Query 031655
Match_columns 155
No_of_seqs 147 out of 1144
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 03:33:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00472 serine carboxypeptida 100.0 4.6E-41 9.9E-46 286.6 12.5 142 1-142 314-461 (462)
2 KOG1282 Serine carboxypeptidas 100.0 2.8E-39 6.1E-44 273.2 13.0 138 2-145 311-453 (454)
3 PF00450 Peptidase_S10: Serine 100.0 1.1E-39 2.4E-44 271.6 8.1 135 2-139 277-415 (415)
4 PLN02213 sinapoylglucose-malat 100.0 1E-38 2.2E-43 261.0 11.7 132 2-142 184-319 (319)
5 PLN03016 sinapoylglucose-malat 100.0 6E-37 1.3E-41 259.3 12.1 132 2-142 298-433 (433)
6 PLN02209 serine carboxypeptida 100.0 1.2E-36 2.6E-41 257.7 12.6 132 2-142 302-437 (437)
7 KOG1283 Serine carboxypeptidas 99.9 1.5E-26 3.3E-31 186.3 4.2 135 2-137 275-411 (414)
8 COG2939 Carboxypeptidase C (ca 99.8 6.9E-20 1.5E-24 155.3 5.6 139 2-140 348-491 (498)
9 TIGR03343 biphenyl_bphD 2-hydr 98.1 1.3E-05 2.8E-10 63.0 7.5 60 50-138 222-281 (282)
10 TIGR01738 bioH putative pimelo 98.0 2.9E-05 6.2E-10 58.3 6.8 60 49-137 186-245 (245)
11 PRK10349 carboxylesterase BioH 98.0 3.1E-05 6.7E-10 60.3 7.1 61 49-138 194-254 (256)
12 TIGR03611 RutD pyrimidine util 97.9 3.1E-05 6.8E-10 58.9 6.8 60 50-138 197-256 (257)
13 TIGR02427 protocat_pcaD 3-oxoa 97.9 4.6E-05 9.9E-10 57.3 7.4 60 50-138 192-251 (251)
14 PRK03204 haloalkane dehalogena 97.9 2.3E-05 5.1E-10 62.7 5.9 58 51-137 227-285 (286)
15 TIGR03056 bchO_mg_che_rel puta 97.9 3.3E-05 7.2E-10 60.0 6.6 59 51-138 220-278 (278)
16 PLN02679 hydrolase, alpha/beta 97.8 4.2E-05 9E-10 63.4 6.5 65 51-140 292-357 (360)
17 PRK10673 acyl-CoA esterase; Pr 97.8 5.5E-05 1.2E-09 58.4 6.7 60 51-139 195-254 (255)
18 PRK03592 haloalkane dehalogena 97.8 3.3E-05 7.3E-10 61.5 5.0 65 51-143 228-292 (295)
19 PRK00870 haloalkane dehalogena 97.8 6.5E-05 1.4E-09 60.2 6.4 68 47-141 235-302 (302)
20 PLN02824 hydrolase, alpha/beta 97.8 5.8E-05 1.3E-09 60.1 6.1 60 51-139 234-293 (294)
21 PRK07581 hypothetical protein; 97.8 9.7E-05 2.1E-09 60.2 7.3 60 50-138 274-334 (339)
22 TIGR01250 pro_imino_pep_2 prol 97.7 0.00013 2.9E-09 56.1 7.2 62 47-138 227-288 (288)
23 PLN02965 Probable pheophorbida 97.7 0.00011 2.3E-09 57.5 6.4 60 50-138 192-251 (255)
24 PHA02857 monoglyceride lipase; 97.7 0.00011 2.5E-09 57.7 6.3 63 50-140 208-273 (276)
25 PRK08775 homoserine O-acetyltr 97.7 7.3E-05 1.6E-09 61.3 5.2 61 51-139 277-338 (343)
26 PLN03084 alpha/beta hydrolase 97.6 0.00014 3.1E-09 61.2 6.7 58 51-138 325-382 (383)
27 TIGR02240 PHA_depoly_arom poly 97.6 0.00013 2.8E-09 57.6 6.1 60 51-140 207-266 (276)
28 KOG1454 Predicted hydrolase/ac 97.6 0.00017 3.7E-09 59.5 6.5 61 51-140 264-324 (326)
29 PLN02385 hydrolase; alpha/beta 97.6 0.0002 4.3E-09 58.8 6.5 64 51-141 279-346 (349)
30 PLN02298 hydrolase, alpha/beta 97.5 0.00031 6.8E-09 57.0 7.0 67 51-144 251-321 (330)
31 PLN02578 hydrolase 97.5 0.00044 9.6E-09 57.0 7.4 60 50-139 295-354 (354)
32 PLN03087 BODYGUARD 1 domain co 97.4 0.00059 1.3E-08 59.2 7.3 60 51-139 418-478 (481)
33 PRK00175 metX homoserine O-ace 97.3 0.00042 9.2E-09 57.8 5.8 65 51-140 309-374 (379)
34 KOG4178 Soluble epoxide hydrol 97.3 0.00046 9.9E-09 56.7 5.7 62 50-139 257-319 (322)
35 TIGR01392 homoserO_Ac_trn homo 97.3 0.00044 9.4E-09 56.9 5.2 63 51-138 288-351 (351)
36 PF12697 Abhydrolase_6: Alpha/ 97.2 0.00074 1.6E-08 49.6 5.5 52 50-130 175-226 (228)
37 PF08386 Abhydrolase_4: TAP-li 97.2 0.0023 5E-08 44.1 7.0 65 51-144 34-98 (103)
38 PRK06489 hypothetical protein; 97.2 0.0016 3.4E-08 53.8 7.2 59 51-139 292-356 (360)
39 PRK06765 homoserine O-acetyltr 97.1 0.0019 4.2E-08 54.5 7.5 65 50-139 322-387 (389)
40 TIGR03695 menH_SHCHC 2-succiny 97.1 0.0017 3.6E-08 48.4 6.5 59 50-138 193-251 (251)
41 PLN02894 hydrolase, alpha/beta 97.0 0.0017 3.6E-08 54.9 6.2 60 51-139 325-384 (402)
42 PRK14875 acetoin dehydrogenase 97.0 0.0016 3.5E-08 53.2 5.8 58 50-139 313-370 (371)
43 PRK10749 lysophospholipase L2; 97.0 0.0017 3.7E-08 53.0 5.9 68 51-140 259-329 (330)
44 PRK11126 2-succinyl-6-hydroxy- 96.9 0.0024 5.3E-08 48.8 6.0 54 50-138 187-240 (242)
45 PLN02652 hydrolase; alpha/beta 96.9 0.0029 6.2E-08 53.5 6.4 64 51-141 324-388 (395)
46 TIGR01607 PST-A Plasmodium sub 96.8 0.0056 1.2E-07 50.3 7.1 62 51-139 270-332 (332)
47 PF00561 Abhydrolase_1: alpha/ 96.7 0.0039 8.5E-08 46.6 5.7 57 49-134 173-229 (230)
48 PRK11460 putative hydrolase; P 96.6 0.0026 5.6E-08 49.7 3.7 74 50-148 147-220 (232)
49 PF00326 Peptidase_S9: Prolyl 96.5 0.011 2.5E-07 44.8 6.7 64 50-138 143-207 (213)
50 PRK05855 short chain dehydroge 96.2 0.0068 1.5E-07 52.3 4.8 59 51-139 233-291 (582)
51 PLN02980 2-oxoglutarate decarb 96.2 0.013 2.8E-07 57.7 6.7 74 50-141 1567-1640(1655)
52 PRK10566 esterase; Provisional 96.0 0.012 2.6E-07 45.4 4.7 62 51-139 186-247 (249)
53 PLN02511 hydrolase 96.0 0.011 2.4E-07 49.6 4.8 61 50-139 297-364 (388)
54 PLN02211 methyl indole-3-aceta 95.8 0.032 7E-07 44.4 6.5 59 51-139 211-269 (273)
55 PLN02872 triacylglycerol lipas 95.4 0.045 9.7E-07 46.4 6.3 61 51-139 325-388 (395)
56 COG0596 MhpC Predicted hydrola 95.4 0.068 1.5E-06 39.1 6.7 62 48-137 218-279 (282)
57 PF02230 Abhydrolase_2: Phosph 95.3 0.034 7.4E-07 42.6 4.8 59 51-138 155-213 (216)
58 KOG4409 Predicted hydrolase/ac 95.3 0.057 1.2E-06 45.1 6.2 63 48-138 300-362 (365)
59 TIGR01249 pro_imino_pep_1 prol 95.2 0.076 1.6E-06 42.7 6.8 51 51-132 248-298 (306)
60 PF12695 Abhydrolase_5: Alpha/ 95.2 0.057 1.2E-06 37.7 5.4 47 46-120 99-145 (145)
61 COG0400 Predicted esterase [Ge 95.1 0.037 7.9E-07 43.0 4.4 56 50-131 145-200 (207)
62 PF03583 LIP: Secretory lipase 95.1 0.083 1.8E-06 42.8 6.7 68 51-143 219-288 (290)
63 KOG2382 Predicted alpha/beta h 94.8 0.087 1.9E-06 43.4 6.0 60 51-139 253-312 (315)
64 TIGR03100 hydr1_PEP hydrolase, 94.5 0.086 1.9E-06 41.9 5.3 70 47-138 203-273 (274)
65 COG1506 DAP2 Dipeptidyl aminop 94.5 0.087 1.9E-06 47.1 5.8 58 51-135 551-608 (620)
66 TIGR01836 PHA_synth_III_C poly 94.4 0.11 2.3E-06 42.8 5.7 61 51-139 286-349 (350)
67 PF07519 Tannase: Tannase and 94.3 0.12 2.6E-06 44.9 6.1 90 40-146 342-433 (474)
68 PRK10985 putative hydrolase; P 93.7 0.2 4.4E-06 40.7 6.1 46 51-125 255-300 (324)
69 PRK13604 luxD acyl transferase 92.9 0.26 5.6E-06 40.6 5.5 56 51-134 202-257 (307)
70 COG2267 PldB Lysophospholipase 92.7 0.33 7.2E-06 39.5 5.9 65 50-141 227-295 (298)
71 TIGR01838 PHA_synth_I poly(R)- 92.6 0.19 4.1E-06 44.3 4.6 49 51-128 415-463 (532)
72 PF08840 BAAT_C: BAAT / Acyl-C 92.3 0.21 4.6E-06 38.5 4.1 49 50-121 114-163 (213)
73 PRK05077 frsA fermentation/res 91.6 0.59 1.3E-05 39.8 6.4 58 51-140 355-412 (414)
74 PF06821 Ser_hydrolase: Serine 89.6 0.65 1.4E-05 34.7 4.4 43 51-123 114-156 (171)
75 PRK07868 acyl-CoA synthetase; 88.9 0.98 2.1E-05 42.6 5.9 68 51-147 297-372 (994)
76 PRK11071 esterase YqiA; Provis 87.7 1.7 3.7E-05 32.7 5.7 55 50-138 135-189 (190)
77 KOG1552 Predicted alpha/beta h 87.5 1.1 2.5E-05 35.9 4.6 60 51-139 192-251 (258)
78 PLN02442 S-formylglutathione h 84.3 1.9 4.2E-05 34.5 4.6 48 50-122 216-264 (283)
79 PF01738 DLH: Dienelactone hyd 81.4 4.3 9.3E-05 30.7 5.4 64 47-135 141-209 (218)
80 KOG2551 Phospholipase/carboxyh 81.4 5.4 0.00012 31.5 5.9 46 51-126 163-208 (230)
81 COG1073 Hydrolases of the alph 81.0 6 0.00013 30.3 6.1 61 52-139 233-296 (299)
82 PF03959 FSH1: Serine hydrolas 78.5 2.3 5.1E-05 32.5 3.1 49 51-128 161-209 (212)
83 PF10142 PhoPQ_related: PhoPQ- 74.4 14 0.0003 31.3 6.8 66 51-144 262-328 (367)
84 COG2945 Predicted hydrolase of 72.6 4 8.8E-05 31.7 2.9 56 51-137 149-204 (210)
85 COG3208 GrsT Predicted thioest 72.4 11 0.00023 30.2 5.3 59 51-138 176-234 (244)
86 KOG2984 Predicted hydrolase [G 70.5 10 0.00023 29.9 4.8 108 3-139 149-275 (277)
87 PRK10115 protease 2; Provision 69.2 11 0.00024 34.3 5.4 28 51-78 605-633 (686)
88 KOG3043 Predicted hydrolase re 68.3 15 0.00033 29.2 5.3 77 46-138 159-238 (242)
89 PF05448 AXE1: Acetyl xylan es 67.1 13 0.00027 30.7 5.0 47 51-125 262-308 (320)
90 PF10503 Esterase_phd: Esteras 65.6 5.6 0.00012 31.1 2.5 28 50-77 168-195 (220)
91 KOG1455 Lysophospholipase [Lip 64.9 27 0.00058 28.9 6.3 63 50-139 245-311 (313)
92 KOG2564 Predicted acetyltransf 63.8 9.5 0.00021 31.5 3.5 42 107-148 294-336 (343)
93 PF03096 Ndr: Ndr family; Int 60.4 4.1 9E-05 33.2 0.9 62 51-141 219-280 (283)
94 PRK05371 x-prolyl-dipeptidyl a 58.5 33 0.00072 31.8 6.5 29 50-78 454-482 (767)
95 TIGR01840 esterase_phb esteras 58.4 7.6 0.00017 29.3 2.1 29 52-80 169-197 (212)
96 PF07849 DUF1641: Protein of u 58.4 3.7 8E-05 23.6 0.2 13 4-16 19-31 (42)
97 COG1647 Esterase/lipase [Gener 57.5 26 0.00057 27.8 4.9 61 51-138 181-242 (243)
98 KOG4667 Predicted esterase [Li 57.3 17 0.00036 29.0 3.8 51 48-127 196-246 (269)
99 TIGR02821 fghA_ester_D S-formy 56.8 15 0.00032 29.0 3.6 48 51-123 211-259 (275)
100 PF07859 Abhydrolase_3: alpha/ 52.0 18 0.00038 26.8 3.1 44 51-121 166-209 (211)
101 TIGR01849 PHB_depoly_PhaZ poly 50.3 33 0.00071 29.4 4.8 63 52-138 339-404 (406)
102 KOG3253 Predicted alpha/beta h 46.8 40 0.00087 30.8 4.9 33 46-78 299-331 (784)
103 KOG2100 Dipeptidyl aminopeptid 45.9 71 0.0015 29.6 6.5 70 51-146 682-752 (755)
104 smart00728 ChW Clostridial hyd 40.0 26 0.00057 20.5 1.9 27 86-112 4-30 (46)
