65-82 11-28 (199)
281 3cmw_A Protein RECA, recombina 79.6 1.1 3.7E-05 42.7 3.1 26 59-84 1069-1100(1706)
282 3kta_A Chromosome segregation 79.6 0.66 2.2E-05 32.3 1.3 16 68-83 28-43 (182)
283 3k1j_A LON protease, ATP-depen 79.5 1.2 4.2E-05 37.6 3.2 23 61-83 55-77 (604)
284 2ius_A DNA translocase FTSK; n 79.4 1.1 3.6E-05 37.6 2.7 20 65-84 166-185 (512)
285 3kl4_A SRP54, signal recogniti 79.4 3.3 0.00011 33.8 5.6 17 67-83 98-114 (433)
286 3fb4_A Adenylate kinase; psych 79.4 0.66 2.3E-05 33.2 1.3 15 68-82 2-16 (216)
287 1zuh_A Shikimate kinase; alpha 79.2 0.71 2.4E-05 31.7 1.4 16 67-82 8-23 (168)
288 1in4_A RUVB, holliday junction 79.2 0.71 2.4E-05 35.9 1.5 17 67-83 52-68 (334)
289 3f9v_A Minichromosome maintena 79.1 0.69 2.4E-05 39.2 1.5 15 68-82 329-343 (595)
290 1ak2_A Adenylate kinase isoenz 78.9 0.71 2.4E-05 33.8 1.4 18 65-82 15-32 (233)
291 3asz_A Uridine kinase; cytidin 78.9 0.62 2.1E-05 33.3 1.1 18 65-82 5-22 (211)
292 3hu3_A Transitional endoplasmi 78.9 0.73 2.5E-05 38.2 1.6 18 66-83 238-255 (489)
293 2vli_A Antibiotic resistance p 78.8 0.76 2.6E-05 31.8 1.5 18 65-82 4-21 (183)
294 1via_A Shikimate kinase; struc 78.7 0.8 2.7E-05 31.7 1.6 16 67-82 5-20 (175)
295 1ye8_A Protein THEP1, hypothet 78.7 0.71 2.4E-05 32.8 1.3 16 68-83 2-17 (178)
296 2wwf_A Thymidilate kinase, put 78.7 0.79 2.7E-05 32.6 1.6 18 65-82 9-26 (212)
297 1qf9_A UMP/CMP kinase, protein 78.7 0.72 2.5E-05 32.1 1.3 16 67-82 7-22 (194)
298 2cvh_A DNA repair and recombin 78.7 0.83 2.9E-05 32.5 1.7 20 65-84 19-38 (220)
299 4akg_A Glutathione S-transfera 78.7 0.72 2.5E-05 45.7 1.7 21 62-82 1263-1283(2695)
300 1nn5_A Similar to deoxythymidy 78.6 0.82 2.8E-05 32.5 1.6 18 65-82 8-25 (215)
301 2iyv_A Shikimate kinase, SK; t 78.5 0.88 3E-05 31.7 1.7 16 67-82 3-18 (184)
302 3qf7_A RAD50; ABC-ATPase, ATPa 78.4 0.72 2.5E-05 36.6 1.4 16 68-83 25-40 (365)
303 3dl0_A Adenylate kinase; phosp 78.3 0.75 2.6E-05 33.0 1.3 15 68-82 2-16 (216)
304 2yvu_A Probable adenylyl-sulfa 78.3 0.68 2.3E-05 32.5 1.1 19 65-83 12-30 (186)
305 3cmu_A Protein RECA, recombina 78.2 2 6.9E-05 41.6 4.4 25 65-89 1080-1104(2050)
306 1e6c_A Shikimate kinase; phosp 78.2 0.78 2.7E-05 31.5 1.3 16 67-82 3-18 (173)
307 1f2t_A RAD50 ABC-ATPase; DNA d 78.1 0.8 2.7E-05 31.5 1.4 15 68-82 25-39 (149)
308 4a74_A DNA repair and recombin 78.1 0.67 2.3E-05 33.3 1.0 19 65-83 24-42 (231)
309 2cdn_A Adenylate kinase; phosp 78.0 0.88 3E-05 32.3 1.6 17 66-82 20-36 (201)
310 3pxi_A Negative regulator of g 77.8 1.4 4.9E-05 38.1 3.1 18 66-83 201-218 (758)
311 2jaq_A Deoxyguanosine kinase; 77.7 0.79 2.7E-05 32.2 1.3 15 68-82 2-16 (205)
312 2bbw_A Adenylate kinase 4, AK4 77.7 0.89 3E-05 33.5 1.6 18 65-82 26-43 (246)
313 1n0w_A DNA repair protein RAD5 77.4 0.99 3.4E-05 32.7 1.8 20 65-84 23-42 (243)
314 1cke_A CK, MSSA, protein (cyti 77.4 0.82 2.8E-05 32.9 1.3 16 67-82 6-21 (227)
315 2cbz_A Multidrug resistance-as 77.4 0.9 3.1E-05 33.8 1.6 18 65-82 30-47 (237)
316 1sxj_E Activator 1 40 kDa subu 77.3 1 3.4E-05 34.8 1.9 40 32-83 12-53 (354)
317 1ukz_A Uridylate kinase; trans 77.2 0.84 2.9E-05 32.3 1.3 17 67-83 16-32 (203)
318 2r2a_A Uncharacterized protein 77.0 0.91 3.1E-05 33.0 1.5 16 68-83 7-22 (199)
319 1c4o_A DNA nucleotide excision 76.9 0.22 7.6E-06 42.8 -2.2 25 114-147 314-338 (664)
320 1sxj_A Activator 1 95 kDa subu 76.7 0.89 3E-05 37.7 1.5 17 67-83 78-94 (516)
321 2if2_A Dephospho-COA kinase; a 76.7 0.88 3E-05 32.3 1.3 15 68-82 3-17 (204)
322 2pcj_A ABC transporter, lipopr 76.5 0.97 3.3E-05 33.2 1.5 18 65-82 29-46 (224)
323 3be4_A Adenylate kinase; malar 76.4 0.98 3.3E-05 32.6 1.5 17 66-82 5-21 (217)
324 1sgw_A Putative ABC transporte 76.2 1.1 3.8E-05 32.9 1.7 18 65-82 34-51 (214)
325 2pze_A Cystic fibrosis transme 76.2 1 3.5E-05 33.2 1.6 18 65-82 33-50 (229)
326 2qt1_A Nicotinamide riboside k 76.1 0.86 2.9E-05 32.5 1.1 19 64-82 19-37 (207)
327 2pbr_A DTMP kinase, thymidylat 76.0 0.93 3.2E-05 31.6 1.3 14 69-82 3-16 (195)
328 1g41_A Heat shock protein HSLU 76.0 1.1 3.8E-05 36.8 1.8 17 66-82 50-66 (444)
329 2chq_A Replication factor C sm 76.0 1.1 3.9E-05 33.6 1.8 39 32-83 15-55 (319)
330 3vkg_A Dynein heavy chain, cyt 75.9 0.99 3.4E-05 45.5 1.8 21 62-82 1300-1320(3245)
331 2v9p_A Replication protein E1; 75.9 1 3.5E-05 35.1 1.5 19 64-82 124-142 (305)
332 2z0h_A DTMP kinase, thymidylat 75.9 0.95 3.2E-05 31.7 1.3 14 69-82 3-16 (197)
333 2i3b_A HCR-ntpase, human cance 75.9 1.1 3.8E-05 32.2 1.6 18 66-83 1-18 (189)
334 3a4m_A L-seryl-tRNA(SEC) kinas 75.8 0.94 3.2E-05 33.9 1.3 17 66-82 4-20 (260)
335 1jjv_A Dephospho-COA kinase; P 75.8 0.97 3.3E-05 32.2 1.3 15 68-82 4-18 (206)
336 2pt5_A Shikimate kinase, SK; a 75.8 0.98 3.4E-05 30.8 1.3 15 68-82 2-16 (168)
337 1sxj_C Activator 1 40 kDa subu 75.7 1.4 4.7E-05 34.1 2.3 16 68-83 48-63 (340)
338 2px0_A Flagellar biosynthesis 75.6 1 3.6E-05 34.7 1.5 18 66-83 105-122 (296)
339 1g6h_A High-affinity branched- 75.6 1.1 3.7E-05 33.7 1.6 18 65-82 32-49 (257)
340 2ghi_A Transport protein; mult 75.2 1.1 3.8E-05 33.8 1.6 19 65-83 45-63 (260)
341 1rj9_A FTSY, signal recognitio 74.8 1.1 3.8E-05 34.7 1.5 18 66-83 102-119 (304)
342 2p5t_B PEZT; postsegregational 74.8 0.77 2.6E-05 34.2 0.6 17 66-82 32-48 (253)
343 2ff7_A Alpha-hemolysin translo 74.7 1.2 4E-05 33.4 1.6 18 65-82 34-51 (247)
344 2ce7_A Cell division protein F 74.7 1 3.6E-05 37.2 1.4 17 67-83 50-66 (476)
345 3auy_A DNA double-strand break 74.6 1 3.6E-05 35.5 1.3 15 68-82 27-41 (371)
346 3gfo_A Cobalt import ATP-bindi 74.4 1.2 4E-05 34.1 1.5 18 65-82 33-50 (275)
347 1e4v_A Adenylate kinase; trans 74.4 1.1 3.7E-05 32.3 1.3 15 68-82 2-16 (214)
348 1ji0_A ABC transporter; ATP bi 74.4 1.2 4.1E-05 33.1 1.6 18 65-82 31-48 (240)
349 1nlf_A Regulatory protein REPA 74.3 1.3 4.4E-05 33.3 1.8 22 63-84 27-48 (279)
350 1mv5_A LMRA, multidrug resista 74.2 0.99 3.4E-05 33.6 1.0 18 65-82 27-44 (243)
351 4g1u_C Hemin import ATP-bindin 74.1 1.2 4.1E-05 33.7 1.5 18 65-82 36-53 (266)
352 4e22_A Cytidylate kinase; P-lo 74.0 1.3 4.3E-05 33.0 1.6 19 65-83 26-44 (252)
353 1b0u_A Histidine permease; ABC 73.9 1.2 4.3E-05 33.5 1.6 18 65-82 31-48 (262)
354 1uf9_A TT1252 protein; P-loop, 73.6 1.2 4E-05 31.3 1.3 16 68-83 10-25 (203)
355 2qi9_C Vitamin B12 import ATP- 73.4 1.3 4.5E-05 33.2 1.6 19 65-83 25-43 (249)
356 1r6b_X CLPA protein; AAA+, N-t 73.3 1.3 4.3E-05 38.4 1.6 18 66-83 207-224 (758)
357 2yz2_A Putative ABC transporte 73.2 1.3 4.5E-05 33.4 1.6 18 65-82 32-49 (266)
358 2d2e_A SUFC protein; ABC-ATPas 73.2 1.3 4.6E-05 33.0 1.6 19 65-83 28-46 (250)
359 2xb4_A Adenylate kinase; ATP-b 73.0 1.2 4.1E-05 32.4 1.3 15 68-82 2-16 (223)
360 1vpl_A ABC transporter, ATP-bi 73.0 1.4 4.7E-05 33.3 1.6 18 65-82 40-57 (256)
361 2nq2_C Hypothetical ABC transp 72.8 1.4 4.8E-05 33.1 1.6 18 65-82 30-47 (253)
362 3tlx_A Adenylate kinase 2; str 72.7 1.2 4.3E-05 32.9 1.3 18 65-82 28-45 (243)
363 1rz3_A Hypothetical protein rb 72.7 1.3 4.5E-05 31.6 1.3 18 66-83 22-39 (201)
364 2ixe_A Antigen peptide transpo 72.6 1.4 4.8E-05 33.5 1.6 19 64-82 43-61 (271)
365 2olj_A Amino acid ABC transpor 72.6 1.4 4.8E-05 33.4 1.6 18 65-82 49-66 (263)
366 1cr0_A DNA primase/helicase; R 72.6 1.5 5.3E-05 33.1 1.8 20 64-83 33-52 (296)
367 1gtv_A TMK, thymidylate kinase 72.6 0.65 2.2E-05 33.1 -0.3 14 69-82 3-16 (214)
368 2zu0_C Probable ATP-dependent 72.5 1.4 4.8E-05 33.3 1.6 19 65-83 45-63 (267)
369 3b9q_A Chloroplast SRP recepto 72.5 1.1 3.9E-05 34.5 1.1 18 66-83 100-117 (302)
370 1vht_A Dephospho-COA kinase; s 72.4 1.3 4.5E-05 31.8 1.3 16 67-82 5-20 (218)
371 3cf2_A TER ATPase, transitiona 72.3 0.84 2.9E-05 40.3 0.3 52 28-82 471-527 (806)
372 3sr0_A Adenylate kinase; phosp 72.3 1.3 4.5E-05 32.2 1.3 15 68-82 2-16 (206)
373 3qks_A DNA double-strand break 72.3 1.4 4.6E-05 31.8 1.4 16 68-83 25-40 (203)
374 3cpe_A Terminase, DNA packagin 72.3 4.5 0.00015 34.0 4.8 43 51-93 163-205 (592)
375 1ypw_A Transitional endoplasmi 72.2 1.2 4.1E-05 39.1 1.2 18 65-82 237-254 (806)
376 2ihy_A ABC transporter, ATP-bi 72.1 1.5 5E-05 33.6 1.6 18 65-82 46-63 (279)
377 1jr3_A DNA polymerase III subu 71.6 1.4 4.7E-05 34.1 1.3 16 68-83 40-55 (373)
378 2qen_A Walker-type ATPase; unk 71.3 2.3 7.7E-05 32.3 2.5 17 66-82 31-47 (350)
379 3tqf_A HPR(Ser) kinase; transf 71.0 1.5 5.1E-05 31.7 1.3 19 65-83 15-33 (181)
380 1sxj_B Activator 1 37 kDa subu 71.0 1.8 6.1E-05 32.6 1.8 16 67-82 43-58 (323)
381 2r8r_A Sensor protein; KDPD, P 70.7 4.7 0.00016 30.1 4.0 20 65-84 4-24 (228)
382 2fna_A Conserved hypothetical 70.6 4.4 0.00015 30.6 4.1 16 67-82 31-46 (357)
383 3umf_A Adenylate kinase; rossm 70.6 1.5 5.2E-05 32.3 1.3 16 67-82 30-45 (217)
384 1ltq_A Polynucleotide kinase; 70.5 1.5 5.1E-05 33.1 1.3 16 68-83 4-19 (301)
385 1xjc_A MOBB protein homolog; s 70.4 1.6 5.3E-05 31.0 1.3 15 68-82 6-20 (169)
386 3pxi_A Negative regulator of g 70.3 2.7 9.1E-05 36.4 3.0 16 68-83 523-538 (758)
387 1htw_A HI0065; nucleotide-bind 70.2 1.5 5E-05 30.6 1.1 19 64-82 31-49 (158)
388 2vp4_A Deoxynucleoside kinase; 70.1 1.4 4.8E-05 32.2 1.1 18 65-82 19-36 (230)
389 1odf_A YGR205W, hypothetical 3 69.8 1.6 5.3E-05 33.6 1.3 16 68-83 33-48 (290)
390 1np6_A Molybdopterin-guanine d 69.8 1.6 5.5E-05 30.9 1.3 15 68-82 8-22 (174)
391 3sop_A Neuronal-specific septi 69.5 1.5 5.3E-05 33.2 1.2 15 68-82 4-18 (270)
392 1r6b_X CLPA protein; AAA+, N-t 69.5 2.8 9.7E-05 36.1 3.0 16 68-83 490-505 (758)
393 1svm_A Large T antigen; AAA+ f 69.1 1.8 6.3E-05 34.6 1.6 18 65-82 168-185 (377)
394 3qkt_A DNA double-strand break 69.1 1.7 5.8E-05 33.8 1.4 15 69-83 26-40 (339)
395 3nh6_A ATP-binding cassette SU 68.9 1.2 4.1E-05 34.6 0.4 18 65-82 79-96 (306)
396 2grj_A Dephospho-COA kinase; T 68.8 1.8 6.1E-05 31.1 1.3 15 68-82 14-28 (192)
397 1qvr_A CLPB protein; coiled co 68.8 1.9 6.5E-05 38.0 1.7 16 68-83 590-605 (854)
398 2onk_A Molybdate/tungstate ABC 68.8 1.7 5.9E-05 32.3 1.3 16 67-82 25-40 (240)
399 2bbs_A Cystic fibrosis transme 68.7 1.9 6.4E-05 33.2 1.5 18 65-82 63-80 (290)
400 2jeo_A Uridine-cytidine kinase 68.3 1.8 6.3E-05 31.8 1.4 19 65-83 24-42 (245)
401 4tmk_A Protein (thymidylate ki 68.2 2 6.9E-05 31.4 1.6 20 64-83 1-20 (213)
402 4eaq_A DTMP kinase, thymidylat 68.2 1.6 5.6E-05 32.0 1.1 18 65-82 25-42 (229)
403 2pjz_A Hypothetical protein ST 67.7 1.9 6.6E-05 32.6 1.4 18 66-83 30-47 (263)
404 3aez_A Pantothenate kinase; tr 67.4 1.7 5.9E-05 33.7 1.1 18 66-83 90-107 (312)
405 1pui_A ENGB, probable GTP-bind 67.3 1.7 5.9E-05 30.5 1.0 18 65-82 25-42 (210)
406 2h92_A Cytidylate kinase; ross 67.3 2.3 8E-05 30.3 1.7 18 66-83 3-20 (219)
407 1uj2_A Uridine-cytidine kinase 67.1 2 6.8E-05 31.8 1.3 16 68-83 24-39 (252)
408 2f6r_A COA synthase, bifunctio 67.1 1.9 6.6E-05 32.7 1.3 15 68-82 77-91 (281)
409 1w5s_A Origin recognition comp 66.8 2.5 8.4E-05 33.0 1.9 18 66-83 50-69 (412)
410 2z43_A DNA repair and recombin 66.7 3 0.0001 32.2 2.4 19 66-84 107-125 (324)
411 1a7j_A Phosphoribulokinase; tr 66.7 2 6.9E-05 32.9 1.3 16 68-83 7-22 (290)
412 3bh0_A DNAB-like replicative h 66.4 3.6 0.00012 31.6 2.8 43 38-82 35-84 (315)
413 1q3t_A Cytidylate kinase; nucl 66.3 2.5 8.6E-05 30.8 1.7 19 65-83 15-33 (236)
414 2og2_A Putative signal recogni 66.2 1.8 6.2E-05 34.4 1.0 18 66-83 157-174 (359)
415 3ake_A Cytidylate kinase; CMP 66.1 2.2 7.4E-05 30.0 1.3 15 68-82 4-18 (208)
416 2o0j_A Terminase, DNA packagin 66.0 7.8 0.00027 31.0 4.7 42 51-92 163-204 (385)
417 1e69_A Chromosome segregation 65.9 2.4 8.2E-05 32.7 1.6 16 68-83 26-41 (322)
418 2f1r_A Molybdopterin-guanine d 65.8 1.1 3.8E-05 31.7 -0.3 16 68-83 4-19 (171)
419 4edh_A DTMP kinase, thymidylat 65.4 2 7E-05 31.3 1.1 20 64-83 4-23 (213)
420 3e70_C DPA, signal recognition 65.3 2 6.8E-05 33.7 1.0 17 66-82 129-145 (328)
421 4a82_A Cystic fibrosis transme 65.2 2.4 8E-05 35.7 1.6 19 64-82 365-383 (578)
422 1vma_A Cell division protein F 65.1 2.1 7.1E-05 33.2 1.1 16 68-83 106-121 (306)
423 3fvq_A Fe(3+) IONS import ATP- 64.5 2.5 8.6E-05 33.6 1.5 18 65-82 29-46 (359)
424 3tqc_A Pantothenate kinase; bi 64.5 4.4 0.00015 31.6 2.9 16 68-83 94-109 (321)
425 2dyk_A GTP-binding protein; GT 64.5 2.4 8.2E-05 28.1 1.2 15 68-82 3-17 (161)
426 3qf4_B Uncharacterized ABC tra 64.4 2.8 9.6E-05 35.4 1.9 19 64-82 379-397 (598)
427 3cf2_A TER ATPase, transitiona 64.3 2.3 7.8E-05 37.6 1.3 16 67-82 239-254 (806)
428 1tf7_A KAIC; homohexamer, hexa 64.0 4.5 0.00015 33.4 3.0 29 64-92 37-65 (525)
429 1z47_A CYSA, putative ABC-tran 63.9 2.7 9.1E-05 33.4 1.6 18 65-82 40-57 (355)
430 1c9k_A COBU, adenosylcobinamid 63.8 2.5 8.4E-05 30.4 1.2 14 69-82 2-15 (180)
431 2yl4_A ATP-binding cassette SU 63.7 3 0.0001 35.1 1.9 18 65-82 369-386 (595)
432 1zd9_A ADP-ribosylation factor 63.5 1.7 5.8E-05 30.2 0.3 32 51-82 6-38 (188)
433 2ce2_X GTPase HRAS; signaling 63.4 2.5 8.4E-05 28.0 1.1 15 68-82 5-19 (166)
434 3b60_A Lipid A export ATP-bind 63.3 2.7 9.1E-05 35.3 1.5 18 65-82 368-385 (582)
435 2yyz_A Sugar ABC transporter, 63.3 2.8 9.5E-05 33.3 1.6 18 65-82 28-45 (359)
436 2it1_A 362AA long hypothetical 63.2 2.8 9.5E-05 33.4 1.6 18 65-82 28-45 (362)
437 3zvl_A Bifunctional polynucleo 63.0 2.6 8.8E-05 33.9 1.4 17 67-83 259-275 (416)
438 3lv8_A DTMP kinase, thymidylat 62.9 2.9 9.9E-05 31.1 1.5 19 64-82 25-43 (236)
439 3b5x_A Lipid A export ATP-bind 62.7 2.8 9.5E-05 35.2 1.6 19 64-82 367-385 (582)
440 2i1q_A DNA repair and recombin 62.7 2.5 8.6E-05 32.4 1.2 18 67-84 99-116 (322)
441 1nij_A Hypothetical protein YJ 62.7 2.9 9.9E-05 32.3 1.5 14 69-82 7-20 (318)
442 2h17_A ADP-ribosylation factor 62.6 2.3 7.8E-05 29.2 0.9 27 56-82 11-37 (181)
443 1g8x_A Myosin II heavy chain f 62.6 5.3 0.00018 36.1 3.4 28 55-82 158-188 (1010)
444 1z2a_A RAS-related protein RAB 62.5 2.7 9.4E-05 28.0 1.2 15 68-82 7-21 (168)
445 2ged_A SR-beta, signal recogni 62.3 2.7 9.4E-05 29.0 1.2 16 67-82 49-64 (193)
446 2vhj_A Ntpase P4, P4; non- hyd 62.2 2.4 8.1E-05 33.5 1.0 19 65-83 122-140 (331)
447 3tmk_A Thymidylate kinase; pho 62.2 3.1 0.00011 30.5 1.6 18 65-82 4-21 (216)
448 2npi_A Protein CLP1; CLP1-PCF1 62.1 3.2 0.00011 34.1 1.8 19 64-82 136-154 (460)
449 3rlf_A Maltose/maltodextrin im 62.0 3 0.0001 33.5 1.6 18 65-82 28-45 (381)
450 1g29_1 MALK, maltose transport 61.9 3 0.0001 33.2 1.6 18 65-82 28-45 (372)
451 1ek0_A Protein (GTP-binding pr 61.9 2.7 9.4E-05 28.0 1.2 15 68-82 5-19 (170)
452 1sq5_A Pantothenate kinase; P- 61.8 2.5 8.7E-05 32.4 1.1 18 66-83 80-97 (308)
453 1z0j_A RAB-22, RAS-related pro 61.6 2.8 9.6E-05 28.0 1.2 15 68-82 8-22 (170)
454 1v43_A Sugar-binding transport 61.4 3.1 0.00011 33.2 1.6 18 65-82 36-53 (372)
455 3gd7_A Fusion complex of cysti 61.4 3.1 0.00011 33.4 1.5 19 64-82 45-63 (390)
456 3r20_A Cytidylate kinase; stru 61.3 3 0.0001 31.1 1.3 18 66-83 9-26 (233)
457 2f9l_A RAB11B, member RAS onco 61.2 3 0.0001 29.2 1.3 15 68-82 7-21 (199)
458 3v9p_A DTMP kinase, thymidylat 61.1 2.9 0.0001 30.9 1.3 21 63-83 22-42 (227)
459 1g16_A RAS-related protein SEC 60.9 2.9 9.9E-05 27.9 1.1 15 68-82 5-19 (170)
460 1ky3_A GTP-binding protein YPT 60.8 3 0.0001 28.1 1.2 16 67-82 9-24 (182)
461 1oix_A RAS-related protein RAB 60.7 3 0.0001 29.1 1.3 15 68-82 31-45 (191)
462 1z06_A RAS-related protein RAB 60.6 2.3 7.7E-05 29.4 0.5 16 67-82 21-36 (189)
463 3qf4_A ABC transporter, ATP-bi 60.6 3.2 0.00011 34.9 1.6 18 65-82 368-385 (587)
464 2h57_A ADP-ribosylation factor 60.6 2.5 8.5E-05 29.2 0.8 16 67-82 22-37 (190)
465 1kao_A RAP2A; GTP-binding prot 60.5 3 0.0001 27.6 1.2 15 68-82 5-19 (167)
466 1knx_A Probable HPR(Ser) kinas 60.5 3 0.0001 32.6 1.3 18 65-82 146-163 (312)
467 1u8z_A RAS-related protein RAL 60.4 3 0.0001 27.6 1.2 16 67-82 5-20 (168)
468 2ocp_A DGK, deoxyguanosine kin 60.4 2.8 9.6E-05 30.6 1.1 17 66-82 2-18 (241)
469 1v5w_A DMC1, meiotic recombina 60.2 4 0.00014 31.9 1.9 25 60-84 111-140 (343)
470 1lkx_A Myosin IE heavy chain; 59.7 4.3 0.00015 35.2 2.2 50 33-82 51-110 (697)
471 1p5z_B DCK, deoxycytidine kina 59.5 3 0.0001 30.9 1.1 18 65-82 23-40 (263)
472 1svi_A GTP-binding protein YSX 59.4 3.4 0.00011 28.5 1.3 16 67-82 24-39 (195)
473 1wms_A RAB-9, RAB9, RAS-relate 59.4 3.2 0.00011 28.0 1.2 15 68-82 9-23 (177)
474 3pqc_A Probable GTP-binding pr 59.0 3.5 0.00012 28.3 1.3 16 67-82 24-39 (195)
475 1nrj_B SR-beta, signal recogni 58.8 3.4 0.00012 29.2 1.3 16 67-82 13-28 (218)
476 1c1y_A RAS-related protein RAP 58.7 3.4 0.00011 27.5 1.2 15 68-82 5-19 (167)
477 2erx_A GTP-binding protein DI- 58.2 3.6 0.00012 27.4 1.2 15 68-82 5-19 (172)
478 3d31_A Sulfate/molybdate ABC t 57.9 2.5 8.5E-05 33.4 0.4 18 65-82 25-42 (348)
479 2yv5_A YJEQ protein; hydrolase 57.6 6 0.00021 30.3 2.6 26 57-82 156-181 (302)
480 3tui_C Methionine import ATP-b 57.6 4 0.00014 32.6 1.6 19 64-82 52-70 (366)
481 3cmw_A Protein RECA, recombina 57.4 5.2 0.00018 38.2 2.5 88 59-149 1418-1524(1706)
482 2yhs_A FTSY, cell division pro 57.2 3.3 0.00011 34.5 1.0 17 67-83 294-310 (503)
483 1w7j_A Myosin VA; motor protei 57.0 7.4 0.00025 34.3 3.2 16 67-82 157-172 (795)
484 1w9i_A Myosin II heavy chain; 57.0 5.6 0.00019 34.9 2.5 28 55-82 158-188 (770)
485 2v3c_C SRP54, signal recogniti 56.8 5.5 0.00019 32.3 2.3 17 67-83 100-116 (432)
486 1kk8_A Myosin heavy chain, str 56.7 5.6 0.00019 35.2 2.5 29 55-83 155-186 (837)
487 3q72_A GTP-binding protein RAD 56.7 3.9 0.00013 27.2 1.2 15 68-82 4-18 (166)
488 3q85_A GTP-binding protein REM 56.6 4 0.00014 27.2 1.3 15 68-82 4-18 (169)
489 2y8e_A RAB-protein 6, GH09086P 56.5 3.9 0.00013 27.5 1.2 16 67-82 15-30 (179)
490 3tw8_B RAS-related protein RAB 56.4 3.8 0.00013 27.6 1.1 15 68-82 11-25 (181)
491 1ypw_A Transitional endoplasmi 56.4 2.3 7.9E-05 37.3 -0.0 18 65-82 510-527 (806)
492 3lda_A DNA repair protein RAD5 56.3 4.2 0.00014 32.8 1.5 19 66-84 178-196 (400)
493 3con_A GTPase NRAS; structural 56.2 2.5 8.4E-05 29.2 0.1 16 67-82 22-37 (190)
494 2ycu_A Non muscle myosin 2C, a 56.2 5.9 0.0002 35.8 2.5 29 55-83 132-163 (995)
495 2lkc_A Translation initiation 56.1 4.7 0.00016 27.2 1.6 17 66-82 8-24 (178)
496 2rcn_A Probable GTPase ENGC; Y 56.1 6.8 0.00023 31.1 2.7 43 40-82 184-231 (358)
497 1r2q_A RAS-related protein RAB 56.1 4.1 0.00014 27.0 1.2 15 68-82 8-22 (170)
498 1z08_A RAS-related protein RAB 56.1 4.1 0.00014 27.2 1.2 15 68-82 8-22 (170)
499 4db1_A Myosin-7; S1DC, cardiac 56.1 5.8 0.0002 34.9 2.4 29 55-83 157-188 (783)
500 2wji_A Ferrous iron transport 56.0 4.2 0.00014 27.5 1.3 15 68-82 5-19 (165)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=5.2e-34 Score=234.98 Aligned_cols=149 Identities=29% Similarity=0.514 Sum_probs=134.2
Q ss_pred CCcccCccccccCCcCcccCCCCCCCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcc
Q 031654 3 ASWAADSVFASENAAPASSSTNTLSSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKT 80 (155)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT 80 (155)
....++.+|+.++++++.+.|.+.|.++.+|++++ +.++++|+++||.+|||+|+++||.+++|+|++++||||||||
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT 107 (434)
T 2db3_A 28 SGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKT 107 (434)
T ss_dssp CCCCCCTTGGGGGGSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHH
T ss_pred cCcccccChhhhcCceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCch
Confidence 34566788999999999999999999999999987 9999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHhhhc-------h-------------------------------------HHHHHHHhcCCcEEEECh
Q 031654 81 TPFCFPIINGIMREYYS-------A-------------------------------------RKELRELARWVDNLMATL 116 (155)
Q Consensus 81 ~~yllp~l~~l~~~~~~-------~-------------------------------------~~~~~~l~~~~~IlI~TP 116 (155)
++|++|+++++...... . ..+...+..+++|+|+||
T Consensus 108 ~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp 187 (434)
T 2db3_A 108 AAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATP 187 (434)
T ss_dssp HHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECH
T ss_pred HHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEECh
Confidence 99999999998764321 1 345566667899999999
Q ss_pred HHHHHHHHcCCCCcccccceEEEEccccccccccccc
Q 031654 117 RRLVNLLERGRVSLQMIIRYLALKEAADQTLDMALNQ 153 (155)
Q Consensus 117 ~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf~~ 153 (155)
++|.+++.++.+.++++ +++|+||| |+|+++||.+
T Consensus 188 ~~l~~~l~~~~~~l~~~-~~lVlDEa-h~~~~~gf~~ 222 (434)
T 2db3_A 188 GRLLDFVDRTFITFEDT-RFVVLDEA-DRMLDMGFSE 222 (434)
T ss_dssp HHHHHHHHTTSCCCTTC-CEEEEETH-HHHTSTTTHH
T ss_pred HHHHHHHHhCCcccccC-CeEEEccH-hhhhccCcHH
Confidence 99999999999999999 99999999 9999999875
No 2
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.97 E-value=1.1e-31 Score=205.26 Aligned_cols=136 Identities=28% Similarity=0.426 Sum_probs=119.8
Q ss_pred CcCcccCCCCCCCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHH
Q 031654 16 AAPASSSTNTLSSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMR 93 (155)
Q Consensus 16 ~~~~~~~~~~~p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~ 93 (155)
+..+.+.|.+.|.++.+|++++ +.+++++.++||..|+++|.++|+.+++|+|++++||||||||++|++|++.++..
T Consensus 14 ~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~ 93 (242)
T 3fe2_A 14 SKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH 93 (242)
T ss_dssp HHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred cCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHh
Confidence 3466778889999999999987 99999999999999999999999999999999999999999999999999998874
Q ss_pred hh-------hch-------------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCC
Q 031654 94 EY-------YSA-------------------------------------RKELRELARWVDNLMATLRRLVNLLERGRVS 129 (155)
Q Consensus 94 ~~-------~~~-------------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~ 129 (155)
.. ... ..+...+..+++|+|+||++|.+++.++...
T Consensus 94 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~ 173 (242)
T 3fe2_A 94 QPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTN 173 (242)
T ss_dssp SCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCC
T ss_pred ccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCC
Confidence 32 001 3444556667999999999999999999899
Q ss_pred cccccceEEEEccccccccccccc
Q 031654 130 LQMIIRYLALKEAADQTLDMALNQ 153 (155)
Q Consensus 130 l~~l~~~lVlDEa~D~ll~~gf~~ 153 (155)
++++ +++|+||| |+|+++||.+
T Consensus 174 ~~~~-~~lViDEa-h~l~~~~~~~ 195 (242)
T 3fe2_A 174 LRRT-TYLVLDEA-DRMLDMGFEP 195 (242)
T ss_dssp CTTC-CEEEETTH-HHHHHTTCHH
T ss_pred cccc-cEEEEeCH-HHHhhhCcHH
Confidence 9999 99999999 9999999864
No 3
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.97 E-value=6.6e-32 Score=207.29 Aligned_cols=141 Identities=35% Similarity=0.577 Sum_probs=123.8
Q ss_pred ccccCCcCcccCCCCCCC--CCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhH
Q 031654 11 FASENAAPASSSTNTLSS--PAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFP 86 (155)
Q Consensus 11 ~~~~~~~~~~~~~~~~p~--~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp 86 (155)
|..|+++++.+.|...|. ++.+|++++ +.++++|.++||..|+++|.++|+.+++|+|+++++|||||||++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~ 80 (253)
T 1wrb_A 1 FDKYDSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIP 80 (253)
T ss_dssp --CCCCCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CcchhhCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHH
Confidence 678899999999999887 889999987 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh-----------ch-------------------------------------HHHHHHHhcCCcEEEEChHH
Q 031654 87 IINGIMREYY-----------SA-------------------------------------RKELRELARWVDNLMATLRR 118 (155)
Q Consensus 87 ~l~~l~~~~~-----------~~-------------------------------------~~~~~~l~~~~~IlI~TP~~ 118 (155)
++..+..... .. ..+...+..+++|+|+||++
T Consensus 81 ~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~ 160 (253)
T 1wrb_A 81 IINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGR 160 (253)
T ss_dssp HHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHH
T ss_pred HHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHH
Confidence 9998864321 11 34445556678999999999
Q ss_pred HHHHHHcCCCCcccccceEEEEccccccccccccc
Q 031654 119 LVNLLERGRVSLQMIIRYLALKEAADQTLDMALNQ 153 (155)
Q Consensus 119 l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf~~ 153 (155)
|.+++..+.+.++++ +++|+||| |+|+++||.+
T Consensus 161 l~~~l~~~~~~~~~~-~~lViDEa-h~~~~~~~~~ 193 (253)
T 1wrb_A 161 LVDFIEKNKISLEFC-KYIVLDEA-DRMLDMGFEP 193 (253)
T ss_dssp HHHHHHTTSBCCTTC-CEEEEETH-HHHHHTTCHH
T ss_pred HHHHHHcCCCChhhC-CEEEEeCH-HHHHhCchHH
Confidence 999999988899999 99999999 9999999864
No 4
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.96 E-value=2.5e-30 Score=195.48 Aligned_cols=131 Identities=30% Similarity=0.441 Sum_probs=111.2
Q ss_pred cCCCCCCCCCccccc-CC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhh--
Q 031654 21 SSTNTLSSPAARFAY-VP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREY-- 95 (155)
Q Consensus 21 ~~~~~~p~~~~~f~~-l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~-- 95 (155)
..+...|.+..+|++ ++ ++++++|.++||..|+++|.++|+.+++|+|+++++|||||||++|++|++..+....
