BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031655
(155 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 12/150 (8%)
Query: 1 MEKFLNDKSVREAIGVGDIEFVSCSPTVYQAMLV--DWMRNLEVGIPGLLEDGVKLLVYA 58
++ +LN V+EA+G + SC+ + + L DWM+ + LL + +LVYA
Sbjct: 275 IDDYLNQDYVKEAVGAEVDHYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYA 334
Query: 59 GEYDLICNWLGNSRWVHAMEWSGQKDFVA------SPEIPFEVDGSEAGVLKTNGPLSFL 112
G+ D ICNWLGN W + W ++F + + I EV AG +K+ ++L
Sbjct: 335 GDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEV----AGEVKSYKHFTYL 390
Query: 113 KVHDSGHMVPMDQPKAALEMLRRWMEGSLS 142
+V + GHMVP D P+ AL M+ W+ G S
Sbjct: 391 RVFNGGHMVPFDVPENALSMVNEWIHGGFS 420
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 12/150 (8%)
Query: 1 MEKFLNDKSVREAIGVGDIEFVSCSPTVYQAMLV--DWMRNLEVGIPGLLEDGVKLLVYA 58
++ +LN V+EA+G + SC+ + + L DWM+ + LL + +LVYA
Sbjct: 275 IDDYLNQDYVKEAVGAEVDHYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYA 334
Query: 59 GEYDLICNWLGNSRWVHAMEWSGQKDFVA------SPEIPFEVDGSEAGVLKTNGPLSFL 112
G+ D ICNWLGN W + W ++F + + I EV AG +K+ ++L
Sbjct: 335 GDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEV----AGEVKSYKHFTYL 390
Query: 113 KVHDSGHMVPMDQPKAALEMLRRWMEGSLS 142
+V + GHMVP D P+ AL M+ W+ G S
Sbjct: 391 RVFNGGHMVPFDVPENALSMVNEWIHGGFS 420
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 56.6 bits (135), Expect = 6e-09, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 54/91 (59%), Gaps = 10/91 (10%)
Query: 44 IPGLLEDGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFE-------VD 96
+PGLLE G++++++ G+ DLICN G + ++W G K F + + F+ D
Sbjct: 365 LPGLLESGIEIVLFNGDKDLICNNKGVLDTIDNLKWGGIKGF-SDDAVSFDWIHKSKSTD 423
Query: 97 GSE--AGVLKTNGPLSFLKVHDSGHMVPMDQ 125
SE +G +K + L+F+ V+++ HMVP D+
Sbjct: 424 DSEEFSGYVKYDRNLTFVSVYNASHMVPFDK 454
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 74/146 (50%), Gaps = 20/146 (13%)
Query: 4 FLNDKSVREAIGVGDI--EFVSCSPTV-------YQAMLVDWMRNLEVGIPGLLEDGVKL 54
+LN+ VR+A+ + + ++ C+ V Y++M +++ L ++
Sbjct: 312 YLNNPYVRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLS-------SQKYQI 364
Query: 55 LVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSE--AGVLKTNGPLSFL 112
L+Y G+ D+ CN++G+ +V ++ + + + P + D E AG +K ++FL
Sbjct: 365 LLYNGDVDMACNFMGDEWFVDSL--NQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHIAFL 422
Query: 113 KVHDSGHMVPMDQPKAALEMLRRWME 138
+ +GHMVP D+P AA M R++
Sbjct: 423 TIKGAGHMVPTDKPLAAFTMFSRFLN 448
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 74/146 (50%), Gaps = 20/146 (13%)
Query: 4 FLNDKSVREAIGVGDI--EFVSCSPTV-------YQAMLVDWMRNLEVGIPGLLEDGVKL 54
+LN+ VR+A+ + + ++ C+ V Y++M +++ L ++
Sbjct: 14 YLNNPYVRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLS-------SQKYQI 66
Query: 55 LVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSE--AGVLKTNGPLSFL 112
L+Y G+ D+ CN++G+ +V ++ + + + P + D E AG +K ++FL
Sbjct: 67 LLYNGDVDMACNFMGDEWFVDSL--NQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHIAFL 124
Query: 113 KVHDSGHMVPMDQPKAALEMLRRWME 138
+ +GHMVP D+P AA M R++