105 KOG2931 Differentiation-relate 39.6 57 0.0012 27.1 4.4 35 108-142 274-308 (326)
106 PF05414 DUF1717: Viral domain 39.2 20 0.00044 24.0 1.5 12 50-61 39-50 (101)
107 TIGR00190 thiC thiamine biosyn 36.8 27 0.00059 30.0 2.2 31 111-142 258-288 (423)
108 COG4569 MhpF Acetaldehyde dehy 35.4 35 0.00076 27.0 2.5 27 100-126 257-283 (310)
109 COG3509 LpqC Poly(3-hydroxybut 32.3 1.4E+02 0.003 24.8 5.5 20 108-127 263-282 (312)
110 TIGR01839 PHA_synth_II poly(R) 32.3 92 0.002 28.0 4.8 28 51-78 441-468 (560)
111 COG4536 CorB Putative Mg2+ and 30.6 37 0.00079 29.1 2.0 58 39-96 220-281 (423)
112 TIGR02679 conserved hypothetic 29.7 44 0.00095 28.4 2.4 41 43-96 290-330 (385)
113 PF05705 DUF829: Eukaryotic pr 28.6 1.1E+02 0.0024 23.3 4.4 61 51-136 178-239 (240)
114 PF02739 5_3_exonuc_N: 5'-3' e 28.2 40 0.00088 25.0 1.7 15 49-63 123-137 (169)
115 PF09664 DUF2399: Protein of u 28.1 55 0.0012 24.0 2.4 43 20-63 21-77 (152)
116 cd01427 HAD_like Haloacid deha 27.5 1.2E+02 0.0026 19.7 4.0 38 37-79 26-63 (139)
117 COG3545 Predicted esterase of 25.5 82 0.0018 24.0 2.9 57 51-138 117-177 (181)
118 PF06028 DUF915: Alpha/beta hy 24.7 2.5E+02 0.0053 22.4 5.7 65 49-139 182-254 (255)
119 COG4814 Uncharacterized protei 24.6 1.4E+02 0.003 24.4 4.2 73 49-139 214-286 (288)
120 PF00702 Hydrolase: haloacid d 23.8 77 0.0017 23.2 2.6 27 39-65 131-157 (215)
121 PF01624 MutS_I: MutS domain I 23.5 75 0.0016 21.6 2.3 22 40-61 66-87 (113)
122 PF07538 ChW: Clostridial hydr 22.3 56 0.0012 17.9 1.2 24 87-110 4-27 (36)
123 cd03109 DTBS Dethiobiotin synt 21.8 1.3E+02 0.0029 21.0 3.4 39 98-136 28-67 (134)
124 PRK13352 thiamine biosynthesis 21.2 76 0.0017 27.4 2.3 31 111-142 261-291 (431)
125 PRK10162 acetyl esterase; Prov 20.8 2.5E+02 0.0054 22.6 5.2 60 53-139 250-314 (318)
126 KOG1424 Predicted GTP-binding 20.8 73 0.0016 28.4 2.1 23 117-140 446-468 (562)
127 TIGR01689 EcbF-BcbF capsule bi 20.6 1.9E+02 0.0041 20.5 3.9 38 41-78 30-77 (126)
128 PF01964 ThiC: ThiC family; I 20.5 68 0.0015 27.6 1.8 31 111-142 257-287 (420)
129 KOG2112 Lysophospholipase [Lip 20.1 88 0.0019 24.4 2.2 28 51-78 144-171 (206)
No 1
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=100.00 E-value=4.6e-41 Score=286.55 Aligned_cols=142 Identities=42% Similarity=0.917 Sum_probs=135.8
Q ss_pred CccccCcHHHHHHhCCCCCCceecchhHhhhhhcccccchhchHHHHhhcCceEEEEecCCCccCchhhHHHHHhccccc
Q 031655 1 MEKFLNDKSVREAIGVGDIEFVSCSPTVYQAMLVDWMRNLEVGIPGLLEDGVKLLVYAGEYDLICNWLGNSRWVHAMEWS 80 (155)
Q Consensus 1 l~~ylN~~~V~~aL~v~~~~w~~c~~~V~~~~~~d~~~~~~~~l~~LL~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~ 80 (155)
+++|||+|+||+||||++.+|+.|+..|+.++..|+++++.+.+++||++|+|||||+||.|++||+.|+++|+++|+|+
T Consensus 314 ~~~yLN~~~Vq~AL~v~~~~w~~c~~~V~~~~~~D~~~~~~~~l~~LL~~gikVLiYnGd~D~icn~~Gt~~wi~~L~w~ 393 (462)
T PTZ00472 314 TIAFMNREDVQSSLGVKPATWQSCNMEVNLMFEMDWMKNFNYTVPGLLEDGVRVMIYAGDMDFICNWIGNKAWTLALQWP 393 (462)
T ss_pred HHHHhCCHHHHHHhCCCCCCceeCCHHHHHHhhhccccchHHHHHHHHhcCceEEEEECCcCeecCcHhHHHHHHhCCCC
Confidence 35799999999999998778999999999999999998888899999999999999999999999999999999999999
Q ss_pred cccccccCCCeee-eeCCEeeeEEEEeC-----ceeEEEEcCccccCcCCCcHHHHHHHHHHHcCCCC
Q 031655 81 GQKDFVASPEIPF-EVDGSEAGVLKTNG-----PLSFLKVHDSGHMVPMDQPKAALEMLRRWMEGSLS 142 (155)
Q Consensus 81 g~~~f~~~~~~~w-~~~g~~~G~~~~~~-----~ltf~~V~~AGHmvP~dqP~~~~~~~~~fl~~~~~ 142 (155)
|+++|++++|++| .++++++||+|+++ ||+|++|++||||||.|||+++++|+++|+.|+++
T Consensus 394 g~~~f~~a~~~~w~~~~~~v~G~vk~~~~~~~~~l~~~~V~~AGH~vp~d~P~~~~~~i~~fl~~~~~ 461 (462)
T PTZ00472 394 GNAEFNAAPDVPFSAVDGRWAGLVRSAASNTSSGFSFVQVYNAGHMVPMDQPAVALTMINRFLRNRPL 461 (462)
T ss_pred CccchhhcCccccEecCCEeceEEEEEecccCCCeEEEEECCCCccChhhHHHHHHHHHHHHHcCCCC
Confidence 9999999999999 57899999999999 99999999999999999999999999999999864
No 2
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-39 Score=273.20 Aligned_cols=138 Identities=31% Similarity=0.579 Sum_probs=124.2
Q ss_pred ccccCcHHHHHHhCCCC-C--CceecchhHhhhhhcccccchhchHHHHhhcC-ceEEEEecCCCccCchhhHHHHHhcc
Q 031655 2 EKFLNDKSVREAIGVGD-I--EFVSCSPTVYQAMLVDWMRNLEVGIPGLLEDG-VKLLVYAGEYDLICNWLGNSRWVHAM 77 (155)
Q Consensus 2 ~~ylN~~~V~~aL~v~~-~--~w~~c~~~V~~~~~~d~~~~~~~~l~~LL~~~-irVLiY~Gd~D~i~n~~g~~~~i~~l 77 (155)
++|||+++||+||||+. . +|+.||..|+..+..+ ..++.+.+..++.++ +|||||+||.|++||+.||++|+++|
T Consensus 311 ~~ylN~~~VrkALh~~~~~~~~W~~Cn~~v~~~~~~~-~~sm~p~~~~~~~~~~~rvliysGD~D~~~p~~gt~~~i~~L 389 (454)
T KOG1282|consen 311 EKYLNRPEVRKALHANKTSIGKWERCNDEVNYNYNDD-IKSMLPIHKKLIASGGYRVLIYSGDHDLVVPFLGTQAWIKSL 389 (454)
T ss_pred HHhcCCHHHHHHhCCCCCCCCcccccChhhhcccccC-ccchHHHHHHHhhcCceEEEEEeCCcceeCcchhhHHHHHhc
Confidence 46999999999999984 2 7999999998776543 457778888888755 99999999999999999999999999
Q ss_pred ccccccccccCCCeeeeeC-CEeeeEEEEeCceeEEEEcCccccCcCCCcHHHHHHHHHHHcCCCCCCC
Q 031655 78 EWSGQKDFVASPEIPFEVD-GSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAALEMLRRWMEGSLSEVP 145 (155)
Q Consensus 78 ~w~g~~~f~~~~~~~w~~~-g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~~~~~~fl~~~~~~~~ 145 (155)
+++ ..++|+||+.+ +|++||+++|++|+|++|+|||||||.|||++|+.|+++||.|++++..
T Consensus 390 ~~~-----~~~~~~pW~~~~~qvaG~~~~Y~~ltf~tVrGaGH~VP~~~p~~al~m~~~fl~g~~l~~~ 453 (454)
T KOG1282|consen 390 NLS-----ITDEWRPWYHKGGQVAGYTKTYGGLTFATVRGAGHMVPYDKPESALIMFQRFLNGQPLPST 453 (454)
T ss_pred cCc-----cccCccCCccCCCceeeeEEEecCEEEEEEeCCcccCCCCCcHHHHHHHHHHHcCCCCCCC
Confidence 955 46899999996 8999999999999999999999999999999999999999999999865
No 3
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=100.00 E-value=1.1e-39 Score=271.60 Aligned_cols=135 Identities=43% Similarity=0.888 Sum_probs=115.6
Q ss_pred ccccCcHHHHHHhCCC---CCCceecchhH-hhhhhcccccchhchHHHHhhcCceEEEEecCCCccCchhhHHHHHhcc
Q 031655 2 EKFLNDKSVREAIGVG---DIEFVSCSPTV-YQAMLVDWMRNLEVGIPGLLEDGVKLLVYAGEYDLICNWLGNSRWVHAM 77 (155)
Q Consensus 2 ~~ylN~~~V~~aL~v~---~~~w~~c~~~V-~~~~~~d~~~~~~~~l~~LL~~~irVLiY~Gd~D~i~n~~g~~~~i~~l 77 (155)
++|||+++||+||||+ ...|..|+..| +..+..|.+.++...+++||++++|||||+||.|++||+.|+++|+++|
T Consensus 277 ~~yln~~~Vr~aL~v~~~~~~~w~~~~~~V~~~~~~~d~~~~~~~~l~~lL~~~irVLiy~Gd~D~i~n~~Gt~~~i~~L 356 (415)
T PF00450_consen 277 EAYLNRPDVREALHVPVDSNVNWQSCNDAVNFNWLYDDFMPSSIPDLPELLDNGIRVLIYNGDLDLICNFLGTERWIDNL 356 (415)
T ss_dssp HHHHTSHHHHHHTT-STTTSSS--SB-HHHHHHCCTCCC-SBCHHHHHHHHHTT-EEEEEEETT-SSS-HHHHHHHHHCT
T ss_pred HHHhccHHHHHhhCCCcccCCcccccCcccccccccccccccchhhhhhhhhccceeEEeccCCCEEEEeccchhhhhcc
Confidence 5799999999999996 47999999999 5555678888999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHHHHHHHHHcC
Q 031655 78 EWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAALEMLRRWMEG 139 (155)
Q Consensus 78 ~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~~~~~~fl~~ 139 (155)
+|+++++|+.++++ .+++++||+|+++||||++|++||||||+|||+++++||++||.|
T Consensus 357 ~w~~~~~f~~~~~~---~~~~~~G~~k~~~~ltf~~V~~AGHmvP~dqP~~a~~m~~~fl~g 415 (415)
T PF00450_consen 357 NWSGKDGFRQWPRK---VNGQVAGYVKQYGNLTFVTVRGAGHMVPQDQPEAALQMFRRFLKG 415 (415)
T ss_dssp ECTEEEEEEEEEEE---TTCSEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHHHHHHCT
T ss_pred ccCccccccccccc---ccccccceeEEeccEEEEEEcCCcccChhhCHHHHHHHHHHHhcC
Confidence 99999887777666 688999999999999999999999999999999999999999986
No 4
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=100.00 E-value=1e-38 Score=260.98 Aligned_cols=132 Identities=23% Similarity=0.458 Sum_probs=114.8
Q ss_pred ccccCcHHHHHHhCCC---CCCceecchhHhhhhhcccccchhchHHHHhhcCceEEEEecCCCccCchhhHHHHHhccc
Q 031655 2 EKFLNDKSVREAIGVG---DIEFVSCSPTVYQAMLVDWMRNLEVGIPGLLEDGVKLLVYAGEYDLICNWLGNSRWVHAME 78 (155)
Q Consensus 2 ~~ylN~~~V~~aL~v~---~~~w~~c~~~V~~~~~~d~~~~~~~~l~~LL~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~ 78 (155)
++|||+++||+||||+ ..+|..||..|. +..|+..+.. .+..+|.+|+|||||+||.|++||+.|+++|+++|+
T Consensus 184 ~~ylN~~~V~~aL~v~~~~~~~w~~c~~~v~--~~~d~~~~~~-~~~~~l~~~i~VliY~Gd~D~icn~~g~~~wi~~L~ 260 (319)
T PLN02213 184 ECWANDESVREALHIEKGSKGKWARCNRTIP--YNHDIVSSIP-YHMNNSISGYRSLIYSGDHDIAVPFLATQAWIRSLN 260 (319)
T ss_pred HHHhCCHHHHHHhCcCCCCCCCCccCCcccc--cccccccchH-HHHHHHhcCceEEEEECCcCeeCCcHhHHHHHHhcC
Confidence 5799999999999997 368999999986 5556654333 333445578999999999999999999999999999
Q ss_pred cccccccccCCCeeeeeCCEeeeEEEEeCc-eeEEEEcCccccCcCCCcHHHHHHHHHHHcCCCC
Q 031655 79 WSGQKDFVASPEIPFEVDGSEAGVLKTNGP-LSFLKVHDSGHMVPMDQPKAALEMLRRWMEGSLS 142 (155)
Q Consensus 79 w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~-ltf~~V~~AGHmvP~dqP~~~~~~~~~fl~~~~~ 142 (155)
|+++. +|+||.++++++||+|++++ |+|++|+||||||| +||+++++|+++||.++++
T Consensus 261 w~~~~-----~~~~w~~~~~~~G~vk~y~~~ltf~~V~~AGHmV~-~qP~~al~m~~~fi~~~~~ 319 (319)
T PLN02213 261 YSPIH-----NWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQRWISGQPL 319 (319)
T ss_pred CCCCC-----CCccccCCCEeeeEEEEecCcceEEEEcCCCCCCC-cCHHHHHHHHHHHHcCCCC
Confidence 99864 48899999999999999986 99999999999998 6999999999999998753
No 5
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=100.00 E-value=6e-37 Score=259.32 Aligned_cols=132 Identities=23% Similarity=0.455 Sum_probs=115.0
Q ss_pred ccccCcHHHHHHhCCC---CCCceecchhHhhhhhcccccchhchHHHHhhcCceEEEEecCCCccCchhhHHHHHhccc
Q 031655 2 EKFLNDKSVREAIGVG---DIEFVSCSPTVYQAMLVDWMRNLEVGIPGLLEDGVKLLVYAGEYDLICNWLGNSRWVHAME 78 (155)