T Consensus 9 ~~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~ 88 (228)
T 3iuy_A 9 GEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS 88 (228)
T ss_dssp SSCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-----
T ss_pred CccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch
Confidence 345667899999999 45 9999999999999999999999999999999999999999999999999998775321
Q ss_pred ------hch------------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccc
Q 031654 96 ------YSA------------------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMI 133 (155)
Q Consensus 96 ------~~~------------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l 133 (155)
... ..+...+.++++|+|+||+++.+++..+.+.++++
T Consensus 89 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 89 REQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp ----CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred hhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 000 23334555678999999999999999998999999
Q ss_pred cceEEEEccccccccccccc
Q 031654 134 IRYLALKEAADQTLDMALNQ 153 (155)
Q Consensus 134 ~~~lVlDEa~D~ll~~gf~~ 153 (155)
+++|+||| |+|+++||.+
T Consensus 169 -~~lViDEa-h~~~~~~~~~ 186 (228)
T 3iuy_A 169 -TYLVIDEA-DKMLDMEFEP 186 (228)
T ss_dssp -CEEEECCH-HHHHHTTCHH
T ss_pred -eEEEEECH-HHHhccchHH
Confidence 99999999 9999999854
No 5
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.96 E-value=4.5e-29 Score=202.12 Aligned_cols=133 Identities=38% Similarity=0.629 Sum_probs=117.2
Q ss_pred cccCCCCCCCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhh
Q 031654 19 ASSSTNTLSSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYY 96 (155)
Q Consensus 19 ~~~~~~~~p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~ 96 (155)
+.+.|.+.|.++.+|++++ +.++++|+.+||..|||+|.++||.++.|+|++++||||||||++|++|++..+.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 4567888999999999987 99999999999999999999999999999999999999999999999999998875431
Q ss_pred c--------------------h-------------------------------------HHHHHHHhcCCcEEEEChHHH
Q 031654 97 S--------------------A-------------------------------------RKELRELARWVDNLMATLRRL 119 (155)
Q Consensus 97 ~--------------------~-------------------------------------~~~~~~l~~~~~IlI~TP~~l 119 (155)
. . ..+...+..+++|+|+||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 1 1 234445556789999999999
Q ss_pred HHHHHcCCCCcccccceEEEEccccccccccccc
Q 031654 120 VNLLERGRVSLQMIIRYLALKEAADQTLDMALNQ 153 (155)
Q Consensus 120 ~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf~~ 153 (155)
.+++..+.+.++++ +++|+||| |++++.+|.+
T Consensus 163 ~~~l~~~~~~~~~~-~~iViDEa-h~~~~~~~~~ 194 (417)
T 2i4i_A 163 VDMMERGKIGLDFC-KYLVLDEA-DRMLDMGFEP 194 (417)
T ss_dssp HHHHHTTSBCCTTC-CEEEESSH-HHHHHTTCHH
T ss_pred HHHHHcCCcChhhC-cEEEEECh-hHhhccCcHH
Confidence 99999988899999 99999999 9999998754
No 6
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.96 E-value=4.2e-30 Score=203.12 Aligned_cols=123 Identities=16% Similarity=0.280 Sum_probs=103.4
Q ss_pred CCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcC--CcEEEEccCCCCcchhhhhHHHHHHHHhhhch------
Q 031654 29 PAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAG--RDLMACAQTGSRKTTPFCFPIINGIMREYYSA------ 98 (155)
Q Consensus 29 ~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g--~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------ 98 (155)
...+|++++ +.++++|.++||..||++|.++||.++.| +|++++||||||||++|++|+++++.......
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~ 169 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEc
Confidence 467899987 99999999999999999999999999998 99999999999999999999999886543321
Q ss_pred ---------HHHHHHHh----------------------cCCcEEEEChHHHHHHHHc-CCCCcccccceEEEEcccccc
Q 031654 99 ---------RKELRELA----------------------RWVDNLMATLRRLVNLLER-GRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 99 ---------~~~~~~l~----------------------~~~~IlI~TP~~l~~~l~~-~~~~l~~l~~~lVlDEa~D~l 146 (155)
......+. .+++|+|+||++|.+++.+ +.++++++ ++|||||| |+|
T Consensus 170 PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l-~~lVlDEa-d~l 247 (300)
T 3fmo_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKI-KVFVLDEA-DVM 247 (300)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGC-SEEEETTH-HHH
T ss_pred CcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhc-eEEEEeCH-HHH
Confidence 11122221 2468999999999999976 57889999 99999999 999
Q ss_pred cc-ccccc
Q 031654 147 LD-MALNQ 153 (155)
Q Consensus 147 l~-~gf~~ 153 (155)
++ .||.+
T Consensus 248 ~~~~~~~~ 255 (300)
T 3fmo_B 248 IATQGHQD 255 (300)
T ss_dssp HHSTTHHH
T ss_pred hhccCcHH
Confidence 98 57754
No 7
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.96 E-value=9e-30 Score=194.34 Aligned_cols=131 Identities=28% Similarity=0.461 Sum_probs=110.0
Q ss_pred cCcccCCCCCCCCCcccccC----C--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHH
Q 031654 17 APASSSTNTLSSPAARFAYV----P--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIING 90 (155)
Q Consensus 17 ~~~~~~~~~~p~~~~~f~~l----~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~ 90 (155)
..+.+.+...|.++.+|+++ + +.++++|.++||..|+++|.++|+.+++|+|+++++|||||||++|++|++..
T Consensus 11 ~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~ 90 (245)
T 3dkp_A 11 HKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQ 90 (245)
T ss_dssp TTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 45667888999999999986 3 99999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhhc---h-------------HHHHHHH-------------------------hcCCcEEEEChHHHHHHHHcC--C
Q 031654 91 IMREYYS---A-------------RKELREL-------------------------ARWVDNLMATLRRLVNLLERG--R 127 (155)
Q Consensus 91 l~~~~~~---~-------------~~~~~~l-------------------------~~~~~IlI~TP~~l~~~l~~~--~ 127 (155)
+...... . .+....+ ..+++|+|+||++|.+++..+ .
T Consensus 91 l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~ 170 (245)
T 3dkp_A 91 LKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPG 170 (245)
T ss_dssp HCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCS
T ss_pred HhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCC
Confidence 8542111 1 1111111 235799999999999999886 5
Q ss_pred CCcccccceEEEEccccccccc
Q 031654 128 VSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 128 ~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
++++++ +++|+||| |+|++.
T Consensus 171 ~~~~~~-~~lViDEa-h~~~~~ 190 (245)
T 3dkp_A 171 IDLASV-EWLVVDES-DKLFED 190 (245)
T ss_dssp CCCTTC-CEEEESSH-HHHHHH
T ss_pred cccccC-cEEEEeCh-HHhccc
Confidence 789999 99999999 999984
No 8
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.95 E-value=3.1e-29 Score=191.18 Aligned_cols=131 Identities=24% Similarity=0.380 Sum_probs=104.0
Q ss_pred cCCCCCCCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch
Q 031654 21 SSTNTLSSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA 98 (155)
Q Consensus 21 ~~~~~~p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~ 98 (155)
+...+.|.+..+|++++ +.++++|.++||..|+++|.++|+.+++|+|+++++|||||||++|++|++..+.......
T Consensus 20 ~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~ 99 (237)
T 3bor_A 20 VIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKET 99 (237)
T ss_dssp -------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSC
T ss_pred cccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCc
Confidence 44556677889999988 9999999999999999999999999999999999999999999999999998765322111
Q ss_pred ---------------------------------------HHHHHHHhcC-CcEEEEChHHHHHHHHcCCCCcccccceEE
Q 031654 99 ---------------------------------------RKELRELARW-VDNLMATLRRLVNLLERGRVSLQMIIRYLA 138 (155)
Q Consensus 99 ---------------------------------------~~~~~~l~~~-~~IlI~TP~~l~~~l~~~~~~l~~l~~~lV 138 (155)
..+...+..+ ++|+|+||++|.+++.++.+.+.++ +++|
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~-~~lV 178 (237)
T 3bor_A 100 QALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI-KMFV 178 (237)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTC-CEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC-cEEE
Confidence 1111222223 8999999999999999988889999 9999
Q ss_pred EEccccccccccccc
Q 031654 139 LKEAADQTLDMALNQ 153 (155)
Q Consensus 139 lDEa~D~ll~~gf~~ 153 (155)
+||| |+|++.||..
T Consensus 179 iDEa-h~~~~~~~~~ 192 (237)
T 3bor_A 179 LDEA-DEMLSRGFKD 192 (237)
T ss_dssp EESH-HHHHHTTCHH
T ss_pred ECCc-hHhhccCcHH
Confidence 9999 9999998854
No 9
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.95 E-value=1.1e-28 Score=187.16 Aligned_cols=131 Identities=22% Similarity=0.308 Sum_probs=103.2
Q ss_pred cCCCCCCCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch
Q 031654 21 SSTNTLSSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA 98 (155)
Q Consensus 21 ~~~~~~p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~ 98 (155)
..++..|.+..+|++++ +.++++|+++||..|+++|.++++.+++|+|+++++|||||||++|++|++..+.......
T Consensus 14 ~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~ 93 (230)
T 2oxc_A 14 RTGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLST 93 (230)
T ss_dssp ----------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSC
T ss_pred ccCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCc
Confidence 34566677788999987 9999999999999999999999999999999999999999999999999998775432111
Q ss_pred ---------------H------------------------HHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEE
Q 031654 99 ---------------R------------------------KELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLAL 139 (155)
Q Consensus 99 ---------------~------------------------~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVl 139 (155)
. ........+++|+|+||+++.+++..+.+.+.++ +++|+
T Consensus 94 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~-~~lVi 172 (230)
T 2oxc_A 94 QILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSI-RLFIL 172 (230)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGC-CEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccC-CEEEe
Confidence 1 1111122358999999999999999988899999 99999
Q ss_pred Ecccccccccc-ccc
Q 031654 140 KEAADQTLDMA-LNQ 153 (155)
Q Consensus 140 DEa~D~ll~~g-f~~ 153 (155)
||| |+|+++| |.+
T Consensus 173 DEa-h~~~~~~~~~~ 186 (230)
T 2oxc_A 173 DEA-DKLLEEGSFQE 186 (230)
T ss_dssp SSH-HHHHSTTSSHH
T ss_pred CCc-hHhhcCcchHH
Confidence 999 9999987 653
No 10
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.95 E-value=3.1e-28 Score=187.36 Aligned_cols=124 Identities=29% Similarity=0.450 Sum_probs=107.8
Q ss_pred CCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-------
Q 031654 28 SPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA------- 98 (155)
Q Consensus 28 ~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------- 98 (155)
.+..+|++++ +.++++|+++||..|+++|.++++.+++|+|+++++|||||||++|++|++..+.......
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~P 119 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTP 119 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECS
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeC
Confidence 4467899988 9999999999999999999999999999999999999999999999999999887653221
Q ss_pred --------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHc-CCCCcccccceEEEEccccc
Q 031654 99 --------------------------------RKELRELARWVDNLMATLRRLVNLLER-GRVSLQMIIRYLALKEAADQ 145 (155)
Q Consensus 99 --------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~-~~~~l~~l~~~lVlDEa~D~ 145 (155)
..+...+..+++|+|+||++|.+++.+ +.+.+.++ +++|+||| |+
T Consensus 120 tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~-~~lViDEa-h~ 197 (249)
T 3ber_A 120 TRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL-KYLVMDEA-DR 197 (249)
T ss_dssp SHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTC-CEEEECSH-HH
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCcccc-CEEEEcCh-hh
Confidence 233444556899999999999999887 56789999 99999999 99
Q ss_pred cccccccc
Q 031654 146 TLDMALNQ 153 (155)
Q Consensus 146 ll~~gf~~ 153 (155)
|++++|..
T Consensus 198 l~~~~~~~ 205 (249)
T 3ber_A 198 ILNMDFET 205 (249)
T ss_dssp HHHTTCHH
T ss_pred hhccChHH
Confidence 99998854
No 11
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=3.1e-28 Score=180.89 Aligned_cols=121 Identities=24% Similarity=0.417 Sum_probs=104.2
Q ss_pred cccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------
Q 031654 31 ARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------- 98 (155)
Q Consensus 31 ~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------- 98 (155)
.+|++++ ++++++|.++||..|+++|.++++.+++|+|+++++|||||||++|++|++..+.......
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 4688887 9999999999999999999999999999999999999999999999999998764322111
Q ss_pred ------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccc
Q 031654 99 ------------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 99 ------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
..+...+..+++|+|+||+++.+.+.++...++++ +++|+||| |+|++
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~-~~lViDEa-h~~~~ 160 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV-QMIVLDEA-DKLLS 160 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTC-CEEEEETH-HHHTS
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccC-CEEEEECh-HHhHh
Confidence 23334445678999999999999999988889999 99999999 99999
Q ss_pred ccccc
Q 031654 149 MALNQ 153 (155)
Q Consensus 149 ~gf~~ 153 (155)
.+|..
T Consensus 161 ~~~~~ 165 (206)
T 1vec_A 161 QDFVQ 165 (206)
T ss_dssp TTTHH
T ss_pred hCcHH
Confidence 88753
No 12
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.95 E-value=6.3e-28 Score=186.91 Aligned_cols=115 Identities=25% Similarity=0.398 Sum_probs=100.1
Q ss_pred CHHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhh------hch------------
Q 031654 37 PQHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREY------YSA------------ 98 (155)
Q Consensus 37 ~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~------~~~------------ 98 (155)
+++++++|+++||..|+++|.++++.++.|+|++++||||||||++|++|++..+.... ...
T Consensus 62 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q 141 (262)
T 3ly5_A 62 NENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQ 141 (262)
T ss_dssp CHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999887622 111
Q ss_pred -------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcC-CCCcccccceEEEEcccccccccccc
Q 031654 99 -------------------------RKELRELARWVDNLMATLRRLVNLLERG-RVSLQMIIRYLALKEAADQTLDMALN 152 (155)
Q Consensus 99 -------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~-~~~l~~l~~~lVlDEa~D~ll~~gf~ 152 (155)
..+...+..+++|+|+||+++.+++... .+.++++ +++|+||| |+|+++||.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l-~~lViDEa-h~l~~~~~~ 219 (262)
T 3ly5_A 142 TFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNL-QCLVIDEA-DRILDVGFE 219 (262)
T ss_dssp HHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTC-CEEEECSH-HHHHHTTCH
T ss_pred HHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccC-CEEEEcCh-HHHhhhhHH
Confidence 3444555567999999999999988875 4789999 99999999 999999986
Q ss_pred c
Q 031654 153 Q 153 (155)
Q Consensus 153 ~ 153 (155)
+
T Consensus 220 ~ 220 (262)
T 3ly5_A 220 E 220 (262)
T ss_dssp H
T ss_pred H
Confidence 4
No 13
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.95 E-value=1.3e-28 Score=185.30 Aligned_cols=122 Identities=22% Similarity=0.358 Sum_probs=102.6
Q ss_pred CcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------
Q 031654 30 AARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA--------- 98 (155)
Q Consensus 30 ~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--------- 98 (155)
..+|++++ +.++++|+++||..|+++|.++++.+++|+|+++++|||||||++|++|++..+.......
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTR 82 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcH
Confidence 45799987 9999999999999999999999999999999999999999999999999998875432211
Q ss_pred ------HHHHHHH----------------------------hcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccc
Q 031654 99 ------RKELREL----------------------------ARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAAD 144 (155)
Q Consensus 99 ------~~~~~~l----------------------------~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D 144 (155)
.+....+ ..+++|+|+||+++.+++.++.+.+.++ +++|+||| |
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~-~~lViDEa-h 160 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTA-HILVVDEA-D 160 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGC-CEEEECSH-H
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcc-eEEEEcCc-h
Confidence 1111111 1257899999999999999988899999 99999999 9
Q ss_pred ccccccccc
Q 031654 145 QTLDMALNQ 153 (155)
Q Consensus 145 ~ll~~gf~~ 153 (155)
+++++||..
T Consensus 161 ~~~~~~~~~ 169 (219)
T 1q0u_A 161 LMLDMGFIT 169 (219)
T ss_dssp HHHHTTCHH
T ss_pred HHhhhChHH
Confidence 999988753
No 14
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.95 E-value=1.2e-27 Score=177.71 Aligned_cols=120 Identities=29% Similarity=0.444 Sum_probs=103.9
Q ss_pred ccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHh-----hhch------
Q 031654 32 RFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMRE-----YYSA------ 98 (155)
Q Consensus 32 ~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~-----~~~~------ 98 (155)
+|++++ ++++++|+++||..|+++|.++++.+++|+|+++++|||||||++|++|++..+... ....
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 588877 999999999999999999999999999999999999999999999999999877531 1111
Q ss_pred -----------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccc
Q 031654 99 -----------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 99 -----------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
..+...+..+++|+|+||+++.+++..+.+.+.++ +++|+||| |+|++.
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~-~~iViDEa-h~~~~~ 159 (207)
T 2gxq_A 82 RELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRV-EVAVLDEA-DEMLSM 159 (207)
T ss_dssp HHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTC-SEEEEESH-HHHHHT
T ss_pred HHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhc-eEEEEECh-hHhhcc
Confidence 23344455679999999999999999988899999 99999999 999998
Q ss_pred cccc
Q 031654 150 ALNQ 153 (155)
Q Consensus 150 gf~~ 153 (155)
+|..
T Consensus 160 ~~~~ 163 (207)
T 2gxq_A 160 GFEE 163 (207)
T ss_dssp TCHH
T ss_pred chHH
Confidence 8753
No 15
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.95 E-value=1.2e-27 Score=179.88 Aligned_cols=128 Identities=23% Similarity=0.353 Sum_probs=107.0
Q ss_pred CCCCCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---
Q 031654 24 NTLSSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA--- 98 (155)
Q Consensus 24 ~~~p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--- 98 (155)
.+.+.++.+|++++ +.++++|+++||..|+++|.++++.+++|+|+++++|||||||++|++|++..+.......
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~l 86 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQAL 86 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEE
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEE
Confidence 34566778999988 9999999999999999999999999999999999999999999999999998775432211
Q ss_pred ------------HHHHHHH-----------------------hcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccc
Q 031654 99 ------------RKELREL-----------------------ARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAA 143 (155)
Q Consensus 99 ------------~~~~~~l-----------------------~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~ 143 (155)
.+....+ ...++|+|+||+++.+.+.++...++++ +++|+|||
T Consensus 87 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~-~~iViDEa- 164 (224)
T 1qde_A 87 MLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKI-KMFILDEA- 164 (224)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTC-CEEEEETH-
T ss_pred EEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhC-cEEEEcCh-
Confidence 1111111 1238999999999999999988899999 99999999
Q ss_pred cccccccccc
Q 031654 144 DQTLDMALNQ 153 (155)
Q Consensus 144 D~ll~~gf~~ 153 (155)
|++++.+|..
T Consensus 165 h~~~~~~~~~ 174 (224)
T 1qde_A 165 DEMLSSGFKE 174 (224)
T ss_dssp HHHHHTTCHH
T ss_pred hHHhhhhhHH
Confidence 9999988753
No 16
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=180.49 Aligned_cols=124 Identities=24% Similarity=0.412 Sum_probs=104.6
Q ss_pred CCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhh-----h-ch
Q 031654 27 SSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREY-----Y-SA 98 (155)
Q Consensus 27 p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~-----~-~~ 98 (155)
+.++.+|++++ +.++++|+++||..|+++|.++++.+++|+|+++++|||||||++|++|++..+.... . ..
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 100 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGV 100 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceE
Confidence 34567899988 9999999999999999999999999999999999999999999999999999886521 1 11
Q ss_pred -------------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcC-CCCcccccceEEEE
Q 031654 99 -------------------------------------RKELRELARWVDNLMATLRRLVNLLERG-RVSLQMIIRYLALK 140 (155)
Q Consensus 99 -------------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~-~~~l~~l~~~lVlD 140 (155)
..+...+ .+++|+|+||+++.+++... .+.+.++ +++|+|
T Consensus 101 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~-~~lViD 178 (236)
T 2pl3_A 101 LIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDL-QMLVLD 178 (236)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTC-CEEEET
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccc-cEEEEe
Confidence 1122222 46899999999999998775 5778999 999999
Q ss_pred ccccccccccccc
Q 031654 141 EAADQTLDMALNQ 153 (155)
Q Consensus 141 Ea~D~ll~~gf~~ 153 (155)
|| |+|+++||.+
T Consensus 179 Ea-h~~~~~~~~~ 190 (236)
T 2pl3_A 179 EA-DRILDMGFAD 190 (236)
T ss_dssp TH-HHHHHTTTHH
T ss_pred Ch-HHHhcCCcHH
Confidence 99 9999998753
No 17
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.94 E-value=5e-27 Score=190.10 Aligned_cols=138 Identities=22% Similarity=0.373 Sum_probs=114.3
Q ss_pred cCCcCcccCCCCCCCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHH
Q 031654 14 ENAAPASSSTNTLSSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGI 91 (155)
Q Consensus 14 ~~~~~~~~~~~~~p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l 91 (155)
++...+.......+.+..+|++++ +.++++|.++||..|+|+|.++|+.+++|+|+++++|||||||++|++|++..+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l 99 (410)
T 2j0s_A 20 EDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCL 99 (410)
T ss_dssp CCSSSCCCCCCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTC
T ss_pred ccCcccccCCCCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHH
Confidence 333444445555556677899988 999999999999999999999999999999999999999999999999999876
Q ss_pred HHhhhch---------------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCccc
Q 031654 92 MREYYSA---------------------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQM 132 (155)
Q Consensus 92 ~~~~~~~---------------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~ 132 (155)
....... ..+...+..+++|+|+||++|.+++.++.+.+.+
T Consensus 100 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 100 DIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred hhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhh
Confidence 4221111 3344455567899999999999999999889999
Q ss_pred ccceEEEEccccccccccccc
Q 031654 133 IIRYLALKEAADQTLDMALNQ 153 (155)
Q Consensus 133 l~~~lVlDEa~D~ll~~gf~~ 153 (155)
+ +++|+||| |+|++.+|.+
T Consensus 180 ~-~~vViDEa-h~~~~~~~~~ 198 (410)
T 2j0s_A 180 I-KMLVLDEA-DEMLNKGFKE 198 (410)
T ss_dssp C-CEEEEETH-HHHTSTTTHH
T ss_pred e-eEEEEccH-HHHHhhhhHH
Confidence 9 99999999 9999998753
No 18
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=7.9e-27 Score=175.23 Aligned_cols=128 Identities=19% Similarity=0.268 Sum_probs=101.3
Q ss_pred CCCCCCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhc--h
Q 031654 23 TNTLSSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYS--A 98 (155)
Q Consensus 23 ~~~~p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~--~ 98 (155)
+...+.+..+|++++ +.++++|+++||+.|+++|.++++.+++|+|+++++|||||||++|++|++..+...... .
T Consensus 6 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~ 85 (220)
T 1t6n_A 6 GSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSV 85 (220)
T ss_dssp --------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCE
T ss_pred CCcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEE
Confidence 334445556799987 999999999999999999999999999999999999999999999999999876432221 1
Q ss_pred --------------------------------------HHHHHHHh-cCCcEEEEChHHHHHHHHcCCCCcccccceEEE
Q 031654 99 --------------------------------------RKELRELA-RWVDNLMATLRRLVNLLERGRVSLQMIIRYLAL 139 (155)
Q Consensus 99 --------------------------------------~~~~~~l~-~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVl 139 (155)
..+...+. ..++|+|+||+++.+++..+.+.+.++ +++|+
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~-~~lVi 164 (220)
T 1t6n_A 86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHI-KHFIL 164 (220)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC-CEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccC-CEEEE
Confidence 12222222 246999999999999999988899999 99999
Q ss_pred Ecccccccc-cccc
Q 031654 140 KEAADQTLD-MALN 152 (155)
Q Consensus 140 DEa~D~ll~-~gf~ 152 (155)
||| |++++ .+|.
T Consensus 165 DEa-h~~~~~~~~~ 177 (220)
T 1t6n_A 165 DEC-DKMLEQLDMR 177 (220)
T ss_dssp ESH-HHHHSSHHHH
T ss_pred cCH-HHHhcccCcH
Confidence 999 99997 4654
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.92 E-value=4.7e-25 Score=178.10 Aligned_cols=129 Identities=25% Similarity=0.377 Sum_probs=108.9
Q ss_pred CCCCCCCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-
Q 031654 22 STNTLSSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA- 98 (155)
Q Consensus 22 ~~~~~p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~- 98 (155)
...+.+....+|++++ +.+++.|+++||..|+++|.++|+.+++|+|+++++|||||||++|++|+++.+.......
T Consensus 31 ~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~ 110 (414)
T 3eiq_A 31 IESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQ 110 (414)
T ss_dssp CCCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCC
T ss_pred cCCCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCcee
Confidence 3444566778899987 9999999999999999999999999999999999999999999999999998765421111
Q ss_pred --------------------------------------HHHHHHHh-cCCcEEEEChHHHHHHHHcCCCCcccccceEEE
Q 031654 99 --------------------------------------RKELRELA-RWVDNLMATLRRLVNLLERGRVSLQMIIRYLAL 139 (155)
Q Consensus 99 --------------------------------------~~~~~~l~-~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVl 139 (155)
..+...+. .+++|+|+||++|.+++..+.+.+.++ +++|+
T Consensus 111 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~-~~vVi 189 (414)
T 3eiq_A 111 ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYI-KMFVL 189 (414)
T ss_dssp EEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTC-CEEEE
T ss_pred EEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccC-cEEEE
Confidence 22222332 578999999999999999998899999 99999
Q ss_pred Ecccccccccccc
Q 031654 140 KEAADQTLDMALN 152 (155)
Q Consensus 140 DEa~D~ll~~gf~ 152 (155)
||| |++++.+|.
T Consensus 190 DEa-h~~~~~~~~ 201 (414)
T 3eiq_A 190 DEA-DEMLSRGFK 201 (414)
T ss_dssp CSH-HHHHHTTTH
T ss_pred ECH-HHhhccCcH
Confidence 999 999998875
No 20
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.91 E-value=8.7e-25 Score=176.21 Aligned_cols=123 Identities=25% Similarity=0.392 Sum_probs=103.3
Q ss_pred CCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhc--h-----
Q 031654 28 SPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYS--A----- 98 (155)
Q Consensus 28 ~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~--~----- 98 (155)
....+|++++ +.++++|.++||+.|+|+|.++++.+++|+|+++++|||||||++|++|++..+...... .
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 97 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVP 97 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcC
Confidence 3456899988 999999999999999999999999999999999999999999999999999876432111 1
Q ss_pred --------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccc
Q 031654 99 --------------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 99 --------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~l 146 (155)
..+...+..+++|+|+||+++.+++.++...+.++ +++|+||| |++
T Consensus 98 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~-~~vIiDEa-H~~ 175 (400)
T 1s2m_A 98 TRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDC-SLFIMDEA-DKM 175 (400)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTC-CEEEEESH-HHH
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccC-CEEEEeCc-hHh
Confidence 22333444678999999999999999888889999 99999999 999
Q ss_pred cccccc
Q 031654 147 LDMALN 152 (155)
Q Consensus 147 l~~gf~ 152 (155)
++.+|.
T Consensus 176 ~~~~~~ 181 (400)
T 1s2m_A 176 LSRDFK 181 (400)
T ss_dssp SSHHHH
T ss_pred hhhchH
Confidence 887654
No 21
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.91 E-value=3.8e-25 Score=187.69 Aligned_cols=116 Identities=24% Similarity=0.440 Sum_probs=97.7
Q ss_pred CCHHHHHhHHhCCCCCCCHHHHHHHHHHh--cCCcEEEEccCCCCcchhhhhHHHHHHHHhhhc------h---------
Q 031654 36 VPQHLRNKPRTYKYVKPTPVQRHATSILV--AGRDLMACAQTGSRKTTPFCFPIINGIMREYYS------A--------- 98 (155)
Q Consensus 36 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l--~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~------~--------- 98 (155)
|+++++++|+++||..|+|+|.++|+.++ .|+|++++||||||||++|++|+++.+...... .
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 34999999999999999999999999999 789999999999999999999999988765311 1
Q ss_pred --------------------------------HHHHHHH-hcCCcEEEEChHHHHHHHHcC-CCCcccccceEEEEcccc
Q 031654 99 --------------------------------RKELREL-ARWVDNLMATLRRLVNLLERG-RVSLQMIIRYLALKEAAD 144 (155)
Q Consensus 99 --------------------------------~~~~~~l-~~~~~IlI~TP~~l~~~l~~~-~~~l~~l~~~lVlDEa~D 144 (155)
..+...+ ..+++|+|+||++|.+++.+. ...++.+ ++||+||| |
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~-~~lViDEa-h 185 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV-DYKVLDEA-D 185 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC-CEEEEETH-H
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccC-CEEEEECh-H
Confidence 1122222 236899999999999998875 4567889 99999999 9
Q ss_pred ccccccccc
Q 031654 145 QTLDMALNQ 153 (155)
Q Consensus 145 ~ll~~gf~~ 153 (155)
+|+++||.+
T Consensus 186 ~l~~~gf~~ 194 (579)
T 3sqw_A 186 RLLEIGFRD 194 (579)
T ss_dssp HHTSTTTHH
T ss_pred HhhcCCCHH
Confidence 999999865
No 22
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.91 E-value=5.1e-25 Score=185.61 Aligned_cols=116 Identities=24% Similarity=0.440 Sum_probs=97.4
Q ss_pred CCHHHHHhHHhCCCCCCCHHHHHHHHHHh--cCCcEEEEccCCCCcchhhhhHHHHHHHHhhhc------h---------
Q 031654 36 VPQHLRNKPRTYKYVKPTPVQRHATSILV--AGRDLMACAQTGSRKTTPFCFPIINGIMREYYS------A--------- 98 (155)
Q Consensus 36 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l--~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~------~--------- 98 (155)
++++++++|.++||..|+|+|.++|+.++ .|+|++++||||||||++|++|+++.+...... .
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 44999999999999999999999999999 678999999999999999999999998765411 1
Q ss_pred --------------------------------HHHHHHH-hcCCcEEEEChHHHHHHHHcC-CCCcccccceEEEEcccc
Q 031654 99 --------------------------------RKELREL-ARWVDNLMATLRRLVNLLERG-RVSLQMIIRYLALKEAAD 144 (155)
Q Consensus 99 --------------------------------~~~~~~l-~~~~~IlI~TP~~l~~~l~~~-~~~l~~l~~~lVlDEa~D 144 (155)
..+...+ ..+++|+|+||++|.+++.+. ...++.+ ++||+||| |
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~-~~lViDEa-h 236 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV-DYKVLDEA-D 236 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC-CEEEEETH-H
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccc-eEEEEeCH-H
Confidence 1122222 337899999999999998875 3467889 99999999 9
Q ss_pred ccccccccc
Q 031654 145 QTLDMALNQ 153 (155)
Q Consensus 145 ~ll~~gf~~ 153 (155)
+|+++||.+
T Consensus 237 ~l~~~~f~~ 245 (563)
T 3i5x_A 237 RLLEIGFRD 245 (563)
T ss_dssp HHTSTTTHH
T ss_pred HHhccchHH
Confidence 999999864
No 23
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.90 E-value=8.9e-24 Score=170.30 Aligned_cols=124 Identities=15% Similarity=0.262 Sum_probs=102.4
Q ss_pred CCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcC--CcEEEEccCCCCcchhhhhHHHHHHHHhhhch----
Q 031654 27 SSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAG--RDLMACAQTGSRKTTPFCFPIINGIMREYYSA---- 98 (155)
Q Consensus 27 p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g--~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---- 98 (155)
...+.+|++++ +.++++|.++||..|+|+|.++|+.++.| +|+++++|||||||++|++|++..+.......
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~li 100 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLC 100 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEE
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEE
Confidence 35678899987 99999999999999999999999999998 99999999999999999999998876443221
Q ss_pred --------HHH---HHHHh----------------------cCCcEEEEChHHHHHHHHc-CCCCcccccceEEEEcccc
Q 031654 99 --------RKE---LRELA----------------------RWVDNLMATLRRLVNLLER-GRVSLQMIIRYLALKEAAD 144 (155)
Q Consensus 99 --------~~~---~~~l~----------------------~~~~IlI~TP~~l~~~l~~-~~~~l~~l~~~lVlDEa~D 144 (155)
.+. ...+. .+++|+|+||+++.+++.+ +.+.+.++ +++|+||| |
T Consensus 101 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~-~~iViDEa-h 178 (412)
T 3fht_A 101 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKI-KVFVLDEA-D 178 (412)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGC-CEEEEETH-H
T ss_pred ECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhC-cEEEEeCH-H
Confidence 111 22221 1369999999999999966 56788999 99999999 9
Q ss_pred cccc-cccc
Q 031654 145 QTLD-MALN 152 (155)
Q Consensus 145 ~ll~-~gf~ 152 (155)
++++ .+|.
T Consensus 179 ~~~~~~~~~ 187 (412)
T 3fht_A 179 VMIATQGHQ 187 (412)
T ss_dssp HHHSTTTTH
T ss_pred HHhhcCCcH
Confidence 9987 4553
No 24
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.90 E-value=5.9e-24 Score=170.07 Aligned_cols=121 Identities=27% Similarity=0.422 Sum_probs=101.0
Q ss_pred CCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcC--CcEEEEccCCCCcchhhhhHHHHHHHHhhhch------
Q 031654 29 PAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAG--RDLMACAQTGSRKTTPFCFPIINGIMREYYSA------ 98 (155)
Q Consensus 29 ~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g--~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------ 98 (155)
...+|++++ +.++++|.++||..|+|+|.++++.++.| +|+++++|||||||++|++|++..+.......
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 357899988 99999999999999999999999999998 99999999999999999999998775432211
Q ss_pred ------HHH---HHHHh--------------------cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccc-
Q 031654 99 ------RKE---LRELA--------------------RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLD- 148 (155)
Q Consensus 99 ------~~~---~~~l~--------------------~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~- 148 (155)
.+. ...+. .+++|+|+||+++.+++.++...+.++ +++|+||| |++.+
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~-~~iIiDEa-h~~~~~ 160 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKI-KIFVLDEA-DNMLDQ 160 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTC-CEEEEETH-HHHHHS
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccC-CEEEEECh-hhhcCc
Confidence 111 22211 157999999999999999988899999 99999999 99987
Q ss_pred ccc
Q 031654 149 MAL 151 (155)
Q Consensus 149 ~gf 151 (155)
.+|
T Consensus 161 ~~~ 163 (395)
T 3pey_A 161 QGL 163 (395)
T ss_dssp TTH
T ss_pred ccc
Confidence 454
No 25
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.90 E-value=5.3e-24 Score=176.41 Aligned_cols=122 Identities=16% Similarity=0.277 Sum_probs=100.8
Q ss_pred CCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcC--CcEEEEccCCCCcchhhhhHHHHHHHHhhhch------
Q 031654 29 PAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAG--RDLMACAQTGSRKTTPFCFPIINGIMREYYSA------ 98 (155)
Q Consensus 29 ~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g--~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------ 98 (155)
+..+|++++ +.++++|.++||..|+|+|.++||.++.| +|++++||||||||++|++|++..+.......