Sbjct: 125 TIKGAGHMVPTDKPLAAFTMFSRFLN 150
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 3 KFLNDKSVREAI-----GVGDIEFVSCSPTVYQAMLVDWMRNLEVGIP---GLLEDGVKL 54
+LN V+ A+ G+ + + CS T++ W + + +P L++ G+++
Sbjct: 14 NYLNLPEVQTALHANVSGIVEYPWTVCSNTIFD----QWGQAADDLLPVYRELIQAGLRV 69
Query: 55 LVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGV----LKTNGPLS 110
VY+G+ D + R + A+E + + P+ + +E V ++ G L+
Sbjct: 70 WVYSGDTDSVVPVSSTRRSLAALELPVKTSW-----YPWYMAPTEREVGGWSVQYEG-LT 123
Query: 111 FLKVHDSGHMVPMDQPKAALEMLRRWMEG 139
++ V +GH+VP+ +P A + +++++G
Sbjct: 124 YVTVRGAGHLVPVHRPAQAFLLFKQFLKG 152
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
Query: 4 FLNDKSVREAI-----GVGDIEFVSCSPTVYQAMLVDWMRNLEVGIPGLLEDGVKLLVYA 58
+ N + V+ A+ G + + +CS T+ D R++ L+ G+++ V++
Sbjct: 13 YYNRRDVQMALHANVTGAMNYTWATCSDTI-NTHWHDAPRSMLPIYRELIAAGLRIWVFS 71
Query: 59 GEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSG 118
G+ D + + A+ + P+ D G + L+ + V +G
Sbjct: 72 GDTDAVVPLTATRYSIGALGLPTTTSW-----YPWYDDQEVGGWSQVYKGLTLVSVRGAG 126
Query: 119 HMVPMDQPKAALEMLRRWMEG 139
H VP+ +P+ AL + + +++G
Sbjct: 127 HEVPLHRPRQALVLFQYFLQG 147
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
Query: 4 FLNDKSVREAI-----GVGDIEFVSCSPTVYQAMLVDWMRNLEVGIPGLLEDGVKLLVYA 58
+ N + V+ A+ G + + +CS T+ D R++ L+ G+++ V++
Sbjct: 13 YYNRRDVQMALHANVTGAMNYTWATCSDTI-NTHWHDAPRSMLPIYRELIAAGLRIWVFS 71
Query: 59 GEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSG 118
G+ D + + A+ + P+ D G + L+ + V +G
Sbjct: 72 GDTDAVVPLTATRYSIGALGLPTTTSW-----YPWYDDQEVGGWSQVYKGLTLVSVRGAG 126
Query: 119 HMVPMDQPKAALEMLRRWMEG 139
H VP+ +P+ AL + + +++G
Sbjct: 127 HEVPLHRPRQALVLFQYFLQG 147
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 33.5 bits (75), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
Query: 4 FLNDKSVREAI-----GVGDIEFVSCSPTVYQAMLVDWMRNLEVGIPGLLEDGVKLLVYA 58
+ N + V+ A+ G + + +CS T+ D R++ L+ G+++ V++
Sbjct: 15 YYNRRDVQMALHANVTGAMNYTWATCSDTI-NTHWHDAPRSMLPIYRELIAAGLRIWVFS 73
Query: 59 GEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSG 118
G+ D + + A+ + P+ D G + L+ + V +G
Sbjct: 74 GDTDAVVPLTATRYSIGALGLPTTTSW-----YPWYDDQEVGGWSQVYKGLTLVSVRGAG 128
Query: 119 HMVPMDQPKAALEMLRRWMEG 139
H VP+ +P+ AL + + +++G
Sbjct: 129 HEVPLHRPRQALVLFQYFLQG 149
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 33.1 bits (74), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
Query: 4 FLNDKSVREAI-----GVGDIEFVSCSPTVYQAMLVDWMRNLEVGIPGLLEDGVKLLVYA 58
+ N + V+ A+ G + + +CS T+ D R++ L+ G+++ V++
Sbjct: 13 YYNRRDVQMALHANVTGAMNYTWATCSDTI-NTHWHDAPRSMLPIYRELIAAGLRIWVFS 71
Query: 59 GEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSG 118
G+ D + + A+ + P+ D G + L+ + V +G
Sbjct: 72 GDTDAVVPLTATRYSIGALGLPTTTSW-----YPWYDDQEVGGWSQVYKGLTLVSVRGAG 126
Query: 119 HMVPMDQPKAALEMLRRWMEG 139
H VP+ +P+ AL + + +++G
Sbjct: 127 HEVPLHRPRQALVLFQYFLQG 147
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 65 CNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMD 124
C LG + A+ + +KDFV P++ ++ + + + + D GH MD
Sbjct: 477 CKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWIPHLKRGH-------IEDCGHWTQMD 529