Q Consensus 2 ~~ylN~~~V~~aL~v~---~~~w~~c~~~V~~~~~~d~~~~~~~~l~~LL~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~ 78 (155)
++|||+++||+||||+ ..+|..|+..|. +..|...+. +.+..++.+|+|||||+||.|++||+.|+++|+++|+
T Consensus 298 ~~ylN~~~V~~aL~v~~~~~~~w~~cn~~v~--~~~d~~~~~-~~~~~~l~~~irVLiY~Gd~D~icn~~Gt~~wi~~L~ 374 (433)
T PLN03016 298 ECWANDESVREALHIEKGSKGKWARCNRTIP--YNHDIVSSI-PYHMNNSISGYRSLIYSGDHDIAVPFLATQAWIRSLN 374 (433)
T ss_pred HHHhCCHHHHHHhCCCCCCCCCCccCCcccc--cccccchhh-HHHHHHHhcCceEEEEECCccccCCcHhHHHHHHhCC
Confidence 5799999999999997 368999999986 555665433 3344455678999999999999999999999999999
Q ss_pred cccccccccCCCeeeeeCCEeeeEEEEeCc-eeEEEEcCccccCcCCCcHHHHHHHHHHHcCCCC
Q 031655 79 WSGQKDFVASPEIPFEVDGSEAGVLKTNGP-LSFLKVHDSGHMVPMDQPKAALEMLRRWMEGSLS 142 (155)
Q Consensus 79 w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~-ltf~~V~~AGHmvP~dqP~~~~~~~~~fl~~~~~ 142 (155)
|++.. +|+||.++++++||++++++ |||++|+||||||| +||++|++|+++||.++++
T Consensus 375 w~~~~-----~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp-~qP~~al~m~~~Fi~~~~l 433 (433)
T PLN03016 375 YSPIH-----NWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQRWISGQPL 433 (433)
T ss_pred CCCCC-----CcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC-CCHHHHHHHHHHHHcCCCC
Confidence 99864 58899999999999999975 99999999999998 7999999999999999764
No 6
>PLN02209 serine carboxypeptidase
Probab=100.00 E-value=1.2e-36 Score=257.69 Aligned_cols=132 Identities=23% Similarity=0.423 Sum_probs=114.0
Q ss_pred ccccCcHHHHHHhCCCC---CCceecchhHhhhhhcccccchhchHHHHhhcCceEEEEecCCCccCchhhHHHHHhccc
Q 031655 2 EKFLNDKSVREAIGVGD---IEFVSCSPTVYQAMLVDWMRNLEVGIPGLLEDGVKLLVYAGEYDLICNWLGNSRWVHAME 78 (155)
Q Consensus 2 ~~ylN~~~V~~aL~v~~---~~w~~c~~~V~~~~~~d~~~~~~~~l~~LL~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~ 78 (155)
+.|||+|+||+||||+. ..|..|+..+ .+..|.+.+....+ ++|.+|+|||||+||.|++||+.|+++|+++|+
T Consensus 302 ~~ylN~~~V~~aL~v~~~~~~~w~~~~~~~--~~~~d~~~~~~~~~-~~l~~girVLiY~GD~D~icn~~Gte~wi~~L~ 378 (437)
T PLN02209 302 ECWANNESVREALHVDKGSIGEWIRDHRGI--PYKSDIRSSIPYHM-NNSINGYRSLIFSGDHDITMPFQATQAWIKSLN 378 (437)
T ss_pred HHHhCCHHHHHHhCCCCCCCCCCccccchh--hcccchhhhHHHHH-HHHhcCceEEEEECCccccCCcHhHHHHHHhcC
Confidence 57999999999999983 3799998755 34556665443344 445579999999999999999999999999999
Q ss_pred cccccccccCCCeeeeeCCEeeeEEEEeCc-eeEEEEcCccccCcCCCcHHHHHHHHHHHcCCCC
Q 031655 79 WSGQKDFVASPEIPFEVDGSEAGVLKTNGP-LSFLKVHDSGHMVPMDQPKAALEMLRRWMEGSLS 142 (155)
Q Consensus 79 w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~-ltf~~V~~AGHmvP~dqP~~~~~~~~~fl~~~~~ 142 (155)
|+++. +|++|+++++++||+|+++| |+|++|+||||||| +||++|++|+++|+.++++
T Consensus 379 w~~~~-----~~~~w~~~~q~aG~vk~y~n~Ltfv~V~~AGHmVp-~qP~~al~m~~~fi~~~~l 437 (437)
T PLN02209 379 YSIID-----DWRPWMIKGQIAGYTRTYSNKMTFATVKGGGHTAE-YLPEESSIMFQRWISGQPL 437 (437)
T ss_pred CccCC-----CeeeeEECCEeeeEEEEeCCceEEEEEcCCCCCcC-cCHHHHHHHHHHHHcCCCC
Confidence 99864 57899999999999999996 99999999999998 6999999999999998764
No 7
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.5e-26 Score=186.32 Aligned_cols=135 Identities=35% Similarity=0.623 Sum_probs=125.7
Q ss_pred ccccCcHHHHHHhCCC--CCCceecchhHhhhhhcccccchhchHHHHhhcCceEEEEecCCCccCchhhHHHHHhcccc
Q 031655 2 EKFLNDKSVREAIGVG--DIEFVSCSPTVYQAMLVDWMRNLEVGIPGLLEDGVKLLVYAGEYDLICNWLGNSRWVHAMEW 79 (155)
Q Consensus 2 ~~ylN~~~V~~aL~v~--~~~w~~c~~~V~~~~~~d~~~~~~~~l~~LL~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w 79 (155)
+++||- -||++|+|. ...|-..+..|+.++..|+|+++...+.+||++|+.|.||+|+.|+||+++|+++|++.|.|
T Consensus 275 ~~lM~g-~vrkkLgIip~~~~wGgqsg~vFt~lq~dFMKPvi~~VdeLL~~Gv~V~VynG~lDlIc~T~G~~AWv~~l~w 353 (414)
T KOG1283|consen 275 SDLMNG-PVRKKLGIIPGGVKWGGQSGDVFTKLQGDFMKPVISKVDELLNNGVNVTVYNGQLDLICATMGTEAWVEKLEW 353 (414)
T ss_pred HHHhcc-cccccccccCCCCcccCcCCchHHHhhhhhcccHHHHHHHHHhCCceEEEEecccchhhcccchhhhhhheec
Confidence 456664 489999986 48999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHHHHHHHHH
Q 031655 80 SGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAALEMLRRWM 137 (155)
Q Consensus 80 ~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~~~~~~fl 137 (155)
++.+.|+..+|...+++-..+||.|+|+||.|.+|..||||||.|+|+.+..|++.+.
T Consensus 354 ~~~p~f~~~~r~~~~~s~~l~gy~ktyknl~f~wilraghmvp~Dnp~~a~hmlr~vt 411 (414)
T KOG1283|consen 354 SAKPSFQVSPRVGITVSRVLEGYEKTYKNLSFFWILRAGHMVPADNPAAASHMLRHVT 411 (414)
T ss_pred CCCCccccceeeeccceeecchhhhhhccceeEEeecccCcccCCCHHHHhhheeecc
Confidence 9999999999998888777899999999999999999999999999999999998654
No 8
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=99.79 E-value=6.9e-20 Score=155.27 Aligned_cols=139 Identities=28% Similarity=0.513 Sum_probs=125.1
Q ss_pred ccccCcHHHHHHhCCCCCCceecchhHhhhhh---cccccchhchHHHHhhcCceEEEEecCCCccCchhhHHHHHhccc
Q 031655 2 EKFLNDKSVREAIGVGDIEFVSCSPTVYQAML---VDWMRNLEVGIPGLLEDGVKLLVYAGEYDLICNWLGNSRWVHAME 78 (155)
Q Consensus 2 ~~ylN~~~V~~aL~v~~~~w~~c~~~V~~~~~---~d~~~~~~~~l~~LL~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~ 78 (155)
..|+|.+.++++++..-..|..|+..+...|. .++.+++...+..++.+++.+++|.||.|.+||+.|++.|..+|+
T Consensus 348 ld~~~~~~~~~~~~~~~d~~~~c~t~a~~~f~~~~~~~~~~~~~~~~~~lv~~~~~~~~~gd~d~icn~~~~~a~~~~Lk 427 (498)
T COG2939 348 LDYFNFDPEQEVNDPEVDNISGCTTDAMTDFLTFTGGWAKPSRYLVLNLLVNNVWILLYAGDKDFICNLRGNMALDPKLK 427 (498)
T ss_pred cccccccchhccccccccchhccchHHHHhhhhhcCCcccccHHHHhhhhhcCCceeeeecCchhHhhhhhhcccCCcce
Confidence 45778778888887765689999999988884 688888878888899999999999999999999999999999999
Q ss_pred cccccccccCCCeeeee--CCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHHHHHHHHHcCC
Q 031655 79 WSGQKDFVASPEIPFEV--DGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAALEMLRRWMEGS 140 (155)
Q Consensus 79 w~g~~~f~~~~~~~w~~--~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~~~~~~fl~~~ 140 (155)
|.+..+|..+.-.+|.. ..+..|-.++++|++|+.++.||||||.|+|+.+..|++.|+.+.
T Consensus 428 w~~~~g~~d~~~~~~~~~~t~e~~~~~~s~~n~~~~r~y~aGHMvp~d~P~~~~~~~~~~~~~~ 491 (498)
T COG2939 428 WLGASGYFDASTPFFWSRLTLEEMGGYKSYRNLTFLRIYEAGHMVPYDRPESSLEMVNLWINGY 491 (498)
T ss_pred EeeecchhhhcCCCcccccchhhcccccccCCceEEEEecCcceeecCChHHHHHHHHHHHhhc
Confidence 99999999998888854 677888888889999999999999999999999999999999874
No 9
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=98.10 E-value=1.3e-05 Score=62.96 Aligned_cols=60 Identities=15% Similarity=0.126 Sum_probs=52.5
Q ss_pred cCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHH
Q 031655 50 DGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAA 129 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~ 129 (155)
-.++||+..|..|.++|...++.+.+.++ +..++.|++|||+++.++|+..
T Consensus 222 i~~Pvlli~G~~D~~v~~~~~~~~~~~~~-----------------------------~~~~~~i~~agH~~~~e~p~~~ 272 (282)
T TIGR03343 222 IKAKTLVTWGRDDRFVPLDHGLKLLWNMP-----------------------------DAQLHVFSRCGHWAQWEHADAF 272 (282)
T ss_pred CCCCEEEEEccCCCcCCchhHHHHHHhCC-----------------------------CCEEEEeCCCCcCCcccCHHHH
Confidence 35899999999999999877777777664 4578899999999999999999
Q ss_pred HHHHHHHHc
Q 031655 130 LEMLRRWME 138 (155)
Q Consensus 130 ~~~~~~fl~ 138 (155)
.+++.+|+.
T Consensus 273 ~~~i~~fl~ 281 (282)
T TIGR03343 273 NRLVIDFLR 281 (282)
T ss_pred HHHHHHHhh
Confidence 999999985
No 10
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=97.95 E-value=2.9e-05 Score=58.29 Aligned_cols=60 Identities=12% Similarity=-0.002 Sum_probs=50.8
Q ss_pred hcCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHH
Q 031655 49 EDGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKA 128 (155)
Q Consensus 49 ~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~ 128 (155)
+-..+|||.+|..|.++|....+.+.+.+. +-++..+.++||+++.++|+.
T Consensus 186 ~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~gH~~~~e~p~~ 236 (245)
T TIGR01738 186 NISVPFLRLYGYLDGLVPAKVVPYLDKLAP-----------------------------HSELYIFAKAAHAPFLSHAEA 236 (245)
T ss_pred cCCCCEEEEeecCCcccCHHHHHHHHHhCC-----------------------------CCeEEEeCCCCCCccccCHHH
Confidence 346899999999999999888777666553 336788999999999999999
Q ss_pred HHHHHHHHH
Q 031655 129 ALEMLRRWM 137 (155)
Q Consensus 129 ~~~~~~~fl 137 (155)
..+.+.+|+
T Consensus 237 ~~~~i~~fi 245 (245)
T TIGR01738 237 FCALLVAFK 245 (245)
T ss_pred HHHHHHhhC
Confidence 999999885
No 11
>PRK10349 carboxylesterase BioH; Provisional
Probab=97.95 E-value=3.1e-05 Score=60.28 Aligned_cols=61 Identities=10% Similarity=-0.019 Sum_probs=51.7
Q ss_pred hcCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHH
Q 031655 49 EDGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKA 128 (155)
Q Consensus 49 ~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~ 128 (155)
+-.++|||..|+.|.++|....+...+.++ +..++.+.++||+++.++|+.
T Consensus 194 ~i~~P~lii~G~~D~~~~~~~~~~~~~~i~-----------------------------~~~~~~i~~~gH~~~~e~p~~ 244 (256)
T PRK10349 194 NVSMPFLRLYGYLDGLVPRKVVPMLDKLWP-----------------------------HSESYIFAKAAHAPFISHPAE 244 (256)
T ss_pred hcCCCeEEEecCCCccCCHHHHHHHHHhCC-----------------------------CCeEEEeCCCCCCccccCHHH
Confidence 346899999999999999887766666553 457899999999999999999
Q ss_pred HHHHHHHHHc
Q 031655 129 ALEMLRRWME 138 (155)
Q Consensus 129 ~~~~~~~fl~ 138 (155)
..+.+.+|-.