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~ 169 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEEC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEe
Confidence 356888887 99999999999999999999999999987 99999999999999999999998876544221
Q ss_pred ------HHH---HHHHh----------------------cCCcEEEEChHHHHHHHHc-CCCCcccccceEEEEcccccc
Q 031654 99 ------RKE---LRELA----------------------RWVDNLMATLRRLVNLLER-GRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 99 ------~~~---~~~l~----------------------~~~~IlI~TP~~l~~~l~~-~~~~l~~l~~~lVlDEa~D~l 146 (155)
.+. ...+. .+++|+|+||++|.+++.+ +.+.+.++ ++||+||| |+|
T Consensus 170 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~-~~iViDEa-h~~ 247 (479)
T 3fmp_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKI-KVFVLDEA-DVM 247 (479)
T ss_dssp SSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGC-CEEEECCH-HHH
T ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccC-CEEEEECH-HHH
Confidence 111 22221 1358999999999999966 56789999 99999999 999
Q ss_pred cc-cccc
Q 031654 147 LD-MALN 152 (155)
Q Consensus 147 l~-~gf~ 152 (155)
++ .+|.
T Consensus 248 ~~~~~~~ 254 (479)
T 3fmp_B 248 IATQGHQ 254 (479)
T ss_dssp HTSTTHH
T ss_pred hhcCCcH
Confidence 97 4654
No 26
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.90 E-value=3.2e-24 Score=171.98 Aligned_cols=123 Identities=23% Similarity=0.356 Sum_probs=103.4
Q ss_pred CCCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch------
Q 031654 27 SSPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA------ 98 (155)
Q Consensus 27 p~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------ 98 (155)
..+..+|++++ +.+.++|..+||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+.......
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 96 (394)
T 1fuu_A 17 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA 96 (394)
T ss_dssp CCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred ccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEc
Confidence 34556799887 9999999999999999999999999999999999999999999999999998765432211
Q ss_pred ---------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccc
Q 031654 99 ---------------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQ 145 (155)
Q Consensus 99 ---------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ 145 (155)
..+...+ .+++|+|+||+++.+.+..+.+.+.++ +++|+||| |+
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~~~~~~~~~-~~vIiDEa-h~ 173 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKI-KMFILDEA-DE 173 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHH-HHCSEEEECHHHHHHHHHTTSSCCTTC-CEEEEETH-HH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhc-CCCCEEEECHHHHHHHHHhCCcchhhC-cEEEEECh-HH
Confidence 1111111 257999999999999999988889999 99999999 99
Q ss_pred ccccccc
Q 031654 146 TLDMALN 152 (155)
Q Consensus 146 ll~~gf~ 152 (155)
+++.+|.
T Consensus 174 ~~~~~~~ 180 (394)
T 1fuu_A 174 MLSSGFK 180 (394)
T ss_dssp HHHTTCH
T ss_pred hhCCCcH
Confidence 9988775
No 27
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.89 E-value=1.4e-23 Score=168.31 Aligned_cols=119 Identities=19% Similarity=0.276 Sum_probs=98.5
Q ss_pred cccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhc--h--------
Q 031654 31 ARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYS--A-------- 98 (155)
Q Consensus 31 ~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~--~-------- 98 (155)
.+|++++ +.++++|.++||+.|+|+|.++++.++.|+|+++++|||+|||++|++|++..+...... .
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 4688877 999999999999999999999999999999999999999999999999998875432211 1
Q ss_pred ------------------------------HHHHHHHh-cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccc
Q 031654 99 ------------------------------RKELRELA-RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 99 ------------------------------~~~~~~l~-~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll 147 (155)
..+...+. ..++|+|+||+++.+++..+...+.++ +++|+||| |+++
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~-~~vViDEa-H~~~ 165 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHI-KHFILDEC-DKML 165 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC-SEEEECSH-HHHT
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccc-CEEEEeCH-HHHh
Confidence 11112222 237999999999999999988889999 99999999 9998
Q ss_pred cc-cc
Q 031654 148 DM-AL 151 (155)
Q Consensus 148 ~~-gf 151 (155)
+. +|
T Consensus 166 ~~~~~ 170 (391)
T 1xti_A 166 EQLDM 170 (391)
T ss_dssp SSHHH
T ss_pred hccch
Confidence 73 54
No 28
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.89 E-value=3.1e-23 Score=164.35 Aligned_cols=120 Identities=25% Similarity=0.437 Sum_probs=100.7
Q ss_pred CcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcC-CcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------
Q 031654 30 AARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAG-RDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------- 98 (155)
Q Consensus 30 ~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g-~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------- 98 (155)
..+|++++ +.++++|+++||..|+|+|.++++.+++| +++++++|||||||++|++|++..+.......
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~ 84 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTR 84 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCH
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCH
Confidence 35788877 99999999999999999999999999998 79999999999999999999987664322111
Q ss_pred ------------------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccc
Q 031654 99 ------------------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 99 ------------------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
..+...+ .+++|+|+||+++.+.+..+.+.+.++ +++|+||| |++.+
T Consensus 85 ~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~-~~iIiDEa-h~~~~ 161 (367)
T 1hv8_A 85 ELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHINRGTLNLKNV-KYFILDEA-DEMLN 161 (367)
T ss_dssp HHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH-HTCSEEEECHHHHHHHHHTTCSCTTSC-CEEEEETH-HHHHT
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc-CCCCEEEecHHHHHHHHHcCCcccccC-CEEEEeCc-hHhhh
Confidence 1111222 268999999999999999988889999 99999999 99998
Q ss_pred cccc
Q 031654 149 MALN 152 (155)
Q Consensus 149 ~gf~ 152 (155)
.+|.
T Consensus 162 ~~~~ 165 (367)
T 1hv8_A 162 MGFI 165 (367)
T ss_dssp TTTH
T ss_pred hchH
Confidence 8764
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.88 E-value=2.5e-22 Score=157.72 Aligned_cols=111 Identities=24% Similarity=0.428 Sum_probs=93.8
Q ss_pred CCHHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-----------------
Q 031654 36 VPQHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------------- 98 (155)
Q Consensus 36 l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------------- 98 (155)
|++++.++|+++||..|+|+|.++++.+++|+|+++++|||+|||++|++|++.. .....
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---~~~~liv~P~~~L~~q~~~~~~ 77 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---GMKSLVVTPTRELTRQVASHIR 77 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEECSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---cCCEEEEeCCHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999998763 11110
Q ss_pred -------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccccccc
Q 031654 99 -------------------RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMALN 152 (155)
Q Consensus 99 -------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf~ 152 (155)
..+...+ ..++|+|+||++|.+++..+.+.+.++ +++|+||| |++.+.+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~~~~~~~~~-~~iViDEa-h~~~~~~~~ 147 (337)
T 2z0m_A 78 DIGRYMDTKVAEVYGGMPYKAQINRV-RNADIVVATPGRLLDLWSKGVIDLSSF-EIVIIDEA-DLMFEMGFI 147 (337)
T ss_dssp HHTTTSCCCEEEECTTSCHHHHHHHH-TTCSEEEECHHHHHHHHHTTSCCGGGC-SEEEEESH-HHHHHTTCH
T ss_pred HHhhhcCCcEEEEECCcchHHHHhhc-CCCCEEEECHHHHHHHHHcCCcchhhC-cEEEEECh-HHhhccccH
Confidence 1122222 348999999999999999888889999 99999999 999988874
No 30
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.83 E-value=1.9e-20 Score=162.11 Aligned_cols=119 Identities=20% Similarity=0.185 Sum_probs=99.3
Q ss_pred cccccCC--HHHHHhHHhCCCCCCCHHHHHHHHH-HhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------
Q 031654 31 ARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSI-LVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA--------- 98 (155)
Q Consensus 31 ~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~-~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--------- 98 (155)
.+|++++ +++.+.+++.||..|+|+|.++++. +.+|+|++++||||||||++|.+|+++.+.......
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~L 87 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRAL 87 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHH
Confidence 4688886 9999999999999999999999999 788999999999999999999999998876433222
Q ss_pred -HHHHHHHh-----------------------cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccccc
Q 031654 99 -RKELRELA-----------------------RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 99 -~~~~~~l~-----------------------~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf 151 (155)
.+....+. ..++|+|+||+++..++.++...++++ +++|+||| |.+.+.++
T Consensus 88 a~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~-~~vIiDE~-H~l~~~~~ 162 (715)
T 2va8_A 88 TNEKYLTFKDWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEV-NYFVLDEL-HYLNDPER 162 (715)
T ss_dssp HHHHHHHHGGGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGE-EEEEECSG-GGGGCTTT
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhcc-CEEEEech-hhcCCccc
Confidence 22222221 147999999999999998877779999 99999999 99876554
No 31
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.83 E-value=2e-21 Score=163.74 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=89.9
Q ss_pred cccccCC--HHHHHhHHh-CCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------
Q 031654 31 ARFAYVP--QHLRNKPRT-YKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA--------- 98 (155)
Q Consensus 31 ~~f~~l~--~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--------- 98 (155)
.+|++++ +.+.+.|++ +||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. .....
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---~g~~lvi~P~~aL~ 78 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---NGLTVVVSPLISLM 78 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---SSEEEEECSCHHHH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---CCCEEEECChHHHH
Confidence 5789998 889999998 79999999999999999999999999999999999999998742 11000
Q ss_pred -----------------------H---HHHHHH-hcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccccc
Q 031654 99 -----------------------R---KELREL-ARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMA 150 (155)
Q Consensus 99 -----------------------~---~~~~~l-~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~g 150 (155)
. .....+ ...++|+++||++|......+.+...++ .++|+||| |++.++|
T Consensus 79 ~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~-~~vViDEa-H~i~~~g 155 (523)
T 1oyw_A 79 KDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNP-VLLAVDEA-HCISQWG 155 (523)
T ss_dssp HHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCE-EEEEESSG-GGGCTTS
T ss_pred HHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCC-CEEEEeCc-cccCcCC
Confidence 1 111222 3468999999999853222222345788 99999999 9999988
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.83 E-value=3.3e-20 Score=158.42 Aligned_cols=124 Identities=16% Similarity=0.265 Sum_probs=91.6
Q ss_pred CCCCccccc--CC--HHHHHhHHh-CCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHH-----------
Q 031654 27 SSPAARFAY--VP--QHLRNKPRT-YKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIING----------- 90 (155)
Q Consensus 27 p~~~~~f~~--l~--~~l~~~l~~-~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~----------- 90 (155)
+....+|.. ++ +.+.+.|++ +||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++..
T Consensus 15 ~~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~ 94 (591)
T 2v1x_A 15 DSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLI 94 (591)
T ss_dssp -CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCH
T ss_pred CcchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHH
Confidence 334455554 55 889999998 69999999999999999999999999999999999999999752
Q ss_pred -HHHhhhch--------------------HHHHHHH---hcCCcEEEEChHHHH------HHHHcCCCCcccccceEEEE
Q 031654 91 -IMREYYSA--------------------RKELREL---ARWVDNLMATLRRLV------NLLERGRVSLQMIIRYLALK 140 (155)
Q Consensus 91 -l~~~~~~~--------------------~~~~~~l---~~~~~IlI~TP~~l~------~~l~~~~~~l~~l~~~lVlD 140 (155)
|....... ......+ ...++|+|+||++|. +.+. +...+.++ .++|||
T Consensus 95 ~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~-~~~~~~~i-~~iViD 172 (591)
T 2v1x_A 95 SLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE-KAYEARRF-TRIAVD 172 (591)
T ss_dssp HHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH-HHHHTTCE-EEEEEE
T ss_pred HHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH-hhhhccCC-cEEEEE
Confidence 11000000 1111222 357899999999874 2232 23456789 999999
Q ss_pred cccccccccc--ccc
Q 031654 141 EAADQTLDMA--LNQ 153 (155)
Q Consensus 141 Ea~D~ll~~g--f~~ 153 (155)
|| |++.++| |.+
T Consensus 173 EA-H~is~~g~dfr~ 186 (591)
T 2v1x_A 173 EV-HCCSQWGHDFRP 186 (591)
T ss_dssp TG-GGGSTTCTTCCG
T ss_pred Cc-ccccccccccHH
Confidence 99 9999998 654
No 33
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.83 E-value=2.2e-20 Score=162.08 Aligned_cols=118 Identities=17% Similarity=0.196 Sum_probs=98.6
Q ss_pred ccccCC--HHHHHhHHhCCCCCCCHHHHHHHHH-HhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------
Q 031654 32 RFAYVP--QHLRNKPRTYKYVKPTPVQRHATSI-LVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------- 98 (155)
Q Consensus 32 ~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~-~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------- 98 (155)
+|++++ +++.+.+++.||..|+|+|.++++. +.+|+|++++||||||||++|.+|++..+.......
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa 81 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALA 81 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGH
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHH
Confidence 477776 9999999999999999999999998 889999999999999999999999998887433222
Q ss_pred HHHHHHHh-----------------------cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccccc
Q 031654 99 RKELRELA-----------------------RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 99 ~~~~~~l~-----------------------~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf 151 (155)
.+....+. ..++|+|+||+++..++.++...++++ +++|+||| |.+.+.++
T Consensus 82 ~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~-~~vIiDE~-H~l~~~~r 155 (720)
T 2zj8_A 82 EEKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDV-KILVADEI-HLIGSRDR 155 (720)
T ss_dssp HHHHHHTGGGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGE-EEEEEETG-GGGGCTTT
T ss_pred HHHHHHHHHHHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcC-CEEEEECC-cccCCCcc
Confidence 22222221 247999999999999998877778999 99999999 98887554
No 34
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.83 E-value=3.5e-21 Score=156.57 Aligned_cols=106 Identities=19% Similarity=0.120 Sum_probs=82.4
Q ss_pred HHHHHhHHhC-CCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch------------------
Q 031654 38 QHLRNKPRTY-KYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA------------------ 98 (155)
Q Consensus 38 ~~l~~~l~~~-g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------------------ 98 (155)
+++.+.+++. || .|+|+|.++|+.+++|+|+++++|||||||++|++|++..+.......
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 86 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK 86 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHH
Confidence 4566666654 66 899999999999999999999999999999999999887652221111
Q ss_pred --------------------HHHHHHHhcC-CcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccc
Q 031654 99 --------------------RKELRELARW-VDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 99 --------------------~~~~~~l~~~-~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
..+...+..+ ++|+|+||++|.+++.. +.+.++ +++|+||| |++.+
T Consensus 87 ~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~-~~iViDEa-H~~~~ 153 (414)
T 3oiy_A 87 LADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRF-DFVFVDDV-DAVLK 153 (414)
T ss_dssp HCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCC-SEEEESCH-HHHHH
T ss_pred HccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccc-cEEEEeCh-Hhhhh
Confidence 1123344444 99999999999888874 667799 99999999 86553
No 35
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.83 E-value=7.9e-21 Score=166.23 Aligned_cols=102 Identities=22% Similarity=0.199 Sum_probs=81.1
Q ss_pred hCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------------------------
Q 031654 46 TYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA--------------------------- 98 (155)
Q Consensus 46 ~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--------------------------- 98 (155)
.+|| +||++|..++|.++.|+ ++.++||||||++|++|++..........
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v 155 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTV 155 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 5799 99999999999999999 99999999999999999985433221111
Q ss_pred -------HHHHHHHhcCCcEEEEChHHH-HHHHHcC------CCCcccccceEEEEccccccc-ccccc
Q 031654 99 -------RKELRELARWVDNLMATLRRL-VNLLERG------RVSLQMIIRYLALKEAADQTL-DMALN 152 (155)
Q Consensus 99 -------~~~~~~l~~~~~IlI~TP~~l-~~~l~~~------~~~l~~l~~~lVlDEa~D~ll-~~gf~ 152 (155)
..+.+....+|||+||||++| .+++..+ .+.++.+ +++||||| |.|| |+++.
T Consensus 156 ~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~-~~lVlDEa-D~mLiDea~t 222 (844)
T 1tf5_A 156 GLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPL-HFAVIDEV-DSILIDEART 222 (844)
T ss_dssp EECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCC-CEEEEETH-HHHHTTTTTC
T ss_pred EEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCC-CEEEECch-hhhhhhcccc
Confidence 223344445799999999999 6766543 3678899 99999999 9999 88754
No 36
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.82 E-value=2.7e-20 Score=160.13 Aligned_cols=105 Identities=21% Similarity=0.256 Sum_probs=83.7
Q ss_pred HHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhh----ch------------------
Q 031654 41 RNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYY----SA------------------ 98 (155)
Q Consensus 41 ~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~----~~------------------ 98 (155)
.++|..+||..|+++|.++++.++.|+|+++++|||||||++|++|+++.+..... ..
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999998875431 11
Q ss_pred -------------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCC-CcccccceEEEEccccccc
Q 031654 99 -------------------RKELRELARWVDNLMATLRRLVNLLERGRV-SLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 99 -------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~-~l~~l~~~lVlDEa~D~ll 147 (155)
..+...+..+++|+|+||++|.+.+..+.+ .+.++ +++||||| |++.
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~-~~vViDEa-H~~~ 149 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF-TLMIFDEC-HNTS 149 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGC-SEEEEETG-GGCS
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccc-cEEEEeCC-Cccc
Confidence 111222334689999999999999998877 79999 99999999 9953
No 37
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.81 E-value=1.1e-20 Score=163.66 Aligned_cols=118 Identities=12% Similarity=0.089 Sum_probs=94.7
Q ss_pred ccccCC----HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------
Q 031654 32 RFAYVP----QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA--------- 98 (155)
Q Consensus 32 ~f~~l~----~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--------- 98 (155)
+|++++ +.+.+.+++.||+.|+|+|.++++.+++|+|++++||||||||++|.+|++..+.......
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La 81 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALA 81 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHH
Confidence 456644 7889999999999999999999999999999999999999999999999998876432221
Q ss_pred HHHHHHHh-----------------------cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccccc
Q 031654 99 RKELRELA-----------------------RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 99 ~~~~~~l~-----------------------~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf 151 (155)
.+..+.+. .+++|+|+||+++..++.++...++++ +++|+||| |.+.+.++
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~-~~vIiDE~-H~l~~~~r 155 (702)
T 2p6r_A 82 GEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAV-SCLVVDEI-HLLDSEKR 155 (702)
T ss_dssp HHHHHHHTTTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGC-CEEEETTG-GGGGCTTT
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhc-CEEEEeee-eecCCCCc
Confidence 33333331 157999999999999999877779999 99999999 99887654
No 38
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.81 E-value=3.9e-21 Score=161.09 Aligned_cols=123 Identities=17% Similarity=0.279 Sum_probs=83.0
Q ss_pred CCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcC--CcEEEEccCCCCcchhhhhHHHHHHHHhhhch-----
Q 031654 28 SPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAG--RDLMACAQTGSRKTTPFCFPIINGIMREYYSA----- 98 (155)
Q Consensus 28 ~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g--~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----- 98 (155)
..+..|...+ +.+++.+.+.||..|+++|.++|+.+++| +|+++++|||||||++|++|++..+.......
T Consensus 116 ~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl 195 (508)
T 3fho_A 116 XXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICL 195 (508)
T ss_dssp -----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEE
T ss_pred cccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 3333444433 88899999999999999999999999998 99999999999999999999998875543221
Q ss_pred -------HHHHH-----------------------HHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccc
Q 031654 99 -------RKELR-----------------------ELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 99 -------~~~~~-----------------------~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
.+... ....+++|+|+||+++.+.+..+.+.+.++ +++|+||| |++.+
T Consensus 196 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~-~lIIiDEa-H~~~~ 273 (508)
T 3fho_A 196 APSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDI-KVFVLDEA-DNMLD 273 (508)
T ss_dssp CSCHHHHHHHHHHHHHHSTTSSCCEEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTC-CEEEECCH-HHHTT
T ss_pred ECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCC-CEEEEech-hhhcc
Confidence 11111 112257999999999999999988899999 99999999 99987
Q ss_pred -cccc
Q 031654 149 -MALN 152 (155)
Q Consensus 149 -~gf~ 152 (155)
.+|.
T Consensus 274 ~~~~~ 278 (508)
T 3fho_A 274 QQGLG 278 (508)
T ss_dssp C--CH
T ss_pred cCCcH
Confidence 4543
No 39
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.81 E-value=4.1e-20 Score=154.18 Aligned_cols=103 Identities=20% Similarity=0.208 Sum_probs=82.8
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhh---ch-------------------------
Q 031654 47 YKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYY---SA------------------------- 98 (155)
Q Consensus 47 ~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~---~~------------------------- 98 (155)
++.-.|+|+|.++++.+++|+|+++++|||||||++|++|++..+..... ..
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 45568999999999999999999999999999999999999998876431 11
Q ss_pred -------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCC-CcccccceEEEEccccccccccc
Q 031654 99 -------------RKELRELARWVDNLMATLRRLVNLLERGRV-SLQMIIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 99 -------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~-~l~~l~~~lVlDEa~D~ll~~gf 151 (155)
..+...+..+++|+|+||++|.+++..+.+ .+.++ +++|+||| |++.+.++
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~-~~vViDEa-h~~~~~~~ 147 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIF-TLMIFDEC-HNTTGNHP 147 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTC-SEEEEETG-GGCSTTSH
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccC-CEEEEECC-cccCCcch
Confidence 122233445689999999999999999887 89999 99999999 99987763
No 40
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.9e-20 Score=169.23 Aligned_cols=119 Identities=21% Similarity=0.267 Sum_probs=97.3
Q ss_pred ccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------HH
Q 031654 32 RFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------RK 100 (155)
Q Consensus 32 ~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------~~ 100 (155)
.|..++ +.+...+...++..|+|+|.++|+.+++|+|++++||||||||++|++|++..+....... .+
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q 242 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQ 242 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHH
Confidence 455555 6666667777777899999999999999999999999999999999999998875443222 22
Q ss_pred HHHHHh----------------cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccccccc
Q 031654 101 ELRELA----------------RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMALN 152 (155)
Q Consensus 101 ~~~~l~----------------~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf~ 152 (155)
+.+.+. .+++|+|+||++|.+++.++...+.++ ++|||||| |+|.+.+|.
T Consensus 243 ~~~~l~~~~~~VglltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l-~lVVIDEa-H~l~d~~rg 308 (1108)
T 3l9o_A 243 KYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREV-AWVIFDEV-HYMRDKERG 308 (1108)
T ss_dssp HHHHHHHHTSSEEEECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHE-EEEEEETG-GGTTSHHHH
T ss_pred HHHHHHHHhCCccEEeCccccCCCCCEEEeChHHHHHHHHcCccccccC-CEEEEhhh-hhccccchH
Confidence 333322 248999999999999999988889999 99999999 999998764
No 41
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.79 E-value=1.1e-19 Score=151.24 Aligned_cols=98 Identities=21% Similarity=0.224 Sum_probs=82.4
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhh---ch-----------------------------
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYY---SA----------------------------- 98 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~---~~----------------------------- 98 (155)
.|+|+|.++++.++.|+|+++++|||||||++|++|++..+..... ..
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 6999999999999999999999999999999999999998876431 11
Q ss_pred ---------HHHHHHHhcCCcEEEEChHHHHHHHHcCCC-CcccccceEEEEcccccccccc
Q 031654 99 ---------RKELRELARWVDNLMATLRRLVNLLERGRV-SLQMIIRYLALKEAADQTLDMA 150 (155)
Q Consensus 99 ---------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~-~l~~l~~~lVlDEa~D~ll~~g 150 (155)
..+...+..+++|+|+||++|.+++..+.+ .+.++ +++|+||| |++.+.+
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~-~~vViDEa-h~~~~~~ 143 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVF-TLMIFDEC-HNTSKNH 143 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGC-SEEEETTG-GGCSTTC
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccC-CEEEEECc-cccCCcc
Confidence 111222334589999999999999998877 89999 99999999 9998764
No 42
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.79 E-value=5.3e-20 Score=160.90 Aligned_cols=100 Identities=19% Similarity=0.127 Sum_probs=80.3
Q ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------------------------
Q 031654 47 YKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------------------------- 98 (155)
Q Consensus 47 ~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------------------------- 98 (155)
+|. +|+++|..++|.++.|+ ++.++||||||++|++|++..........
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~ 147 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVG 147 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 464 99999999999999998 99999999999999999986543321111
Q ss_pred ------HHHHHHHhcCCcEEEEChHHH-HHHHHcCC------CCcccccceEEEEccccccc-cccc
Q 031654 99 ------RKELRELARWVDNLMATLRRL-VNLLERGR------VSLQMIIRYLALKEAADQTL-DMAL 151 (155)
Q Consensus 99 ------~~~~~~l~~~~~IlI~TP~~l-~~~l~~~~------~~l~~l~~~lVlDEa~D~ll-~~gf 151 (155)
..+.+.+..+|||+||||++| .++++.+. +.++.+ +++||||| |+|| |+|+
T Consensus 148 ~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l-~~lVlDEa-D~mLiD~a~ 212 (853)
T 2fsf_A 148 INLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKL-HYALVDEV-DSILIDEAR 212 (853)
T ss_dssp ECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSC-CEEEESCH-HHHTTTTTT
T ss_pred EEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCC-cEEEECch-HHHHHhcCc
Confidence 223444555799999999999 78887653 668999 99999999 9999 7664
No 43
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.78 E-value=1.6e-19 Score=133.87 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=78.2
Q ss_pred HhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhh----ch----------HHH-H----
Q 031654 42 NKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYY----SA----------RKE-L---- 102 (155)
Q Consensus 42 ~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~----~~----------~~~-~---- 102 (155)
......+...|+++|.++++.+++|+++++++|||+|||++|+++++..+..... .. ..| .
T Consensus 24 ~~~~~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~ 103 (216)
T 3b6e_A 24 ARASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEF 103 (216)
T ss_dssp HHTCCSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTH
T ss_pred cccCccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHH
Confidence 3334445668999999999999999999999999999999999999887765431 11 112 1
Q ss_pred HHH-----------------------hcCCcEEEEChHHHHHHHHcCC------CCcccccceEEEEcccccccccccc
Q 031654 103 REL-----------------------ARWVDNLMATLRRLVNLLERGR------VSLQMIIRYLALKEAADQTLDMALN 152 (155)
Q Consensus 103 ~~l-----------------------~~~~~IlI~TP~~l~~~l~~~~------~~l~~l~~~lVlDEa~D~ll~~gf~ 152 (155)
..+ ..+++|+|+||+++.+.+.... ..+.++ +++|+||| |++.+.++.
T Consensus 104 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~-~~iIiDEa-h~~~~~~~~ 180 (216)
T 3b6e_A 104 QPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDF-SLIIIDEC-HHTNKEAVY 180 (216)
T ss_dssp HHHHTTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGC-SEEEETTC--------CH
T ss_pred HHHhccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcc-cEEEEECc-hhhccCCcH
Confidence 111 1238999999999999988753 678899 99999999 999877653
No 44
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.78 E-value=4.1e-19 Score=155.74 Aligned_cols=104 Identities=21% Similarity=0.237 Sum_probs=83.3
Q ss_pred HhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhh---c-h----------------------
Q 031654 45 RTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYY---S-A---------------------- 98 (155)
Q Consensus 45 ~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~---~-~---------------------- 98 (155)
..+|+..|+|+|.++++.++.|+|+++++|||||||++|++|++..+..... . .
T Consensus 242 ~~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred hhcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 3558999999999999999999999999999999999999999998876421 1 1
Q ss_pred ---------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCC-CcccccceEEEEcccccccccc
Q 031654 99 ---------------RKELRELARWVDNLMATLRRLVNLLERGRV-SLQMIIRYLALKEAADQTLDMA 150 (155)
Q Consensus 99 ---------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~-~l~~l~~~lVlDEa~D~ll~~g 150 (155)
..+...+..+++|+|+||++|.+++..+.+ .+.++ ++||+||| |++.+.+
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~-~~iViDEa-H~~~~~~ 387 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIF-TLMIFDEC-HNTTGNH 387 (797)
T ss_dssp GGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGC-SEEEETTG-GGCSTTS
T ss_pred cCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccC-CEEEEECc-cccCCCc
Confidence 122334445789999999999999998877 89999 99999999 9988764
No 45
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.78 E-value=2.2e-19 Score=162.36 Aligned_cols=110 Identities=18% Similarity=0.141 Sum_probs=85.3
Q ss_pred HHHhHH-hCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------------------
Q 031654 40 LRNKPR-TYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------------------- 98 (155)
Q Consensus 40 l~~~l~-~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------------------- 98 (155)
+.+.++ .+|| .|||+|.++||.+++|+|++++||||||||++|++|++..+.......
T Consensus 67 ~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 67 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhh
Confidence 334443 4688 699999999999999999999999999999999888877653222111
Q ss_pred ------------------HHHHHHHhcC-CcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccc----------cc-
Q 031654 99 ------------------RKELRELARW-VDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQT----------LD- 148 (155)
Q Consensus 99 ------------------~~~~~~l~~~-~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~l----------l~- 148 (155)
..+...+..+ ++|+|+||++|.+++.. +.++++ ++||+||| |++ ++
T Consensus 146 ~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l-~~lViDEa-H~l~~~~r~~Dr~L~~ 221 (1104)
T 4ddu_A 146 DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRF-DFVFVDDV-DAVLKASRNIDTLLMM 221 (1104)
T ss_dssp CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCC-SEEEESCH-HHHTTSSHHHHHHHHT
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCc-CEEEEeCC-CccccccccchhhhHh
Confidence 2344455555 99999999999888874 677899 99999999 764 45
Q ss_pred cccccC
Q 031654 149 MALNQK 154 (155)
Q Consensus 149 ~gf~~~ 154 (155)
+||.++
T Consensus 222 ~gf~~~ 227 (1104)
T 4ddu_A 222 VGIPEE 227 (1104)
T ss_dssp SSCCHH
T ss_pred cCCCHH
Confidence 788653
No 46
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.78 E-value=3.9e-19 Score=135.19 Aligned_cols=100 Identities=14% Similarity=0.161 Sum_probs=80.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------------HHHHHHHh-------
Q 031654 48 KYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA--------------RKELRELA------- 106 (155)
Q Consensus 48 g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--------------~~~~~~l~------- 106 (155)
+...++++|.++++.+..|++++++||||||||++|.++++..+....... ......+.
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 344579999999999999999999999999999999999988776543311 11112221
Q ss_pred ----------------cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccc-cccccc
Q 031654 107 ----------------RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQT-LDMALN 152 (155)
Q Consensus 107 ----------------~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~l-l~~gf~ 152 (155)
.+++|+|+||++|.+++.. .++++ ++||+||| |++ ++++|.
T Consensus 138 ~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~-~~lVlDEa-h~~~~~~~~~ 195 (235)
T 3llm_A 138 GKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA---GIRGI-SHVIVDEI-HERDINTDFL 195 (235)
T ss_dssp TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH---CCTTC-CEEEECCT-TSCCHHHHHH
T ss_pred CceEEEeechhhccCCCCCeEEEECHHHHHHHHHh---hhcCC-cEEEEECC-ccCCcchHHH
Confidence 3478999999999999976 48999 99999999 997 888775
No 47
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.78 E-value=7.4e-19 Score=164.09 Aligned_cols=110 Identities=17% Similarity=0.110 Sum_probs=87.3
Q ss_pred HHHHHhHHhCCCCCCCHHHHHHHHHHhcC-CcEEEEccCCCCcchhhhhHHHHHHHHhhhch------------------
Q 031654 38 QHLRNKPRTYKYVKPTPVQRHATSILVAG-RDLMACAQTGSRKTTPFCFPIINGIMREYYSA------------------ 98 (155)
Q Consensus 38 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g-~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------------------ 98 (155)
+...+++...+|+.++|+|.++++.++.+ +|++++||||||||++|.+|++..+.......
T Consensus 913 ~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~ 992 (1724)
T 4f92_B 913 NSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDW 992 (1724)
T ss_dssp CHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHH
Confidence 56778888889999999999999999865 78999999999999999999999987654322
Q ss_pred ------------------HHHHHHHhcCCcEEEEChHHHHHHHHcC--CCCcccccceEEEEccccccccc
Q 031654 99 ------------------RKELRELARWVDNLMATLRRLVNLLERG--RVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 99 ------------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~--~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
.........+++|+|+||+++..++++. ...++++ ++||+||+ |.|-+.
T Consensus 993 ~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v-~lvViDE~-H~l~d~ 1061 (1724)
T 4f92_B 993 YEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNI-NLFVVDEV-HLIGGE 1061 (1724)
T ss_dssp HHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSC-SEEEECCG-GGGGST
T ss_pred HHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCccccccccee-eEEEeech-hhcCCC
Confidence 1111122235899999999987777653 3358899 99999999 877653
No 48
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.77 E-value=2.4e-19 Score=161.55 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=80.8
Q ss_pred HHHHHhHH-hCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-------------H----
Q 031654 38 QHLRNKPR-TYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------------R---- 99 (155)
Q Consensus 38 ~~l~~~l~-~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------------~---- 99 (155)
+.+.+.+. .+||. | ++|.++||.++.|+|++++||||||||+ |++|++..+....... .
T Consensus 44 ~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~ 120 (1054)
T 1gku_B 44 KEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIR 120 (1054)
T ss_dssp HHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHH
Confidence 44455554 57999 9 9999999999999999999999999998 9999988776433222 0
Q ss_pred ------------------------H---HHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccc
Q 031654 100 ------------------------K---ELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 100 ------------------------~---~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
. +...+.+ ++|+|+||++|.+++.+ ++++ +++|+||| |+|++
T Consensus 121 ~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l-~~lViDEa-h~~l~ 189 (1054)
T 1gku_B 121 KYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHF-DFIFVDDV-DAILK 189 (1054)
T ss_dssp HHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCC-SEEEESCH-HHHHT
T ss_pred HHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccC-CEEEEeCh-hhhhh
Confidence 1 1222334 89999999999988765 6789 99999999 99999
No 49
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.77 E-value=2.8e-19 Score=156.95 Aligned_cols=105 Identities=23% Similarity=0.238 Sum_probs=82.1
Q ss_pred HHhH-HhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------------------
Q 031654 41 RNKP-RTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA--------------------- 98 (155)
Q Consensus 41 ~~~l-~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--------------------- 98 (155)
.++. +.+|+ +||++|..++|.++.|+ ++.++||+|||++|++|++..........
T Consensus 101 rEa~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~ 177 (922)
T 1nkt_A 101 REAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHR 177 (922)
T ss_dssp HHHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 3444 34698 99999999999999998 99999999999999999975443322111
Q ss_pred -------------HHHHHHHhcCCcEEEEChHHH-HHHHHcC------CCCcccccceEEEEccccccc-ccc
Q 031654 99 -------------RKELRELARWVDNLMATLRRL-VNLLERG------RVSLQMIIRYLALKEAADQTL-DMA 150 (155)
Q Consensus 99 -------------~~~~~~l~~~~~IlI~TP~~l-~~~l~~~------~~~l~~l~~~lVlDEa~D~ll-~~g 150 (155)
..+.+....+|||++|||++| .++++.+ .+.++.+ +++||||| |.|| |.+
T Consensus 178 ~lGLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l-~~lIVDEa-DsmLiDea 248 (922)
T 1nkt_A 178 FLGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGH-HYAIVDEV-DSILIDEA 248 (922)
T ss_dssp HTTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCC-CEEEETTH-HHHHTTGG
T ss_pred hcCCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCC-CEEEEeCh-HHHHHhcC
Confidence 233344445699999999999 7888765 3678899 99999999 9999 654
No 50
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.73 E-value=3.6e-18 Score=152.28 Aligned_cols=103 Identities=21% Similarity=0.243 Sum_probs=81.4
Q ss_pred hCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhh---hc-h-----------------------
Q 031654 46 TYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREY---YS-A----------------------- 98 (155)
Q Consensus 46 ~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~---~~-~----------------------- 98 (155)
-.|+..|+++|.++++.+++|+|+++++|||||||++|++|++..+.... .. .
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 44788999999999999999999999999999999999999998876532 11 1
Q ss_pred --------------HHHHHHHhcCCcEEEEChHHHHHHHHcCCC-CcccccceEEEEcccccccccc
Q 031654 99 --------------RKELRELARWVDNLMATLRRLVNLLERGRV-SLQMIIRYLALKEAADQTLDMA 150 (155)
Q Consensus 99 --------------~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~-~l~~l~~~lVlDEa~D~ll~~g 150 (155)
..+...+..+++|+|+||++|.+++..+.+ .+.++ +++|+||| |++.+.+
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~-~liViDEa-H~~~~~~ 387 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIF-TLMIFDEC-HNTTGNH 387 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGC-SEEEEETG-GGCSTTC
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCC-CEEEEECc-cccCCCc
Confidence 111223334589999999999999998877 79999 99999999 9988753
No 51
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.73 E-value=3.7e-18 Score=149.94 Aligned_cols=101 Identities=22% Similarity=0.195 Sum_probs=80.9
Q ss_pred hCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------------------------
Q 031654 46 TYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA--------------------------- 98 (155)
Q Consensus 46 ~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--------------------------- 98 (155)
.+|+ +||++|..++|.++.|+ +++++||||||++|++|++..........