Query: 125 QPKAALEMLRRWMEGSLSEVPAGS 148
+P ++L +W++ P S
Sbjct: 530 KPTEVNQILIKWLDSDARNPPVVS 553
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 65 CNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMD 124
C LG + A+ + +KDFV P++ ++ + + + + D GH MD
Sbjct: 258 CKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWIPHLKRGH-------IEDCGHWTQMD 310
Query: 125 QPKAALEMLRRWMEGSLSEVPAGS 148
+P ++L +W++ P S
Sbjct: 311 KPTEVNQILIKWLDSDARNPPVVS 334
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 65 CNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMD 124
C LG + A+ + +KDFV P++ ++ + + + + D GH MD
Sbjct: 273 CKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWIPHLKRGH-------IEDCGHWTQMD 325
Query: 125 QPKAALEMLRRWMEG 139
+P ++L +W++
Sbjct: 326 KPTEVNQILIKWLDS 340
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 14/90 (15%)
Query: 65 CNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLK---VHDSGHMV 121
C LG V A+ + +KD V PE+ ++ + FLK + D GH
Sbjct: 476 CKGLGRKILVPALMVTAEKDIVLRPEMSKNMEKW----------IPFLKRGHIEDCGHWT 525
Query: 122 PMDQPKAALEMLRRWMEGSLSEVPAGSGKL 151
+++P ++L +W++ + P+ + K+
Sbjct: 526 QIEKPTEVNQILIKWLQTEVQN-PSVTSKI 554
>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
pdb|2D4W|B Chain B, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
Length = 504
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKD 84
G+ + + GE D+I NW + RW +ME SG+++
Sbjct: 449 GIAVGFWKGEQDVIDNWAEDKRWSPSME-SGERE 481
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 55 LVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKT 105
+V E +L C LG V E GQ+ AS + F DG+E G+L T
Sbjct: 26 VVSGAEAELKCVVLGEPPPVVVWEKGGQQ-LAASERLSFPADGAEHGLLLT 75
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 55 LVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKT 105
+V E +L C LG V E GQ+ AS + F DG+E G+L T
Sbjct: 25 VVSGAEAELKCVVLGEPPPVVVWEKGGQQ-LAASERLSFPADGAEHGLLLT 74
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 55 LVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKT 105
+V E +L C LG V E GQ+ AS + F DG+E G+L T
Sbjct: 26 VVSGAEAELKCVVLGEPPPVVVWEKGGQQ-LAASERLSFPADGAEHGLLLT 75
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 114 VHDSGHMVPMDQPKAALEMLR 134
V SGH V DQP+A +E++R
Sbjct: 304 VEKSGHSVQSDQPRALIEIVR 324
>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop
Deletion) From Arabidopsis Thaliana
Length = 152
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 18 DIEFVSCSPTVYQAMLVDWMRNLEVGIPGLLEDGVKLLVYAGEYDLICNWLGNSRWVHAM 77
D+ V + TV +A+ + + N G P + ED KL+ +YDL+ G+S W
Sbjct: 16 DLHVVKPTTTVDEALEL-LVENRITGFPVIDEDW-KLVGLVSDYDLLALDSGDSTW---- 69
Query: 78 EWSGQKDFVASPEIPFEVDGSEAGVLKTNGPL 109
K F A ++ + +G G L T PL
Sbjct: 70 -----KTFNAVQKLLSKTNGKLVGDLMTPAPL 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,165,461
Number of Sequences: 62578
Number of extensions: 222352
Number of successful extensions: 475
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 21
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)