T Consensus 245 f~~~l~~~~~ 254 (256)
T PRK10349 245 FCHLLVALKQ 254 (256)
T ss_pred HHHHHHHHhc
Confidence 9999998864
No 12
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=97.94 E-value=3.1e-05 Score=58.85 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=51.9
Q ss_pred cCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHH
Q 031655 50 DGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAA 129 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~ 129 (155)
-.++||+.+|+.|.+||....+.+.+.+. +..+..+.++||+.+.++|+..
T Consensus 197 i~~P~l~i~g~~D~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~gH~~~~~~~~~~ 247 (257)
T TIGR03611 197 IQHPVLLIANRDDMLVPYTQSLRLAAALP-----------------------------NAQLKLLPYGGHASNVTDPETF 247 (257)
T ss_pred cCccEEEEecCcCcccCHHHHHHHHHhcC-----------------------------CceEEEECCCCCCccccCHHHH
Confidence 36899999999999999988888777654 2357789999999999999999
Q ss_pred HHHHHHHHc
Q 031655 130 LEMLRRWME 138 (155)
Q Consensus 130 ~~~~~~fl~ 138 (155)
.+.+.+|+.
T Consensus 248 ~~~i~~fl~ 256 (257)
T TIGR03611 248 NRALLDFLK 256 (257)
T ss_pred HHHHHHHhc
Confidence 999999985
No 13
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=97.92 E-value=4.6e-05 Score=57.28 Aligned_cols=60 Identities=22% Similarity=0.221 Sum_probs=51.4
Q ss_pred cCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHH
Q 031655 50 DGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAA 129 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~ 129 (155)
-.++||+.+|+.|.++|....+.+.+.++ +.++..++++||+++.++|+..
T Consensus 192 ~~~Pvlii~g~~D~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~gH~~~~~~p~~~ 242 (251)
T TIGR02427 192 IAVPTLCIAGDQDGSTPPELVREIADLVP-----------------------------GARFAEIRGAGHIPCVEQPEAF 242 (251)
T ss_pred cCCCeEEEEeccCCcCChHHHHHHHHhCC-----------------------------CceEEEECCCCCcccccChHHH
Confidence 46899999999999999987777766654 2367889999999999999999
Q ss_pred HHHHHHHHc
Q 031655 130 LEMLRRWME 138 (155)
Q Consensus 130 ~~~~~~fl~ 138 (155)
.+.+..|+.
T Consensus 243 ~~~i~~fl~ 251 (251)
T TIGR02427 243 NAALRDFLR 251 (251)
T ss_pred HHHHHHHhC
Confidence 999999974
No 14
>PRK03204 haloalkane dehalogenase; Provisional
Probab=97.91 E-value=2.3e-05 Score=62.70 Aligned_cols=58 Identities=12% Similarity=0.113 Sum_probs=48.6
Q ss_pred CceEEEEecCCCccCchhhH-HHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGN-SRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAA 129 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~-~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~ 129 (155)
.++|||..|+.|.+++.... +.+.+.++ +.++..|++|||++++++|+..
T Consensus 227 ~~PtliI~G~~D~~~~~~~~~~~~~~~ip-----------------------------~~~~~~i~~aGH~~~~e~Pe~~ 277 (286)
T PRK03204 227 TKPTLLVWGMKDVAFRPKTILPRLRATFP-----------------------------DHVLVELPNAKHFIQEDAPDRI 277 (286)
T ss_pred CCCeEEEecCCCcccCcHHHHHHHHHhcC-----------------------------CCeEEEcCCCcccccccCHHHH
Confidence 69999999999998866543 44445554 4678899999999999999999
Q ss_pred HHHHHHHH
Q 031655 130 LEMLRRWM 137 (155)
Q Consensus 130 ~~~~~~fl 137 (155)
.++|.+|+
T Consensus 278 ~~~i~~~~ 285 (286)
T PRK03204 278 AAAIIERF 285 (286)
T ss_pred HHHHHHhc
Confidence 99999997
No 15
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=97.91 E-value=3.3e-05 Score=59.98 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=51.3
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
.+++||.+|+.|.++|....+.+.+.+. +..++.+.++||+++.++|+...
T Consensus 220 ~~P~lii~g~~D~~vp~~~~~~~~~~~~-----------------------------~~~~~~~~~~gH~~~~e~p~~~~ 270 (278)
T TIGR03056 220 TIPLHLIAGEEDKAVPPDESKRAATRVP-----------------------------TATLHVVPGGGHLVHEEQADGVV 270 (278)
T ss_pred CCCEEEEEeCCCcccCHHHHHHHHHhcc-----------------------------CCeEEEECCCCCcccccCHHHHH
Confidence 5799999999999999988888776664 23578889999999999999999
Q ss_pred HHHHHHHc
Q 031655 131 EMLRRWME 138 (155)
Q Consensus 131 ~~~~~fl~ 138 (155)
+.+.+|+.
T Consensus 271 ~~i~~f~~ 278 (278)
T TIGR03056 271 GLILQAAE 278 (278)
T ss_pred HHHHHHhC
Confidence 99999974
No 16
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=97.85 E-value=4.2e-05 Score=63.41 Aligned_cols=65 Identities=18% Similarity=0.307 Sum_probs=51.6
Q ss_pred CceEEEEecCCCccCchhhH-HHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGN-SRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAA 129 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~-~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~ 129 (155)
.++|||..|+.|.++|..+. ..+++.+.- ...+.++.+|.+|||+++.++|++.
T Consensus 292 ~~PtLii~G~~D~~~p~~~~~~~~~~~l~~-------------------------~ip~~~l~~i~~aGH~~~~E~Pe~~ 346 (360)
T PLN02679 292 SLPILVLWGDQDPFTPLDGPVGKYFSSLPS-------------------------QLPNVTLYVLEGVGHCPHDDRPDLV 346 (360)
T ss_pred CCCEEEEEeCCCCCcCchhhHHHHHHhhhc-------------------------cCCceEEEEcCCCCCCccccCHHHH
Confidence 68999999999999998753 234444420 0125678899999999999999999
Q ss_pred HHHHHHHHcCC
Q 031655 130 LEMLRRWMEGS 140 (155)
Q Consensus 130 ~~~~~~fl~~~ 140 (155)
.+.|.+|+...
T Consensus 347 ~~~I~~FL~~~ 357 (360)
T PLN02679 347 HEKLLPWLAQL 357 (360)
T ss_pred HHHHHHHHHhc
Confidence 99999999754
No 17
>PRK10673 acyl-CoA esterase; Provisional
Probab=97.84 E-value=5.5e-05 Score=58.38 Aligned_cols=60 Identities=17% Similarity=0.223 Sum_probs=51.7
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
..++|+..|+.|..++....+.+.+.++ +.++..+.++||+.+.++|+...
T Consensus 195 ~~P~l~i~G~~D~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~gH~~~~~~p~~~~ 245 (255)
T PRK10673 195 PHPALFIRGGNSPYVTEAYRDDLLAQFP-----------------------------QARAHVIAGAGHWVHAEKPDAVL 245 (255)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHhCC-----------------------------CcEEEEeCCCCCeeeccCHHHHH
Confidence 4799999999999998877777766553 45788899999999999999999
Q ss_pred HHHHHHHcC
Q 031655 131 EMLRRWMEG 139 (155)
Q Consensus 131 ~~~~~fl~~ 139 (155)
+.+.+|+..
T Consensus 246 ~~l~~fl~~ 254 (255)
T PRK10673 246 RAIRRYLND 254 (255)
T ss_pred HHHHHHHhc
Confidence 999999965
No 18
>PRK03592 haloalkane dehalogenase; Provisional
Probab=97.80 E-value=3.3e-05 Score=61.48 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=53.0
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
.++|||.+|+.|.+++......++..+. ++.++..+.+|||+++.++|+...
T Consensus 228 ~~P~lii~G~~D~~~~~~~~~~~~~~~~----------------------------~~~~~~~i~~~gH~~~~e~p~~v~ 279 (295)
T PRK03592 228 DVPKLLINAEPGAILTTGAIRDWCRSWP----------------------------NQLEITVFGAGLHFAQEDSPEEIG 279 (295)
T ss_pred CCCeEEEeccCCcccCcHHHHHHHHHhh----------------------------hhcceeeccCcchhhhhcCHHHHH
Confidence 6899999999999997666667765542 134577889999999999999999
Q ss_pred HHHHHHHcCCCCC
Q 031655 131 EMLRRWMEGSLSE 143 (155)
Q Consensus 131 ~~~~~fl~~~~~~ 143 (155)
+.+..|+......
T Consensus 280 ~~i~~fl~~~~~~ 292 (295)
T PRK03592 280 AAIAAWLRRLRLA 292 (295)
T ss_pred HHHHHHHHHhccc
Confidence 9999999765443
No 19
>PRK00870 haloalkane dehalogenase; Provisional
Probab=97.78 E-value=6.5e-05 Score=60.17 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=52.3
Q ss_pred HhhcCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCc
Q 031655 47 LLEDGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQP 126 (155)
Q Consensus 47 LL~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP 126 (155)
+.+-.+++||..|+.|.+||... +.+.+.+. + ..+..+..+.++||+++.++|
T Consensus 235 l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~--~------------------------~~~~~~~~i~~~gH~~~~e~p 287 (302)
T PRK00870 235 LERWDKPFLTAFSDSDPITGGGD-AILQKRIP--G------------------------AAGQPHPTIKGAGHFLQEDSG 287 (302)
T ss_pred hhcCCCceEEEecCCCCcccCch-HHHHhhcc--c------------------------ccccceeeecCCCccchhhCh
Confidence 33457999999999999999755 55544443 1 012347789999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 031655 127 KAALEMLRRWMEGSL 141 (155)
Q Consensus 127 ~~~~~~~~~fl~~~~ 141 (155)
+...+.+.+|+...+
T Consensus 288 ~~~~~~l~~fl~~~~ 302 (302)
T PRK00870 288 EELAEAVLEFIRATP 302 (302)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999997643
No 20
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=97.78 E-value=5.8e-05 Score=60.06 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=50.4
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
.+++||.+|..|.++|....+...+.++ +.+++.+.+|||+++.++|+...
T Consensus 234 ~~P~lvi~G~~D~~~~~~~~~~~~~~~~-----------------------------~~~~~~i~~~gH~~~~e~p~~~~ 284 (294)
T PLN02824 234 KCPVLIAWGEKDPWEPVELGRAYANFDA-----------------------------VEDFIVLPGVGHCPQDEAPELVN 284 (294)
T ss_pred CCCeEEEEecCCCCCChHHHHHHHhcCC-----------------------------ccceEEeCCCCCChhhhCHHHHH
Confidence 6899999999999999887776333332 24678999999999999999999
Q ss_pred HHHHHHHcC
Q 031655 131 EMLRRWMEG 139 (155)
Q Consensus 131 ~~~~~fl~~ 139 (155)
+.+.+|+.+
T Consensus 285 ~~i~~fl~~ 293 (294)
T PLN02824 285 PLIESFVAR 293 (294)
T ss_pred HHHHHHHhc
Confidence 999999964
No 21
>PRK07581 hypothetical protein; Validated
Probab=97.76 E-value=9.7e-05 Score=60.25 Aligned_cols=60 Identities=13% Similarity=0.070 Sum_probs=52.8
Q ss_pred cCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcC-ccccCcCCCcHH
Q 031655 50 DGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHD-SGHMVPMDQPKA 128 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~-AGHmvP~dqP~~ 128 (155)
-.++||+..|+.|.++|....+.+.+.+. +.+++.|.+ |||+++.++|+.
T Consensus 274 I~~PtLvI~G~~D~~~p~~~~~~l~~~ip-----------------------------~a~l~~i~~~~GH~~~~~~~~~ 324 (339)
T PRK07581 274 ITAKTFVMPISTDLYFPPEDCEAEAALIP-----------------------------NAELRPIESIWGHLAGFGQNPA 324 (339)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHhCC-----------------------------CCeEEEeCCCCCccccccCcHH
Confidence 36899999999999999998888877764 346788998 999999999999
Q ss_pred HHHHHHHHHc
Q 031655 129 ALEMLRRWME 138 (155)
Q Consensus 129 ~~~~~~~fl~ 138 (155)
...++++|+.
T Consensus 325 ~~~~~~~~~~ 334 (339)
T PRK07581 325 DIAFIDAALK 334 (339)
T ss_pred HHHHHHHHHH
Confidence 9999999985
No 22
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=97.73 E-value=0.00013 Score=56.08 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=49.2
Q ss_pred HhhcCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCc
Q 031655 47 LLEDGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQP 126 (155)
Q Consensus 47 LL~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP 126 (155)
+.+-+++||+..|+.|.+ +....+.+.+.++ +.+++.+.++||+.+.++|
T Consensus 227 l~~i~~P~lii~G~~D~~-~~~~~~~~~~~~~-----------------------------~~~~~~~~~~gH~~~~e~p 276 (288)
T TIGR01250 227 LSEIKVPTLLTVGEFDTM-TPEAAREMQELIA-----------------------------GSRLVVFPDGSHMTMIEDP 276 (288)
T ss_pred hhccCCCEEEEecCCCcc-CHHHHHHHHHhcc-----------------------------CCeEEEeCCCCCCcccCCH
Confidence 334568999999999985 4566666665553 2357889999999999999
Q ss_pred HHHHHHHHHHHc
Q 031655 127 KAALEMLRRWME 138 (155)
Q Consensus 127 ~~~~~~~~~fl~ 138 (155)
+...+.+.+|+.
T Consensus 277 ~~~~~~i~~fl~ 288 (288)
T TIGR01250 277 EVYFKLLSDFIR 288 (288)
T ss_pred HHHHHHHHHHhC
Confidence 999999999974
No 23
>PLN02965 Probable pheophorbidase
Probab=97.70 E-value=0.00011 Score=57.50 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=52.4
Q ss_pred cCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHH
Q 031655 50 DGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAA 129 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~ 129 (155)
-.+++|+..|..|.++|....+...+.+. +-+++.+.+|||+...++|+..