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv 151 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSV 151 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 4799 99999999999999998 99999999999999999965443322111
Q ss_pred -------HHHHHHHhcCCcEEEEChHHH-HHHHHcCC------CCcc---cccceEEEEccccccc-cccc
Q 031654 99 -------RKELRELARWVDNLMATLRRL-VNLLERGR------VSLQ---MIIRYLALKEAADQTL-DMAL 151 (155)
Q Consensus 99 -------~~~~~~l~~~~~IlI~TP~~l-~~~l~~~~------~~l~---~l~~~lVlDEa~D~ll-~~gf 151 (155)
..+.+....+|||+||||++| .++++.+. +.++ .+ +++||||| |.|| |.+.
T Consensus 152 ~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l-~~lIIDEa-DsmLiDear 220 (997)
T 2ipc_A 152 GVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPL-HYAIIDEV-DSILIDEAR 220 (997)
T ss_dssp EECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSS-CEEEETTH-HHHTTSSTT
T ss_pred EEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCc-ceEEEech-HHHHHhCCC
Confidence 233444455799999999999 88888763 5677 89 99999999 9998 4454
No 52
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.72 E-value=9.9e-18 Score=150.47 Aligned_cols=105 Identities=23% Similarity=0.297 Sum_probs=86.6
Q ss_pred HHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------HHHHHHHh--------
Q 031654 44 PRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------RKELRELA-------- 106 (155)
Q Consensus 44 l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------~~~~~~l~-------- 106 (155)
...++|+ |+++|.++++.+.+|+|+++++|||||||++|.+|++..+....... .+..+.+.
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vgl 158 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGL 158 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEE
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEE
Confidence 4556786 99999999999999999999999999999999999988775432221 23333322
Q ss_pred --------cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccccc
Q 031654 107 --------RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 107 --------~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf 151 (155)
..++|+|+||++|.+++.++...+.++ ++|||||| |+|.+.++
T Consensus 159 ltGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l-~lVViDEa-H~l~d~~r 209 (1010)
T 2xgj_A 159 MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREV-AWVIFDEV-HYMRDKER 209 (1010)
T ss_dssp ECSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGE-EEEEEETG-GGGGCTTT
T ss_pred EeCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcC-CEEEEech-hhhcccch
Confidence 147999999999999999888889999 99999999 99998754
No 53
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.71 E-value=1.1e-17 Score=156.38 Aligned_cols=133 Identities=12% Similarity=0.133 Sum_probs=90.7
Q ss_pred cccccCCcCcccCCCCC---CCCCcccccCCHHHHHhHHhCCCCCCCHHHHHHHHHHhc-CCcEEEEccCCCCcchhhhh
Q 031654 10 VFASENAAPASSSTNTL---SSPAARFAYVPQHLRNKPRTYKYVKPTPVQRHATSILVA-GRDLMACAQTGSRKTTPFCF 85 (155)
Q Consensus 10 ~~~~~~~~~~~~~~~~~---p~~~~~f~~l~~~l~~~l~~~g~~~pt~iQ~~~i~~~l~-g~dvl~~a~TGsGKT~~yll 85 (155)
.+..|+++.+....... ......+.+||+....++. ||++++++|++++|.++. ++|++++||||||||++|.+
T Consensus 37 ~~~~~eei~vp~~~~~~~~~~~~l~~i~~Lp~~~~~~f~--g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l 114 (1724)
T 4f92_B 37 QRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFE--GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALM 114 (1724)
T ss_dssp ECSSEEEEEECCCCCCCCCSSCCCCBTTTSCGGGSTTCT--TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHH
T ss_pred ccCCcceEecCCCCCCCCCCcCCccchHhcCHHHHHhcC--CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHH
Confidence 45556665554322111 1233456667755544432 899999999999998875 68999999999999999999
Q ss_pred HHHHHHHHhhhc----------h----------HHHHHHHh------------------------cCCcEEEEChHHHHH
Q 031654 86 PIINGIMREYYS----------A----------RKELRELA------------------------RWVDNLMATLRRLVN 121 (155)
Q Consensus 86 p~l~~l~~~~~~----------~----------~~~~~~l~------------------------~~~~IlI~TP~~l~~ 121 (155)
|++..+.+.... . .+..+.+. .+++|+|+||+++..
T Consensus 115 ~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~ 194 (1724)
T 4f92_B 115 CMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDI 194 (1724)
T ss_dssp HHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHH
T ss_pred HHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHH
Confidence 999998753211 0 22222211 248999999999755
Q ss_pred HHHcCC--CCcccccceEEEEcccccc
Q 031654 122 LLERGR--VSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 122 ~l~~~~--~~l~~l~~~lVlDEa~D~l 146 (155)
++++.. -.++++ ++||+||+ |.+
T Consensus 195 llr~~~~~~~l~~v-~~vIiDEv-H~l 219 (1724)
T 4f92_B 195 ITRKGGERTYTQLV-RLIILDEI-HLL 219 (1724)
T ss_dssp HTTSSTTHHHHTTE-EEEEETTG-GGG
T ss_pred HHcCCccchhhcCc-CEEEEecc-hhc
Confidence 555432 237889 99999999 644
No 54
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=143.15 Aligned_cols=99 Identities=20% Similarity=0.272 Sum_probs=79.8
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhh----ch-----------HHH-H------------
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYY----SA-----------RKE-L------------ 102 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~----~~-----------~~~-~------------ 102 (155)
.|+|+|.++++.+++|+|+++++|||+|||++|++|++..+..... .. .++ .
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~ 86 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 86 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSC
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCce
Confidence 7899999999999999999999999999999999999998876533 11 222 1
Q ss_pred --------------HHHhcCCcEEEEChHHHHHHH------HcCCCCcccccceEEEEccccccccccc
Q 031654 103 --------------RELARWVDNLMATLRRLVNLL------ERGRVSLQMIIRYLALKEAADQTLDMAL 151 (155)
Q Consensus 103 --------------~~l~~~~~IlI~TP~~l~~~l------~~~~~~l~~l~~~lVlDEa~D~ll~~gf 151 (155)
..+...++|+|+||++|.+.+ ....+.+.++ ++||+||| |++...++
T Consensus 87 v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~-~lvViDEa-H~~~~~~~ 153 (699)
T 4gl2_A 87 VIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDF-SLIIIDEC-HHTNKEAV 153 (699)
T ss_dssp EEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGC-SEEEEESG-GGCBTTBS
T ss_pred EEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccC-cEEEEECc-cccCccch
Confidence 122246899999999999988 4556789999 99999999 99866543
No 55
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.71 E-value=3.2e-17 Score=146.99 Aligned_cols=106 Identities=18% Similarity=0.225 Sum_probs=87.0
Q ss_pred HhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------HHHHHHHhc--------
Q 031654 45 RTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------RKELRELAR-------- 107 (155)
Q Consensus 45 ~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------~~~~~~l~~-------- 107 (155)
..++|+ |+++|.++|+.+++|+|+++++|||||||++|++|+...+....... .++...+..
T Consensus 34 ~~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~ 112 (997)
T 4a4z_A 34 RSWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIG 112 (997)
T ss_dssp CCCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEE
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEE
Confidence 355774 89999999999999999999999999999999999887654332211 344443332
Q ss_pred ----------CCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccccccc
Q 031654 108 ----------WVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMALNQ 153 (155)
Q Consensus 108 ----------~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf~~ 153 (155)
.++|+|+||++|.+++..+...+.++ .+||+||| |++.+++|..
T Consensus 113 ~l~G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l-~lvViDEa-H~l~d~~~g~ 166 (997)
T 4a4z_A 113 LITGDVQINPDANCLIMTTEILRSMLYRGADLIRDV-EFVIFDEV-HYVNDQDRGV 166 (997)
T ss_dssp EECSSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGE-EEEEECCT-TCCCTTCTTC
T ss_pred EEeCCCccCCCCCEEEECHHHHHHHHHhCchhhcCC-CEEEEECc-ccccccchHH
Confidence 37999999999999999888889999 99999999 9999988754
No 56
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.67 E-value=2.1e-16 Score=138.64 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=80.4
Q ss_pred HHHHHhHHhCCCCCCCHHHHHHHHHHhcC------CcEEEEccCCCCcchhhhhHHHHHHHHhhhch-------------
Q 031654 38 QHLRNKPRTYKYVKPTPVQRHATSILVAG------RDLMACAQTGSRKTTPFCFPIINGIMREYYSA------------- 98 (155)
Q Consensus 38 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g------~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------------- 98 (155)
+.+.+.++.++| .||++|.++|+.++++ .|++++++||||||++|++|++..+.......
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~ 434 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHY 434 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHH
Confidence 455566788999 9999999999999876 59999999999999999999998876443221
Q ss_pred --------------------------HHHHHHHhc-CCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccc
Q 031654 99 --------------------------RKELRELAR-WVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 99 --------------------------~~~~~~l~~-~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~l 146 (155)
..+...+.. .++|+|+||+.+.+ .+.+.++ +++|+||+ |++
T Consensus 435 ~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l-~lVVIDEa-Hr~ 502 (780)
T 1gm5_A 435 RRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNL-GLVIIDEQ-HRF 502 (780)
T ss_dssp HHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCC-CEEEEESC-CCC
T ss_pred HHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCC-ceEEeccc-chh
Confidence 122334444 49999999988743 4678999 99999999 986
No 57
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.64 E-value=8.9e-16 Score=124.50 Aligned_cols=96 Identities=18% Similarity=0.111 Sum_probs=78.6
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------------------------------
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------------------------------- 98 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------------------------------- 98 (155)
.|+|+|.++++.++.+ ++++++|||+|||++++++++..+.......
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 87 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALT 87 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEEC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEee
Confidence 6899999999999999 9999999999999999999988765222111
Q ss_pred ----HHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccc
Q 031654 99 ----RKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 99 ----~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
.........+++|+|+||+.+...+..+.+.+.++ +++|+||| |++.+.
T Consensus 88 g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~-~~vIiDEa-H~~~~~ 140 (494)
T 1wp9_A 88 GEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDV-SLIVFDEA-HRAVGN 140 (494)
T ss_dssp SCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSC-SEEEEETG-GGCSTT
T ss_pred CCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhc-eEEEEECC-cccCCC
Confidence 11122223357999999999999999888889999 99999999 998754
No 58
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.57 E-value=9.8e-16 Score=126.72 Aligned_cols=95 Identities=12% Similarity=0.039 Sum_probs=74.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCcE-EEEccCCCCcchhhhhHHHHHHHHhhhch----------HHHHHHHh----------
Q 031654 48 KYVKPTPVQRHATSILVAGRDL-MACAQTGSRKTTPFCFPIINGIMREYYSA----------RKELRELA---------- 106 (155)
Q Consensus 48 g~~~pt~iQ~~~i~~~l~g~dv-l~~a~TGsGKT~~yllp~l~~l~~~~~~~----------~~~~~~l~---------- 106 (155)
|+..|+|+|+ +||.+++|+|+ +++||||||||++|++|++..+....... .+....+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~~v~~~~~~ 79 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGLPIRYQTPA 79 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEEECCTT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCceeeeeecc
Confidence 7899999986 79999999887 99999999999999999998876544322 22222221
Q ss_pred ------cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccc
Q 031654 107 ------RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 107 ------~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~l 146 (155)
.+..|.++|++.+...+.+. ..+.++ +++|+||| |++
T Consensus 80 ~~~~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~-~~iViDEa-h~~ 122 (451)
T 2jlq_A 80 VKSDHTGREIVDLMCHATFTTRLLSS-TRVPNY-NLIVMDEA-HFT 122 (451)
T ss_dssp CSCCCCSSCCEEEEEHHHHHHHHHHC-SCCCCC-SEEEEETT-TCC
T ss_pred ccccCCCCceEEEEChHHHHHHhhCc-ccccCC-CEEEEeCC-ccC
Confidence 12368899999998877654 568899 99999999 976
No 59
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.55 E-value=1.4e-17 Score=142.97 Aligned_cols=110 Identities=12% Similarity=0.003 Sum_probs=75.8
Q ss_pred HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------HHHHHHHhc
Q 031654 38 QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------RKELRELAR 107 (155)
Q Consensus 38 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------~~~~~~l~~ 107 (155)
+.+++++... ...|+|+|+.++|.+++|+|++++||||||||++|++|++..+....... .+....+..
T Consensus 159 ~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~ 237 (618)
T 2whx_A 159 GDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRG 237 (618)
T ss_dssp ---CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT
T ss_pred HHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcC
Confidence 6666666654 58999999999999999999999999999999999999999887643222 233333311
Q ss_pred ----------------CCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccccccc
Q 031654 108 ----------------WVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMALN 152 (155)
Q Consensus 108 ----------------~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf~ 152 (155)
+..+.+.|.+.+...+... ..++++ ++||+||| |+| +++|.
T Consensus 238 ~~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~-~~iViDEa-h~~-~~~~~ 294 (618)
T 2whx_A 238 LPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSS-TRVPNY-NLIVMDEA-HFT-DPCSV 294 (618)
T ss_dssp SCEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHC-SSCCCC-SEEEEEST-TCC-SHHHH
T ss_pred CceeEecccceeccCCCceEEEEChHHHHHHHhcc-ccccCC-eEEEEECC-CCC-CccHH
Confidence 1123333444444333322 358899 99999999 998 76664
No 60
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.54 E-value=9.7e-15 Score=113.38 Aligned_cols=95 Identities=8% Similarity=-0.009 Sum_probs=72.0
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-------------HHHHHHHh-----------
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------------RKELRELA----------- 106 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------------~~~~~~l~----------- 106 (155)
.|+++|.++++.++.+++.++++|||+|||+++++++...+....... .+......
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~ 192 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEe
Confidence 799999999999999989999999999999999988877665432122 12222221
Q ss_pred ----------cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccccc
Q 031654 107 ----------RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMA 150 (155)
Q Consensus 107 ----------~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~g 150 (155)
.+++|+|+||+++.. .....+.++ +++|+||| |++.+..
T Consensus 193 ~~~~~~~~~~~~~~I~v~T~~~l~~---~~~~~~~~~-~~vIiDEa-H~~~~~~ 241 (282)
T 1rif_A 193 GGASKDDKYKNDAPVVVGTWQTVVK---QPKEWFSQF-GMMMNDEC-HLATGKS 241 (282)
T ss_dssp TTCSSTTCCCTTCSEEEECHHHHTT---SCGGGGGGE-EEEEEETG-GGCCHHH
T ss_pred CCCcchhhhccCCcEEEEchHHHHh---hHHHHHhhC-CEEEEECC-ccCCccc
Confidence 358999999988643 233457889 99999999 9987643
No 61
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.50 E-value=3.5e-17 Score=141.61 Aligned_cols=103 Identities=10% Similarity=0.022 Sum_probs=72.6
Q ss_pred HhHHhCCCC-----CCCHHHH-----HHHHHHh------cCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-------
Q 031654 42 NKPRTYKYV-----KPTPVQR-----HATSILV------AGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA------- 98 (155)
Q Consensus 42 ~~l~~~g~~-----~pt~iQ~-----~~i~~~l------~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------- 98 (155)
.+|..+||. .||++|+ ++||.++ +|+|++++||||||||++|++|++..+.......
T Consensus 201 ~~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr 280 (673)
T 2wv9_A 201 IGLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTR 280 (673)
T ss_dssp EEEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSH
T ss_pred EEeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHH
Confidence 366777888 9999999 9999988 8999999999999999999999998876544322
Q ss_pred ---HHHHHHHhc------CCcE-EEEChHHHHHHHHcC--------CCCcccccceEEEEcccccc
Q 031654 99 ---RKELRELAR------WVDN-LMATLRRLVNLLERG--------RVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 99 ---~~~~~~l~~------~~~I-lI~TP~~l~~~l~~~--------~~~l~~l~~~lVlDEa~D~l 146 (155)
.+....+.. ...+ .++||+++++++..+ ...++++ ++||+||| |+|
T Consensus 281 ~La~Q~~~~l~~~~i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l-~lvViDEa-H~~ 344 (673)
T 2wv9_A 281 VVAAEMAEALRGLPVRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNY-NLFVMDEA-HFT 344 (673)
T ss_dssp HHHHHHHHHTTTSCCEECCC---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCC-SEEEEEST-TCC
T ss_pred HHHHHHHHHHhcCCeeeecccccccCCHHHHHHHHHhhhhHHHHhcccccccc-eEEEEeCC-ccc
Confidence 233333321 1111 177887765433322 2368899 99999999 998
No 62
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.49 E-value=1e-13 Score=125.90 Aligned_cols=101 Identities=20% Similarity=0.234 Sum_probs=74.6
Q ss_pred HHHHHhH-HhCCCCCCCHHHHHHHHHHhc----CC--cEEEEccCCCCcchhhhhHHHHHHHHhhhch------------
Q 031654 38 QHLRNKP-RTYKYVKPTPVQRHATSILVA----GR--DLMACAQTGSRKTTPFCFPIINGIMREYYSA------------ 98 (155)
Q Consensus 38 ~~l~~~l-~~~g~~~pt~iQ~~~i~~~l~----g~--dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------------ 98 (155)
+...+.+ ..++|+ |||+|.++|+.++. |+ |++++++||||||++|+++++..+.......
T Consensus 590 ~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~ 668 (1151)
T 2eyq_A 590 REQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQH 668 (1151)
T ss_dssp HHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHH
T ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHH
Confidence 3344444 566886 69999999999986 66 9999999999999999988876544322111
Q ss_pred ---------------------------HHHHHHHhc-CCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccc
Q 031654 99 ---------------------------RKELRELAR-WVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 99 ---------------------------~~~~~~l~~-~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~l 146 (155)
......+.. .++|+|+||+.+ .+.+.+.++ +++|+||+ |++
T Consensus 669 ~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll-----~~~~~~~~l-~lvIiDEa-H~~ 737 (1151)
T 2eyq_A 669 YDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSDVKFKDL-GLLIVDEE-HRF 737 (1151)
T ss_dssp HHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSCCCCSSE-EEEEEESG-GGS
T ss_pred HHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----hCCcccccc-ceEEEech-Hhc
Confidence 122233444 499999999765 245678999 99999999 985
No 63
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.49 E-value=7.3e-14 Score=118.15 Aligned_cols=41 Identities=22% Similarity=0.001 Sum_probs=35.8
Q ss_pred CCCCCCHHHHHHHHH----HhcCCcEEEEccCCCCcchhhhhHHHH
Q 031654 48 KYVKPTPVQRHATSI----LVAGRDLMACAQTGSRKTTPFCFPIIN 89 (155)
Q Consensus 48 g~~~pt~iQ~~~i~~----~l~g~dvl~~a~TGsGKT~~yllp~l~ 89 (155)
|| .|+|.|.+++.. +..|+|+++.||||||||++|++|++.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~ 45 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE 45 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh
Confidence 34 689999997764 468999999999999999999999986
No 64
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.49 E-value=5.3e-14 Score=117.03 Aligned_cols=96 Identities=8% Similarity=-0.006 Sum_probs=73.8
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-------------HHHHHHH----------
Q 031654 49 YVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA-------------RKELREL---------- 105 (155)
Q Consensus 49 ~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~-------------~~~~~~l---------- 105 (155)
...|++.|.++++.+++++|++++++||||||++|++|+...+....... .+.....
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEE
Confidence 34899999999999999999999999999999999999888775433222 1111111
Q ss_pred -----------hcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccc
Q 031654 106 -----------ARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 106 -----------~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
..+++|+|+||+.|. ......+.++ .++|+||| |++...
T Consensus 191 ~~~~~~~~~~~~~~~~I~i~T~~~l~---~~~~~~~~~~-~liIiDE~-H~~~~~ 240 (510)
T 2oca_A 191 IGGGASKDDKYKNDAPVVVGTWQTVV---KQPKEWFSQF-GMMMNDEC-HLATGK 240 (510)
T ss_dssp CGGGCCTTGGGCTTCSEEEEEHHHHT---TSCGGGGGGE-EEEEEETG-GGCCHH
T ss_pred EecCCccccccccCCcEEEEeHHHHh---hchhhhhhcC-CEEEEECC-cCCCcc
Confidence 135799999999754 3344668899 99999999 998753
No 65
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.48 E-value=1.4e-13 Score=113.49 Aligned_cols=107 Identities=12% Similarity=-0.052 Sum_probs=79.6
Q ss_pred HHHHHhHHhCCCC------------------CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch-
Q 031654 38 QHLRNKPRTYKYV------------------KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA- 98 (155)
Q Consensus 38 ~~l~~~l~~~g~~------------------~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~- 98 (155)
+.+.+.|...|+. .|+|.|.++++.++.++++++++|||+|||++|+.++... .....
T Consensus 62 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lv 138 (472)
T 2fwr_A 62 RDIIEYFESNGIEFVDNAADPIPTPYFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLI 138 (472)
T ss_dssp HHHHHHHHHTTCCEEEESCCCCCCCCCCCCCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---CSCEEE
T ss_pred HHHHHHHHHcCCCcccccccccCcccccCCCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEE
Confidence 6677777766654 5899999999999999999999999999999999988753 11110
Q ss_pred --------HHHHHHHh---------------cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccccccc
Q 031654 99 --------RKELRELA---------------RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMALN 152 (155)
Q Consensus 99 --------~~~~~~l~---------------~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf~ 152 (155)
.+....+. ..++|+|+||+.+...+.. ...++ .++|+||| |++.+.+|.
T Consensus 139 l~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~~~~Ivv~T~~~l~~~~~~---~~~~~-~liIvDEa-H~~~~~~~~ 210 (472)
T 2fwr_A 139 VVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYVNAEK---LGNRF-MLLIFDEV-HHLPAESYV 210 (472)
T ss_dssp EESSHHHHHHHHHHGGGGCGGGEEEBSSSCBCCCSEEEEEHHHHHHTHHH---HTTTC-SEEEEETG-GGTTSTTTH
T ss_pred EECCHHHHHHHHHHHHhCCCcceEEECCCcCCcCCEEEEEcHHHHHHHHH---hcCCC-CEEEEECC-cCCCChHHH
Confidence 22222221 1468999999998776542 12458 99999999 999887764
No 66
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.47 E-value=2.1e-13 Score=103.99 Aligned_cols=94 Identities=14% Similarity=-0.038 Sum_probs=69.5
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------HHHHHHHh---------------
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------RKELRELA--------------- 106 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------~~~~~~l~--------------- 106 (155)
.|+++|.+++..++.++++++++|||+|||.+++.++... ..... .+..+.+.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~ 169 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK 169 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 6899999999999999999999999999999998876543 11110 22222222
Q ss_pred cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccccccc
Q 031654 107 RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMALN 152 (155)
Q Consensus 107 ~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf~ 152 (155)
...+|+|+||+.+...... ...++ ++||+||| |++.+.+|.
T Consensus 170 ~~~~i~v~T~~~l~~~~~~---~~~~~-~llIiDEa-H~l~~~~~~ 210 (237)
T 2fz4_A 170 ELKPLTVSTYDSAYVNAEK---LGNRF-MLLIFDEV-HHLPAESYV 210 (237)
T ss_dssp CCCSEEEEEHHHHHHTHHH---HTTTC-SEEEEECS-SCCCTTTHH
T ss_pred CcCCEEEEeHHHHHhhHHH---hcccC-CEEEEECC-ccCCChHHH
Confidence 1468999999998765542 12457 99999999 999877654
No 67
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.44 E-value=1.7e-13 Score=120.22 Aligned_cols=116 Identities=18% Similarity=0.067 Sum_probs=85.8
Q ss_pred CCCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcC-CcEEEEccCCCCcchhhhhHHHHHHHHhh---hc-h--
Q 031654 28 SPAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAG-RDLMACAQTGSRKTTPFCFPIINGIMREY---YS-A-- 98 (155)
Q Consensus 28 ~~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g-~dvl~~a~TGsGKT~~yllp~l~~l~~~~---~~-~-- 98 (155)
.++.+|++++ +.+.+.++..+ ..|+++|+.+|+.++.+ ++++++||||||||+ ++|++....... .. .
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilv 145 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVAC 145 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEe
Confidence 3466799987 99999999888 89999999999988755 689999999999999 577663222111 11 1
Q ss_pred --------HHHHHHHh----------------------cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccc-cc
Q 031654 99 --------RKELRELA----------------------RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQ-TL 147 (155)
Q Consensus 99 --------~~~~~~l~----------------------~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~-ll 147 (155)
.+....+. ...+|+++|||++.+.+..+ ..+.++ ++|||||+ |. ++
T Consensus 146 l~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~-~~lIlDEa-h~R~l 222 (773)
T 2xau_A 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMED-HDLSRY-SCIILDEA-HERTL 222 (773)
T ss_dssp EESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHS-TTCTTE-EEEEECSG-GGCCH
T ss_pred cCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhC-ccccCC-CEEEecCc-ccccc
Confidence 11111111 24689999999999887664 468899 99999999 95 77
Q ss_pred cc
Q 031654 148 DM 149 (155)
Q Consensus 148 ~~ 149 (155)
+.
T Consensus 223 d~ 224 (773)
T 2xau_A 223 AT 224 (773)
T ss_dssp HH
T ss_pred ch
Confidence 63
No 68
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.35 E-value=5.1e-14 Score=121.48 Aligned_cols=91 Identities=14% Similarity=0.029 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch--------HHHH-HHH-----------------h
Q 031654 53 TPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA--------RKEL-REL-----------------A 106 (155)
Q Consensus 53 t~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~--------~~~~-~~l-----------------~ 106 (155)
.+.|..+++.+.+++|++++||||||||.+|.+|+++. ..... ..|. +.+ .
T Consensus 219 ~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~---g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~~~ 295 (666)
T 3o8b_A 219 FTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ---GYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTIT 295 (666)
T ss_dssp CCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT---TCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEEC
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC---CCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEecc
Confidence 34444445555678899999999999999999998762 11111 1111 111 2
Q ss_pred cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccccccc
Q 031654 107 RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMALN 152 (155)
Q Consensus 107 ~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~gf~ 152 (155)
.+++|+|+||++| +....+.++++ ++|||||| +|++++|.
T Consensus 296 ~~~~IlV~TPGrL---l~~~~l~l~~l-~~lVlDEA--H~l~~~~~ 335 (666)
T 3o8b_A 296 TGAPVTYSTYGKF---LADGGCSGGAY-DIIICDEC--HSTDSTTI 335 (666)
T ss_dssp CCCSEEEEEHHHH---HHTTSCCTTSC-SEEEETTT--TCCSHHHH
T ss_pred CCCCEEEECcHHH---HhCCCcccCcc-cEEEEccc--hhcCccHH
Confidence 3689999999997 56778889999 99999999 67788774
No 69
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.34 E-value=8.5e-13 Score=111.44 Aligned_cols=42 Identities=21% Similarity=0.140 Sum_probs=33.1
Q ss_pred CCCCCCCHHHHHHHH----HHhcCCcEEEEccCCCCcchhhhhHHHH
Q 031654 47 YKYVKPTPVQRHATS----ILVAGRDLMACAQTGSRKTTPFCFPIIN 89 (155)
Q Consensus 47 ~g~~~pt~iQ~~~i~----~~l~g~dvl~~a~TGsGKT~~yllp~l~ 89 (155)
.|| .|+|+|.+++. .+..|+++++.||||||||++|++|++.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~ 49 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQ 49 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 477 89999999865 4568899999999999999999999865
No 70
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.34 E-value=2.3e-14 Score=118.31 Aligned_cols=83 Identities=13% Similarity=0.095 Sum_probs=59.7
Q ss_pred HHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------HHHHHHHhc------CCcE-EEEChHHHHHHHH
Q 031654 62 ILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------RKELRELAR------WVDN-LMATLRRLVNLLE 124 (155)
Q Consensus 62 ~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------~~~~~~l~~------~~~I-lI~TP~~l~~~l~ 124 (155)
.+++|+|++++||||||||++|++|+++.+....... .+....+.. ...+ .|+||+++.+++.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v~~~~~~~~~v~Tp~~l~~~l~ 83 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKFHTQAFSAHGSGREVIDAMC 83 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEEEESSCCCCCCCSSCCEEEEE
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCeEEecccceeccCCccceeeec
Confidence 3578999999999999999999999999887654322 333333321 1122 4899987765444
Q ss_pred cC--------CCCcccccceEEEEcccccc
Q 031654 125 RG--------RVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 125 ~~--------~~~l~~l~~~lVlDEa~D~l 146 (155)
.+ ...+.++ +++|+||| |+|
T Consensus 84 ~~~l~~~~~~~~~~~~l-~~vViDEa-h~~ 111 (440)
T 1yks_A 84 HATLTYRMLEPTRVVNW-EVIIMDEA-HFL 111 (440)
T ss_dssp HHHHHHHHTSSSCCCCC-SEEEETTT-TCC
T ss_pred ccchhHhhhCcccccCc-cEEEEECc-ccc
Confidence 33 2348899 99999999 998
No 71
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.32 E-value=9.8e-13 Score=111.52 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHhc----C-CcEEEEccCCCCcchhhhhHHHHHHHHhh-------hch-----------HHHHH----
Q 031654 51 KPTPVQRHATSILVA----G-RDLMACAQTGSRKTTPFCFPIINGIMREY-------YSA-----------RKELR---- 103 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~----g-~dvl~~a~TGsGKT~~yllp~l~~l~~~~-------~~~-----------~~~~~---- 103 (155)
.|+++|.++++.++. | ++++++++||||||++++ +++..+.... ... ..|..
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~-~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAF-QISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHH-HHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 799999999998876 5 679999999999999964 4555554432 111 22222
Q ss_pred -------------HHhcCCcEEEEChHHHHHHHHc----CCCCcccccceEEEEccccccccc
Q 031654 104 -------------ELARWVDNLMATLRRLVNLLER----GRVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 104 -------------~l~~~~~IlI~TP~~l~~~l~~----~~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
....+.+|+|+||++|...... +.+....+ .+||+||| |++...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~-~lvIiDEa-H~~~~~ 317 (590)
T 3h1t_A 257 TPFGDARHKIEGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFF-DLIIIDEC-HRGSAR 317 (590)
T ss_dssp TTTCSSEEECCC--CCSSCSEEEEEGGGC------CCGGGGSCTTSC-SEEEESCC-C-----
T ss_pred HhcchhhhhhhccCCCCCCcEEEEEhhhhccccccccccccCCCCcc-CEEEEECC-cccccc
Confidence 1223689999999999887652 23566788 99999999 999864
No 72
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.29 E-value=1.3e-12 Score=108.19 Aligned_cols=89 Identities=13% Similarity=0.019 Sum_probs=61.6
Q ss_pred HHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------HHHHHHHh----------------cCCcEEEE
Q 031654 61 SILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------RKELRELA----------------RWVDNLMA 114 (155)
Q Consensus 61 ~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------~~~~~~l~----------------~~~~IlI~ 114 (155)
..+.+|+|+++++|||||||++|++|++..+....... .+....+. .+.-+.+.
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~~v~~~~~~~~~~~t~~~~i~~~ 95 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGLPVRYQTSAVQREHQGNEIVDVM 95 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTSCEEECC--------CCCSEEEE
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCceEeEEecccccCCCCCcEEEEE
Confidence 34567899999999999999999999999886543322 22222221 12335566
Q ss_pred ChHHHHHHHHcCCCCcccccceEEEEccccc-----ccccccc
Q 031654 115 TLRRLVNLLERGRVSLQMIIRYLALKEAADQ-----TLDMALN 152 (155)
Q Consensus 115 TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~-----ll~~gf~ 152 (155)
|.+.+...+... ..++++ ++||+||| |+ +++.||.
T Consensus 96 ~~~~l~~~l~~~-~~l~~~-~~iViDEa-H~~~~~~~~~~~~~ 135 (459)
T 2z83_A 96 CHATLTHRLMSP-NRVPNY-NLFVMDEA-HFTDPASIAARGYI 135 (459)
T ss_dssp EHHHHHHHHHSC-C-CCCC-SEEEESST-TCCSHHHHHHHHHH
T ss_pred chHHHHHHhhcc-ccccCC-cEEEEECC-ccCCchhhHHHHHH
Confidence 777665555443 568899 99999999 98 6777764
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.28 E-value=6e-12 Score=113.29 Aligned_cols=110 Identities=18% Similarity=0.099 Sum_probs=79.3
Q ss_pred HHHHHhHHhCC-------CCCCCHHHHHHHHHHhc--------------CCcEEEEccCCCCcchhhhhHHHHHHHHhhh
Q 031654 38 QHLRNKPRTYK-------YVKPTPVQRHATSILVA--------------GRDLMACAQTGSRKTTPFCFPIINGIMREYY 96 (155)
Q Consensus 38 ~~l~~~l~~~g-------~~~pt~iQ~~~i~~~l~--------------g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~ 96 (155)
+.+++.+...- ...|+|+|..|++.++. +++.+++++||||||+++ ++++..+.....
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~ 329 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDF 329 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTT
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCC
Confidence 66666665542 23599999999999875 378999999999999997 676654432111
Q ss_pred --ch-------------------------------HHHHHHHh-cCCcEEEEChHHHHHHHHcCC--CCcccccceEEEE
Q 031654 97 --SA-------------------------------RKELRELA-RWVDNLMATLRRLVNLLERGR--VSLQMIIRYLALK 140 (155)
Q Consensus 97 --~~-------------------------------~~~~~~l~-~~~~IlI~TP~~l~~~l~~~~--~~l~~l~~~lVlD 140 (155)
.. ......+. .+++|+|+||++|..++.... ..++.. .+||+|
T Consensus 330 ~~rvLvlvpr~eL~~Q~~~~f~~f~~~~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~-~lvIiD 408 (1038)
T 2w00_A 330 IDKVFFVVDRKDLDYQTMKEYQRFSPDSVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQ-VVFIFD 408 (1038)
T ss_dssp CCEEEEEECGGGCCHHHHHHHHTTSTTCSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSC-EEEEEE
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhcccccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccc-cEEEEE
Confidence 11 23333443 468999999999999887542 246678 899999
Q ss_pred cccccccccc
Q 031654 141 EAADQTLDMA 150 (155)
Q Consensus 141 Ea~D~ll~~g 150 (155)
|| |++...+
T Consensus 409 EA-Hrs~~~~ 417 (1038)
T 2w00_A 409 EC-HRSQFGE 417 (1038)
T ss_dssp SC-CTTHHHH
T ss_pred cc-chhcchH
Confidence 99 9987543
No 74
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.13 E-value=5.1e-11 Score=97.94 Aligned_cols=79 Identities=13% Similarity=0.023 Sum_probs=53.7
Q ss_pred cCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------HHHHHHHhc-----------------CCcEEEEChHH
Q 031654 65 AGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------RKELRELAR-----------------WVDNLMATLRR 118 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------~~~~~~l~~-----------------~~~IlI~TP~~ 118 (155)
+|+|+++++|||||||++|++|+++.+....... ..|...... +.-+.+.|.+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRGEPIRYMTPAVQSERTGNEIVDFMCHST 80 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEEEC---------CCCSEEEEEHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhCCCeEEEEecCccccCCCCceEEEEchHH
Confidence 4789999999999999999999997776544322 222222221 22344445555
Q ss_pred HHHHHHcCCCCcccccceEEEEcccccc
Q 031654 119 LVNLLERGRVSLQMIIRYLALKEAADQT 146 (155)
Q Consensus 119 l~~~l~~~~~~l~~l~~~lVlDEa~D~l 146 (155)
+...+.. ...+.++ +++|+||| |++
T Consensus 81 l~~~l~~-~~~~~~l-~~vViDEa-H~~ 105 (431)
T 2v6i_A 81 FTMKLLQ-GVRVPNY-NLYIMDEA-HFL 105 (431)
T ss_dssp HHHHHHH-TCCCCCC-SEEEEEST-TCC
T ss_pred HHHHHhc-CccccCC-CEEEEeCC-ccC
Confidence 5444444 4558899 99999999 987
No 75
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.01 E-value=2.3e-11 Score=105.34 Aligned_cols=105 Identities=10% Similarity=-0.026 Sum_probs=63.5
Q ss_pred HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------HHHHHHHhc-
Q 031654 38 QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------RKELRELAR- 107 (155)
Q Consensus 38 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------~~~~~~l~~- 107 (155)
.+-++++..++ .| .|.......++|+|++++||||||||+ +++..+....... .+....+..