T Consensus 192 i~vP~lvi~g~~D~~~~~~~~~~~~~~~~-----------------------------~a~~~~i~~~GH~~~~e~p~~v 242 (255)
T PLN02965 192 EKVPRVYIKTAKDNLFDPVRQDVMVENWP-----------------------------PAQTYVLEDSDHSAFFSVPTTL 242 (255)
T ss_pred CCCCEEEEEcCCCCCCCHHHHHHHHHhCC-----------------------------cceEEEecCCCCchhhcCHHHH
Confidence 46899999999999999988877777664 3467889999999999999999
Q ss_pred HHHHHHHHc
Q 031655 130 LEMLRRWME 138 (155)
Q Consensus 130 ~~~~~~fl~ 138 (155)
..+|.+|+.
T Consensus 243 ~~~l~~~~~ 251 (255)
T PLN02965 243 FQYLLQAVS 251 (255)
T ss_pred HHHHHHHHH
Confidence 999999975
No 24
>PHA02857 monoglyceride lipase; Provisional
Probab=97.68 E-value=0.00011 Score=57.69 Aligned_cols=63 Identities=10% Similarity=0.200 Sum_probs=51.6
Q ss_pred cCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcH--
Q 031655 50 DGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPK-- 127 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~-- 127 (155)
-.++|||..|+.|.+||...++++.+.+.- +.++..+.+|||++..++|+
T Consensus 208 i~~Pvliv~G~~D~i~~~~~~~~l~~~~~~----------------------------~~~~~~~~~~gH~~~~e~~~~~ 259 (276)
T PHA02857 208 IKTPILILQGTNNEISDVSGAYYFMQHANC----------------------------NREIKIYEGAKHHLHKETDEVK 259 (276)
T ss_pred CCCCEEEEecCCCCcCChHHHHHHHHHccC----------------------------CceEEEeCCCcccccCCchhHH
Confidence 368999999999999999999999888741 23688999999999999884
Q ss_pred -HHHHHHHHHHcCC
Q 031655 128 -AALEMLRRWMEGS 140 (155)
Q Consensus 128 -~~~~~~~~fl~~~ 140 (155)
.+++-+.+||.+.
T Consensus 260 ~~~~~~~~~~l~~~ 273 (276)
T PHA02857 260 KSVMKEIETWIFNR 273 (276)
T ss_pred HHHHHHHHHHHHHh
Confidence 4566666788764
No 25
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=97.67 E-value=7.3e-05 Score=61.34 Aligned_cols=61 Identities=15% Similarity=0.064 Sum_probs=52.3
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcC-ccccCcCCCcHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHD-SGHMVPMDQPKAA 129 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~-AGHmvP~dqP~~~ 129 (155)
.+++||..|+.|.++|....+...+.+. .+-.++.|.+ |||+++.++|++.
T Consensus 277 ~~PtLvi~G~~D~~~p~~~~~~~~~~i~----------------------------p~a~l~~i~~~aGH~~~lE~Pe~~ 328 (343)
T PRK08775 277 RVPTVVVAVEGDRLVPLADLVELAEGLG----------------------------PRGSLRVLRSPYGHDAFLKETDRI 328 (343)
T ss_pred CCCeEEEEeCCCEeeCHHHHHHHHHHcC----------------------------CCCeEEEEeCCccHHHHhcCHHHH
Confidence 4799999999999999988888887773 1235788875 9999999999999
Q ss_pred HHHHHHHHcC
Q 031655 130 LEMLRRWMEG 139 (155)
Q Consensus 130 ~~~~~~fl~~ 139 (155)
..++.+|+..
T Consensus 329 ~~~l~~FL~~ 338 (343)
T PRK08775 329 DAILTTALRS 338 (343)
T ss_pred HHHHHHHHHh
Confidence 9999999964
No 26
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=97.64 E-value=0.00014 Score=61.21 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=50.4
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
.++|||..|+.|.+++....+.+.+.. +.++..|.+|||+++.++|++..
T Consensus 325 ~vPvLiI~G~~D~~v~~~~~~~~a~~~------------------------------~a~l~vIp~aGH~~~~E~Pe~v~ 374 (383)
T PLN03084 325 KTPITVCWGLRDRWLNYDGVEDFCKSS------------------------------QHKLIELPMAGHHVQEDCGEELG 374 (383)
T ss_pred CCCEEEEeeCCCCCcCHHHHHHHHHhc------------------------------CCeEEEECCCCCCcchhCHHHHH
Confidence 579999999999999998877776643 13578899999999999999999
Q ss_pred HHHHHHHc
Q 031655 131 EMLRRWME 138 (155)
Q Consensus 131 ~~~~~fl~ 138 (155)
..|.+|+.
T Consensus 375 ~~I~~Fl~ 382 (383)
T PLN03084 375 GIISGILS 382 (383)
T ss_pred HHHHHHhh
Confidence 99999985
No 27
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=97.64 E-value=0.00013 Score=57.63 Aligned_cols=60 Identities=15% Similarity=0.257 Sum_probs=50.7
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
.+++||..|+.|.++|....++..+.+. +.+++.+. +|||.+.++|+...
T Consensus 207 ~~P~lii~G~~D~~v~~~~~~~l~~~~~-----------------------------~~~~~~i~-~gH~~~~e~p~~~~ 256 (276)
T TIGR02240 207 QQPTLVLAGDDDPIIPLINMRLLAWRIP-----------------------------NAELHIID-DGHLFLITRAEAVA 256 (276)
T ss_pred CCCEEEEEeCCCCcCCHHHHHHHHHhCC-----------------------------CCEEEEEc-CCCchhhccHHHHH
Confidence 5899999999999999988887776664 23566675 59999999999999
Q ss_pred HHHHHHHcCC
Q 031655 131 EMLRRWMEGS 140 (155)
Q Consensus 131 ~~~~~fl~~~ 140 (155)
+.+.+|+.+.
T Consensus 257 ~~i~~fl~~~ 266 (276)
T TIGR02240 257 PIIMKFLAEE 266 (276)
T ss_pred HHHHHHHHHh
Confidence 9999999763
No 28
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.60 E-value=0.00017 Score=59.49 Aligned_cols=61 Identities=15% Similarity=0.311 Sum_probs=54.1
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
+.+|||..|+.|.++|....+...++++ |..+..|.+|||.+..+.|++..
T Consensus 264 ~~pvlii~G~~D~~~p~~~~~~~~~~~p-----------------------------n~~~~~I~~~gH~~h~e~Pe~~~ 314 (326)
T KOG1454|consen 264 KCPVLIIWGDKDQIVPLELAEELKKKLP-----------------------------NAELVEIPGAGHLPHLERPEEVA 314 (326)
T ss_pred CCceEEEEcCcCCccCHHHHHHHHhhCC-----------------------------CceEEEeCCCCcccccCCHHHHH
Confidence 3789999999999999997777776663 67899999999999999999999
Q ss_pred HHHHHHHcCC
Q 031655 131 EMLRRWMEGS 140 (155)
Q Consensus 131 ~~~~~fl~~~ 140 (155)
..|..|+...
T Consensus 315 ~~i~~Fi~~~ 324 (326)
T KOG1454|consen 315 ALLRSFIARL 324 (326)
T ss_pred HHHHHHHHHh
Confidence 9999999753
No 29
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=97.57 E-value=0.0002 Score=58.82 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=53.6
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHH--
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKA-- 128 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~-- 128 (155)
.+++||.+|+.|.+||...++.+.+.+.-. +.++..+.++||+...++|++
T Consensus 279 ~~P~Lii~G~~D~vv~~~~~~~l~~~~~~~---------------------------~~~l~~i~~~gH~l~~e~p~~~~ 331 (349)
T PLN02385 279 SLPLLILHGEADKVTDPSVSKFLYEKASSS---------------------------DKKLKLYEDAYHSILEGEPDEMI 331 (349)
T ss_pred CCCEEEEEeCCCCccChHHHHHHHHHcCCC---------------------------CceEEEeCCCeeecccCCChhhH
Confidence 689999999999999999888888877421 246788999999999999987
Q ss_pred --HHHHHHHHHcCCC
Q 031655 129 --ALEMLRRWMEGSL 141 (155)
Q Consensus 129 --~~~~~~~fl~~~~ 141 (155)
.+..+.+|+....
T Consensus 332 ~~v~~~i~~wL~~~~ 346 (349)
T PLN02385 332 FQVLDDIISWLDSHS 346 (349)
T ss_pred HHHHHHHHHHHHHhc
Confidence 7777888997654
No 30
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=97.53 E-value=0.00031 Score=56.98 Aligned_cols=67 Identities=9% Similarity=0.130 Sum_probs=53.8
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHH--
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKA-- 128 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~-- 128 (155)
.+++||.+|+.|.+||+..++.+.+.+... +-++..+.|+||++..++|+.
T Consensus 251 ~~PvLii~G~~D~ivp~~~~~~l~~~i~~~---------------------------~~~l~~~~~a~H~~~~e~pd~~~ 303 (330)
T PLN02298 251 SIPFIVLHGSADVVTDPDVSRALYEEAKSE---------------------------DKTIKIYDGMMHSLLFGEPDENI 303 (330)
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHhccC---------------------------CceEEEcCCcEeeeecCCCHHHH
Confidence 589999999999999999999988887532 236788999999999999964
Q ss_pred --HHHHHHHHHcCCCCCC
Q 031655 129 --ALEMLRRWMEGSLSEV 144 (155)
Q Consensus 129 --~~~~~~~fl~~~~~~~ 144 (155)
..+.+.+||....-+.
T Consensus 304 ~~~~~~i~~fl~~~~~~~ 321 (330)
T PLN02298 304 EIVRRDILSWLNERCTGK 321 (330)
T ss_pred HHHHHHHHHHHHHhccCC
Confidence 5566777887654333
No 31
>PLN02578 hydrolase
Probab=97.48 E-value=0.00044 Score=57.04 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=49.7
Q ss_pred cCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHH
Q 031655 50 DGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAA 129 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~ 129 (155)
-.+++|+.+|+.|.+|+....+.+.+.++ +..++.+ ++||+.+.++|++.
T Consensus 295 i~~PvLiI~G~~D~~v~~~~~~~l~~~~p-----------------------------~a~l~~i-~~GH~~~~e~p~~~ 344 (354)
T PLN02578 295 LSCPLLLLWGDLDPWVGPAKAEKIKAFYP-----------------------------DTTLVNL-QAGHCPHDEVPEQV 344 (354)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHhCC-----------------------------CCEEEEe-CCCCCccccCHHHH
Confidence 36899999999999999887777666553 2356667 79999999999999
Q ss_pred HHHHHHHHcC
Q 031655 130 LEMLRRWMEG 139 (155)
Q Consensus 130 ~~~~~~fl~~ 139 (155)
.+.|.+|+.+
T Consensus 345 ~~~I~~fl~~ 354 (354)
T PLN02578 345 NKALLEWLSS 354 (354)
T ss_pred HHHHHHHHhC
Confidence 9999999863
No 32
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=97.39 E-value=0.00059 Score=59.18 Aligned_cols=60 Identities=10% Similarity=0.061 Sum_probs=52.9
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcC-CCcHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPM-DQPKAA 129 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~-dqP~~~ 129 (155)
.+++||..|+.|.++|....+...+.++ +..+..+.+|||+.+. ++|+.-
T Consensus 418 ~vPtLII~Ge~D~ivP~~~~~~la~~iP-----------------------------~a~l~vI~~aGH~~~v~e~p~~f 468 (481)
T PLN03087 418 KCDVAIFHGGDDELIPVECSYAVKAKVP-----------------------------RARVKVIDDKDHITIVVGRQKEF 468 (481)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHhCC-----------------------------CCEEEEeCCCCCcchhhcCHHHH
Confidence 6899999999999999999988888775 2367899999999996 999999
Q ss_pred HHHHHHHHcC
Q 031655 130 LEMLRRWMEG 139 (155)
Q Consensus 130 ~~~~~~fl~~ 139 (155)
.+.+.+|...
T Consensus 469 a~~L~~F~~~ 478 (481)
T PLN03087 469 ARELEEIWRR 478 (481)
T ss_pred HHHHHHHhhc
Confidence 9999999854
No 33
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=97.34 E-value=0.00042 Score=57.84 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=54.0
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEc-CccccCcCCCcHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVH-DSGHMVPMDQPKAA 129 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~-~AGHmvP~dqP~~~ 129 (155)
.+++||..|+.|.+||....+...+.+.=.+ ...+++.|. ++||+.+.++|++.
T Consensus 309 ~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~-------------------------~~~~l~~i~~~~GH~~~le~p~~~ 363 (379)
T PRK00175 309 KARFLVVSFTSDWLFPPARSREIVDALLAAG-------------------------ADVSYAEIDSPYGHDAFLLDDPRY 363 (379)
T ss_pred CCCEEEEEECCccccCHHHHHHHHHHHHhcC-------------------------CCeEEEEeCCCCCchhHhcCHHHH
Confidence 5799999999999999999888887775110 123677785 99999999999999
Q ss_pred HHHHHHHHcCC
Q 031655 130 LEMLRRWMEGS 140 (155)
Q Consensus 130 ~~~~~~fl~~~ 140 (155)
.+.|.+|+...
T Consensus 364 ~~~L~~FL~~~ 374 (379)
T PRK00175 364 GRLVRAFLERA 374 (379)
T ss_pred HHHHHHHHHhh
Confidence 99999999764
No 34
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=97.33 E-value=0.00046 Score=56.75 Aligned_cols=62 Identities=11% Similarity=0.164 Sum_probs=48.7
Q ss_pred cCceEEEEecCCCccCchhhHHHHHhcc-ccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHH
Q 031655 50 DGVKLLVYAGEYDLICNWLGNSRWVHAM-EWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKA 128 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~~~i~~l-~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~ 128 (155)
-.++|+++.|+.|.++++.......+.+ .+. ..-+.+.++||++++++|++
T Consensus 257 i~iPv~fi~G~~D~v~~~p~~~~~~rk~vp~l----------------------------~~~vv~~~~gH~vqqe~p~~ 308 (322)
T KOG4178|consen 257 ITIPVLFIWGDLDPVLPYPIFGELYRKDVPRL----------------------------TERVVIEGIGHFVQQEKPQE 308 (322)
T ss_pred cccceEEEEecCcccccchhHHHHHHHhhccc----------------------------cceEEecCCcccccccCHHH
Confidence 3589999999999999998444443332 221 14578999999999999999
Q ss_pred HHHHHHHHHcC
Q 031655 129 ALEMLRRWMEG 139 (155)
Q Consensus 129 ~~~~~~~fl~~ 139 (155)
..+++..|++.
T Consensus 309 v~~~i~~f~~~ 319 (322)
T KOG4178|consen 309 VNQAILGFINS 319 (322)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 35
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=97.29 E-value=0.00044 Score=56.92 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=50.9
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEE-cCccccCcCCCcHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKV-HDSGHMVPMDQPKAA 129 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V-~~AGHmvP~dqP~~~ 129 (155)
.+++|+..|+.|.++|....+...+.+.=. . -..+|+.+ .+|||+++.++|+..
T Consensus 288 ~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~--------~-----------------~~v~~~~i~~~~GH~~~le~p~~~ 342 (351)
T TIGR01392 288 KAPFLVVSITSDWLFPPAESRELAKALPAA--------G-----------------LRVTYVEIESPYGHDAFLVETDQV 342 (351)
T ss_pred CCCEEEEEeCCccccCHHHHHHHHHHHhhc--------C-----------------CceEEEEeCCCCCcchhhcCHHHH
Confidence 589999999999999999999888877510 0 01245556 489999999999999
Q ss_pred HHHHHHHHc
Q 031655 130 LEMLRRWME 138 (155)
Q Consensus 130 ~~~~~~fl~ 138 (155)
.+.|.+|++
T Consensus 343 ~~~l~~FL~ 351 (351)
T TIGR01392 343 EELIRGFLR 351 (351)
T ss_pred HHHHHHHhC
Confidence 999999974
No 36
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=97.23 E-value=0.00074 Score=49.62 Aligned_cols=52 Identities=21% Similarity=0.283 Sum_probs=42.8
Q ss_pred cCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHH
Q 031655 50 DGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAA 129 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~ 129 (155)
-+++|++..|+.|.+++....+.+.+.+. +.+++.+.++||+++.++|++.
T Consensus 175 ~~~pvl~i~g~~D~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~gH~~~~~~p~~~ 225 (228)
T PF12697_consen 175 IKVPVLVIHGEDDPIVPPESAEELADKLP-----------------------------NAELVVIPGAGHFLFLEQPDEV 225 (228)
T ss_dssp SSSEEEEEEETTSSSSHHHHHHHHHHHST-----------------------------TEEEEEETTSSSTHHHHSHHHH
T ss_pred cCCCeEEeecCCCCCCCHHHHHHHHHHCC-----------------------------CCEEEEECCCCCccHHHCHHHH
Confidence 47999999999999999666666665553 4578999999999999999975
Q ss_pred H
Q 031655 130 L 130 (155)
Q Consensus 130 ~ 130 (155)
.
T Consensus 226 ~ 226 (228)
T PF12697_consen 226 A 226 (228)
T ss_dssp H
T ss_pred h
Confidence 4
No 37
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=97.17 E-value=0.0023 Score=44.06 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=52.8
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
..+||+.+|..|.++|+.+.+...+.|. +-.++++.+.||-+-...-.-+.
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~-----------------------------~s~lvt~~g~gHg~~~~~s~C~~ 84 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLP-----------------------------GSRLVTVDGAGHGVYAGGSPCVD 84 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCC-----------------------------CceEEEEeccCcceecCCChHHH
Confidence 3899999999999999999999999996 22689999999999853334457
Q ss_pred HHHHHHHcCCCCCC
Q 031655 131 EMLRRWMEGSLSEV 144 (155)
Q Consensus 131 ~~~~~fl~~~~~~~ 144 (155)
+++.+|+..-.+|.
T Consensus 85 ~~v~~yl~~G~lP~ 98 (103)
T PF08386_consen 85 KAVDDYLLDGTLPA 98 (103)
T ss_pred HHHHHHHHcCCCCC
Confidence 78888887666554
No 38
>PRK06489 hypothetical protein; Provisional
Probab=97.15 E-value=0.0016 Score=53.82 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=48.3
Q ss_pred CceEEEEecCCCccCchhhH--HHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCc----cccCcCC
Q 031655 51 GVKLLVYAGEYDLICNWLGN--SRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDS----GHMVPMD 124 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~--~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~A----GHmvP~d 124 (155)
.++|||.+|+.|.++|.... +...+.+. +..+++|.+| ||++. +
T Consensus 292 ~~PvLvI~G~~D~~~p~~~~~~~~la~~ip-----------------------------~a~l~~i~~a~~~~GH~~~-e 341 (360)
T PRK06489 292 KAPVLAINSADDERNPPETGVMEAALKRVK-----------------------------HGRLVLIPASPETRGHGTT-G 341 (360)
T ss_pred CCCEEEEecCCCcccChhhHHHHHHHHhCc-----------------------------CCeEEEECCCCCCCCcccc-c
Confidence 68999999999999988765 45555553 3468999996 99986 8
Q ss_pred CcHHHHHHHHHHHcC
Q 031655 125 QPKAALEMLRRWMEG 139 (155)
Q Consensus 125 qP~~~~~~~~~fl~~ 139 (155)
+|+...+.|.+|+..
T Consensus 342 ~P~~~~~~i~~FL~~ 356 (360)
T PRK06489 342 SAKFWKAYLAEFLAQ 356 (360)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999964
No 39
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=97.12 E-value=0.0019 Score=54.49 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=54.4
Q ss_pred cCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcC-ccccCcCCCcHH
Q 031655 50 DGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHD-SGHMVPMDQPKA 128 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~-AGHmvP~dqP~~ 128 (155)
-..++||..|+.|.++|....+...+.++=.+ .+.++..|.+ +||+.+.++|+.
T Consensus 322 I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~-------------------------~~a~l~~I~s~~GH~~~le~p~~ 376 (389)
T PRK06765 322 IEANVLMIPCKQDLLQPPRYNYKMVDILQKQG-------------------------KYAEVYEIESINGHMAGVFDIHL 376 (389)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcC-------------------------CCeEEEEECCCCCcchhhcCHHH
Confidence 36899999999999999988888777774111 1467889985 999999999999
Q ss_pred HHHHHHHHHcC
Q 031655 129 ALEMLRRWMEG 139 (155)
Q Consensus 129 ~~~~~~~fl~~ 139 (155)
....|.+|+..
T Consensus 377 ~~~~I~~FL~~ 387 (389)
T PRK06765 377 FEKKIYEFLNR 387 (389)
T ss_pred HHHHHHHHHcc
Confidence 99999999975
No 40
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=97.12 E-value=0.0017 Score=48.43 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=44.5
Q ss_pred cCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHH
Q 031655 50 DGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAA 129 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~ 129 (155)
-..++|+.+|..|..++- -.+.+.+.+ ++.+++++.++||+++.++|+..
T Consensus 193 ~~~P~l~i~g~~D~~~~~-~~~~~~~~~-----------------------------~~~~~~~~~~~gH~~~~e~~~~~ 242 (251)
T TIGR03695 193 LTIPVLYLCGEKDEKFVQ-IAKEMQKLL-----------------------------PNLTLVIIANAGHNIHLENPEAF 242 (251)
T ss_pred CCCceEEEeeCcchHHHH-HHHHHHhcC-----------------------------CCCcEEEEcCCCCCcCccChHHH
Confidence 468999999999976532 122222222 24578889999999999999999
Q ss_pred HHHHHHHHc
Q 031655 130 LEMLRRWME 138 (155)
Q Consensus 130 ~~~~~~fl~ 138 (155)
...+.+|+.
T Consensus 243 ~~~i~~~l~ 251 (251)
T TIGR03695 243 AKILLAFLE 251 (251)
T ss_pred HHHHHHHhC
Confidence 999999973
No 41
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=97.02 E-value=0.0017 Score=54.90 Aligned_cols=60 Identities=20% Similarity=0.207 Sum_probs=45.2
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
.++||+..|+.|.+++. ....+.+.++ .+..++.|.+|||+++.|+|+.-.
T Consensus 325 ~vP~liI~G~~D~i~~~-~~~~~~~~~~----------------------------~~~~~~~i~~aGH~~~~E~P~~f~ 375 (402)
T PLN02894 325 KVPTTFIYGRHDWMNYE-GAVEARKRMK----------------------------VPCEIIRVPQGGHFVFLDNPSGFH 375 (402)
T ss_pred CCCEEEEEeCCCCCCcH-HHHHHHHHcC----------------------------CCCcEEEeCCCCCeeeccCHHHHH
Confidence 68999999999988764 3444444442 023578999999999999999988
Q ss_pred HHHHHHHcC
Q 031655 131 EMLRRWMEG 139 (155)
Q Consensus 131 ~~~~~fl~~ 139 (155)
+++.+|+.+
T Consensus 376 ~~l~~~~~~ 384 (402)
T PLN02894 376 SAVLYACRK 384 (402)
T ss_pred HHHHHHHHH
Confidence 777777654
No 42
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=97.00 E-value=0.0016 Score=53.17 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=47.1
Q ss_pred cCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHH
Q 031655 50 DGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAA 129 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~ 129 (155)
-.+++|+..|+.|.+||....+ .+. +++++..+.++||+...++|+..
T Consensus 313 i~~Pvlii~g~~D~~vp~~~~~----~l~----------------------------~~~~~~~~~~~gH~~~~e~p~~~ 360 (371)
T PRK14875 313 LAIPVLVIWGEQDRIIPAAHAQ----GLP----------------------------DGVAVHVLPGAGHMPQMEAAADV 360 (371)
T ss_pred CCCCEEEEEECCCCccCHHHHh----hcc----------------------------CCCeEEEeCCCCCChhhhCHHHH
Confidence 4689999999999999875432 111 23567899999999999999999
Q ss_pred HHHHHHHHcC
Q 031655 130 LEMLRRWMEG 139 (155)
Q Consensus 130 ~~~~~~fl~~ 139 (155)
.+.|.+|+.+
T Consensus 361 ~~~i~~fl~~ 370 (371)
T PRK14875 361 NRLLAEFLGK 370 (371)
T ss_pred HHHHHHHhcc
Confidence 9999999865
No 43
>PRK10749 lysophospholipase L2; Provisional
Probab=96.99 E-value=0.0017 Score=52.98 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=51.6
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCc---H
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQP---K 127 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP---~ 127 (155)
.+++||.+|+.|.++++.+++.+.+.++-.+. ...+.+++.+.||||++..+.| +
T Consensus 259 ~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~----------------------~~~~~~l~~~~gagH~~~~E~~~~r~ 316 (330)
T PRK10749 259 TTPLLLLQAEEERVVDNRMHDRFCEARTAAGH----------------------PCEGGKPLVIKGAYHEILFEKDAMRS 316 (330)
T ss_pred CCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCC----------------------CCCCceEEEeCCCcchhhhCCcHHHH
Confidence 58999999999999999999998887752111 0113468999999999999887 4
Q ss_pred HHHHHHHHHHcCC
Q 031655 128 AALEMLRRWMEGS 140 (155)
Q Consensus 128 ~~~~~~~~fl~~~ 140 (155)
..++-+..|+...
T Consensus 317 ~v~~~i~~fl~~~ 329 (330)
T PRK10749 317 VALNAIVDFFNRH 329 (330)
T ss_pred HHHHHHHHHHhhc
Confidence 4556666787543
No 44
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=96.94 E-value=0.0024 Score=48.81 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=42.6
Q ss_pred cCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHH
Q 031655 50 DGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAA 129 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~ 129 (155)
-.++|||..|+.|.++.. ...+. +..+..|.+|||+++.++|+..
T Consensus 187 i~~P~lii~G~~D~~~~~-----~~~~~------------------------------~~~~~~i~~~gH~~~~e~p~~~ 231 (242)
T PRK11126 187 LTFPFYYLCGERDSKFQA-----LAQQL------------------------------ALPLHVIPNAGHNAHRENPAAF 231 (242)
T ss_pred cCCCeEEEEeCCcchHHH-----HHHHh------------------------------cCeEEEeCCCCCchhhhChHHH
Confidence 368999999999975421 11110 2468899999999999999999
Q ss_pred HHHHHHHHc
Q 031655 130 LEMLRRWME 138 (155)
Q Consensus 130 ~~~~~~fl~ 138 (155)
.+.+..|+.
T Consensus 232 ~~~i~~fl~ 240 (242)
T PRK11126 232 AASLAQILR 240 (242)
T ss_pred HHHHHHHHh
Confidence 999999985
No 45
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=96.88 E-value=0.0029 Score=53.54 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=53.1
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCC-CcHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMD-QPKAA 129 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~d-qP~~~ 129 (155)
++++||.+|+.|.+||...++.+.+++.=. .-++..+.|++|++..+ .|+..
T Consensus 324 ~vPvLIi~G~~D~vvp~~~a~~l~~~~~~~---------------------------~k~l~~~~ga~H~l~~e~~~e~v 376 (395)
T PLN02652 324 TVPFMVLHGTADRVTDPLASQDLYNEAASR---------------------------HKDIKLYDGFLHDLLFEPEREEV 376 (395)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHhcCCC---------------------------CceEEEECCCeEEeccCCCHHHH
Confidence 699999999999999999999998887411 11456789999999776 79999
Q ss_pred HHHHHHHHcCCC
Q 031655 130 LEMLRRWMEGSL 141 (155)
Q Consensus 130 ~~~~~~fl~~~~ 141 (155)
++.+..||.+..
T Consensus 377 ~~~I~~FL~~~~ 388 (395)
T PLN02652 377 GRDIIDWMEKRL 388 (395)
T ss_pred HHHHHHHHHHHh
Confidence 999999998654
No 46
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=96.75 E-value=0.0056 Score=50.30 Aligned_cols=62 Identities=15% Similarity=0.427 Sum_probs=50.8
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCC-cHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQ-PKAA 129 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dq-P~~~ 129 (155)
.+++|+.+|+.|.+++..++..+.+++.-. +-++..+.+++|++..+. ++..
T Consensus 270 ~~P~Lii~G~~D~vv~~~~~~~~~~~~~~~---------------------------~~~l~~~~g~~H~i~~E~~~~~v 322 (332)
T TIGR01607 270 DIPILFIHSKGDCVCSYEGTVSFYNKLSIS---------------------------NKELHTLEDMDHVITIEPGNEEV 322 (332)
T ss_pred CCCEEEEEeCCCCccCHHHHHHHHHhccCC---------------------------CcEEEEECCCCCCCccCCCHHHH
Confidence 589999999999999999999888776421 235678899999999875 5778
Q ss_pred HHHHHHHHcC
Q 031655 130 LEMLRRWMEG 139 (155)
Q Consensus 130 ~~~~~~fl~~ 139 (155)
++-+..||.+
T Consensus 323 ~~~i~~wL~~ 332 (332)
T TIGR01607 323 LKKIIEWISN 332 (332)
T ss_pred HHHHHHHhhC
Confidence 8888889864
No 47
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=96.75 E-value=0.0039 Score=46.58 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=49.4
Q ss_pred hcCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHH
Q 031655 49 EDGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKA 128 (155)
Q Consensus 49 ~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~ 128 (155)
+-.+++|+.+|+.|.++|........+.++ +..++.+.++||....+.|+.