T Consensus 131 ~d~l~~i~dl~--~p--~~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~ 202 (677)
T 3rc3_A 131 KDDLRKISDLR--IP--PNWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAA 202 (677)
T ss_dssp HHHHHHHTBCC--CG--GGGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHSSSEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcc--Ch--hhhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhcCCeEEEeCHHHHHHHHHHHHHhc
Confidence 44445554443 33 333444566799999999999999998 4444444432211 222222221
Q ss_pred ---------CCcEEEEChHHHHHHHHcC--CC-CcccccceEEEEcccccccccccc
Q 031654 108 ---------WVDNLMATLRRLVNLLERG--RV-SLQMIIRYLALKEAADQTLDMALN 152 (155)
Q Consensus 108 ---------~~~IlI~TP~~l~~~l~~~--~~-~l~~l~~~lVlDEa~D~ll~~gf~ 152 (155)
+.+++++||+++.+++... .. ....+ +++|+||| |+|++.+|.
T Consensus 203 g~~v~lltG~~~~iv~TpGr~~~il~~T~e~~~l~~~v-~lvVIDEa-H~l~d~~~g 257 (677)
T 3rc3_A 203 GVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPY-EVAVIDEI-QMIRDPARG 257 (677)
T ss_dssp TCCEEEECSSCEECCSTTCCCCSEEEEEGGGCCSSSCE-EEEEECSG-GGGGCTTTH
T ss_pred CCcEEEEECCeeEEecCCCcccceeEecHhHhhhcccC-CEEEEecc-eecCCccch
Confidence 3455666776655555432 12 24677 99999999 999988764
No 76
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.00 E-value=5.6e-10 Score=92.47 Aligned_cols=95 Identities=18% Similarity=0.168 Sum_probs=65.5
Q ss_pred CCCCHHHHHHHHHH----hcCCcEEEEccCCCCcchhhhhHHHHHHHHhhhc-h-------------HHHHHHHh-----
Q 031654 50 VKPTPVQRHATSIL----VAGRDLMACAQTGSRKTTPFCFPIINGIMREYYS-A-------------RKELRELA----- 106 (155)
Q Consensus 50 ~~pt~iQ~~~i~~~----l~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~-~-------------~~~~~~l~----- 106 (155)
..|+|+|.+++..+ ..|++.+++.+||+|||+..+. ++..+...... . ..+.....
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~~~~~~~LIv~P~~l~~qw~~e~~~~~~~~~v 114 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKENELTPSLVICPLSVLKNWEEELSKFAPHLRF 114 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHTTCCSSEEEEECSTTHHHHHHHHHHHCTTSCE
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhcCCCCCEEEEccHHHHHHHHHHHHHHCCCceE
Confidence 37999999999876 4678999999999999999654 44444332211 1 22222221
Q ss_pred ------------cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccccc
Q 031654 107 ------------RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDMA 150 (155)
Q Consensus 107 ------------~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~g 150 (155)
..++|+|+|++.+..... +..... .++|+||| |++-+.+
T Consensus 115 ~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~---l~~~~~-~~vIvDEa-H~~kn~~ 165 (500)
T 1z63_A 115 AVFHEDRSKIKLEDYDIILTTYAVLLRDTR---LKEVEW-KYIVIDEA-QNIKNPQ 165 (500)
T ss_dssp EECSSSTTSCCGGGSSEEEEEHHHHTTCHH---HHTCCE-EEEEEETG-GGGSCTT
T ss_pred EEEecCchhccccCCcEEEeeHHHHhccch---hcCCCc-CEEEEeCc-cccCCHh
Confidence 246899999999865433 333456 88999999 9987643
No 77
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.72 E-value=1.1e-08 Score=91.63 Aligned_cols=98 Identities=12% Similarity=0.033 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHhcC--CcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------HHHHHHH-------------
Q 031654 51 KPTPVQRHATSILVAG--RDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------RKELREL------------- 105 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g--~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------~~~~~~l------------- 105 (155)
.|+|+|..++..++.. .+++++.+||+|||+.++..+...+....... .+....+
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E~~~~f~l~v~v~~~ 232 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDD 232 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHHHHHHSCCCCEECCH
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHHHHHHHHHHHhCCCEEEEcc
Confidence 6899999999988764 58999999999999999877766554433111 1111111
Q ss_pred -------------hcCCcEEEEChHHHHHHHHc-CCCCcccccceEEEEcccccccccc
Q 031654 106 -------------ARWVDNLMATLRRLVNLLER-GRVSLQMIIRYLALKEAADQTLDMA 150 (155)
Q Consensus 106 -------------~~~~~IlI~TP~~l~~~l~~-~~~~l~~l~~~lVlDEa~D~ll~~g 150 (155)
....+|+|+|++.+...... ..+...+. .+||+||| |++-+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~-dlVIvDEA-H~~kn~~ 289 (968)
T 3dmq_A 233 ERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEW-DLLVVDEA-HHLVWSE 289 (968)
T ss_dssp HHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCC-CEEEECCS-SCCCCBT
T ss_pred chhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCC-CEEEehhh-HhhcCCC
Confidence 12469999999886532111 11334577 89999999 9986544
No 78
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.68 E-value=1.2e-08 Score=87.62 Aligned_cols=43 Identities=19% Similarity=0.012 Sum_probs=36.4
Q ss_pred CCCHHHHHHHH----HHhcCCcEEEEccCCCCcchhhhhHHHHHHHH
Q 031654 51 KPTPVQRHATS----ILVAGRDLMACAQTGSRKTTPFCFPIINGIMR 93 (155)
Q Consensus 51 ~pt~iQ~~~i~----~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~ 93 (155)
.|+|.|.+.+. .+.+|+|+++.||||||||++|++|++..+..
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~ 49 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE 49 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 67999998875 55689999999999999999999999988753
No 79
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.54 E-value=4.4e-08 Score=83.84 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHhcCCcEEEEccCCCCcc--hhhhhHHHHHH
Q 031654 53 TPVQRHATSILVAGRDLMACAQTGSRKT--TPFCFPIINGI 91 (155)
Q Consensus 53 t~iQ~~~i~~~l~g~dvl~~a~TGsGKT--~~yllp~l~~l 91 (155)
++.|+.+++.++.+++++++|++||||| ++++++.+..+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~ 191 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQM 191 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999 77777776543
No 80
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.49 E-value=2.6e-07 Score=81.18 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHh----cCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------------------------
Q 031654 51 KPTPVQRHATSILV----AGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------------------------- 98 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l----~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------------------------- 98 (155)
.++|.|..++..++ .|++.+++.++|+|||+..+..+...+.......
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~v~ 315 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCI 315 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHHSTTCCEE
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHHCCCceEE
Confidence 67899999998665 8899999999999999987655544333221111
Q ss_pred --------HHHHHH------------HhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccccccc
Q 031654 99 --------RKELRE------------LARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 99 --------~~~~~~------------l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
....+. ....++|+|+|++.+...... +.-... .+||+||| |++-+
T Consensus 316 ~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w-~~vIvDEa-H~lkn 381 (800)
T 3mwy_W 316 CYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKW-QFMAVDEA-HRLKN 381 (800)
T ss_dssp ECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEE-EEEEETTG-GGGCC
T ss_pred EEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCc-ceeehhhh-hhhcC
Confidence 111111 112578999999998654321 122246 78999999 99854
No 81
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.43 E-value=7e-07 Score=76.73 Aligned_cols=95 Identities=13% Similarity=0.024 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHh---------cCCcEEEEccCCCCcchhhhhHHHHHHHHhhh---c---h------------HHH--
Q 031654 51 KPTPVQRHATSILV---------AGRDLMACAQTGSRKTTPFCFPIINGIMREYY---S---A------------RKE-- 101 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l---------~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~---~---~------------~~~-- 101 (155)
.+.|+|.+++..+. .++..++..++|+|||+..+..+...+..... . . ..+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E~~ 134 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVG 134 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHHHH
Confidence 68999999998774 45789999999999999876665554432210 0 0 000
Q ss_pred -----------------------HHHHh------cCCcEEEEChHHHHHHHHcCCCCcccccceEEEEccccccccc
Q 031654 102 -----------------------LRELA------RWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 102 -----------------------~~~l~------~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
..... ..++|+|+|++.+.... ..+..... .++|+||| |++-+.
T Consensus 135 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~-~~vI~DEa-H~ikn~ 207 (644)
T 1z3i_X 135 KWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKV-GLVICDEG-HRLKNS 207 (644)
T ss_dssp HHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCC-CEEEETTG-GGCCTT
T ss_pred HHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCc-cEEEEECc-eecCCh
Confidence 11111 13789999999876542 33444567 88999999 998543
No 82
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.13 E-value=2.4e-06 Score=74.47 Aligned_cols=45 Identities=29% Similarity=0.305 Sum_probs=38.1
Q ss_pred hCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHH
Q 031654 46 TYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMR 93 (155)
Q Consensus 46 ~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~ 93 (155)
.+|. +|+++|....-.+..|+ ++...||+|||+++.+|++-....
T Consensus 71 ~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~ 115 (822)
T 3jux_A 71 TLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI 115 (822)
T ss_dssp HTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT
T ss_pred HhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc
Confidence 3355 78999999999999888 889999999999999998755443
No 83
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.86 E-value=9.9e-06 Score=69.53 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHhcCCc-EEEEccCCCCcchhh
Q 031654 51 KPTPVQRHATSILVAGRD-LMACAQTGSRKTTPF 83 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~d-vl~~a~TGsGKT~~y 83 (155)
.+++-|.+|+..++..++ .+|+||+|||||.+-
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti 222 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTV 222 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHH
Confidence 468899999999988776 688999999999864
No 84
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.84 E-value=1.1e-05 Score=66.57 Aligned_cols=48 Identities=19% Similarity=0.192 Sum_probs=34.2
Q ss_pred HHhCCCCCCCHHHHHHHHHHhcC-----CcEEEEccCCCCcchhhhhHHHHHHH
Q 031654 44 PRTYKYVKPTPVQRHATSILVAG-----RDLMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 44 l~~~g~~~pt~iQ~~~i~~~l~g-----~dvl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
..-+.|..+++-|+.++..++.. ..+++.|+.|||||... ..++..+.
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~ 70 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALI 70 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHH
Confidence 34567899999999999877543 38999999999999643 33444443
No 85
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.73 E-value=2.2e-05 Score=66.76 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchh
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
.+++.|..++..++.++.+++.|++|||||..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~ 220 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT 220 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH
Confidence 47899999999999999999999999999975
No 86
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.08 E-value=0.001 Score=47.41 Aligned_cols=31 Identities=23% Similarity=0.187 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHh---------cCCcEEEEccCCCCcchhh
Q 031654 53 TPVQRHATSILV---------AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 53 t~iQ~~~i~~~l---------~g~dvl~~a~TGsGKT~~y 83 (155)
++.|..++..+. .|+.+++.+|+|+|||...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 445555554442 4789999999999999753
No 87
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.02 E-value=0.00055 Score=50.21 Aligned_cols=68 Identities=7% Similarity=-0.004 Sum_probs=38.8
Q ss_pred cCCcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHcCCCCcccccceEEEEcccc
Q 031654 65 AGRDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLERGRVSLQMIIRYLALKEAAD 144 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D 144 (155)
.++.+++.||+|+|||.... .+...+. ..+..++..+...+...+....-.+... ..+||||+ |
T Consensus 51 ~~~~~ll~G~~G~GKT~la~-~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vliiDe~-~ 114 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH-AACARAN-------------ELERRSFYIPLGIHASISTALLEGLEQF-DLICIDDV-D 114 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH-HHHHHHH-------------HTTCCEEEEEGGGGGGSCGGGGTTGGGS-SEEEEETG-G
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHH-------------HcCCeEEEEEHHHHHHHHHHHHHhccCC-CEEEEecc-c
Confidence 46899999999999998532 1111111 1134555555433322211111124556 78999999 9
Q ss_pred cccc
Q 031654 145 QTLD 148 (155)
Q Consensus 145 ~ll~ 148 (155)
.+..
T Consensus 115 ~~~~ 118 (242)
T 3bos_A 115 AVAG 118 (242)
T ss_dssp GGTT
T ss_pred cccC
Confidence 8754
No 88
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.70 E-value=0.00074 Score=46.67 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=17.2
Q ss_pred HhcCCcEEEEccCCCCcchh
Q 031654 63 LVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 63 ~l~g~dvl~~a~TGsGKT~~ 82 (155)
...+.++++.+++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 45668999999999999975
No 89
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.68 E-value=0.0027 Score=54.26 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHH
Q 031654 50 VKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 50 ~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
..+++-|..|+..++.+.-+++.||+|||||.... .++..+.
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~ 220 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLA 220 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHH
Confidence 35689999999999988889999999999998642 3344443
No 90
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.68 E-value=0.01 Score=46.28 Aligned_cols=66 Identities=9% Similarity=0.146 Sum_probs=38.5
Q ss_pred CCcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHHHcCC--------C-Ccccccce
Q 031654 66 GRDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLLERGR--------V-SLQMIIRY 136 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l~~~~--------~-~l~~l~~~ 136 (155)
++++++.||+|+|||.... .+...+. ...+..++..+...+...+.... + .+.+. .+
T Consensus 152 ~~~lll~G~~GtGKT~La~-aia~~~~------------~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~l 217 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA-AMAHELS------------EKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNV-PV 217 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHHHHH------------HHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHTS-SE
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHH------------HhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcCC-CE
Confidence 6899999999999997532 2222221 02345565444444444443211 1 14567 89
Q ss_pred EEEEcccccc
Q 031654 137 LALKEAADQT 146 (155)
Q Consensus 137 lVlDEa~D~l 146 (155)
|||||+ +..
T Consensus 218 LiiDdi-g~~ 226 (308)
T 2qgz_A 218 LILDDI-GAE 226 (308)
T ss_dssp EEEETC-CC-
T ss_pred EEEcCC-CCC
Confidence 999999 754
No 91
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.006 Score=48.18 Aligned_cols=19 Identities=11% Similarity=-0.001 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.+.++++.||+|+|||+..
T Consensus 44 ~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp CCCEEEEECCCSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3468999999999999864
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.54 E-value=0.011 Score=42.49 Aligned_cols=16 Identities=25% Similarity=0.183 Sum_probs=14.8
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
+.+++.+|+|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999985
No 93
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.46 E-value=0.0028 Score=44.40 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCcchh
Q 031654 66 GRDLMACAQTGSRKTTP 82 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~ 82 (155)
+.++++.+|+|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46899999999999975
No 94
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.45 E-value=0.0046 Score=43.20 Aligned_cols=18 Identities=17% Similarity=0.171 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
++.+++.||+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 368999999999999753
No 95
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.0052 Score=54.17 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhh
Q 031654 50 VKPTPVQRHATSILVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 50 ~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~y 83 (155)
..+++-|..|+..++.+.-+++.||+|||||...
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i 392 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS 392 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 3568999999999988878899999999999764
No 96
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.31 E-value=0.0061 Score=53.74 Aligned_cols=41 Identities=15% Similarity=0.057 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHH
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
.+++-|..|+..++.+.-.++.||+|||||... ..++..+.
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~ 396 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLA 396 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHH
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHH
Confidence 468999999999998888999999999999864 33444444
No 97
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.12 E-value=0.0063 Score=46.08 Aligned_cols=17 Identities=18% Similarity=0.018 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
..+++.+|+|+|||...
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999853
No 98
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.09 E-value=0.0075 Score=47.36 Aligned_cols=94 Identities=17% Similarity=0.109 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHh----cCC---cEEEEccCCCCcchhhhhHHHHHHHHhhhc----h----HHHHHHHhcCCcEEEECh
Q 031654 52 PTPVQRHATSILV----AGR---DLMACAQTGSRKTTPFCFPIINGIMREYYS----A----RKELRELARWVDNLMATL 116 (155)
Q Consensus 52 pt~iQ~~~i~~~l----~g~---dvl~~a~TGsGKT~~yllp~l~~l~~~~~~----~----~~~~~~l~~~~~IlI~TP 116 (155)
.+|+|..++..+. +|+ -+++.||.|+|||.... .+...+...... + ......-...+++..-.|
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 81 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAP 81 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEec
Confidence 3677777776553 443 48999999999997643 222333221110 0 111111223467776655
Q ss_pred H---------HHHHHHHcCC--CCcccccceEEEEcccccccc
Q 031654 117 R---------RLVNLLERGR--VSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 117 ~---------~l~~~l~~~~--~~l~~l~~~lVlDEa~D~ll~ 148 (155)
+ .+.+++..-. -....- +.+||||| |.|-.
T Consensus 82 ~~~~~~~~i~~ir~l~~~~~~~~~~~~~-kvviIdea-d~l~~ 122 (334)
T 1a5t_A 82 EKGKNTLGVDAVREVTEKLNEHARLGGA-KVVWVTDA-ALLTD 122 (334)
T ss_dssp CTTCSSBCHHHHHHHHHHTTSCCTTSSC-EEEEESCG-GGBCH
T ss_pred cccCCCCCHHHHHHHHHHHhhccccCCc-EEEEECch-hhcCH
Confidence 3 2223332211 123456 88999999 98854
No 99
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.00 E-value=0.0062 Score=47.71 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.+..+++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3578999999999999853
No 100
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.00 E-value=0.0078 Score=46.71 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=37.6
Q ss_pred CCcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHHHH----HcCCC-----Ccccccce
Q 031654 66 GRDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVNLL----ERGRV-----SLQMIIRY 136 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~~l----~~~~~-----~l~~l~~~ 136 (155)
+..+++.||+|+|||...- .+...+.. .+..++..+...+...+ ..... .+.+. .+
T Consensus 37 ~~~lll~G~~GtGKT~la~-~i~~~~~~-------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 101 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ-AAGNEAKK-------------RGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSV-DL 101 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH-HHHHHHHH-------------TTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTC-SE
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHH-------------CCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCC-CE
Confidence 4689999999999997532 22222211 13445555544432221 11110 12346 78
Q ss_pred EEEEcccccccc
Q 031654 137 LALKEAADQTLD 148 (155)
Q Consensus 137 lVlDEa~D~ll~ 148 (155)
|+|||+ |.+..
T Consensus 102 L~iDEi-~~l~~ 112 (324)
T 1l8q_A 102 LLLDDV-QFLSG 112 (324)
T ss_dssp EEEECG-GGGTT
T ss_pred EEEcCc-ccccC
Confidence 999999 98763
No 101
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.97 E-value=0.0094 Score=45.66 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
.++++.||+|+|||...
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999854
No 102
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.88 E-value=0.012 Score=45.51 Aligned_cols=51 Identities=10% Similarity=0.156 Sum_probs=29.4
Q ss_pred CcccccCC--HHHHHhHHhCCCCCCCHHHHH-HHHH--HhcCCcEEEEccCCCCcchhh
Q 031654 30 AARFAYVP--QHLRNKPRTYKYVKPTPVQRH-ATSI--LVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 30 ~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~-~i~~--~l~g~dvl~~a~TGsGKT~~y 83 (155)
-.+|+++. +..++.|.+.- . .|.... .+.. +..++.+++.+|+|+|||+..
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v-~--~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELV-Q--YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHH-H--HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH-H--HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 35788887 66666665420 0 011100 0001 124578999999999999853
No 103
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.81 E-value=0.053 Score=42.12 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=29.4
Q ss_pred CcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHh-----cCCcEEEEccCCCCcchhh
Q 031654 30 AARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILV-----AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 30 ~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l-----~g~dvl~~a~TGsGKT~~y 83 (155)
-.+|+++. +..++.|.+.-. .|. ..|.++ ..+.+++.+|+|+|||...
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 35788887 777777665310 011 111111 1357999999999999853
No 104
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.75 E-value=0.02 Score=48.39 Aligned_cols=41 Identities=24% Similarity=0.180 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHH
Q 031654 50 VKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 50 ~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
..+++-|.+++. ..+..++|.|+.|||||.+-+--+...+.
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~ 48 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMS 48 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence 468999999996 33578999999999999876544444443
No 105
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.72 E-value=0.0077 Score=47.30 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
++.+++.||+|+|||...
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 368999999999999853
No 106
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.65 E-value=0.05 Score=38.64 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=14.2
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
..+++.||+|+|||..
T Consensus 39 ~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 39 PHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999974
No 107
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.59 E-value=0.12 Score=39.21 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.+.++++.||+|+|||...
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999753
No 108
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.55 E-value=0.036 Score=42.97 Aligned_cols=59 Identities=19% Similarity=0.070 Sum_probs=34.8
Q ss_pred CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEE-----EChHHHHHHHHcCCCCcccccceEEEEc
Q 031654 67 RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLM-----ATLRRLVNLLERGRVSLQMIIRYLALKE 141 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI-----~TP~~l~~~l~~~~~~l~~l~~~lVlDE 141 (155)
.++++.+|+|+|||...- .+.. .+ ..+-+.+ ..++.+...+.. ...- ..|+|||
T Consensus 56 ~~vll~G~~GtGKT~la~-----~ia~----------~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~vl~lDE 114 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN-----IISY----------EM-SANIKTTAAPMIEKSGDLAAILTN----LSEG-DILFIDE 114 (338)
T ss_dssp CCEEEECSTTSSHHHHHH-----HHHH----------HT-TCCEEEEEGGGCCSHHHHHHHHHT----CCTT-CEEEEET
T ss_pred CeEEEECcCCCCHHHHHH-----HHHH----------Hh-CCCeEEecchhccchhHHHHHHHh----ccCC-CEEEEec
Confidence 589999999999998532 1111 11 1111111 234555555543 3355 6899999
Q ss_pred cccccc
Q 031654 142 AADQTL 147 (155)
Q Consensus 142 a~D~ll 147 (155)
+ |.|-
T Consensus 115 i-~~l~ 119 (338)
T 3pfi_A 115 I-HRLS 119 (338)
T ss_dssp G-GGCC
T ss_pred h-hhcC
Confidence 9 9874
No 109
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.43 E-value=0.026 Score=43.37 Aligned_cols=18 Identities=28% Similarity=0.163 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
...+++.||+|+|||...
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 378999999999999753
No 110
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.35 E-value=0.027 Score=46.04 Aligned_cols=69 Identities=14% Similarity=0.191 Sum_probs=39.0
Q ss_pred CCcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEEChHHHHH----HHHcCCC-----Ccc-cccc
Q 031654 66 GRDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATLRRLVN----LLERGRV-----SLQ-MIIR 135 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP~~l~~----~l~~~~~-----~l~-~l~~ 135 (155)
+..+++.||+|+|||...- .+...+.. ...+..++..+...+.. .+..... .+. .. .
T Consensus 130 ~~~lll~Gp~G~GKTtLa~-aia~~l~~-----------~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 196 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ-SIGNYVVQ-----------NEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKV-D 196 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH-HHHHHHHH-----------HCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTC-S
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH-----------hCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCC-C
Confidence 3689999999999998532 22222211 11234555555444322 2222211 123 56 7
Q ss_pred eEEEEcccccccc
Q 031654 136 YLALKEAADQTLD 148 (155)
Q Consensus 136 ~lVlDEa~D~ll~ 148 (155)
.|+|||+ |.+.+
T Consensus 197 vL~IDEi-~~l~~ 208 (440)
T 2z4s_A 197 ILLIDDV-QFLIG 208 (440)
T ss_dssp EEEEECG-GGGSS
T ss_pred EEEEeCc-ccccC
Confidence 9999999 98875
No 111
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.32 E-value=0.027 Score=43.43 Aligned_cols=16 Identities=19% Similarity=0.011 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
+.+++.+|+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5789999999999985
No 112
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.01 E-value=0.021 Score=44.50 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.+..+++.||+|+|||...
T Consensus 44 ~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCEEEEECTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3578999999999999853
No 113
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.93 E-value=0.064 Score=46.40 Aligned_cols=74 Identities=19% Similarity=0.159 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHhcC--CcEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHhcCCcEEEECh-----HHHHHHH
Q 031654 51 KPTPVQRHATSILVAG--RDLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELARWVDNLMATL-----RRLVNLL 123 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g--~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~~~~~IlI~TP-----~~l~~~l 123 (155)
.+|.-|++++..++.- .-.++.|+-|.|||.+.-+.+- .+. ..++|+.| ..|..+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a---------------~~~--~~~~vtAP~~~a~~~l~~~~ 237 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS---------------RIA--GRAIVTAPAKASTDVLAQFA 237 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH---------------HSS--SCEEEECSSCCSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH---------------HHH--hCcEEECCCHHHHHHHHHHh
Confidence 6799999999988763 3478899999999965433321 111 13577777 3344443
Q ss_pred HcC--CC-------CcccccceEEEEcc
Q 031654 124 ERG--RV-------SLQMIIRYLALKEA 142 (155)
Q Consensus 124 ~~~--~~-------~l~~l~~~lVlDEa 142 (155)
... .+ .+... ++||||||
T Consensus 238 ~~~i~~~~Pd~~~~~~~~~-dlliVDEA 264 (671)
T 2zpa_A 238 GEKFRFIAPDALLASDEQA-DWLVVDEA 264 (671)
T ss_dssp GGGCCBCCHHHHHHSCCCC-SEEEEETG
T ss_pred hCCeEEeCchhhhhCcccC-CEEEEEch
Confidence 321 11 23447 89999999
No 114
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.80 E-value=0.073 Score=41.96 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.+..+++.+|+|+|||...
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999853
No 115
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.77 E-value=0.015 Score=41.94 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCCcchhhh
Q 031654 65 AGRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yl 84 (155)
.|+=.++.++.|+|||...+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELL 21 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHH
Confidence 45667889999999998753
No 116
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.75 E-value=0.12 Score=39.42 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=14.6
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
..+++.||+|+|||...
T Consensus 47 ~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 36999999999999753
No 117
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.22 E-value=0.055 Score=42.37 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=14.4
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999864
No 118
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.21 E-value=0.049 Score=44.51 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
.+.+++.||+|+|||+..
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 368999999999999853
No 119
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.10 E-value=0.023 Score=45.01 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
+.+++.+|+|+|||+..
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 57999999999999853
No 120
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.08 E-value=0.034 Score=38.11 Aligned_cols=20 Identities=10% Similarity=0.059 Sum_probs=17.2
Q ss_pred hcCCcEEEEccCCCCcchhh
Q 031654 64 VAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~y 83 (155)
..+.++++.+++|||||...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45689999999999999864
No 121
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.94 E-value=0.045 Score=40.93 Aligned_cols=77 Identities=6% Similarity=-0.010 Sum_probs=42.7
Q ss_pred cCCcEEEEccCCCCcchhhhhHHHHHHHHhhhch------HHHHH--HHhc-----CCcEEEEChHHHHHHHHcCCCCcc
Q 031654 65 AGRDLMACAQTGSRKTTPFCFPIINGIMREYYSA------RKELR--ELAR-----WVDNLMATLRRLVNLLERGRVSLQ 131 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~------~~~~~--~l~~-----~~~IlI~TP~~l~~~l~~~~~~l~ 131 (155)
.|.=+++.+++|+|||.+.+ -++.++....... .+... .+.. ...+-+.+...+.+.+.... .-.
T Consensus 11 ~G~i~litG~mGsGKTT~ll-~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~-~~~ 88 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELI-RRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNS-FND 88 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHH-HHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT-SCT
T ss_pred CcEEEEEECCCCCcHHHHHH-HHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHh-hCC
Confidence 45667888999999998753 3333333322111 11000 1111 12455666677777665432 223
Q ss_pred cccceEEEEccccc
Q 031654 132 MIIRYLALKEAADQ 145 (155)
Q Consensus 132 ~l~~~lVlDEa~D~ 145 (155)
.. .+|||||| ..
T Consensus 89 ~~-dvViIDEa-Q~ 100 (223)
T 2b8t_A 89 ET-KVIGIDEV-QF 100 (223)
T ss_dssp TC-CEEEECSG-GG
T ss_pred CC-CEEEEecC-cc
Confidence 46 89999999 54
No 122
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=93.93 E-value=0.11 Score=44.44 Aligned_cols=41 Identities=24% Similarity=0.189 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHH
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMR 93 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~ 93 (155)
.+++-|.+++.. .+..++|.|+.|||||.+-+--+...+..
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~ 42 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRG 42 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHh
Confidence 478999999864 36789999999999998765445444443
No 123
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.62 E-value=0.071 Score=41.10 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=12.1
Q ss_pred cccceEEEEccccccc
Q 031654 132 MIIRYLALKEAADQTL 147 (155)
Q Consensus 132 ~l~~~lVlDEa~D~ll 147 (155)
.. +.++|||+ |.|-
T Consensus 105 ~~-~vliiDEi-~~l~ 118 (324)
T 3u61_B 105 RQ-KVIVIDEF-DRSG 118 (324)
T ss_dssp CE-EEEEEESC-CCGG
T ss_pred CC-eEEEEECC-cccC
Confidence 56 79999999 9885
No 124
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.49 E-value=0.077 Score=41.41 Aligned_cols=48 Identities=13% Similarity=0.195 Sum_probs=29.0
Q ss_pred CcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhc-----CCcEEEEccCCCCcchhh
Q 031654 30 AARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVA-----GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 30 ~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~-----g~dvl~~a~TGsGKT~~y 83 (155)
-.+|+++. +.+++.|.+.=. .|.+ .|.++. .+.+++.+|+|+|||+..
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 35799987 666666654200 0110 112222 268999999999999853
No 125
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=92.36 E-value=0.12 Score=44.88 Aligned_cols=41 Identities=22% Similarity=0.156 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHH
Q 031654 50 VKPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 50 ~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
..+++-|.+++.. .+..++|.|+.|||||.+-.--+...+.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~ 50 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMA 50 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4689999999865 3578999999999999876544444443
No 126
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.30 E-value=0.026 Score=42.68 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=29.2
Q ss_pred cccccCC--HHHHHhHHhCCCCCCCHHH-HHHHHH--HhcCCcEEEEccCCCCcchh
Q 031654 31 ARFAYVP--QHLRNKPRTYKYVKPTPVQ-RHATSI--LVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 31 ~~f~~l~--~~l~~~l~~~g~~~pt~iQ-~~~i~~--~l~g~dvl~~a~TGsGKT~~ 82 (155)
.+|+++. +..++.|.+.- . .+.+ ...+.. +..++.+++.||+|+|||..
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVV-E--LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHT-H--HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHH-H--HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 4788887 66666665431 0 1111 111111 13457899999999999975
No 127
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.24 E-value=0.11 Score=42.78 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=13.5
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
=.++.|+.|||||...
T Consensus 163 v~~I~G~aGsGKTt~I 178 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI 178 (446)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678999999999864
No 128
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.23 E-value=0.059 Score=44.24 Aligned_cols=17 Identities=24% Similarity=0.301 Sum_probs=14.9
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
..+++.+|+|+|||...
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 47999999999999853
No 129
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.23 E-value=0.11 Score=43.35 Aligned_cols=39 Identities=13% Similarity=-0.138 Sum_probs=25.7
Q ss_pred HhHHhCCCCCCCHHHHHHHH-HHhcCCcEEEEccCCCCcchh
Q 031654 42 NKPRTYKYVKPTPVQRHATS-ILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 42 ~~l~~~g~~~pt~iQ~~~i~-~~l~g~dvl~~a~TGsGKT~~ 82 (155)
..|.+.|. +++.+..-+. .+-.|..+++++|||||||..
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34455562 2343333333 456788999999999999975
No 130
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=92.17 E-value=0.087 Score=48.41 Aligned_cols=41 Identities=29% Similarity=0.292 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHH
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMR 93 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~ 93 (155)
.+|+-|.++|-. .+++++|.|..|||||.+-+--++..+..
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~ 50 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITA 50 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhc
Confidence 579999999864 38899999999999999865555555544
No 131
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.16 E-value=0.12 Score=43.36 Aligned_cols=19 Identities=26% Similarity=0.204 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|..+++.+|+|+|||...
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999753
No 132
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.13 E-value=0.19 Score=44.27 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=14.5
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
.+++++||+|+|||..
T Consensus 192 ~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCEEEECTTSCHHHH
T ss_pred CceEEEcCCCCCHHHH
Confidence 5899999999999974
No 133
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.02 E-value=0.16 Score=40.70 Aligned_cols=85 Identities=14% Similarity=0.123 Sum_probs=45.2
Q ss_pred HHHHHhc------CCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------HHHHHHHhcC-CcEEEECh---HH
Q 031654 59 ATSILVA------GRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------RKELRELARW-VDNLMATL---RR 118 (155)
Q Consensus 59 ~i~~~l~------g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------~~~~~~l~~~-~~IlI~TP---~~ 118 (155)
.+..++. |.-+++.+++|+|||. +++.++..+....... ......+.-. -+++|..| +.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTt-lal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~ 139 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTT-LALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQ 139 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHH-HHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHH-HHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHH
Confidence 4455555 3678999999999996 4445544443322221 1111122111 13444443 44
Q ss_pred HHHHHHcCCCCcccccceEEEEccccccc
Q 031654 119 LVNLLERGRVSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 119 l~~~l~~~~~~l~~l~~~lVlDEa~D~ll 147 (155)
+.+.+.. .+.-..+ ++||||.+ ..|.
T Consensus 140 ~l~~l~~-l~~~~~~-~lVVIDsl-~~l~ 165 (366)
T 1xp8_A 140 ALEIMEL-LVRSGAI-DVVVVDSV-AALT 165 (366)
T ss_dssp HHHHHHH-HHTTTCC-SEEEEECT-TTCC
T ss_pred HHHHHHH-HHhcCCC-CEEEEeCh-HHhc
Confidence 4444431 1112357 89999999 8776
No 134
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.98 E-value=0.029 Score=46.05 Aligned_cols=52 Identities=12% Similarity=0.106 Sum_probs=31.9
Q ss_pred CCCcccccCC--HHHHHhHHhCC---CCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchh
Q 031654 28 SPAARFAYVP--QHLRNKPRTYK---YVKPTPVQRHATSILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 28 ~~~~~f~~l~--~~l~~~l~~~g---~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
.|-.+|++++ ++..+.|.+.= +.+|.-.+...+ --.+.+++.||+|||||+.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHH
Confidence 4556899998 77777665421 112222221111 1237899999999999985
No 135
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.59 E-value=0.29 Score=37.61 Aligned_cols=44 Identities=9% Similarity=-0.031 Sum_probs=33.1
Q ss_pred HHHHHhHHhCCCCCCCHHHHHH-HHHHhcCC-----cEEEEccCCCCcchhhh
Q 031654 38 QHLRNKPRTYKYVKPTPVQRHA-TSILVAGR-----DLMACAQTGSRKTTPFC 84 (155)
Q Consensus 38 ~~l~~~l~~~g~~~pt~iQ~~~-i~~~l~g~-----dvl~~a~TGsGKT~~yl 84 (155)
..+.+.|+..||. |++... +-..+.|+ .+++.+|+|||||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 5888999988885 666544 44555553 49999999999998764
No 136
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.55 E-value=0.2 Score=41.81 Aligned_cols=44 Identities=11% Similarity=0.093 Sum_probs=30.1
Q ss_pred HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchh
Q 031654 38 QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 38 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
..+.+.+... +-.-..+=..+.-.+..|.++++.||+|+|||..
T Consensus 14 ~~l~~~l~~~-ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 14 SRLSSSLEKG-LYERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHTT-CSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHhh-hHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 4455555543 3333344455666778889999999999999985
No 137
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.29 E-value=0.26 Score=36.63 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=13.6
Q ss_pred CCcEEEEccCCCCcchhhh
Q 031654 66 GRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yl 84 (155)
|+=.+++++-|||||.+.+
T Consensus 28 G~l~vitG~MgsGKTT~lL 46 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELI 46 (214)
T ss_dssp CEEEEEECSTTSCHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 3434577888999998753
No 138
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.26 E-value=0.22 Score=36.46 Aligned_cols=35 Identities=20% Similarity=0.089 Sum_probs=28.2
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhh
Q 031654 49 YVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 49 ~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~y 83 (155)
+..-+.-|..++.-+..|.-+.+.+|+|||||.-.