T Consensus 173 ~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~-----------------------------~~~~~~~~~~GH~~~~~~~~~ 223 (230)
T PF00561_consen 173 NIKVPTLIIWGEDDPLVPPESSEQLAKLIP-----------------------------NSQLVLIEGSGHFAFLEGPDE 223 (230)
T ss_dssp TTTSEEEEEEETTCSSSHHHHHHHHHHHST-----------------------------TEEEEEETTCCSTHHHHSHHH
T ss_pred ccCCCeEEEEeCCCCCCCHHHHHHHHHhcC-----------------------------CCEEEECCCCChHHHhcCHHh
Confidence 357999999999999999999988666664 457899999999999999999
Q ss_pred HHHHHH
Q 031655 129 ALEMLR 134 (155)
Q Consensus 129 ~~~~~~ 134 (155)
..++|.
T Consensus 224 ~~~~i~ 229 (230)
T PF00561_consen 224 FNEIII 229 (230)
T ss_dssp HHHHHH
T ss_pred hhhhhc
Confidence 888775
No 48
>PRK11460 putative hydrolase; Provisional
Probab=96.55 E-value=0.0026 Score=49.67 Aligned_cols=74 Identities=18% Similarity=0.136 Sum_probs=55.7
Q ss_pred cCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHH
Q 031655 50 DGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAA 129 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~ 129 (155)
...+|++.+|+.|.++|+..++...+.|+=.| .+.++..++++||.++.+.-+.+
T Consensus 147 ~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g-------------------------~~~~~~~~~~~gH~i~~~~~~~~ 201 (232)
T PRK11460 147 TATTIHLIHGGEDPVIDVAHAVAAQEALISLG-------------------------GDVTLDIVEDLGHAIDPRLMQFA 201 (232)
T ss_pred CCCcEEEEecCCCCccCHHHHHHHHHHHHHCC-------------------------CCeEEEEECCCCCCCCHHHHHHH
Confidence 46899999999999999999999988886221 24678889999999987666777
Q ss_pred HHHHHHHHcCCCCCCCCCC
Q 031655 130 LEMLRRWMEGSLSEVPAGS 148 (155)
Q Consensus 130 ~~~~~~fl~~~~~~~~~~~ 148 (155)
.+.|..++.-..+.+.++.
T Consensus 202 ~~~l~~~l~~~~~~~~~~~ 220 (232)
T PRK11460 202 LDRLRYTVPKRYWDEALSG 220 (232)
T ss_pred HHHHHHHcchhhHHHHhcc
Confidence 7777666644444444443
No 49
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=96.47 E-value=0.011 Score=44.78 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=47.2
Q ss_pred cCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCc-HH
Q 031655 50 DGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQP-KA 128 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP-~~ 128 (155)
...+|||.+|+.|.+||+..+..+.+.|.-.|. ...+++++++||-....+. ..
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~-------------------------~~~~~~~p~~gH~~~~~~~~~~ 197 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALRKAGK-------------------------PVELLIFPGEGHGFGNPENRRD 197 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTS-------------------------SEEEEEETT-SSSTTSHHHHHH
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHHhcCC-------------------------CEEEEEcCcCCCCCCCchhHHH
Confidence 468999999999999999999999999974442 4689999999996553222 23
Q ss_pred HHHHHHHHHc
Q 031655 129 ALEMLRRWME 138 (155)
Q Consensus 129 ~~~~~~~fl~ 138 (155)
....+.+|+.
T Consensus 198 ~~~~~~~f~~ 207 (213)
T PF00326_consen 198 WYERILDFFD 207 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444555553
No 50
>PRK05855 short chain dehydrogenase; Validated
Probab=96.25 E-value=0.0068 Score=52.29 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=46.1
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
.+++||.+|+.|.++|....+.+.+.++ +..+..+ ++||+.+.+.|+...
T Consensus 233 ~~P~lii~G~~D~~v~~~~~~~~~~~~~-----------------------------~~~~~~~-~~gH~~~~e~p~~~~ 282 (582)
T PRK05855 233 DVPVQLIVPTGDPYVRPALYDDLSRWVP-----------------------------RLWRREI-KAGHWLPMSHPQVLA 282 (582)
T ss_pred cCceEEEEeCCCcccCHHHhccccccCC-----------------------------cceEEEc-cCCCcchhhChhHHH
Confidence 5799999999999999766655443332 2344555 579999999999999
Q ss_pred HHHHHHHcC
Q 031655 131 EMLRRWMEG 139 (155)
Q Consensus 131 ~~~~~fl~~ 139 (155)
+.+.+|+..
T Consensus 283 ~~i~~fl~~ 291 (582)
T PRK05855 283 AAVAEFVDA 291 (582)
T ss_pred HHHHHHHHh
Confidence 999999975
No 51
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=96.16 E-value=0.013 Score=57.74 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=51.6
Q ss_pred cCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHH
Q 031655 50 DGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAA 129 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~ 129 (155)
-..++||..|+.|.+++ ...+++.+.+.=.. .... + ...++..++.|.+|||+++.++|+..
T Consensus 1567 I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~----~~~~------~-------~~~~~a~lvvI~~aGH~~~lE~Pe~f 1628 (1655)
T PLN02980 1567 CDTPLLLVVGEKDVKFK-QIAQKMYREIGKSK----ESGN------D-------KGKEIIEIVEIPNCGHAVHLENPLPV 1628 (1655)
T ss_pred CCCCEEEEEECCCCccH-HHHHHHHHHccccc----cccc------c-------ccccceEEEEECCCCCchHHHCHHHH
Confidence 36899999999999876 34445555553100 0000 0 00123578999999999999999999
Q ss_pred HHHHHHHHcCCC
Q 031655 130 LEMLRRWMEGSL 141 (155)
Q Consensus 130 ~~~~~~fl~~~~ 141 (155)
.+.+.+|+.+..
T Consensus 1629 ~~~I~~FL~~~~ 1640 (1655)
T PLN02980 1629 IRALRKFLTRLH 1640 (1655)
T ss_pred HHHHHHHHHhcc
Confidence 999999998744
No 52
>PRK10566 esterase; Provisional
Probab=96.01 E-value=0.012 Score=45.45 Aligned_cols=62 Identities=21% Similarity=0.213 Sum_probs=47.4
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
..++|+.+|..|.++|+..++.+.+.++-.|.. .++++.++.|+||... |+ .+
T Consensus 186 ~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~-----------------------~~~~~~~~~~~~H~~~---~~-~~ 238 (249)
T PRK10566 186 DRPLLLWHGLADDVVPAAESLRLQQALRERGLD-----------------------KNLTCLWEPGVRHRIT---PE-AL 238 (249)
T ss_pred CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCC-----------------------cceEEEecCCCCCccC---HH-HH
Confidence 469999999999999999999998888633211 2478899999999974 43 45
Q ss_pred HHHHHHHcC
Q 031655 131 EMLRRWMEG 139 (155)
Q Consensus 131 ~~~~~fl~~ 139 (155)
+-+.+||..
T Consensus 239 ~~~~~fl~~ 247 (249)
T PRK10566 239 DAGVAFFRQ 247 (249)
T ss_pred HHHHHHHHh
Confidence 566667764
No 53
>PLN02511 hydrolase
Probab=95.99 E-value=0.011 Score=49.61 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=44.9
Q ss_pred cCceEEEEecCCCccCchhhHH-HHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHH
Q 031655 50 DGVKLLVYAGEYDLICNWLGNS-RWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKA 128 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~-~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~ 128 (155)
-.+++||.+|+.|.++|..... ..++.+ .+..++.+.++||+...++|+.
T Consensus 297 I~vPtLiI~g~dDpi~p~~~~~~~~~~~~-----------------------------p~~~l~~~~~gGH~~~~E~p~~ 347 (388)
T PLN02511 297 VRVPLLCIQAANDPIAPARGIPREDIKAN-----------------------------PNCLLIVTPSGGHLGWVAGPEA 347 (388)
T ss_pred CCCCeEEEEcCCCCcCCcccCcHhHHhcC-----------------------------CCEEEEECCCcceeccccCCCC
Confidence 4689999999999999975432 222222 2578899999999999999864
Q ss_pred ------HHHHHHHHHcC
Q 031655 129 ------ALEMLRRWMEG 139 (155)
Q Consensus 129 ------~~~~~~~fl~~ 139 (155)
+.+.+.+|+..
T Consensus 348 ~~~~~w~~~~i~~Fl~~ 364 (388)
T PLN02511 348 PFGAPWTDPVVMEFLEA 364 (388)
T ss_pred CCCCccHHHHHHHHHHH
Confidence 35666667643
No 54
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=95.79 E-value=0.032 Score=44.40 Aligned_cols=59 Identities=10% Similarity=0.011 Sum_probs=49.2
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
.+++++..|..|.++|..-.+.+++.+. + -+++.+. +||+.+..+|+...
T Consensus 211 ~vP~l~I~g~~D~~ip~~~~~~m~~~~~--~---------------------------~~~~~l~-~gH~p~ls~P~~~~ 260 (273)
T PLN02211 211 KVPRVYIKTLHDHVVKPEQQEAMIKRWP--P---------------------------SQVYELE-SDHSPFFSTPFLLF 260 (273)
T ss_pred ccceEEEEeCCCCCCCHHHHHHHHHhCC--c---------------------------cEEEEEC-CCCCccccCHHHHH
Confidence 5799999999999999998888887775 1 1456774 99999999999999
Q ss_pred HHHHHHHcC
Q 031655 131 EMLRRWMEG 139 (155)
Q Consensus 131 ~~~~~fl~~ 139 (155)
.+|.+....
T Consensus 261 ~~i~~~a~~ 269 (273)
T PLN02211 261 GLLIKAAAS 269 (273)
T ss_pred HHHHHHHHH
Confidence 999887643
No 55
>PLN02872 triacylglycerol lipase
Probab=95.43 E-value=0.045 Score=46.40 Aligned_cols=61 Identities=10% Similarity=0.165 Sum_probs=50.4
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCcccc---CcCCCcH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHM---VPMDQPK 127 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHm---vP~dqP~ 127 (155)
.++|+||.|+.|.+++....+++.+.+.= ...+..+.++||+ ...+.|+
T Consensus 325 ~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~----------------------------~~~l~~l~~~gH~dfi~~~eape 376 (395)
T PLN02872 325 SLPLWMGYGGTDGLADVTDVEHTLAELPS----------------------------KPELLYLENYGHIDFLLSTSAKE 376 (395)
T ss_pred CccEEEEEcCCCCCCCHHHHHHHHHHCCC----------------------------ccEEEEcCCCCCHHHHhCcchHH
Confidence 58999999999999999999999998851 0135667999996 4568999
Q ss_pred HHHHHHHHHHcC
Q 031655 128 AALEMLRRWMEG 139 (155)
Q Consensus 128 ~~~~~~~~fl~~ 139 (155)
..++-+.+|+..
T Consensus 377 ~V~~~Il~fL~~ 388 (395)
T PLN02872 377 DVYNHMIQFFRS 388 (395)
T ss_pred HHHHHHHHHHHH
Confidence 999888889874
No 56
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=95.42 E-value=0.068 Score=39.12 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=46.1
Q ss_pred hhcCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcH
Q 031655 48 LEDGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPK 127 (155)
Q Consensus 48 L~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~ 127 (155)
.....++++..|+.|.+.+......+.+.+.. ...++++.++||+...++|+
T Consensus 218 ~~~~~P~l~i~g~~d~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~gH~~~~~~p~ 269 (282)
T COG0596 218 ARITVPTLIIHGEDDPVVPAELARRLAAALPN----------------------------DARLVVIPGAGHFPHLEAPE 269 (282)
T ss_pred ccCCCCeEEEecCCCCcCCHHHHHHHHhhCCC----------------------------CceEEEeCCCCCcchhhcHH
Confidence 34469999999999966666554555555542 24688999999999999999
Q ss_pred HHHHHHHHHH
Q 031655 128 AALEMLRRWM 137 (155)
Q Consensus 128 ~~~~~~~~fl 137 (155)
...+.+.+|+
T Consensus 270 ~~~~~i~~~~ 279 (282)
T COG0596 270 AFAAALLAFL 279 (282)
T ss_pred HHHHHHHHHH
Confidence 7776666644
No 57
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=95.29 E-value=0.034 Score=42.60 Aligned_cols=59 Identities=19% Similarity=0.332 Sum_probs=41.8
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
+.+|++.+|+.|.++|....+...+.|.=.+ .+++|.++.|.||-++. ..+
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~-------------------------~~v~~~~~~g~gH~i~~----~~~ 205 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAAG-------------------------ANVEFHEYPGGGHEISP----EEL 205 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT--------------------------GEEEEEETT-SSS--H----HHH
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhcC-------------------------CCEEEEEcCCCCCCCCH----HHH
Confidence 5799999999999999999888888775222 15789999999999973 455
Q ss_pred HHHHHHHc
Q 031655 131 EMLRRWME 138 (155)
Q Consensus 131 ~~~~~fl~ 138 (155)
..+.+||.
T Consensus 206 ~~~~~~l~ 213 (216)
T PF02230_consen 206 RDLREFLE 213 (216)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55666764
No 58
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=95.27 E-value=0.057 Score=45.11 Aligned_cols=63 Identities=17% Similarity=0.195 Sum_probs=46.9
Q ss_pred hhcCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcH
Q 031655 48 LEDGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPK 127 (155)
Q Consensus 48 L~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~ 127 (155)
++..++|++..|+.|.+--..|.+.. ..+.- .....+.|++|||.|-.|+|+
T Consensus 300 l~~~~pv~fiyG~~dWmD~~~g~~~~-~~~~~---------------------------~~~~~~~v~~aGHhvylDnp~ 351 (365)
T KOG4409|consen 300 LKKDVPVTFIYGDRDWMDKNAGLEVT-KSLMK---------------------------EYVEIIIVPGAGHHVYLDNPE 351 (365)
T ss_pred hccCCCEEEEecCcccccchhHHHHH-HHhhc---------------------------ccceEEEecCCCceeecCCHH
Confidence 45679999999999987665554443 33311 124689999999999999999
Q ss_pred HHHHHHHHHHc
Q 031655 128 AALEMLRRWME 138 (155)
Q Consensus 128 ~~~~~~~~fl~ 138 (155)
.=.+++..++.