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 44445667778888889999999999999999854
No 139
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.82 E-value=0.22 Score=34.41 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|+.+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 688999999999999875
No 140
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=90.72 E-value=0.16 Score=40.71 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=19.5
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..++.|.| +++.++||||||..-
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 3455688976 778899999999764
No 141
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.70 E-value=0.055 Score=44.07 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=31.3
Q ss_pred CCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHh------cCCcEEEEccCCCCcchh
Q 031654 29 PAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILV------AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 29 ~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l------~g~dvl~~a~TGsGKT~~ 82 (155)
|-.+|++++ ++..+.|++. +. .|+.. |.++ -.+.++..||+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~-v~--~Pl~~---pe~f~~~gi~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEV-IE--LPVKH---PELFESLGIAQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHH-TH--HHHHC---HHHHHHHTCCCCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHH-HH--HHHhC---HHHHHhCCCCCCCceEEeCCCCCCHHHH
Confidence 446899998 7777777653 11 12111 2222 237899999999999985
No 142
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.37 E-value=0.12 Score=41.07 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=18.4
Q ss_pred HHhcCCcEEEEccCCCCcchh
Q 031654 62 ILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 62 ~~l~g~dvl~~a~TGsGKT~~ 82 (155)
.+..|..+++++|||||||..
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHH
Confidence 456889999999999999975
No 143
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.31 E-value=0.21 Score=39.59 Aligned_cols=78 Identities=13% Similarity=0.061 Sum_probs=39.8
Q ss_pred CCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------HHHHHHHhc-CCcEEEECh---HHHHHHHHcCCCCcc
Q 031654 66 GRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------RKELRELAR-WVDNLMATL---RRLVNLLERGRVSLQ 131 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------~~~~~~l~~-~~~IlI~TP---~~l~~~l~~~~~~l~ 131 (155)
|+-+++.+++|||||...+ -++..+....... ....+.+.- .-++.+..| +.+++.+.. .+.-.
T Consensus 61 G~iv~I~G~pGsGKTtLal-~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~-l~~~~ 138 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVAL-HAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADM-LVRSG 138 (349)
T ss_dssp TSEEEEEESTTSSHHHHHH-HHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH-HHTTT
T ss_pred CeEEEEECCCCCCHHHHHH-HHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHH-HHhcC
Confidence 4678999999999997543 3333333222111 111122211 113444444 333333321 01113
Q ss_pred cccceEEEEccccccc
Q 031654 132 MIIRYLALKEAADQTL 147 (155)
Q Consensus 132 ~l~~~lVlDEa~D~ll 147 (155)
.. ++||||++ ..++
T Consensus 139 ~~-~lIVIDsl-~~l~ 152 (349)
T 2zr9_A 139 AL-DIIVIDSV-AALV 152 (349)
T ss_dssp CC-SEEEEECG-GGCC
T ss_pred CC-CEEEEcCh-Hhhc
Confidence 47 89999999 8877
No 144
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.21 E-value=0.18 Score=37.65 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.+..+++.+++|+|||..
T Consensus 28 ~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELI 45 (265)
T ss_dssp SCSCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 468999999999999975
No 145
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=90.19 E-value=0.19 Score=39.66 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=19.8
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..++.|.| +++.++||||||.+-
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3455688976 788899999999875
No 146
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=90.14 E-value=0.1 Score=36.97 Aligned_cols=20 Identities=10% Similarity=0.049 Sum_probs=16.7
Q ss_pred hcCCcEEEEccCCCCcchhh
Q 031654 64 VAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~y 83 (155)
+.|+-+++++|+|||||...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45778899999999999853
No 147
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=89.85 E-value=0.18 Score=40.13 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=19.0
Q ss_pred HHHHhcCCc--EEEEccCCCCcchhh
Q 031654 60 TSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 60 i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
+..++.|.| +++.++||||||.+.
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 445678976 678899999999874
No 148
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=89.82 E-value=0.55 Score=39.10 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=14.5
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
+.+++.+|+|+|||+..
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999853
No 149
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.73 E-value=0.18 Score=40.67 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=20.2
Q ss_pred cCCcEEEEccCCCCcchhhhhHHHHHHH
Q 031654 65 AGRDLMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
...++++.|+||||||... -+++..+.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~ 78 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGL 78 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 4579999999999999974 34444444
No 150
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=89.71 E-value=0.12 Score=40.01 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=19.9
Q ss_pred HHHHHHhcCCcEEEEccCCCCcchh
Q 031654 58 HATSILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 58 ~~i~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
...-.+..|.++++.+|+|+|||..
T Consensus 38 ~l~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 38 RLLIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHHHHcCCeEEEECCCCCcHHHH
Confidence 3334556789999999999999974
No 151
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=89.62 E-value=0.22 Score=39.54 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=19.5
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..++.|.| +++.++||||||..-
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3456678976 677899999999874
No 152
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=89.60 E-value=0.22 Score=39.91 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=19.2
Q ss_pred HHHHhcCCc--EEEEccCCCCcchhh
Q 031654 60 TSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 60 i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
+..++.|.| +++.++||||||..-
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 345678976 677899999999875
No 153
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=89.51 E-value=0.23 Score=39.61 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=19.0
Q ss_pred HHHHhcCCc--EEEEccCCCCcchhh
Q 031654 60 TSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 60 i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
+..++.|.| +++.++||||||..-
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 345678976 677899999999874
No 154
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=89.45 E-value=0.23 Score=39.96 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=19.3
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..++.|.| +++.++||||||..-
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3455688976 677899999999763
No 155
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=89.41 E-value=0.23 Score=39.18 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=20.5
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..++.|.| +++.++||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 5567789976 678899999999775
No 156
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.37 E-value=0.047 Score=41.76 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=24.8
Q ss_pred CcccccCC--HHHHHhHHhCCCCCCCHHHH-HHHHHH--hcCCcEEEEccCCCCcchh
Q 031654 30 AARFAYVP--QHLRNKPRTYKYVKPTPVQR-HATSIL--VAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 30 ~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~-~~i~~~--l~g~dvl~~a~TGsGKT~~ 82 (155)
-.+|++++ +++.+.|++.= . .|... ..+..+ .-.+.+++.+|+|+|||+.
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i-~--~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAI-L--APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp ------CCHHHHHHHHHHHHH-T--HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH-H--HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 45899998 77777776521 1 11111 112111 1123499999999999985
No 157
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=89.34 E-value=0.24 Score=39.72 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=19.5
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..++.|.| +++.++||||||...
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 3455688976 677899999999764
No 158
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=89.33 E-value=0.24 Score=39.55 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=19.9
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..++.|.| +++.++||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3456678976 677899999999885
No 159
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=89.28 E-value=0.24 Score=39.61 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=19.5
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..++.|.| +++.++||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3456688976 677899999999774
No 160
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=89.28 E-value=0.23 Score=39.68 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=19.1
Q ss_pred HHHHhcCCc--EEEEccCCCCcchhh
Q 031654 60 TSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 60 i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
+..++.|.| +++.++||||||..-
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 345678976 777899999999875
No 161
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=89.27 E-value=0.24 Score=40.22 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=20.5
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..++.|.| +++.++||||||.+-
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5567789977 677899999999875
No 162
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.24 E-value=0.15 Score=40.15 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=18.0
Q ss_pred HHhcCCcEEEEccCCCCcchh
Q 031654 62 ILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 62 ~~l~g~dvl~~a~TGsGKT~~ 82 (155)
.+..|..+.+.+|||||||..
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHH
T ss_pred hccCCCEEEEECCCCCCHHHH
Confidence 345789999999999999984
No 163
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=89.21 E-value=0.23 Score=39.62 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=19.1
Q ss_pred HHHHhcCCc--EEEEccCCCCcchhh
Q 031654 60 TSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 60 i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
+..++.|.| +++.++||||||..-
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 345678976 678899999999874
No 164
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=89.16 E-value=0.23 Score=39.70 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=19.4
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..++.|.| +++.++||||||...
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 3455678976 677899999999764
No 165
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=89.16 E-value=0.25 Score=39.37 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=19.8
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..++.|.| +++.++||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3456688976 677899999999875
No 166
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.08 E-value=0.33 Score=38.73 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=42.0
Q ss_pred CCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------HHHHHHHhcC-CcEEEEChHHH---HHHHHcCCCCcc
Q 031654 66 GRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------RKELRELARW-VDNLMATLRRL---VNLLERGRVSLQ 131 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------~~~~~~l~~~-~~IlI~TP~~l---~~~l~~~~~~l~ 131 (155)
|.-+++.+|+|+|||. +++.++..+....... ....+.+.-. -++.+..|..+ +..+.. .+.-.
T Consensus 61 G~i~~I~GppGsGKST-Lal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~-l~~~~ 138 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTT-LALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDE-LVRSG 138 (356)
T ss_dssp TEEEEEEESTTSSHHH-HHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHH-HHHTS
T ss_pred CcEEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHH-Hhhhc
Confidence 4578999999999997 4455554443322211 2222222211 23555554333 222221 01114
Q ss_pred cccceEEEEcccccccc
Q 031654 132 MIIRYLALKEAADQTLD 148 (155)
Q Consensus 132 ~l~~~lVlDEa~D~ll~ 148 (155)
.. +++|||.+ ..++.
T Consensus 139 ~~-dlvVIDSi-~~l~~ 153 (356)
T 3hr8_A 139 VV-DLIVVDSV-AALVP 153 (356)
T ss_dssp CC-SEEEEECT-TTCCC
T ss_pred CC-CeEEehHh-hhhcC
Confidence 57 89999999 77764
No 167
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.02 E-value=0.74 Score=35.65 Aligned_cols=67 Identities=7% Similarity=0.051 Sum_probs=37.7
Q ss_pred cEEEEccCCCCcchhhhhHHHHHHHHhhhchHHHHHHHh-cCCcEEEEChH-------HHHHHHHc--CCCCcccccceE
Q 031654 68 DLMACAQTGSRKTTPFCFPIINGIMREYYSARKELRELA-RWVDNLMATLR-------RLVNLLER--GRVSLQMIIRYL 137 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~~~~~~~l~-~~~~IlI~TP~-------~l~~~l~~--~~~~l~~l~~~l 137 (155)
..++.||.|+|||..... +.... .... ..++++.-.|. .+.+++.. ..-....- +.+
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~-la~~~-----------~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~-kvv 86 (305)
T 2gno_A 20 SILINGEDLSYPREVSLE-LPEYV-----------EKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTR-KYV 86 (305)
T ss_dssp EEEEECSSSSHHHHHHHH-HHHHH-----------HTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSS-EEE
T ss_pred EEEEECCCCCCHHHHHHH-HHHhC-----------chhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCc-eEE
Confidence 689999999999875422 11100 0000 34677766653 12232221 11123567 899
Q ss_pred EEEcccccccc
Q 031654 138 ALKEAADQTLD 148 (155)
Q Consensus 138 VlDEa~D~ll~ 148 (155)
||||| |.|-.
T Consensus 87 iIdea-d~lt~ 96 (305)
T 2gno_A 87 IVHDC-ERMTQ 96 (305)
T ss_dssp EETTG-GGBCH
T ss_pred EeccH-HHhCH
Confidence 99999 98853
No 168
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=88.97 E-value=0.21 Score=40.10 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=20.4
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..++.|.| +++.++||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5567789976 677899999999875
No 169
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=88.90 E-value=0.24 Score=40.33 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=19.1
Q ss_pred HHHHhcCCc--EEEEccCCCCcchhh
Q 031654 60 TSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 60 i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
+..++.|.| +++.++||||||.+.
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 445678976 777899999999874
No 170
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=88.89 E-value=0.23 Score=40.47 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=20.6
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..++.|.| +++.++||||||...
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 5677789976 677899999999874
No 171
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.81 E-value=0.15 Score=35.50 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.++-+++++++|||||..
T Consensus 2 ~~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 356789999999999976
No 172
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.76 E-value=0.093 Score=36.84 Aligned_cols=20 Identities=20% Similarity=0.120 Sum_probs=17.0
Q ss_pred hcCCcEEEEccCCCCcchhh
Q 031654 64 VAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~y 83 (155)
..++.+++++++|||||...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 45788999999999999853
No 173
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.75 E-value=0.078 Score=43.96 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=31.0
Q ss_pred CCcccccCC--HHHHHhHHhCCCCCCCHHHH-HHHHHH--hcCCcEEEEccCCCCcchh
Q 031654 29 PAARFAYVP--QHLRNKPRTYKYVKPTPVQR-HATSIL--VAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 29 ~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~-~~i~~~--l~g~dvl~~a~TGsGKT~~ 82 (155)
|-.+|++++ ++..+.|++.= . .|... ..+..+ --.+-+++.+|+|+|||+.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V-~--~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVV-E--LPLLSPERFATLGIDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHT-H--HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHH-H--HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHH
Confidence 346899998 77777776531 1 11111 111111 1237899999999999975
No 174
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=88.62 E-value=0.25 Score=39.74 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=18.8
Q ss_pred HHHHhcCCc--EEEEccCCCCcchhh
Q 031654 60 TSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 60 i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
+..++.|.| +++.++||||||...
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCcceec
Confidence 345678876 677899999999774
No 175
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=88.53 E-value=0.17 Score=36.24 Aligned_cols=20 Identities=25% Similarity=0.047 Sum_probs=16.7
Q ss_pred hcCCcEEEEccCCCCcchhh
Q 031654 64 VAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~y 83 (155)
..|+.+++++++|||||...
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHH
Confidence 36789999999999999763
No 176
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=88.44 E-value=0.28 Score=39.69 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=19.1
Q ss_pred HHHHhcCCc--EEEEccCCCCcchhh
Q 031654 60 TSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 60 i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
+..++.|.| +++.++||||||.+.
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 445688976 778899999999874
No 177
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.33 E-value=0.45 Score=47.83 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=33.5
Q ss_pred CCHHHHHhHHhCCCCCCCHHH-HHHHH---HHhcCCcEEEEccCCCCcchhhh
Q 031654 36 VPQHLRNKPRTYKYVKPTPVQ-RHATS---ILVAGRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 36 l~~~l~~~l~~~g~~~pt~iQ-~~~i~---~~l~g~dvl~~a~TGsGKT~~yl 84 (155)
|...+.+.++++|+.. ++.+ .+++. .+...+-++++||||||||.+|-
T Consensus 873 l~~ai~~~~~~~~L~~-~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLVT-KQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCcc-CHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 3377778888888854 4433 33443 22344679999999999999974
No 178
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.29 E-value=0.14 Score=38.87 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=17.6
Q ss_pred HhcCCcEEEEccCCCCcchhh
Q 031654 63 LVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 63 ~l~g~dvl~~a~TGsGKT~~y 83 (155)
+..|.-+.+++|||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 456778999999999999753
No 179
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=88.23 E-value=0.21 Score=39.76 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=20.2
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..++.|.| +++.++||||||..-
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 4566789976 677899999999875
No 180
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=88.17 E-value=0.14 Score=36.88 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=17.1
Q ss_pred HHhcCCcEEEEccCCCCcchh
Q 031654 62 ILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 62 ~~l~g~dvl~~a~TGsGKT~~ 82 (155)
++..|+-+++++|+|||||..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHH
T ss_pred ccccCCEEEEECCCCCCHHHH
Confidence 345678899999999999874
No 181
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.16 E-value=0.07 Score=43.85 Aligned_cols=49 Identities=12% Similarity=0.140 Sum_probs=29.9
Q ss_pred CCcccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHh------cCCcEEEEccCCCCcchhh
Q 031654 29 PAARFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILV------AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 29 ~~~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l------~g~dvl~~a~TGsGKT~~y 83 (155)
|-.+|++++ ++..+.|++. +. .|+.. |.++ -.+-+++.||+|||||+..
T Consensus 176 p~v~~~digGl~~~k~~l~e~-v~--~pl~~---p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREV-IE--LPLKN---PEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHH-HH--HHHHC---HHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHH-HH--HHHhC---HHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 445799988 6666666542 00 11111 1121 2378999999999999853
No 182
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=88.15 E-value=0.17 Score=36.03 Aligned_cols=20 Identities=20% Similarity=0.129 Sum_probs=16.4
Q ss_pred HhcCCcEEEEccCCCCcchh
Q 031654 63 LVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 63 ~l~g~dvl~~a~TGsGKT~~ 82 (155)
+..|.-+++.||+|||||..
T Consensus 3 i~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHH
T ss_pred CCCCCEEEEECCCCCCHHHH
Confidence 34678899999999999875
No 183
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.15 E-value=0.18 Score=36.33 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|+-+.+++|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999853
No 184
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.13 E-value=0.13 Score=41.95 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=23.8
Q ss_pred HHhCCCCCCCHHHHHHHHHHh--cCCcEEEEccCCCCcchh
Q 031654 44 PRTYKYVKPTPVQRHATSILV--AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 44 l~~~g~~~pt~iQ~~~i~~~l--~g~dvl~~a~TGsGKT~~ 82 (155)
+.++|+ .+-+..++..++ .|.-+++.+|||||||..
T Consensus 146 l~~Lg~---~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 146 LHSLGM---TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp GGGSCC---CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 455554 334445555444 345689999999999975
No 185
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.07 E-value=0.075 Score=43.53 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=29.7
Q ss_pred CCcccccCC--HHHHHhHHhCC---CCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhh
Q 031654 29 PAARFAYVP--QHLRNKPRTYK---YVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 29 ~~~~f~~l~--~~l~~~l~~~g---~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~y 83 (155)
|-.+|++++ +...+.|.+.= +.+|--.+... +--.+-+++.||+|||||+..
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 345899988 66666665420 11111111100 112367999999999999853
No 186
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=88.01 E-value=0.32 Score=39.98 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=19.0
Q ss_pred HHHHhcCCc--EEEEccCCCCcchhh
Q 031654 60 TSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 60 i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
+..++.|.| |++.++||||||...
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 345578976 778899999999875
No 187
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.00 E-value=1.6 Score=35.41 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=18.0
Q ss_pred cCCcEEEEccCCCCcchhhhhHHHHHH
Q 031654 65 AGRDLMACAQTGSRKTTPFCFPIINGI 91 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yllp~l~~l 91 (155)
.|.=+++.|++|+|||... +-++..+
T Consensus 202 ~G~liiI~G~pG~GKTtl~-l~ia~~~ 227 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFA-LNIAQNV 227 (454)
T ss_dssp TTCEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 3466889999999999744 3333333
No 188
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=87.98 E-value=0.34 Score=35.50 Aligned_cols=19 Identities=21% Similarity=0.104 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|+=.++.++.|||||.-.
T Consensus 19 ~g~l~fiyG~MgsGKTt~L 37 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTEL 37 (195)
T ss_dssp CCEEEEEEECTTSCHHHHH
T ss_pred ceEEEEEECCCCCcHHHHH
Confidence 4667889999999999643
No 189
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=87.95 E-value=0.18 Score=38.21 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
++.+++.||+|+|||...
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 578999999999999853
No 190
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=87.93 E-value=0.19 Score=37.07 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCcchh
Q 031654 66 GRDLMACAQTGSRKTTP 82 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~ 82 (155)
.+.+++.+|+|+|||..
T Consensus 39 ~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46899999999999975
No 191
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=87.90 E-value=0.26 Score=39.88 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=23.0
Q ss_pred CCHHHHHHH--------HHHhcCCc--EEEEccCCCCcchhh
Q 031654 52 PTPVQRHAT--------SILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 52 pt~iQ~~~i--------~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
+..-|...+ ..++.|.| +++.++||||||...
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 444555554 34678876 677899999999875
No 192
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=87.84 E-value=0.19 Score=35.16 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+++.+++|||||..
T Consensus 2 ~~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp -CCEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 466799999999999975
No 193
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.80 E-value=0.88 Score=44.03 Aligned_cols=85 Identities=15% Similarity=0.067 Sum_probs=45.2
Q ss_pred HHHHhc------CCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------HHHHHHHhc-CCcEEEEChH---HH
Q 031654 60 TSILVA------GRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------RKELRELAR-WVDNLMATLR---RL 119 (155)
Q Consensus 60 i~~~l~------g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------~~~~~~l~~-~~~IlI~TP~---~l 119 (155)
+..++. |+++++.+|+|+|||...+--+.+ ........ ....+.+-- --++.|..|. ++
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~e-a~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~ 1493 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA-AQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQA 1493 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH-HHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHH-HHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHH
Confidence 566666 689999999999999865433322 22221111 111222110 0124555553 33
Q ss_pred HHHHHcCCCCcccccceEEEEcccccccc
Q 031654 120 VNLLERGRVSLQMIIRYLALKEAADQTLD 148 (155)
Q Consensus 120 ~~~l~~~~~~l~~l~~~lVlDEa~D~ll~ 148 (155)
...+.. .+.-..+ +.|||||+ +-++.
T Consensus 1494 l~~~~~-lvr~~~~-~lVVIDsi-~al~p 1519 (2050)
T 3cmu_A 1494 LEICDA-LARSGAV-DVIVVDSV-AALTP 1519 (2050)
T ss_dssp HHHHHH-HHHHTCC-SEEEESCG-GGCCC
T ss_pred HHHHHH-HHhcCCC-CEEEEcCh-hHhcc
Confidence 333321 1112467 89999999 86664
No 194
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=87.57 E-value=0.21 Score=35.03 Aligned_cols=18 Identities=17% Similarity=0.060 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
++.+++++++|||||...
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 568999999999999753
No 195
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=87.56 E-value=0.21 Score=36.18 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|+=+++++|+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4677899999999999753
No 196
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.44 E-value=0.068 Score=43.95 Aligned_cols=51 Identities=10% Similarity=0.202 Sum_probs=31.0
Q ss_pred CCcccccCC--HHHHHhHHhC---CCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchh
Q 031654 29 PAARFAYVP--QHLRNKPRTY---KYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 29 ~~~~f~~l~--~~l~~~l~~~---g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
|-.+|++++ ++..+.|++. -+.+|--.+... +--.+-++..+|+|+|||+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G---i~~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG---IKPPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT---CCCCSEEEEESSTTTTHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCCCceECCCCchHHHH
Confidence 446899998 6666666542 111222111111 11237899999999999985
No 197
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=87.42 E-value=0.23 Score=42.66 Aligned_cols=36 Identities=31% Similarity=0.283 Sum_probs=28.8
Q ss_pred CCCCCCHHHHHHHHHHhc----C-CcEEEEccCCCCcchhhh
Q 031654 48 KYVKPTPVQRHATSILVA----G-RDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 48 g~~~pt~iQ~~~i~~~l~----g-~dvl~~a~TGsGKT~~yl 84 (155)
+| .|++.|..+|..+.. | +..++.+.||||||+.+.
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a 46 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMA 46 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHH
Confidence 67 899999999986653 3 357788999999998764
No 198
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=87.32 E-value=0.2 Score=34.27 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=13.0
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
-++++|++|||||..
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999974
No 199
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=87.25 E-value=0.14 Score=38.25 Aligned_cols=19 Identities=16% Similarity=-0.006 Sum_probs=14.8
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|.=.+++++-|||||...
T Consensus 27 ~G~I~vitG~M~sGKTT~L 45 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEEL 45 (219)
T ss_dssp CCEEEEEEECTTSCHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 4555688898999999754
No 200
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=87.18 E-value=0.32 Score=37.56 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.+.++++.+++|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 457999999999999985
No 201
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=87.17 E-value=0.24 Score=39.45 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..++.|.| +++.++||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4455678976 678899999999875
No 202
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=86.92 E-value=0.19 Score=35.40 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCCCcchh
Q 031654 64 VAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~ 82 (155)
..|.-+++.+++|||||..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3567799999999999975
No 203
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=86.73 E-value=0.25 Score=34.91 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.+..+++++++|||||..
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999985
No 204
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=86.70 E-value=0.25 Score=35.09 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.=+.+.||+|||||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 577788999999999975
No 205
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=86.55 E-value=0.34 Score=41.11 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=32.9
Q ss_pred CCcEEEEccCCCCcchhhhhHHHHHHHHhhhch---------HHHHHHHhcCCcE---EEEChHHHHHHH
Q 031654 66 GRDLMACAQTGSRKTTPFCFPIINGIMREYYSA---------RKELRELARWVDN---LMATLRRLVNLL 123 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~---------~~~~~~l~~~~~I---lI~TP~~l~~~l 123 (155)
+.+++|.+.||||||.+.-.-+++.+....... ......+..-+|+ +++.|......|
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg~eLs~~~~lPHl~~~Vvtd~~~a~~~L 283 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANAL 283 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSSHHHHTTTTCTTBSSSCBCCHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCChhhhHhhcCCCcccceeeCCHHHHHHHH
Confidence 468999999999999875444444333222111 2223333344555 567777654443
No 206
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=86.53 E-value=0.31 Score=39.19 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=19.4
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..++.|.| +++.++||||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 3455678876 677899999999875
No 207
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=86.53 E-value=0.25 Score=35.69 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
|-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999884
No 208
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=86.41 E-value=0.28 Score=33.90 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCcchh
Q 031654 66 GRDLMACAQTGSRKTTP 82 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~ 82 (155)
+..+++.+++|||||..
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56799999999999875
No 209
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.23 E-value=0.22 Score=39.65 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCCCCcchhh
Q 031654 64 VAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~y 83 (155)
..|.-+++++|||||||...
T Consensus 121 ~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45568999999999999753
No 210
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=86.17 E-value=0.26 Score=36.07 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=16.7
Q ss_pred hcCCcEEEEccCCCCcchh
Q 031654 64 VAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~ 82 (155)
+.|+-+++++|+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 4788899999999999984
No 211
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.16 E-value=0.25 Score=36.68 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
.+.+++.+|+|+|||...
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 357999999999999753
No 212
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=86.13 E-value=0.22 Score=39.61 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
++-+++.+|||||||...
T Consensus 40 ~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346899999999999753
No 213
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=86.05 E-value=0.53 Score=33.47 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=13.6
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.||+|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999975
No 214
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=85.89 E-value=0.22 Score=39.72 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=17.3
Q ss_pred HhcCCcEEEEccCCCCcchhh
Q 031654 63 LVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 63 ~l~g~dvl~~a~TGsGKT~~y 83 (155)
+..|..+++++|||||||...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 346778999999999999853
No 215
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=85.75 E-value=0.43 Score=38.17 Aligned_cols=19 Identities=42% Similarity=0.391 Sum_probs=16.1
Q ss_pred cCCc--EEEEccCCCCcchhh
Q 031654 65 AGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~d--vl~~a~TGsGKT~~y 83 (155)
.|.+ +++.++||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 5877 689999999999764
No 216
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.72 E-value=0.26 Score=36.99 Aligned_cols=16 Identities=25% Similarity=-0.027 Sum_probs=13.2
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
-+++++|+|||||...
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3688999999998753
No 217
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=85.63 E-value=0.63 Score=36.97 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=40.0
Q ss_pred CCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------HHHHHHHhc-CCcEEEECh---HHHHHHHHcCCCCcc
Q 031654 66 GRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------RKELRELAR-WVDNLMATL---RRLVNLLERGRVSLQ 131 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------~~~~~~l~~-~~~IlI~TP---~~l~~~l~~~~~~l~ 131 (155)
|+-+++.+++|+|||...+ .++..+....... ......+.- ..++.+..| +.+.+.+.. ...-.
T Consensus 63 G~ii~I~G~pGsGKTtLal-~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~-l~~~~ 140 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTL-QVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA-LARSG 140 (356)
T ss_dssp TSEEEEECSTTSSHHHHHH-HHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH-HHHHT
T ss_pred CeEEEEECCCCCCHHHHHH-HHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHH-HHhcc
Confidence 4678999999999998553 3333333222111 111112211 113444444 333333321 01123
Q ss_pred cccceEEEEccccccc
Q 031654 132 MIIRYLALKEAADQTL 147 (155)
Q Consensus 132 ~l~~~lVlDEa~D~ll 147 (155)
.+ ++||||.+ ..|.
T Consensus 141 ~~-~lVVIDsl-~~l~ 154 (356)
T 1u94_A 141 AV-DVIVVDSV-AALT 154 (356)
T ss_dssp CC-SEEEEECG-GGCC
T ss_pred CC-CEEEEcCH-HHhc
Confidence 57 89999999 7776
No 218
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=85.52 E-value=0.67 Score=45.95 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=33.5
Q ss_pred CCHHHHHhHHhCCCCCCCHHH-HHHH---HHHhcCCcEEEEccCCCCcchhhh
Q 031654 36 VPQHLRNKPRTYKYVKPTPVQ-RHAT---SILVAGRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 36 l~~~l~~~l~~~g~~~pt~iQ-~~~i---~~~l~g~dvl~~a~TGsGKT~~yl 84 (155)
+...+.+.+.+.|+. +++.+ .+++ ..+...+.|+++||||||||.++-
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 336777888888875 45544 3333 233456789999999999999864
No 219
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=85.50 E-value=0.34 Score=35.44 Aligned_cols=20 Identities=25% Similarity=0.306 Sum_probs=16.2
Q ss_pred HhcCCcEEEEccCCCCcchh
Q 031654 63 LVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 63 ~l~g~dvl~~a~TGsGKT~~ 82 (155)
+-.|+-+.+.+|+|+|||..
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 35688899999999999975
No 220
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=85.41 E-value=0.31 Score=35.93 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=16.8
Q ss_pred HHhcCCcEEEEccCCCCcchhh
Q 031654 62 ILVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 62 ~~l~g~dvl~~a~TGsGKT~~y 83 (155)
++-.|+=+++.+|+|+|||...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHH
Confidence 4567888999999999999853
No 221
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=85.33 E-value=0.33 Score=41.39 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCcEEEEChHHHHHHHHcC------CCCcccccceEEEEccccccccc
Q 031654 99 RKELRELARWVDNLMATLRRLVNLLERG------RVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 99 ~~~~~~l~~~~~IlI~TP~~l~~~l~~~------~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
....+.....+||||++...|.+...+. .+++.+ ..+||||| |.|.|.
T Consensus 166 y~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~--~ivI~DEA-HNL~d~ 219 (620)
T 4a15_A 166 YESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQ--IVIILDEA-HNLPDI 219 (620)
T ss_dssp HHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGG--EEEEETTG-GGHHHH
T ss_pred cHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCC--eEEEEECC-CchHHH
Confidence 3444555667999999997766554322 123333 48999999 999874
No 222
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.22 E-value=0.27 Score=38.65 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=13.3
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
=+++++|||||||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3788999999999753
No 223
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=85.21 E-value=0.29 Score=33.80 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=13.0
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
-++++|++|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 478999999999975
No 224
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=85.13 E-value=0.4 Score=36.35 Aligned_cols=17 Identities=24% Similarity=0.176 Sum_probs=14.7
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
..+++.+|+|+|||...
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 37999999999999754
No 225
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=85.10 E-value=0.26 Score=38.03 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
..++++.||+|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 457999999999999853
No 226
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=85.10 E-value=0.54 Score=34.87 Aligned_cols=44 Identities=14% Similarity=0.043 Sum_probs=29.4
Q ss_pred HHHHHhHHhCCCCCCCHHHHHHHHHHhcC----CcEEEEccCCCCcchhh
Q 031654 38 QHLRNKPRTYKYVKPTPVQRHATSILVAG----RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 38 ~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g----~dvl~~a~TGsGKT~~y 83 (155)
..+.+.|+-.|++ +... ..++..++++ +.+++.+|+|+|||...
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 5777777766643 2233 3345555555 25999999999999754
No 227
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=85.05 E-value=0.31 Score=33.41 Aligned_cols=15 Identities=13% Similarity=-0.048 Sum_probs=13.1
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
-+++.|+.|||||..
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999975
No 228
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=84.87 E-value=0.28 Score=34.40 Aligned_cols=20 Identities=20% Similarity=0.016 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCCcchhhh
Q 031654 65 AGRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yl 84 (155)
.|.=+.+++|+|||||...-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45668899999999998654
No 229
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=84.80 E-value=0.37 Score=37.94 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
..++++.+|+|+|||...
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 468999999999999753
No 230
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=84.79 E-value=0.37 Score=34.48 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+++.+++|||||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467899999999999975
No 231
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=84.69 E-value=0.3 Score=38.52 Aligned_cols=18 Identities=17% Similarity=0.051 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
++-+++.||||||||...
T Consensus 3 ~~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCcCCHHHHH
Confidence 344788999999999753
No 232
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=84.63 E-value=3.5 Score=33.32 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=17.7
Q ss_pred CCcEEEEccCCCCcchhhhhHHHHHHH
Q 031654 66 GRDLMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
|.=+++.|++|+|||.. ++-++..+.
T Consensus 200 G~l~ii~G~pg~GKT~l-al~ia~~~a 225 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAF-ALTIAQNAA 225 (444)
T ss_dssp TCEEEEEECTTSCHHHH-HHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHH-HHHHHHHHH
Confidence 35688899999999964 444444333
No 233
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=84.62 E-value=0.34 Score=39.53 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
++.+++.+|+|+|||...
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 468999999999999764
No 234
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=84.44 E-value=0.24 Score=34.65 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|..+++.+++|||||..
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456789999999999975
No 235
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=84.43 E-value=0.39 Score=33.95 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=13.6
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
+=+.+.+|+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578899999999975
No 236
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=84.31 E-value=0.38 Score=34.61 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=16.9
Q ss_pred HHhcCCcEEEEccCCCCcchhh
Q 031654 62 ILVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 62 ~~l~g~dvl~~a~TGsGKT~~y 83 (155)
.+-.|+=+.+.+|+|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5677888999999999999753
No 237
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=84.25 E-value=0.089 Score=45.23 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=17.4
Q ss_pred HHHHHhHHhCCCCCCCHHHHH
Q 031654 38 QHLRNKPRTYKYVKPTPVQRH 58 (155)
Q Consensus 38 ~~l~~~l~~~g~~~pt~iQ~~ 58 (155)
..+.+.|.++||++...++..
T Consensus 170 ~~l~~~L~~~GY~r~~~V~~~ 190 (661)
T 2d7d_A 170 NELLRKLVDIQYARNDIDFQR 190 (661)
T ss_dssp HHHHHHHHHTTCEECSSSCCT
T ss_pred HHHHHHHHHcCCeeCCcCCCC
Confidence 889999999999987776554
No 238
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=84.17 E-value=0.31 Score=33.80 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|.-+++++++|||||...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3567899999999998753
No 239
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=83.90 E-value=0.65 Score=40.18 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=20.5
Q ss_pred HHHHHhcCCc--EEEEccCCCCcchhh
Q 031654 59 ATSILVAGRD--LMACAQTGSRKTTPF 83 (155)
Q Consensus 59 ~i~~~l~g~d--vl~~a~TGsGKT~~y 83 (155)
.+..+++|.| |++.++||||||.+-
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5678899976 677799999999764
No 240
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.80 E-value=0.56 Score=36.06 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=14.7
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999753
No 241
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=83.63 E-value=0.58 Score=33.67 Aligned_cols=31 Identities=19% Similarity=0.045 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHhcCCcEEEEccCCCCcchhh
Q 031654 52 PTPVQRHATSILVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 52 pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~y 83 (155)
.++.++.. ..+..|.-+++.+++|||||...
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 35565555 45567788999999999998753
No 242
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=83.40 E-value=0.43 Score=34.79 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=17.3
Q ss_pred hcCCcEEEEccCCCCcchhhh
Q 031654 64 VAGRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~yl 84 (155)
-.|.-+.+.+|+|+|||....
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHH
Confidence 467789999999999998543
No 243
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=83.37 E-value=0.4 Score=38.06 Aligned_cols=18 Identities=28% Similarity=0.325 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
++.+++.+|+|+|||...
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999853
No 244
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=83.35 E-value=0.22 Score=37.10 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
.+.+++.||+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 357999999999999853
No 245
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=83.25 E-value=0.35 Score=33.80 Aligned_cols=18 Identities=17% Similarity=0.099 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
+.-+++.+++|||||...
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999753
No 246
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=83.13 E-value=0.43 Score=35.22 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=14.7
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|+-+++.+|||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 356689999999999753
No 247
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=83.13 E-value=0.42 Score=37.59 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
.+.+++.+|+|+|||...
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999853
No 248
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=83.05 E-value=0.45 Score=34.74 Aligned_cols=20 Identities=30% Similarity=0.278 Sum_probs=12.6
Q ss_pred hcCCcEEEEccCCCCcchhh
Q 031654 64 VAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~y 83 (155)
..|+=+.+.+|+|||||...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677889999999999763
No 249
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.01 E-value=0.4 Score=35.45 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=13.9
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
+.+++.+|+|+|||..
T Consensus 50 ~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHL 65 (254)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4599999999999974
No 250
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=82.82 E-value=0.57 Score=35.33 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=18.4
Q ss_pred HHhcCCcEEEEccCCCCcchhh
Q 031654 62 ILVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 62 ~~l~g~dvl~~a~TGsGKT~~y 83 (155)
..+.|+.+++.+++|||||...
T Consensus 44 ~~l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 44 PYLNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HHHTTCCEEEECSTTSCHHHHH
T ss_pred hhcCCCEEEEECCCCCCHHHHH
Confidence 3345999999999999999863
No 251
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=82.63 E-value=0.51 Score=33.11 Aligned_cols=19 Identities=21% Similarity=0.171 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCCCCcchh
Q 031654 64 VAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~ 82 (155)
..+.-+++.+++|||||..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TTSCEEEEEECTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4567899999999999975
No 252
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=82.48 E-value=0.49 Score=33.90 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|.-+++.+|+|+|||...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4677899999999999643
No 253
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=82.26 E-value=0.52 Score=33.33 Aligned_cols=18 Identities=28% Similarity=0.141 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+++.++.|||||..
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 467899999999999975
No 254
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=82.21 E-value=0.94 Score=34.08 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCCCcchhhh
Q 031654 65 AGRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yl 84 (155)
.|+=.+++++-|||||.+.+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL 37 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELM 37 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHH
Confidence 45656777888999998754
No 255
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=82.15 E-value=0.44 Score=37.51 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
+-+++++|||||||...
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35889999999999753
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=82.01 E-value=0.47 Score=34.14 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=14.8
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456788899999999874
No 257
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=81.99 E-value=0.46 Score=37.73 Aligned_cols=16 Identities=25% Similarity=0.098 Sum_probs=13.6
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
-++++||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999753
No 258
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=81.81 E-value=0.85 Score=33.04 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|.-+++.+++|+|||...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp TTCEEEEEECTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4578899999999999864
No 259
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=81.77 E-value=0.93 Score=32.87 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|.-+++.|++|+|||.-.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHH
Confidence 3567899999999999743
No 260
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=81.74 E-value=0.45 Score=33.32 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCCcchh
Q 031654 66 GRDLMACAQTGSRKTTP 82 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~ 82 (155)
+.-++++++.|||||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45689999999999975
No 261
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=81.48 E-value=0.56 Score=36.53 Aligned_cols=18 Identities=22% Similarity=-0.005 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
++.+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 357999999999999853
No 262
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=81.32 E-value=0.56 Score=35.89 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=13.8
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
.-++++||+|||||..
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999875
No 263
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=81.26 E-value=2.3 Score=33.67 Aligned_cols=77 Identities=12% Similarity=0.087 Sum_probs=43.6
Q ss_pred cEEEEccCCCCcchhhhhHHHHHHHHh--hhch----------HHHHHHHhc-CCcEEEEChHHHHHH-HH---c-CCCC
Q 031654 68 DLMACAQTGSRKTTPFCFPIINGIMRE--YYSA----------RKELRELAR-WVDNLMATLRRLVNL-LE---R-GRVS 129 (155)
Q Consensus 68 dvl~~a~TGsGKT~~yllp~l~~l~~~--~~~~----------~~~~~~l~~-~~~IlI~TP~~l~~~-l~---~-~~~~ 129 (155)
-+.+.+|+|+|||... +.++...... .... ....+.+.- .-++++..|..+.+. +. . ..+.
T Consensus 30 iteI~G~pGsGKTtL~-Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~ 108 (333)
T 3io5_A 30 LLILAGPSKSFKSNFG-LTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIE 108 (333)
T ss_dssp EEEEEESSSSSHHHHH-HHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhh
Confidence 4789999999999754 4444444432 1111 222233321 235778776554433 21 1 1123
Q ss_pred cccccceEEEEccccccc
Q 031654 130 LQMIIRYLALKEAADQTL 147 (155)
Q Consensus 130 l~~l~~~lVlDEa~D~ll 147 (155)
-..+ +++|+|-+ ..|.
T Consensus 109 ~~~~-~lvVIDSI-~aL~ 124 (333)
T 3io5_A 109 RGEK-VVVFIDSL-GNLA 124 (333)
T ss_dssp TTCC-EEEEEECS-TTCB
T ss_pred ccCc-eEEEEecc-cccc
Confidence 3467 89999999 8776
No 264
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=81.12 E-value=0.5 Score=33.72 Aligned_cols=31 Identities=23% Similarity=0.178 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHhcCCcEEEEccCCCCcchhh
Q 031654 52 PTPVQRHATSILVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 52 pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~y 83 (155)
.+..+.... ..-.|.-+++.+++|||||...
T Consensus 12 ~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 12 VEKVDRQRL-LDQKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCHHHHHHH-HTSCCEEEEEECSTTSSHHHHH
T ss_pred cCHHHHHHh-cCCCCeEEEEECCCCCCHHHHH
Confidence 444444322 2245678899999999999753
No 265
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=81.04 E-value=0.45 Score=33.75 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+++.|+.|||||..
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 466789999999999975
No 266
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=80.82 E-value=0.56 Score=33.39 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=14.6
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
.-++++|++|||||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47999999999999853
No 267
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=80.70 E-value=0.55 Score=32.68 Aligned_cols=15 Identities=20% Similarity=0.060 Sum_probs=13.0
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
-+++.++.|||||..
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999974
No 268
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=80.63 E-value=0.64 Score=33.59 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.+..+++.++.|||||..
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356799999999999975
No 269
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=80.60 E-value=0.97 Score=36.99 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
..++++.||+|+|||...
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 368999999999999864
No 270
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=80.44 E-value=5.2 Score=31.47 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|.=+++.|++|+|||...
T Consensus 45 ~G~LiiIaG~pG~GKTt~a 63 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLM 63 (338)
T ss_dssp TTCEEEEEECTTSCHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHH
Confidence 3456888999999999754
No 271
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=80.34 E-value=1.1 Score=35.52 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.+.++++.++||||||...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred ccCceEEEcCCCCCHHHHH
Confidence 5679999999999999753
No 272
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=80.15 E-value=0.42 Score=33.61 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=13.5
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
.-+++.+|+|||||..
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 4578899999999985
No 273
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=80.10 E-value=0.66 Score=34.44 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||.-
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567788999999999974
No 274
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=80.09 E-value=0.57 Score=32.66 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+++.++.|||||..
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 466789999999999875
No 275
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=80.03 E-value=0.57 Score=38.15 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=12.7
Q ss_pred EEEEccCCCCcchhh
Q 031654 69 LMACAQTGSRKTTPF 83 (155)
Q Consensus 69 vl~~a~TGsGKT~~y 83 (155)
+++.||||||||...
T Consensus 5 i~i~GptgsGKttla 19 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEECSSSSHHHHH
T ss_pred EEEECcchhhHHHHH
Confidence 678999999999653
No 276
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=79.85 E-value=0.6 Score=35.10 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=27.7
Q ss_pred CCcccccCC--HHHHHhHHhCC--CCCCCHHHHHHHHHHh--cCCcEEEEccCCCCcchh
Q 031654 29 PAARFAYVP--QHLRNKPRTYK--YVKPTPVQRHATSILV--AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 29 ~~~~f~~l~--~~l~~~l~~~g--~~~pt~iQ~~~i~~~l--~g~dvl~~a~TGsGKT~~ 82 (155)
+-.+|+++. +...+.+++.- |.. ...+..+- -.+.+++.+|+|+|||..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 345788876 55555554431 111 11121110 123599999999999975
No 277
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=79.81 E-value=0.73 Score=33.31 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCCcchh
Q 031654 66 GRDLMACAQTGSRKTTP 82 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~ 82 (155)
+..+++.|++|||||..
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQ 21 (222)
T ss_dssp SCCEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 46799999999999975
No 278
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=79.75 E-value=0.67 Score=33.70 Aligned_cols=18 Identities=22% Similarity=0.043 Sum_probs=14.9
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.+.-+++.|++|||||..
T Consensus 6 ~~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp -CCEEEEEECTTSSHHHH
T ss_pred cCcEEEEECCCCCCHHHH
Confidence 346799999999999975
No 279
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=79.70 E-value=1.7 Score=31.30 Aligned_cols=19 Identities=16% Similarity=0.038 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCCcchhhh
Q 031654 66 GRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yl 84 (155)
|+=.++.++.|||||.+.+
T Consensus 8 g~i~v~~G~mgsGKTT~ll 26 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELI 26 (191)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 4556788999999997654
No 280
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=79.66 E-value=0.71 Score=32.43 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.+.-+++++++|||||..
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 457799999999999975
No 281
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=79.65 E-value=1.1 Score=42.72 Aligned_cols=26 Identities=27% Similarity=0.184 Sum_probs=20.0
Q ss_pred HHHHHh------cCCcEEEEccCCCCcchhhh
Q 031654 59 ATSILV------AGRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 59 ~i~~~l------~g~dvl~~a~TGsGKT~~yl 84 (155)
.+..++ .|+-+++++|+|||||+-..
T Consensus 1069 glD~~lg~GG~p~g~~~l~~G~~g~GKT~la~ 1100 (1706)
T 3cmw_A 1069 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 1100 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHH
T ss_pred hHHHHhccCCCCCCCEEEEEcCCCCChHHHHH
Confidence 445666 35679999999999998653
No 282
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=79.64 E-value=0.66 Score=32.31 Aligned_cols=16 Identities=19% Similarity=-0.024 Sum_probs=13.3
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
-.++++++|||||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4678999999999863
No 283
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=79.45 E-value=1.2 Score=37.59 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=19.3
Q ss_pred HHHhcCCcEEEEccCCCCcchhh
Q 031654 61 SILVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 61 ~~~l~g~dvl~~a~TGsGKT~~y 83 (155)
..+..|+.+++.+|+|+|||...
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 34567899999999999999764
No 284
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=79.44 E-value=1.1 Score=37.56 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCCCcchhhh
Q 031654 65 AGRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yl 84 (155)
.+.++++.+.||||||.+.-
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~ 185 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVN 185 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHH
Confidence 35799999999999998743
No 285
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=79.42 E-value=3.3 Score=33.84 Aligned_cols=17 Identities=35% Similarity=0.231 Sum_probs=14.0
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
+-+++++++|+|||...
T Consensus 98 ~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp EEEEECCCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788899999999864
No 286
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=79.37 E-value=0.66 Score=33.24 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=13.1
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.|++|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999975
No 287
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=79.19 E-value=0.71 Score=31.74 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
.++++.++.|||||..
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 5899999999999975
No 288
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=79.18 E-value=0.71 Score=35.91 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=14.9
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
..+++.+|+|+|||...
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999853
No 289
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=79.06 E-value=0.69 Score=39.23 Aligned_cols=15 Identities=13% Similarity=0.344 Sum_probs=14.1
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999975
No 290
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=78.93 E-value=0.71 Score=33.80 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.+..+++.+++|||||..
T Consensus 15 ~~~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 446899999999999974
No 291
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=78.93 E-value=0.62 Score=33.26 Aligned_cols=18 Identities=28% Similarity=0.012 Sum_probs=14.5
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||..
T Consensus 5 ~~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CcEEEEEECCCCCCHHHH
Confidence 345578899999999975
No 292
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=78.91 E-value=0.73 Score=38.17 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
.+.+++.+|+|+|||+..
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 368999999999999853
No 293
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=78.81 E-value=0.76 Score=31.85 Aligned_cols=18 Identities=17% Similarity=0.049 Sum_probs=10.9
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.+.-+++.++.|||||..
T Consensus 4 ~~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHT 21 (183)
T ss_dssp -CCEEEEECCC----CHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456789999999999975
No 294
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=78.74 E-value=0.8 Score=31.74 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=13.9
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
+.+++.+++|||||..
T Consensus 5 ~~i~i~G~~GsGKsTl 20 (175)
T 1via_A 5 KNIVFIGFMGSGKSTL 20 (175)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CEEEEEcCCCCCHHHH
Confidence 3689999999999875
No 295
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=78.74 E-value=0.71 Score=32.77 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.3
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
.+.+.+|+|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999853
No 296
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=78.73 E-value=0.79 Score=32.56 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+++.|+.|||||..
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 467799999999999975
No 297
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=78.69 E-value=0.72 Score=32.06 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=13.7
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
.-+++.+++|||||..
T Consensus 7 ~~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3588999999999985
No 298
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=78.68 E-value=0.83 Score=32.52 Aligned_cols=20 Identities=25% Similarity=0.009 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCcchhhh
Q 031654 65 AGRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yl 84 (155)
.|.-+++.+++|+|||....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 34678999999999997543
No 299
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=78.65 E-value=0.72 Score=45.75 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=18.1
Q ss_pred HHhcCCcEEEEccCCCCcchh
Q 031654 62 ILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 62 ~~l~g~dvl~~a~TGsGKT~~ 82 (155)
.+..|+.++++||||||||+.
T Consensus 1263 ~l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1263 LLNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp HHHHTCEEEEECSTTSSHHHH
T ss_pred HHHCCCeEEEECCCCCCHHHH
Confidence 345679999999999999985
No 300
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=78.62 E-value=0.82 Score=32.50 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-++++++.|||||..
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 567899999999999975
No 301
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=78.52 E-value=0.88 Score=31.70 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=13.9
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
.-+++.+++|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4589999999999975
No 302
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=78.39 E-value=0.72 Score=36.55 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=13.6
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
-.++++|||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999765
No 303
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=78.33 E-value=0.75 Score=33.02 Aligned_cols=15 Identities=27% Similarity=0.352 Sum_probs=13.1
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.|++|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999975
No 304
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=78.29 E-value=0.68 Score=32.45 Aligned_cols=19 Identities=32% Similarity=0.179 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|.-++++++.|||||...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567899999999999753
No 305
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=78.21 E-value=2 Score=41.65 Aligned_cols=25 Identities=28% Similarity=0.106 Sum_probs=19.4
Q ss_pred cCCcEEEEccCCCCcchhhhhHHHH
Q 031654 65 AGRDLMACAQTGSRKTTPFCFPIIN 89 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yllp~l~ 89 (155)
.|+++++++++|||||...+.-+.+
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~e 1104 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAA 1104 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999865444433
No 306
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=78.15 E-value=0.78 Score=31.48 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=13.8
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
+-+++.++.|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4588999999999975
No 307
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=78.07 E-value=0.8 Score=31.46 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=12.9
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
=.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 357899999999986
No 308
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=78.07 E-value=0.67 Score=33.25 Aligned_cols=19 Identities=21% Similarity=0.004 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|.=+.+.+|+|+|||...
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567889999999999754
No 309
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=77.96 E-value=0.88 Score=32.29 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCCcchh
Q 031654 66 GRDLMACAQTGSRKTTP 82 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~ 82 (155)
+.-+++++++|||||..
T Consensus 20 ~~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34689999999999975
No 310
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=77.80 E-value=1.4 Score=38.11 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
..++++.+|+|+|||...
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 469999999999999854
No 311
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=77.66 E-value=0.79 Score=32.22 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=12.9
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.|+.|||||..
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 478999999999974
No 312
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=77.66 E-value=0.89 Score=33.51 Aligned_cols=18 Identities=22% Similarity=0.036 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.+.-+++.+++|||||..
T Consensus 26 ~~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356799999999999974
No 313
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=77.44 E-value=0.99 Score=32.66 Aligned_cols=20 Identities=15% Similarity=-0.016 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCCcchhhh
Q 031654 65 AGRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~yl 84 (155)
.|.-+.+.+|+|+|||....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 45678999999999998643
No 314
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=77.43 E-value=0.82 Score=32.90 Aligned_cols=16 Identities=19% Similarity=0.111 Sum_probs=13.8
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
.-+.+.+++|||||..
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999875
No 315
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=77.40 E-value=0.9 Score=33.76 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||.-
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999874
No 316
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.26 E-value=1 Score=34.78 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=25.7
Q ss_pred ccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhh
Q 031654 32 RFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 32 ~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~y 83 (155)
+|+++- +.+.+.|++.-... -.+.++++.||+|+|||...
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~------------~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhcCCHHHHHHHHHHHhhC------------CCCCeEEEECCCCCCHHHHH
Confidence 466654 66666666532111 12335999999999999864
No 317
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=77.24 E-value=0.84 Score=32.34 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
.-+++.++.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35889999999999753
No 318
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=76.98 E-value=0.91 Score=32.97 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=13.3
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
-.+++|+.|||||...
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3578999999999953
No 319
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=76.89 E-value=0.22 Score=42.80 Aligned_cols=25 Identities=16% Similarity=0.111 Sum_probs=19.3
Q ss_pred EChHHHHHHHHcCCCCcccccceEEEEccccccc
Q 031654 114 ATLRRLVNLLERGRVSLQMIIRYLALKEAADQTL 147 (155)
Q Consensus 114 ~TP~~l~~~l~~~~~~l~~l~~~lVlDEa~D~ll 147 (155)
+||++|++++. +- .++|+||+ |+|+
T Consensus 314 ~tp~~LlDyl~-------~~-~llVlDEa-h~~~ 338 (664)
T 1c4o_A 314 EPPYTLLDYFP-------ED-FLVFLDES-HVTV 338 (664)
T ss_dssp SCCCCGGGGSC-------TT-CEEEEETH-HHHH
T ss_pred CCchHHHHHHh-------hc-cEEEEecc-cccH
Confidence 67887777764 33 58999999 9988
No 320
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.75 E-value=0.89 Score=37.65 Aligned_cols=17 Identities=35% Similarity=0.319 Sum_probs=15.1
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
+.++++||+|+|||...
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 68999999999999864
No 321
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=76.70 E-value=0.88 Score=32.26 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=13.1
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
-+.+.+++|||||..
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 478899999999985
No 322
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=76.49 E-value=0.97 Score=33.23 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||.-
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566788999999999974
No 323
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=76.41 E-value=0.98 Score=32.64 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCCcchh
Q 031654 66 GRDLMACAQTGSRKTTP 82 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~ 82 (155)
+..+++.+++|||||..
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45789999999999975
No 324
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=76.18 E-value=1.1 Score=32.87 Aligned_cols=18 Identities=28% Similarity=0.189 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||.-
T Consensus 34 ~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577788999999999975
No 325
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=76.16 E-value=1 Score=33.23 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||.-
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999974
No 326
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=76.13 E-value=0.86 Score=32.51 Aligned_cols=19 Identities=26% Similarity=-0.031 Sum_probs=15.3
Q ss_pred hcCCcEEEEccCCCCcchh
Q 031654 64 VAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~ 82 (155)
..|.-+.+.+++|||||..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCCEEEEEEESTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3455688999999999975
No 327
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=76.03 E-value=0.93 Score=31.55 Aligned_cols=14 Identities=36% Similarity=0.268 Sum_probs=12.4
Q ss_pred EEEEccCCCCcchh
Q 031654 69 LMACAQTGSRKTTP 82 (155)
Q Consensus 69 vl~~a~TGsGKT~~ 82 (155)
+++.|+.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68899999999975
No 328
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=75.96 E-value=1.1 Score=36.78 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCcchh
Q 031654 66 GRDLMACAQTGSRKTTP 82 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~ 82 (155)
.+++++.+|+|+|||..
T Consensus 50 ~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEEcCCCCCHHHH
Confidence 47899999999999875
No 329
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=75.95 E-value=1.1 Score=33.64 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=25.1
Q ss_pred ccccCC--HHHHHhHHhCCCCCCCHHHHHHHHHHhcCCcEEEEccCCCCcchhh
Q 031654 32 RFAYVP--QHLRNKPRTYKYVKPTPVQRHATSILVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 32 ~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~y 83 (155)
+|+++- +..++.+.+. +.. -....+++.||+|+|||...
T Consensus 15 ~~~~~~g~~~~~~~l~~~-l~~------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGY-VER------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SGGGSCSCHHHHHHHHTT-TTT------------TCCCCEEEESSSSSSHHHHH
T ss_pred CHHHHhCCHHHHHHHHHH-HhC------------CCCCeEEEECcCCcCHHHHH
Confidence 566654 6666666653 111 11236999999999999753
No 330
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=75.93 E-value=0.99 Score=45.47 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=17.8
Q ss_pred HHhcCCcEEEEccCCCCcchh
Q 031654 62 ILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 62 ~~l~g~dvl~~a~TGsGKT~~ 82 (155)
.+..|+.++++||||||||..
T Consensus 1300 ll~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1300 WLSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHHTTCCCEEESSTTSSHHHH
T ss_pred HHHCCCcEEEECCCCCCHHHH
Confidence 445779999999999999953
No 331
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=75.91 E-value=1 Score=35.09 Aligned_cols=19 Identities=11% Similarity=-0.053 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCCCcchh
Q 031654 64 VAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~ 82 (155)
-.|+-+.+.+|+|||||..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TTCSEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3678899999999999874
No 332
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=75.90 E-value=0.95 Score=31.68 Aligned_cols=14 Identities=29% Similarity=0.247 Sum_probs=12.4
Q ss_pred EEEEccCCCCcchh
Q 031654 69 LMACAQTGSRKTTP 82 (155)
Q Consensus 69 vl~~a~TGsGKT~~ 82 (155)
+++.|+.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999875
No 333
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=75.89 E-value=1.1 Score=32.17 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
|.-+.+.+|+|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 456789999999999864
No 334
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=75.81 E-value=0.94 Score=33.89 Aligned_cols=17 Identities=18% Similarity=0.010 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCCcchh
Q 031654 66 GRDLMACAQTGSRKTTP 82 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~ 82 (155)
+.-++++|++|||||..
T Consensus 4 ~~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTF 20 (260)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CEEEEEEcCCCCCHHHH
Confidence 34689999999999975
No 335
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=75.79 E-value=0.97 Score=32.15 Aligned_cols=15 Identities=33% Similarity=0.116 Sum_probs=12.8
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
-+.+.++.|||||..
T Consensus 4 ~i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999975
No 336
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=75.79 E-value=0.98 Score=30.84 Aligned_cols=15 Identities=20% Similarity=0.045 Sum_probs=13.0
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.++.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999975
No 337
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.71 E-value=1.4 Score=34.12 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=13.9
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
++++.||+|+|||...
T Consensus 48 ~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTI 63 (340)
T ss_dssp CEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999754
No 338
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=75.58 E-value=1 Score=34.65 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
|+-+++.+++|+|||...
T Consensus 105 g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SSEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 567889999999999764
No 339
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=75.56 E-value=1.1 Score=33.72 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||.-
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999975
No 340
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=75.23 E-value=1.1 Score=33.77 Aligned_cols=19 Identities=32% Similarity=0.324 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|.-+.+.+|+|||||.-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6778899999999999753
No 341
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=74.81 E-value=1.1 Score=34.69 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
|.-+.+.+|+|+|||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 566888999999999753
No 342
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=74.80 E-value=0.77 Score=34.18 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=14.3
Q ss_pred CCcEEEEccCCCCcchh
Q 031654 66 GRDLMACAQTGSRKTTP 82 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~ 82 (155)
+.-+++++++|||||..
T Consensus 32 ~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTI 48 (253)
T ss_dssp CEEEEEESCGGGTTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34689999999999975
No 343
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=74.73 E-value=1.2 Score=33.38 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||.-
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999985
No 344
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=74.68 E-value=1 Score=37.20 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=14.9
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
+.+++.+|+|+|||+..
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999853
No 345
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=74.63 E-value=1 Score=35.53 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=12.9
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
=.+++|+||+|||..
T Consensus 27 l~vi~G~NGaGKT~i 41 (371)
T 3auy_A 27 IVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 357899999999986
No 346
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=74.44 E-value=1.2 Score=34.09 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||.-
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999975
No 347
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=74.43 E-value=1.1 Score=32.27 Aligned_cols=15 Identities=13% Similarity=0.089 Sum_probs=13.1
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.+++|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999975
No 348
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=74.42 E-value=1.2 Score=33.09 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|+|||.-
T Consensus 31 ~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999975
No 349
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=74.35 E-value=1.3 Score=33.28 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=18.2
Q ss_pred HhcCCcEEEEccCCCCcchhhh
Q 031654 63 LVAGRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 63 ~l~g~dvl~~a~TGsGKT~~yl 84 (155)
+..|.-+++.+|+|+|||....
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHH
Confidence 4577889999999999998643
No 350
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=74.17 E-value=0.99 Score=33.58 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp TTEEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566788999999999975
No 351
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=74.12 E-value=1.2 Score=33.72 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||.-
T Consensus 36 ~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp TTCEEEEECCTTSCHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567788999999999975
No 352
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=73.96 E-value=1.3 Score=33.04 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|.-+.+.+|+|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999753
No 353
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=73.91 E-value=1.2 Score=33.51 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||.-
T Consensus 31 ~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566788999999999974
No 354
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=73.62 E-value=1.2 Score=31.34 Aligned_cols=16 Identities=25% Similarity=0.121 Sum_probs=13.6
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
-+.+.+++|||||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999853
No 355
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=73.43 E-value=1.3 Score=33.23 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|.-+.+.+|+|+|||.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLL 43 (249)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5677889999999999753
No 356
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=73.31 E-value=1.3 Score=38.35 Aligned_cols=18 Identities=17% Similarity=0.195 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
+.++++.+|+|+|||...
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 478999999999999853
No 357
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=73.22 E-value=1.3 Score=33.41 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||.-
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 566788999999999975
No 358
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=73.18 E-value=1.3 Score=33.04 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|.-+.+.+|+|+|||.-.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLG 46 (250)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677889999999999853
No 359
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=73.03 E-value=1.2 Score=32.37 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=13.0
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.++.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQ 16 (223)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999975
No 360
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=72.96 E-value=1.4 Score=33.27 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||.-
T Consensus 40 ~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 567788999999999975
No 361
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=72.75 E-value=1.4 Score=33.10 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||.-
T Consensus 30 ~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp TTCEEEEECCSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566788999999999975
No 362
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=72.74 E-value=1.2 Score=32.88 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.+..+++.++.|||||..
T Consensus 28 ~~~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 345799999999999975
No 363
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=72.66 E-value=1.3 Score=31.60 Aligned_cols=18 Identities=28% Similarity=-0.097 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
|.=+.+.+++|||||...
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345888999999999753
No 364
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=72.64 E-value=1.4 Score=33.45 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=15.9
Q ss_pred hcCCcEEEEccCCCCcchh
Q 031654 64 VAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~ 82 (155)
-.|.-+.+.+|+|||||.-
T Consensus 43 ~~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567788999999999975
No 365
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=72.61 E-value=1.4 Score=33.37 Aligned_cols=18 Identities=28% Similarity=0.363 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||.-
T Consensus 49 ~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCCcHHHH
Confidence 567788999999999975
No 366
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=72.59 E-value=1.5 Score=33.07 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=16.5
Q ss_pred hcCCcEEEEccCCCCcchhh
Q 031654 64 VAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~y 83 (155)
..|.=+++.|++|+|||...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHH
Confidence 45677899999999999754
No 367
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=72.56 E-value=0.65 Score=33.09 Aligned_cols=14 Identities=21% Similarity=0.173 Sum_probs=12.3
Q ss_pred EEEEccCCCCcchh
Q 031654 69 LMACAQTGSRKTTP 82 (155)
Q Consensus 69 vl~~a~TGsGKT~~ 82 (155)
+++.|+.|||||..
T Consensus 3 I~i~G~~GsGKsTl 16 (214)
T 1gtv_A 3 IAIEGVDGAGKRTL 16 (214)
T ss_dssp EEEEEEEEEEHHHH
T ss_pred EEEEcCCCCCHHHH
Confidence 67899999999974
No 368
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=72.50 E-value=1.4 Score=33.31 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|.-+.+.+|+|+|||.-.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLS 63 (267)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677889999999999853
No 369
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=72.49 E-value=1.1 Score=34.53 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
|.-+.+.+|+|+|||...
T Consensus 100 g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 345778999999999864
No 370
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=72.45 E-value=1.3 Score=31.79 Aligned_cols=16 Identities=25% Similarity=0.125 Sum_probs=13.7
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
.-+.+.++.|||||..
T Consensus 5 ~~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 5 YIVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578999999999985
No 371
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=72.31 E-value=0.84 Score=40.28 Aligned_cols=52 Identities=12% Similarity=0.261 Sum_probs=31.4
Q ss_pred CCCcccccCC--HHHHHhHHhCC-C--CCCCHHHHHHHHHHhcCCcEEEEccCCCCcchh
Q 031654 28 SPAARFAYVP--QHLRNKPRTYK-Y--VKPTPVQRHATSILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 28 ~~~~~f~~l~--~~l~~~l~~~g-~--~~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
.|-.+|++++ ++..+.|++.= + .+|...+.. .+...+-+++.+|+|+|||+.
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~---g~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS---CCCCCSCCEEESSTTSSHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc---CCCCCceEEEecCCCCCchHH
Confidence 3446799987 78887776651 1 111111000 011225799999999999975
No 372
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=72.30 E-value=1.3 Score=32.25 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=12.4
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.+|+||||+.-
T Consensus 2 ~Iil~GpPGsGKgTq 16 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQ 16 (206)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999763
No 373
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=72.30 E-value=1.4 Score=31.84 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=13.3
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
=.++.+|+|+|||...
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4578899999999864
No 374
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=72.26 E-value=4.5 Score=34.01 Aligned_cols=43 Identities=16% Similarity=0.045 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHHH
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIMR 93 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~~ 93 (155)
.++|.|...+..+...+-+++..+-|+|||.....-++-.+..
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~ 205 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF 205 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh
Confidence 4799999998877566789999999999999876544444443
No 375
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=72.21 E-value=1.2 Score=39.12 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.++.+++++|+|||||+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCEEEECSCTTSSHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 467899999999999975
No 376
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=72.12 E-value=1.5 Score=33.55 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|+|||.-
T Consensus 46 ~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567788999999999975
No 377
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=71.61 E-value=1.4 Score=34.11 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=13.8
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
-+++.||+|+|||...
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999754
No 378
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=71.26 E-value=2.3 Score=32.30 Aligned_cols=17 Identities=6% Similarity=-0.208 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCcchh
Q 031654 66 GRDLMACAQTGSRKTTP 82 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~ 82 (155)
|+.+++.|+.|+|||..
T Consensus 31 ~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp CSEEEEECCTTSSHHHH
T ss_pred CCeEEEECCCcCCHHHH
Confidence 57899999999999975
No 379
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=71.02 E-value=1.5 Score=31.68 Aligned_cols=19 Identities=5% Similarity=0.006 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|+-+++++++|+|||...
T Consensus 15 ~G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELS 33 (181)
T ss_dssp TTEEEEEEESSSSSHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHH
Confidence 4677999999999999543
No 380
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.97 E-value=1.8 Score=32.60 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=14.0
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
.++++.||+|+|||..
T Consensus 43 ~~~ll~G~~G~GKt~l 58 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTS 58 (323)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 3599999999999975
No 381
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=70.74 E-value=4.7 Score=30.08 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=16.2
Q ss_pred cCC-cEEEEccCCCCcchhhh
Q 031654 65 AGR-DLMACAQTGSRKTTPFC 84 (155)
Q Consensus 65 ~g~-dvl~~a~TGsGKT~~yl 84 (155)
+|+ ++++.++.|+|||...+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHH
Confidence 344 68999999999998754
No 382
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=70.63 E-value=4.4 Score=30.65 Aligned_cols=16 Identities=6% Similarity=-0.055 Sum_probs=14.3
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
..+++.|+.|+|||..
T Consensus 31 ~~v~i~G~~G~GKT~L 46 (357)
T 2fna_A 31 PITLVLGLRRTGKSSI 46 (357)
T ss_dssp SEEEEEESTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 5899999999999974
No 383
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=70.56 E-value=1.5 Score=32.28 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.1
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
+=+++.+|+||||+.-
T Consensus 30 kiI~llGpPGsGKgTq 45 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQ 45 (217)
T ss_dssp EEEEEECCTTCCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4578899999999764
No 384
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=70.54 E-value=1.5 Score=33.12 Aligned_cols=16 Identities=25% Similarity=0.152 Sum_probs=13.5
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
-+++.+++|||||...
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 385
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=70.38 E-value=1.6 Score=31.03 Aligned_cols=15 Identities=27% Similarity=0.005 Sum_probs=12.4
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
=+.+.+++|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367889999999874
No 386
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=70.33 E-value=2.7 Score=36.38 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=14.2
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
.+++.+|||+|||...
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999854
No 387
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=70.22 E-value=1.5 Score=30.59 Aligned_cols=19 Identities=21% Similarity=0.074 Sum_probs=15.3
Q ss_pred hcCCcEEEEccCCCCcchh
Q 031654 64 VAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~ 82 (155)
..|.-+.+.+|.|+|||.-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3556678899999999974
No 388
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=70.11 E-value=1.4 Score=32.15 Aligned_cols=18 Identities=28% Similarity=0.174 Sum_probs=14.6
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.++.|||||..
T Consensus 19 ~g~~i~i~G~~GsGKSTl 36 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTY 36 (230)
T ss_dssp CCEEEEEECSTTSCHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 355688999999999974
No 389
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=69.82 E-value=1.6 Score=33.56 Aligned_cols=16 Identities=19% Similarity=0.119 Sum_probs=13.0
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
=+.++|++|||||...
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999998753
No 390
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=69.76 E-value=1.6 Score=30.92 Aligned_cols=15 Identities=40% Similarity=0.262 Sum_probs=12.7
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
=+++.+++|||||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 477899999999874
No 391
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=69.48 E-value=1.5 Score=33.18 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=13.0
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
++.+.||+|+|||..
T Consensus 4 ~v~lvG~nGaGKSTL 18 (270)
T 3sop_A 4 NIMVVGQSGLGKSTL 18 (270)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999975
No 392
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=69.46 E-value=2.8 Score=36.11 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=14.3
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
++++.+|||+|||...
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 6999999999999864
No 393
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=69.12 E-value=1.8 Score=34.60 Aligned_cols=18 Identities=28% Similarity=0.082 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|+-+++.+|+|+|||..
T Consensus 168 ~~~~i~l~G~~GsGKSTl 185 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTL 185 (377)
T ss_dssp TCCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999874
No 394
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=69.10 E-value=1.7 Score=33.85 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=12.8
Q ss_pred EEEEccCCCCcchhh
Q 031654 69 LMACAQTGSRKTTPF 83 (155)
Q Consensus 69 vl~~a~TGsGKT~~y 83 (155)
.++++|+|+|||...
T Consensus 26 ~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 468999999999864
No 395
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=68.90 E-value=1.2 Score=34.62 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+++|+|||||..
T Consensus 79 ~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp TTCEEEEESSSCHHHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 567889999999999975
No 396
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=68.81 E-value=1.8 Score=31.12 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=13.0
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
-+.+.++.|||||..
T Consensus 14 iIgltG~~GSGKSTv 28 (192)
T 2grj_A 14 VIGVTGKIGTGKSTV 28 (192)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477889999999976
No 397
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=68.80 E-value=1.9 Score=37.96 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=14.1
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
.+++.||||+|||...
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999753
No 398
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=68.76 E-value=1.7 Score=32.34 Aligned_cols=16 Identities=19% Similarity=0.100 Sum_probs=13.0
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
.-+.+.+|+|||||.-
T Consensus 25 e~~~liG~nGsGKSTL 40 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVF 40 (240)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 3466889999999975
No 399
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=68.70 E-value=1.9 Score=33.15 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|+|||.-
T Consensus 63 ~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 566788999999999975
No 400
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=68.29 E-value=1.8 Score=31.80 Aligned_cols=19 Identities=21% Similarity=-0.025 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|.=+-+.+|+|||||...
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4455778899999999864
No 401
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=68.23 E-value=2 Score=31.41 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCCCcchhh
Q 031654 64 VAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~y 83 (155)
+.|.-+++.++.|||||...
T Consensus 1 m~g~~i~~eG~~gsGKsT~~ 20 (213)
T 4tmk_A 1 MRSKYIVIEGLEGAGKTTAR 20 (213)
T ss_dssp -CCCEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35788999999999999753
No 402
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=68.19 E-value=1.6 Score=32.05 Aligned_cols=18 Identities=28% Similarity=0.111 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+++.++.|||||..
T Consensus 25 ~g~~i~i~G~~GsGKsT~ 42 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTV 42 (229)
T ss_dssp CCEEEEEECCTTSCHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 567899999999999875
No 403
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=67.73 E-value=1.9 Score=32.58 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
|.-+.+.+|+|||||.-.
T Consensus 30 Ge~~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLL 47 (263)
T ss_dssp SSEEEEECCTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 667889999999999753
No 404
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=67.42 E-value=1.7 Score=33.70 Aligned_cols=18 Identities=11% Similarity=-0.081 Sum_probs=14.3
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
|.=+.+.||+|||||...
T Consensus 90 g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CEEEEEECCCCchHHHHH
Confidence 445778899999999753
No 405
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=67.29 E-value=1.7 Score=30.55 Aligned_cols=18 Identities=11% Similarity=0.322 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+++.+++|+|||.-
T Consensus 25 ~~~~v~lvG~~g~GKSTL 42 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSA 42 (210)
T ss_dssp CSEEEEEEECTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456799999999999974
No 406
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=67.29 E-value=2.3 Score=30.33 Aligned_cols=18 Identities=11% Similarity=0.036 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
+.-+.+.+++|||||...
T Consensus 3 ~~~i~i~G~~gsGkst~~ 20 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIA 20 (219)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456889999999999863
No 407
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=67.13 E-value=2 Score=31.78 Aligned_cols=16 Identities=19% Similarity=0.061 Sum_probs=13.5
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
-|.+.++.|||||...
T Consensus 24 iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999753
No 408
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=67.13 E-value=1.9 Score=32.67 Aligned_cols=15 Identities=27% Similarity=0.184 Sum_probs=13.4
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
-+.++|+.|||||..
T Consensus 77 iI~I~G~~GSGKSTv 91 (281)
T 2f6r_A 77 VLGLTGISGSGKSSV 91 (281)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999975
No 409
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=66.75 E-value=2.5 Score=33.05 Aligned_cols=18 Identities=22% Similarity=0.219 Sum_probs=14.7
Q ss_pred CCcEEE--EccCCCCcchhh
Q 031654 66 GRDLMA--CAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~--~a~TGsGKT~~y 83 (155)
+..+++ .|++|+|||...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHH
Confidence 356888 899999999853
No 410
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=66.68 E-value=3 Score=32.17 Aligned_cols=19 Identities=21% Similarity=-0.024 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCcchhhh
Q 031654 66 GRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yl 84 (155)
|.-+++.+++|+|||...+
T Consensus 107 G~i~~i~G~~GsGKT~la~ 125 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCH 125 (324)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHH
Confidence 3678999999999987543
No 411
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=66.68 E-value=2 Score=32.85 Aligned_cols=16 Identities=13% Similarity=0.109 Sum_probs=10.2
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
=+.+.|+.|||||...
T Consensus 7 iIgItG~sGSGKSTva 22 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVK 22 (290)
T ss_dssp EEEEESCC---CCTHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999753
No 412
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=66.43 E-value=3.6 Score=31.64 Aligned_cols=43 Identities=9% Similarity=-0.006 Sum_probs=25.1
Q ss_pred HHHHHhHHhC-C-C-CCCCHHHHHHHHHHhc----CCcEEEEccCCCCcchh
Q 031654 38 QHLRNKPRTY-K-Y-VKPTPVQRHATSILVA----GRDLMACAQTGSRKTTP 82 (155)
Q Consensus 38 ~~l~~~l~~~-g-~-~~pt~iQ~~~i~~~l~----g~dvl~~a~TGsGKT~~ 82 (155)
.++++.+++. + . .-||.+ ..+..++. |.=+++.|++|+|||..
T Consensus 35 ~~~~~~~~~~~~~~~~i~TG~--~~LD~~lgGl~~G~l~li~G~pG~GKTtl 84 (315)
T 3bh0_A 35 VTVYEEIESADGNITGVPSGF--TELDRMTYGYKRRNFVLIAARPSMGKTAF 84 (315)
T ss_dssp HHHHHHHHTCSSSCCSBCCSC--HHHHHHHSSBCTTCEEEEECCTTSSHHHH
T ss_pred HHHHHHHHhccCCCCCccCCh--HHHHhhcCCCCCCcEEEEEeCCCCCHHHH
Confidence 5556666543 1 1 123332 23344443 45689999999999964
No 413
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=66.25 E-value=2.5 Score=30.82 Aligned_cols=19 Identities=16% Similarity=0.015 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|.-+.+.++.|||||...
T Consensus 15 ~~~~i~i~G~~gsGKst~~ 33 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVA 33 (236)
T ss_dssp CCCEEEEECSSCSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567889999999999853
No 414
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=66.24 E-value=1.8 Score=34.40 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
|.-+.+.+|+|+|||...
T Consensus 157 g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 345778999999999864
No 415
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=66.07 E-value=2.2 Score=30.02 Aligned_cols=15 Identities=13% Similarity=0.031 Sum_probs=12.8
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
-+.+.++.|||||..
T Consensus 4 ~i~i~G~~GsGKst~ 18 (208)
T 3ake_A 4 IVTIDGPSASGKSSV 18 (208)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999975
No 416
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=66.02 E-value=7.8 Score=31.03 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEccCCCCcchhhhhHHHHHHH
Q 031654 51 KPTPVQRHATSILVAGRDLMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
.++|.|...+..+...+-+++..+-+.|||...+.-++..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~ 204 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVC 204 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHH
Confidence 689999999887655577899999999999986655554333
No 417
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=65.88 E-value=2.4 Score=32.69 Aligned_cols=16 Identities=19% Similarity=0.138 Sum_probs=13.5
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
-.++.+++|+|||...
T Consensus 26 ~~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 26 VTAIVGPNGSGKSNII 41 (322)
T ss_dssp EEEEECCTTTCSTHHH
T ss_pred cEEEECCCCCcHHHHH
Confidence 5778999999999763
No 418
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=65.78 E-value=1.1 Score=31.69 Aligned_cols=16 Identities=31% Similarity=0.173 Sum_probs=12.9
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
-+.+++++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999998753
No 419
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=65.40 E-value=2 Score=31.33 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCCCCcchhh
Q 031654 64 VAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~y 83 (155)
+.|.-+++.++.|||||...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~ 23 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNR 23 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHH
Confidence 56778999999999998753
No 420
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=65.26 E-value=2 Score=33.66 Aligned_cols=17 Identities=35% Similarity=0.257 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCCcchh
Q 031654 66 GRDLMACAQTGSRKTTP 82 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~ 82 (155)
|.-+.+.+|+|+|||..
T Consensus 129 g~vi~lvG~nGaGKTTl 145 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTT 145 (328)
T ss_dssp SEEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688999999999985
No 421
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=65.20 E-value=2.4 Score=35.65 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCCCcchh
Q 031654 64 VAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~ 82 (155)
-.|+-+.+++|+|||||.-
T Consensus 365 ~~G~~~~ivG~sGsGKSTl 383 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTL 383 (578)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCChHHHH
Confidence 3577889999999999975
No 422
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=65.12 E-value=2.1 Score=33.19 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.3
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
-+++.+++|+|||...
T Consensus 106 vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 4778999999999754
No 423
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=64.54 E-value=2.5 Score=33.63 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||..
T Consensus 29 ~Ge~~~llGpsGsGKSTL 46 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTL 46 (359)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 466788999999999974
No 424
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=64.49 E-value=4.4 Score=31.63 Aligned_cols=16 Identities=13% Similarity=-0.020 Sum_probs=13.1
Q ss_pred cEEEEccCCCCcchhh
Q 031654 68 DLMACAQTGSRKTTPF 83 (155)
Q Consensus 68 dvl~~a~TGsGKT~~y 83 (155)
=+.+.||+|||||...
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3778899999999763
No 425
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=64.48 E-value=2.4 Score=28.10 Aligned_cols=15 Identities=7% Similarity=0.169 Sum_probs=13.0
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.+++|+|||..
T Consensus 3 ki~v~G~~~~GKSsl 17 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSL 17 (161)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999963
No 426
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=64.43 E-value=2.8 Score=35.37 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCCCcchh
Q 031654 64 VAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~ 82 (155)
-.|+-+.+.+|+|||||..
T Consensus 379 ~~G~~~~ivG~sGsGKSTl 397 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTI 397 (598)
T ss_dssp CTTCEEEEECCTTSSTTHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3577889999999999975
No 427
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=64.30 E-value=2.3 Score=37.57 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=14.7
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
+.+++.+|+|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6799999999999985
No 428
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=63.97 E-value=4.5 Score=33.44 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=20.5
Q ss_pred hcCCcEEEEccCCCCcchhhhhHHHHHHH
Q 031654 64 VAGRDLMACAQTGSRKTTPFCFPIINGIM 92 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~yllp~l~~l~ 92 (155)
-.|.-+.+.+|+|||||.-...-++.-+.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35788999999999999865443233343
No 429
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=63.85 E-value=2.7 Score=33.39 Aligned_cols=18 Identities=33% Similarity=0.276 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||.-
T Consensus 40 ~Ge~~~llGpnGsGKSTL 57 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTI 57 (355)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567788999999999975
No 430
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=63.77 E-value=2.5 Score=30.35 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=12.2
Q ss_pred EEEEccCCCCcchh
Q 031654 69 LMACAQTGSRKTTP 82 (155)
Q Consensus 69 vl~~a~TGsGKT~~ 82 (155)
++|.+++|||||.-
T Consensus 2 ilV~Gg~~SGKS~~ 15 (180)
T 1c9k_A 2 ILVTGGARSGKSRH 15 (180)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 68999999999964
No 431
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=63.73 E-value=3 Score=35.15 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|+-+.+.+|+|||||.-
T Consensus 369 ~G~~~~ivG~sGsGKSTL 386 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTV 386 (595)
T ss_dssp TTCEEEEECCTTSSSTHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577889999999999975
No 432
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=63.46 E-value=1.7 Score=30.17 Aligned_cols=32 Identities=16% Similarity=-0.116 Sum_probs=15.5
Q ss_pred CCCHHHHHHHHHHhcC-CcEEEEccCCCCcchh
Q 031654 51 KPTPVQRHATSILVAG-RDLMACAQTGSRKTTP 82 (155)
Q Consensus 51 ~pt~iQ~~~i~~~l~g-~dvl~~a~TGsGKT~~ 82 (155)
++++.|+...+..... -.+++.+++|+|||.-
T Consensus 6 ~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsl 38 (188)
T 1zd9_A 6 HHHHHSSGLVPRGSKEEMELTLVGLQYSGKTTF 38 (188)
T ss_dssp -------------CCEEEEEEEECSTTSSHHHH
T ss_pred ccccccccccccCCCCccEEEEECCCCCCHHHH
Confidence 4556666666655543 5899999999999974
No 433
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=63.39 E-value=2.5 Score=27.96 Aligned_cols=15 Identities=20% Similarity=0.291 Sum_probs=13.2
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.|++|+|||..
T Consensus 5 ~i~v~G~~~~GKssl 19 (166)
T 2ce2_X 5 KLVVVGAGGVGKSAL 19 (166)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999974
No 434
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=63.28 E-value=2.7 Score=35.32 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|+-+.+.+|+|||||.-
T Consensus 368 ~G~~~~ivG~sGsGKSTL 385 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTI 385 (582)
T ss_dssp TTCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577889999999999975
No 435
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=63.27 E-value=2.8 Score=33.33 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||..
T Consensus 28 ~Ge~~~llGpnGsGKSTL 45 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTT 45 (359)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEEcCCCchHHHH
Confidence 566788999999999975
No 436
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=63.23 E-value=2.8 Score=33.36 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||..
T Consensus 28 ~Ge~~~llGpnGsGKSTL 45 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTL 45 (362)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 466788999999999975
No 437
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=63.05 E-value=2.6 Score=33.91 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=14.0
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
.=+++++++|||||...
T Consensus 259 ~lIil~G~pGSGKSTla 275 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFI 275 (416)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45788999999999753
No 438
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=62.95 E-value=2.9 Score=31.12 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCCCcchh
Q 031654 64 VAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~ 82 (155)
+.|.-+++.++.|||||..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~ 43 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTA 43 (236)
T ss_dssp -CCCEEEEEESTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 4678899999999999975
No 439
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=62.75 E-value=2.8 Score=35.20 Aligned_cols=19 Identities=26% Similarity=0.407 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCCCCcchh
Q 031654 64 VAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~ 82 (155)
-.|+-+.+.+|+|||||.-
T Consensus 367 ~~G~~~~ivG~sGsGKSTl 385 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTI 385 (582)
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4678899999999999975
No 440
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=62.74 E-value=2.5 Score=32.42 Aligned_cols=18 Identities=22% Similarity=-0.001 Sum_probs=14.9
Q ss_pred CcEEEEccCCCCcchhhh
Q 031654 67 RDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~yl 84 (155)
.-+++.+++|+|||...+
T Consensus 99 ~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 568999999999997543
No 441
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=62.71 E-value=2.9 Score=32.27 Aligned_cols=14 Identities=29% Similarity=0.216 Sum_probs=12.5
Q ss_pred EEEEccCCCCcchh
Q 031654 69 LMACAQTGSRKTTP 82 (155)
Q Consensus 69 vl~~a~TGsGKT~~ 82 (155)
+++.++.|||||..
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 67899999999985
No 442
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=62.64 E-value=2.3 Score=29.24 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCCcEEEEccCCCCcchh
Q 031654 56 QRHATSILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 56 Q~~~i~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
+...-+.-...-.+++.+.+|+|||.-
T Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKSsl 37 (181)
T 2h17_A 11 SSGLVPRGSQEHKVIIVGLDNAGKTTI 37 (181)
T ss_dssp ----------CEEEEEEEETTSSHHHH
T ss_pred cCCccCCCCceeEEEEECCCCCCHHHH
Confidence 333334444556899999999999974
No 443
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=62.60 E-value=5.3 Score=36.15 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=19.8
Q ss_pred HHHHHHHHHhc-C--CcEEEEccCCCCcchh
Q 031654 55 VQRHATSILVA-G--RDLMACAQTGSRKTTP 82 (155)
Q Consensus 55 iQ~~~i~~~l~-g--~dvl~~a~TGsGKT~~ 82 (155)
+=..|+..++. + ..|++.|.+|+|||.+
T Consensus 158 iA~~Ay~~m~~~~~~QsIiisGESGAGKTe~ 188 (1010)
T 1g8x_A 158 ISDVAYRSMLDDRQNQSLLITGESGAGKTEN 188 (1010)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCCCCCcchH
Confidence 43445554442 3 4699999999999987
No 444
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=62.46 E-value=2.7 Score=27.96 Aligned_cols=15 Identities=7% Similarity=0.166 Sum_probs=13.2
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.|++|+|||.-
T Consensus 7 ~i~v~G~~~~GKssl 21 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSM 21 (168)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 589999999999973
No 445
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=62.33 E-value=2.7 Score=28.99 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
..+++.|++|+|||..
T Consensus 49 ~~i~vvG~~g~GKSsl 64 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSL 64 (193)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5799999999999964
No 446
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=62.21 E-value=2.4 Score=33.51 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchhh
Q 031654 65 AGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~y 83 (155)
.|+-+++.+|+|+|||.-.
T Consensus 122 ~gsviLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLV 140 (331)
T ss_dssp ESEEEEEECSCSSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4466799999999999743
No 447
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=62.18 E-value=3.1 Score=30.52 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+++.++.|||||..
T Consensus 4 ~g~~i~~eG~~g~GKst~ 21 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQ 21 (216)
T ss_dssp CCCEEEEEECSSSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 578899999999999875
No 448
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=62.09 E-value=3.2 Score=34.06 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=16.9
Q ss_pred hcCCcEEEEccCCCCcchh
Q 031654 64 VAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~ 82 (155)
..|.-+.+.+|+|||||..
T Consensus 136 ~~Ge~v~IvGpnGsGKSTL 154 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSL 154 (460)
T ss_dssp SSCCCEEEEESTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4788999999999999975
No 449
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=62.05 E-value=3 Score=33.47 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||..
T Consensus 28 ~Ge~~~llGpsGsGKSTL 45 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTL 45 (381)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCchHHHH
Confidence 566788999999999974
No 450
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=61.91 E-value=3 Score=33.23 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||..
T Consensus 28 ~Ge~~~llGpnGsGKSTL 45 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTT 45 (372)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCcHHHHH
Confidence 566788999999999975
No 451
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=61.87 E-value=2.7 Score=27.96 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=13.3
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.|++|+|||.-
T Consensus 5 ~i~v~G~~~~GKssl 19 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSI 19 (170)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999974
No 452
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=61.80 E-value=2.5 Score=32.41 Aligned_cols=18 Identities=11% Similarity=-0.033 Sum_probs=14.0
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
|.=+.+.|++|||||...
T Consensus 80 g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 345778899999999753
No 453
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=61.62 E-value=2.8 Score=27.99 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=13.3
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.|++|+|||.-
T Consensus 8 ~i~v~G~~~~GKSsl 22 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSI 22 (170)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 689999999999974
No 454
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=61.43 E-value=3.1 Score=33.19 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||..
T Consensus 36 ~Ge~~~llGpnGsGKSTL 53 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTT 53 (372)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCChHHHH
Confidence 567788999999999975
No 455
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=61.39 E-value=3.1 Score=33.44 Aligned_cols=19 Identities=32% Similarity=0.351 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCCCcchh
Q 031654 64 VAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~ 82 (155)
-.|.-+.+.+|+|+|||..
T Consensus 45 ~~Ge~~~llGpsGsGKSTL 63 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTL 63 (390)
T ss_dssp CTTCEEEEEESTTSSHHHH
T ss_pred cCCCEEEEECCCCChHHHH
Confidence 3577889999999999985
No 456
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=61.32 E-value=3 Score=31.08 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCCcchhh
Q 031654 66 GRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~y 83 (155)
..-+.+.+|+|||||...
T Consensus 9 ~~~i~i~G~~GsGKsTla 26 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVS 26 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346889999999999753
No 457
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=61.18 E-value=3 Score=29.22 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=13.0
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.|++|+|||.-
T Consensus 7 kv~lvG~~g~GKSTL 21 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNL 21 (199)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 478999999999974
No 458
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=61.07 E-value=2.9 Score=30.90 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=14.2
Q ss_pred HhcCCcEEEEccCCCCcchhh
Q 031654 63 LVAGRDLMACAQTGSRKTTPF 83 (155)
Q Consensus 63 ~l~g~dvl~~a~TGsGKT~~y 83 (155)
+..|.-+++.++.|||||...
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~ 42 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHL 42 (227)
T ss_dssp -CCCCEEEEECCC---CHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHH
Confidence 357888999999999998753
No 459
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=60.93 E-value=2.9 Score=27.91 Aligned_cols=15 Identities=13% Similarity=0.295 Sum_probs=13.1
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.|++|+|||.-
T Consensus 5 ~i~v~G~~~~GKssl 19 (170)
T 1g16_A 5 KILLIGDSGVGKSCL 19 (170)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 588999999999973
No 460
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=60.84 E-value=3 Score=28.15 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=13.8
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
..+++.|++|+|||.-
T Consensus 9 ~~i~v~G~~~~GKSsl 24 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSL 24 (182)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 3689999999999974
No 461
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=60.70 E-value=3 Score=29.10 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=13.2
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
-+++.+++|+|||.-
T Consensus 31 kv~lvG~~g~GKSTL 45 (191)
T 1oix_A 31 KVVLIGDSGVGKSNL 45 (191)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 478999999999974
No 462
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=60.58 E-value=2.3 Score=29.43 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=14.0
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
..+++.+.+|+|||..
T Consensus 21 ~ki~v~G~~~~GKSsl 36 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCL 36 (189)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4799999999999963
No 463
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=60.57 E-value=3.2 Score=34.95 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|+-+.+++|+|||||..
T Consensus 368 ~Ge~~~ivG~sGsGKSTl 385 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTL 385 (587)
T ss_dssp TTCEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577889999999999975
No 464
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=60.57 E-value=2.5 Score=29.23 Aligned_cols=16 Identities=25% Similarity=0.171 Sum_probs=14.2
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
-.+++.|.+|+|||.-
T Consensus 22 ~ki~v~G~~~~GKSsl 37 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTI 37 (190)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4799999999999974
No 465
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=60.50 E-value=3 Score=27.60 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=13.3
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.|++|+|||.-
T Consensus 5 ~i~v~G~~~~GKSsl 19 (167)
T 1kao_A 5 KVVVLGSGGVGKSAL 19 (167)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999974
No 466
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=60.50 E-value=3 Score=32.56 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=14.9
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|+-+++.|++|+|||..
T Consensus 146 ~g~gvli~G~sG~GKStl 163 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSEC 163 (312)
T ss_dssp TTEEEEEEESSSSSHHHH
T ss_pred CCEEEEEEcCCCCCHHHH
Confidence 456799999999999654
No 467
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=60.40 E-value=3 Score=27.62 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=13.7
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
..+++.|++|+|||.-
T Consensus 5 ~~i~v~G~~~~GKssl 20 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSAL 20 (168)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 3689999999999974
No 468
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=60.39 E-value=2.8 Score=30.61 Aligned_cols=17 Identities=24% Similarity=0.083 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCCcchh
Q 031654 66 GRDLMACAQTGSRKTTP 82 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~ 82 (155)
|.-+++.+..|||||..
T Consensus 2 ~~~i~~~G~~g~GKtt~ 18 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTF 18 (241)
T ss_dssp CEEEEEEECTTSSHHHH
T ss_pred CeEEEEEcCCCCCHHHH
Confidence 45688999999999974
No 469
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=60.21 E-value=4 Score=31.86 Aligned_cols=25 Identities=16% Similarity=-0.108 Sum_probs=18.2
Q ss_pred HHHHhc-----CCcEEEEccCCCCcchhhh
Q 031654 60 TSILVA-----GRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 60 i~~~l~-----g~dvl~~a~TGsGKT~~yl 84 (155)
+..++. |.-+++.+++|||||...+
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 455554 3568899999999998543
No 470
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=59.67 E-value=4.3 Score=35.25 Aligned_cols=50 Identities=10% Similarity=0.041 Sum_probs=31.3
Q ss_pred cccCC---HHHHHhHHhCCCC----CCCHHHHHHHHHHhc-C--CcEEEEccCCCCcchh
Q 031654 33 FAYVP---QHLRNKPRTYKYV----KPTPVQRHATSILVA-G--RDLMACAQTGSRKTTP 82 (155)
Q Consensus 33 f~~l~---~~l~~~l~~~g~~----~pt~iQ~~~i~~~l~-g--~dvl~~a~TGsGKT~~ 82 (155)
|..+| ++.++..+..... +...+=..|+..++. + ..+++.+.+|+|||.+
T Consensus 51 yk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~ 110 (697)
T 1lkx_A 51 FKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEA 110 (697)
T ss_dssp SSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHH
T ss_pred CcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhh
Confidence 44454 6666655443322 223455566665543 3 4699999999999987
No 471
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=59.48 E-value=3 Score=30.94 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
++.-+++.|+.|||||..
T Consensus 23 ~~~~I~ieG~~GsGKST~ 40 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTF 40 (263)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 456789999999999964
No 472
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=59.38 E-value=3.4 Score=28.50 Aligned_cols=16 Identities=6% Similarity=0.158 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
..+++.|++|+|||..
T Consensus 24 ~~i~v~G~~~~GKSsl 39 (195)
T 1svi_A 24 PEIALAGRSNVGKSSF 39 (195)
T ss_dssp CEEEEEEBTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5799999999999974
No 473
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=59.35 E-value=3.2 Score=27.99 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=13.3
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.|++|+|||.-
T Consensus 9 ~i~v~G~~~~GKSsl 23 (177)
T 1wms_A 9 KVILLGDGGVGKSSL 23 (177)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999974
No 474
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=58.98 E-value=3.5 Score=28.26 Aligned_cols=16 Identities=6% Similarity=0.133 Sum_probs=13.8
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
..+++.|++|+|||..
T Consensus 24 ~~i~v~G~~~~GKSsl 39 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSL 39 (195)
T ss_dssp CEEEEEEBTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3699999999999963
No 475
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=58.82 E-value=3.4 Score=29.18 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
..+++.+++|+|||..
T Consensus 13 ~~i~~~G~~g~GKTsl 28 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSL 28 (218)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4799999999999974
No 476
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=58.73 E-value=3.4 Score=27.48 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=13.2
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.|++|+|||.-
T Consensus 5 ki~v~G~~~~GKssl 19 (167)
T 1c1y_A 5 KLVVLGSGGVGKSAL 19 (167)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999973
No 477
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=58.24 E-value=3.6 Score=27.41 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=13.2
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.|++|+|||.-
T Consensus 5 ~i~v~G~~~~GKssl 19 (172)
T 2erx_A 5 RVAVFGAGGVGKSSL 19 (172)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999973
No 478
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=57.89 E-value=2.5 Score=33.42 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.|.-+.+.+|+|||||..
T Consensus 25 ~Ge~~~llGpnGsGKSTL 42 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLF 42 (348)
T ss_dssp TTCEEEEECCCTHHHHHH
T ss_pred CCCEEEEECCCCccHHHH
Confidence 566788999999999975
No 479
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=57.62 E-value=6 Score=30.25 Aligned_cols=26 Identities=12% Similarity=0.049 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCcEEEEccCCCCcchh
Q 031654 57 RHATSILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 57 ~~~i~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
...+-..+.|+-+.+.+|+|+|||..
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTL 181 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSI 181 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHH
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHH
Confidence 34445667788899999999999874
No 480
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=57.56 E-value=4 Score=32.56 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=15.8
Q ss_pred hcCCcEEEEccCCCCcchh
Q 031654 64 VAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 64 l~g~dvl~~a~TGsGKT~~ 82 (155)
-.|.-+.+.+|+|+|||..
T Consensus 52 ~~Gei~~IiGpnGaGKSTL 70 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTL 70 (366)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEEcCCCchHHHH
Confidence 3567788999999999974
No 481
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=57.40 E-value=5.2 Score=38.23 Aligned_cols=88 Identities=17% Similarity=0.087 Sum_probs=50.0
Q ss_pred HHHHHhc------CCcEEEEccCCCCcchhhhhHHHHHHHHhhhch----------HHHHHHHh-cCCcEEEEChHHHHH
Q 031654 59 ATSILVA------GRDLMACAQTGSRKTTPFCFPIINGIMREYYSA----------RKELRELA-RWVDNLMATLRRLVN 121 (155)
Q Consensus 59 ~i~~~l~------g~dvl~~a~TGsGKT~~yllp~l~~l~~~~~~~----------~~~~~~l~-~~~~IlI~TP~~l~~ 121 (155)
.+...+. |+-+.+.+|.|||||... ++++.........+ ....+.+- +--+++|+-|..-.+
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~-~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~ 1496 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLT-LQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 1496 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHH-HHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHH
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHH-HHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHH
Confidence 4455554 367999999999999865 44444444433322 22222221 113589999954333
Q ss_pred HHHc--CCCCcccccceEEEEccccccccc
Q 031654 122 LLER--GRVSLQMIIRYLALKEAADQTLDM 149 (155)
Q Consensus 122 ~l~~--~~~~l~~l~~~lVlDEa~D~ll~~ 149 (155)
.|.. ..+.-..+ +.+|+|.+ ..|...
T Consensus 1497 ~l~~~~~~~~s~~~-~~vvvDsv-~al~~~ 1524 (1706)
T 3cmw_A 1497 ALEICDALARSGAV-DVIVVDSV-AALTPK 1524 (1706)
T ss_dssp HHHHHHHHHHHTCC-SEEEESCS-TTCCCT
T ss_pred HHHHHHHHHHcCCC-CEEEEccH-HhCCcc
Confidence 2221 11222356 88999999 777643
No 482
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=57.16 E-value=3.3 Score=34.54 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=14.0
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
.-+.+.+++|+|||...
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 45788999999999863
No 483
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=57.01 E-value=7.4 Score=34.30 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=14.5
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
..+++.+.+|+|||.+
T Consensus 157 QsIiisGESGAGKTe~ 172 (795)
T 1w7j_A 157 QSIIVSGESGAGKTVS 172 (795)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEeCCCCCCcchH
Confidence 4699999999999987
No 484
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=57.01 E-value=5.6 Score=34.94 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=19.6
Q ss_pred HHHHHHHHHhc-C--CcEEEEccCCCCcchh
Q 031654 55 VQRHATSILVA-G--RDLMACAQTGSRKTTP 82 (155)
Q Consensus 55 iQ~~~i~~~l~-g--~dvl~~a~TGsGKT~~ 82 (155)
+=..|+..++. + ..+++.+.+|+|||.+
T Consensus 158 iA~~Ay~~m~~~~~nQsIiisGESGAGKTe~ 188 (770)
T 1w9i_A 158 ISDVAYRSMLDDRQNQSLLITGESGAGKTEN 188 (770)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHHHHHhhcCCcEEEEecCCCCcchHH
Confidence 33345554443 3 4699999999999987
No 485
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=56.80 E-value=5.5 Score=32.35 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=14.3
Q ss_pred CcEEEEccCCCCcchhh
Q 031654 67 RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~y 83 (155)
+.+++++++|+|||...
T Consensus 100 ~vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTA 116 (432)
T ss_dssp CCEEEECCSSSSTTHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999754
No 486
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=56.74 E-value=5.6 Score=35.24 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=20.0
Q ss_pred HHHHHHHHHhc-C--CcEEEEccCCCCcchhh
Q 031654 55 VQRHATSILVA-G--RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 55 iQ~~~i~~~l~-g--~dvl~~a~TGsGKT~~y 83 (155)
+=..|+..++. + ..|++.+.+|+|||.+.
T Consensus 155 iA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 155 VADNAYQNMVTDRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HHHHHHHHHHHHTSEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHhcCCCcEEEEeCCCCCCchhhH
Confidence 33445544443 3 46999999999999873
No 487
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=56.67 E-value=3.9 Score=27.21 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=13.1
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.|++|+|||.-
T Consensus 4 ki~~vG~~~~GKSsl 18 (166)
T 3q72_A 4 KVLLLGAPGVGKSAL 18 (166)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999974
No 488
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=56.63 E-value=4 Score=27.24 Aligned_cols=15 Identities=27% Similarity=0.415 Sum_probs=12.9
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.+++|+|||.-
T Consensus 4 ki~ivG~~~~GKSsl 18 (169)
T 3q85_A 4 KVMLVGESGVGKSTL 18 (169)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999963
No 489
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=56.50 E-value=3.9 Score=27.46 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=13.9
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
-.+++.|++|+|||.-
T Consensus 15 ~~i~v~G~~~~GKssl 30 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSL 30 (179)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999974
No 490
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=56.45 E-value=3.8 Score=27.60 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=13.3
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.|++|+|||.-
T Consensus 11 ~i~v~G~~~~GKssl 25 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSL 25 (181)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999973
No 491
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=56.39 E-value=2.3 Score=37.31 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCcchh
Q 031654 65 AGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 65 ~g~dvl~~a~TGsGKT~~ 82 (155)
.++.+++.+|+|+|||..
T Consensus 510 ~~~~vLL~GppGtGKT~L 527 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCCCBCCTTSSHHHH
T ss_pred CCceeEEECCCCCCHHHH
Confidence 467899999999999984
No 492
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=56.34 E-value=4.2 Score=32.75 Aligned_cols=19 Identities=11% Similarity=-0.048 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCcchhhh
Q 031654 66 GRDLMACAQTGSRKTTPFC 84 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~yl 84 (155)
|.-+.+.+|+|+|||.-..
T Consensus 178 Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHH
Confidence 3568899999999997544
No 493
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=56.20 E-value=2.5 Score=29.16 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=14.0
Q ss_pred CcEEEEccCCCCcchh
Q 031654 67 RDLMACAQTGSRKTTP 82 (155)
Q Consensus 67 ~dvl~~a~TGsGKT~~ 82 (155)
-.+++.|.+|+|||..
T Consensus 22 ~ki~vvG~~~~GKSsl 37 (190)
T 3con_A 22 YKLVVVGAGGVGKSAL 37 (190)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECcCCCCHHHH
Confidence 4799999999999974
No 494
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=56.18 E-value=5.9 Score=35.78 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=20.2
Q ss_pred HHHHHHHHHhc-C--CcEEEEccCCCCcchhh
Q 031654 55 VQRHATSILVA-G--RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 55 iQ~~~i~~~l~-g--~dvl~~a~TGsGKT~~y 83 (155)
+=..|+..++. + ..|++.|.+|+|||.+.
T Consensus 132 iA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 132 VTEGAYRSMLQDREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECBTTSSHHHHH
T ss_pred HhHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 43445554442 3 46999999999999873
No 495
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=56.12 E-value=4.7 Score=27.17 Aligned_cols=17 Identities=18% Similarity=0.014 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCCcchh
Q 031654 66 GRDLMACAQTGSRKTTP 82 (155)
Q Consensus 66 g~dvl~~a~TGsGKT~~ 82 (155)
...+++.+++|+|||..
T Consensus 8 ~~~i~v~G~~~~GKssl 24 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTL 24 (178)
T ss_dssp CCEEEEESCTTTTHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 35789999999999974
No 496
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=56.11 E-value=6.8 Score=31.10 Aligned_cols=43 Identities=19% Similarity=0.101 Sum_probs=27.3
Q ss_pred HHHhHHhCCCCCC-----CHHHHHHHHHHhcCCcEEEEccCCCCcchh
Q 031654 40 LRNKPRTYKYVKP-----TPVQRHATSILVAGRDLMACAQTGSRKTTP 82 (155)
Q Consensus 40 l~~~l~~~g~~~p-----t~iQ~~~i~~~l~g~dvl~~a~TGsGKT~~ 82 (155)
++..+++.||... +..-...+.....|.-+.+.+|+|+|||..
T Consensus 184 ~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~~~G~~~~lvG~sG~GKSTL 231 (358)
T 2rcn_A 184 QMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSL 231 (358)
T ss_dssp HHHHHHTTTCCEEECBTTTTBTHHHHHHHHTTSEEEEECCTTSSHHHH
T ss_pred HHHHHHhCCCcEEEEecCCCcCHHHHHHhcCCCEEEEECCCCccHHHH
Confidence 3444556777521 111123344457899999999999999974
No 497
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=56.10 E-value=4.1 Score=27.05 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=13.2
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.+++|+|||..
T Consensus 8 ~i~v~G~~~~GKssl 22 (170)
T 1r2q_A 8 KLVLLGESAVGKSSL 22 (170)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999974
No 498
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=56.10 E-value=4.1 Score=27.19 Aligned_cols=15 Identities=13% Similarity=0.074 Sum_probs=13.3
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
.+++.+++|+|||.-
T Consensus 8 ~i~v~G~~~~GKssl 22 (170)
T 1z08_A 8 KVVLLGEGCVGKTSL 22 (170)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 589999999999974
No 499
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=56.05 E-value=5.8 Score=34.88 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=20.4
Q ss_pred HHHHHHHHHhc-C--CcEEEEccCCCCcchhh
Q 031654 55 VQRHATSILVA-G--RDLMACAQTGSRKTTPF 83 (155)
Q Consensus 55 iQ~~~i~~~l~-g--~dvl~~a~TGsGKT~~y 83 (155)
+=..|+..++. + ..|++.+.+|+|||.+.
T Consensus 157 iA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 157 ISDNAYQYMLTDRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHhhCCCceEEEeCCCCCCCchHH
Confidence 44445554442 3 46999999999999874
No 500
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=56.00 E-value=4.2 Score=27.48 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=13.1
Q ss_pred cEEEEccCCCCcchh
Q 031654 68 DLMACAQTGSRKTTP 82 (155)
Q Consensus 68 dvl~~a~TGsGKT~~ 82 (155)
-+++.+++|+|||.-
T Consensus 5 ~v~lvG~~gvGKStL 19 (165)
T 2wji_A 5 EIALIGNPNVGKSTI 19 (165)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999974
Done!