T Consensus 352 ~Fn~~v~~~~~ 362 (365)
T KOG4409|consen 352 FFNQIVLEECD 362 (365)
T ss_pred HHHHHHHHHHh
Confidence 87777776664
No 59
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=95.22 E-value=0.076 Score=42.67 Aligned_cols=51 Identities=18% Similarity=0.323 Sum_probs=39.7
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
.+++||.+|+.|.+||...++.+.+.++ +..++++.++||+.. .|+...
T Consensus 248 ~~P~lii~g~~D~~~p~~~~~~~~~~~~-----------------------------~~~~~~~~~~gH~~~--~~~~~~ 296 (306)
T TIGR01249 248 NIPTYIVHGRYDLCCPLQSAWALHKAFP-----------------------------EAELKVTNNAGHSAF--DPNNLA 296 (306)
T ss_pred CCCeEEEecCCCCCCCHHHHHHHHHhCC-----------------------------CCEEEEECCCCCCCC--ChHHHH
Confidence 5899999999999999988888887765 235788899999974 444333
Q ss_pred HH
Q 031655 131 EM 132 (155)
Q Consensus 131 ~~ 132 (155)
.+
T Consensus 297 ~i 298 (306)
T TIGR01249 297 AL 298 (306)
T ss_pred HH
Confidence 33
No 60
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=95.20 E-value=0.057 Score=37.70 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=37.3
Q ss_pred HHhhcCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCcccc
Q 031655 46 GLLEDGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHM 120 (155)
Q Consensus 46 ~LL~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHm 120 (155)
.+-...++|++..|+.|.+++....+.+.+.++. +-+++.+.|+||+
T Consensus 99 ~~~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~~----------------------------~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 99 DLAKIRIPVLFIHGENDPLVPPEQVRRLYEALPG----------------------------PKELYIIPGAGHF 145 (145)
T ss_dssp HHTTTTSEEEEEEETT-SSSHHHHHHHHHHHHCS----------------------------SEEEEEETTS-TT
T ss_pred hhhccCCcEEEEEECCCCcCCHHHHHHHHHHcCC----------------------------CcEEEEeCCCcCc
Confidence 3445679999999999999999999998888872 2367999999996
No 61
>COG0400 Predicted esterase [General function prediction only]
Probab=95.09 E-value=0.037 Score=42.99 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=43.8
Q ss_pred cCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHH
Q 031655 50 DGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAA 129 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~ 129 (155)
++.+|++-+|..|.+||...+++..+.|.-.|. +..+.++. .||.+|.+-=+++
T Consensus 145 ~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~-------------------------~v~~~~~~-~GH~i~~e~~~~~ 198 (207)
T COG0400 145 AGTPILLSHGTEDPVVPLALAEALAEYLTASGA-------------------------DVEVRWHE-GGHEIPPEELEAA 198 (207)
T ss_pred CCCeEEEeccCcCCccCHHHHHHHHHHHHHcCC-------------------------CEEEEEec-CCCcCCHHHHHHH
Confidence 579999999999999999999999988864432 35566666 9999987555444
Q ss_pred HH
Q 031655 130 LE 131 (155)
Q Consensus 130 ~~ 131 (155)
..
T Consensus 199 ~~ 200 (207)
T COG0400 199 RS 200 (207)
T ss_pred HH
Confidence 44
No 62
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=95.09 E-value=0.083 Score=42.83 Aligned_cols=68 Identities=19% Similarity=0.297 Sum_probs=51.2
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCc--CCCcHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVP--MDQPKA 128 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP--~dqP~~ 128 (155)
+.+|+||+|..|-++|+..+...++++-=.|. .+++|.++.+++|+.. ...|.+
T Consensus 219 ~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~------------------------a~V~~~~~~~~~H~~~~~~~~~~a 274 (290)
T PF03583_consen 219 TVPVLIYQGTADEVVPPADTDALVAKWCAAGG------------------------ADVEYVRYPGGGHLGAAFASAPDA 274 (290)
T ss_pred CCCEEEEecCCCCCCChHHHHHHHHHHHHcCC------------------------CCEEEEecCCCChhhhhhcCcHHH
Confidence 58999999999999999999999998863331 1588999999999965 466665
Q ss_pred HHHHHHHHHcCCCCC
Q 031655 129 ALEMLRRWMEGSLSE 143 (155)
Q Consensus 129 ~~~~~~~fl~~~~~~ 143 (155)
. .-|.+=+.|++.+
T Consensus 275 ~-~Wl~~rf~G~~~~ 288 (290)
T PF03583_consen 275 L-AWLDDRFAGKPAT 288 (290)
T ss_pred H-HHHHHHHCCCCCC
Confidence 4 4444445566544
No 63
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=94.76 E-value=0.087 Score=43.42 Aligned_cols=60 Identities=15% Similarity=0.245 Sum_probs=43.2
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
.-+||+..|-.+--+|.....+.....+ +..+..+.+|||+|..|+|+...
T Consensus 253 ~~pvlfi~g~~S~fv~~~~~~~~~~~fp-----------------------------~~e~~~ld~aGHwVh~E~P~~~~ 303 (315)
T KOG2382|consen 253 TGPVLFIKGLQSKFVPDEHYPRMEKIFP-----------------------------NVEVHELDEAGHWVHLEKPEEFI 303 (315)
T ss_pred ccceeEEecCCCCCcChhHHHHHHHhcc-----------------------------chheeecccCCceeecCCHHHHH
Confidence 4567777776666666554444443332 35677888899999999999999
Q ss_pred HHHHHHHcC
Q 031655 131 EMLRRWMEG 139 (155)
Q Consensus 131 ~~~~~fl~~ 139 (155)
.++..|+..
T Consensus 304 ~~i~~Fl~~ 312 (315)
T KOG2382|consen 304 ESISEFLEE 312 (315)
T ss_pred HHHHHHhcc
Confidence 999998853
No 64
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=94.50 E-value=0.086 Score=41.92 Aligned_cols=70 Identities=9% Similarity=0.023 Sum_probs=45.9
Q ss_pred HhhcCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccC-cCCC
Q 031655 47 LLEDGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMV-PMDQ 125 (155)
Q Consensus 47 LL~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmv-P~dq 125 (155)
|.+-+.++|+..|+.|... ..+.+.+.-. .. +..- -...+.+++++.+|||.+ +.+.
T Consensus 203 l~~~~~P~ll~~g~~D~~~-----~~~~~~~~~~--~~-----~~~~----------l~~~~v~~~~~~~~~H~l~~e~~ 260 (274)
T TIGR03100 203 LERFQGPVLFILSGNDLTA-----QEFADSVLGE--PA-----WRGA----------LEDPGIERVEIDGADHTFSDRVW 260 (274)
T ss_pred HHhcCCcEEEEEcCcchhH-----HHHHHHhccC--hh-----hHHH----------hhcCCeEEEecCCCCcccccHHH
Confidence 3345789999999999863 2333332100 00 0000 011467899999999999 6677
Q ss_pred cHHHHHHHHHHHc
Q 031655 126 PKAALEMLRRWME 138 (155)
Q Consensus 126 P~~~~~~~~~fl~ 138 (155)
++...+.|.+||.
T Consensus 261 ~~~v~~~i~~wL~ 273 (274)
T TIGR03100 261 REWVAARTTEWLR 273 (274)
T ss_pred HHHHHHHHHHHHh
Confidence 7999999999984
No 65
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=94.46 E-value=0.087 Score=47.05 Aligned_cols=58 Identities=24% Similarity=0.383 Sum_probs=46.9
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
..++||.+|..|..||...++++.+.|+-.|. +..++.+++.||-.+. |+...
T Consensus 551 ~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~-------------------------~~~~~~~p~e~H~~~~--~~~~~ 603 (620)
T COG1506 551 KTPLLLIHGEEDDRVPIEQAEQLVDALKRKGK-------------------------PVELVVFPDEGHGFSR--PENRV 603 (620)
T ss_pred CCCEEEEeecCCccCChHHHHHHHHHHHHcCc-------------------------eEEEEEeCCCCcCCCC--chhHH
Confidence 46999999999999999999999999985543 4689999999999887 54444
Q ss_pred HHHHH
Q 031655 131 EMLRR 135 (155)
Q Consensus 131 ~~~~~ 135 (155)
++++.
T Consensus 604 ~~~~~ 608 (620)
T COG1506 604 KVLKE 608 (620)
T ss_pred HHHHH
Confidence 44433
No 66
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=94.39 E-value=0.11 Score=42.81 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=46.3
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCc---H
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQP---K 127 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP---~ 127 (155)
.++||+..|+.|.++|+..++.+.+.+.- ...++..+ .+||+.+.+.| +
T Consensus 286 ~~Pvliv~G~~D~i~~~~~~~~~~~~~~~---------------------------~~~~~~~~-~~gH~~~~~~~~~~~ 337 (350)
T TIGR01836 286 KMPILNIYAERDHLVPPDASKALNDLVSS---------------------------EDYTELSF-PGGHIGIYVSGKAQK 337 (350)
T ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHcCC---------------------------CCeEEEEc-CCCCEEEEECchhHh
Confidence 58999999999999999999988887751 12344444 48999988766 5
Q ss_pred HHHHHHHHHHcC
Q 031655 128 AALEMLRRWMEG 139 (155)
Q Consensus 128 ~~~~~~~~fl~~ 139 (155)
..+.-+.+|+..
T Consensus 338 ~v~~~i~~wl~~ 349 (350)
T TIGR01836 338 EVPPAIGKWLQA 349 (350)
T ss_pred hhhHHHHHHHHh
Confidence 666777778753
No 67
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=94.30 E-value=0.12 Score=44.85 Aligned_cols=90 Identities=19% Similarity=0.213 Sum_probs=64.6
Q ss_pred hhchHHHHhhcCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccc
Q 031655 40 LEVGIPGLLEDGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGH 119 (155)
Q Consensus 40 ~~~~l~~LL~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGH 119 (155)
..+.|....++|=|+|+|+|..|.++|..++.++-+++.-.-... .. ++. +-+.|..|+|-||
T Consensus 342 ~~pDLsaF~~~GGKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~--~~---------~v~------dF~RlF~vPGm~H 404 (474)
T PF07519_consen 342 TDPDLSAFRARGGKLILYHGWADPLIPPQGTIDYYERVVARMGGA--LA---------DVD------DFYRLFMVPGMGH 404 (474)
T ss_pred CCcCHHHHHhcCCeEEEEecCCCCccCCCcHHHHHHHHHHhcccc--cc---------ccc------ceeEEEecCCCcc
Confidence 334566666788999999999999999999999988775211000 00 111 2257999999999
Q ss_pred cC--cCCCcHHHHHHHHHHHcCCCCCCCC
Q 031655 120 MV--PMDQPKAALEMLRRWMEGSLSEVPA 146 (155)
Q Consensus 120 mv--P~dqP~~~~~~~~~fl~~~~~~~~~ 146 (155)
.. |-..|-.++..|.+|+.+..-|+.+
T Consensus 405 C~gG~g~~~~d~l~aL~~WVE~G~AP~~l 433 (474)
T PF07519_consen 405 CGGGPGPDPFDALTALVDWVENGKAPETL 433 (474)
T ss_pred cCCCCCCCCCCHHHHHHHHHhCCCCCCee
Confidence 95 4456778899999999886666554
No 68
>PRK10985 putative hydrolase; Provisional
Probab=93.66 E-value=0.2 Score=40.70 Aligned_cols=46 Identities=9% Similarity=-0.030 Sum_probs=35.6
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCC
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQ 125 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dq 125 (155)
.+++||.+|+.|.+|+........+.. .+++++.+.++||+.+.+.
T Consensus 255 ~~P~lii~g~~D~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~GH~~~~~g 300 (324)
T PRK10985 255 RKPTLIIHAKDDPFMTHEVIPKPESLP-----------------------------PNVEYQLTEHGGHVGFVGG 300 (324)
T ss_pred CCCEEEEecCCCCCCChhhChHHHHhC-----------------------------CCeEEEECCCCCceeeCCC
Confidence 689999999999999976665443222 2567889999999988764
No 69
>PRK13604 luxD acyl transferase; Provisional
Probab=92.89 E-value=0.26 Score=40.58 Aligned_cols=56 Identities=5% Similarity=0.048 Sum_probs=43.3
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
..++|+++|+.|.+||..+++.+.++++- ++..+..+.||+|.... .+....
T Consensus 202 ~~PvLiIHG~~D~lVp~~~s~~l~e~~~s---------------------------~~kkl~~i~Ga~H~l~~-~~~~~~ 253 (307)
T PRK13604 202 DIPFIAFTANNDSWVKQSEVIDLLDSIRS---------------------------EQCKLYSLIGSSHDLGE-NLVVLR 253 (307)
T ss_pred CCCEEEEEcCCCCccCHHHHHHHHHHhcc---------------------------CCcEEEEeCCCccccCc-chHHHH
Confidence 58999999999999999999999998741 13468999999999765 344333
Q ss_pred HHHH
Q 031655 131 EMLR 134 (155)
Q Consensus 131 ~~~~ 134 (155)
.+.+
T Consensus 254 ~~~~ 257 (307)
T PRK13604 254 NFYQ 257 (307)
T ss_pred HHHH
Confidence 3333
No 70
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=92.71 E-value=0.33 Score=39.47 Aligned_cols=65 Identities=14% Similarity=0.217 Sum_probs=53.1
Q ss_pred cCceEEEEecCCCccCc-hhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCc--
Q 031655 50 DGVKLLVYAGEYDLICN-WLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQP-- 126 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n-~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP-- 126 (155)
..++|||.+|..|.++. ..+..++.+.+.-. +.+++.+.||.|.+-.+.+
T Consensus 227 ~~~PvLll~g~~D~vv~~~~~~~~~~~~~~~~---------------------------~~~~~~~~g~~He~~~E~~~~ 279 (298)
T COG2267 227 IALPVLLLQGGDDRVVDNVEGLARFFERAGSP---------------------------DKELKVIPGAYHELLNEPDRA 279 (298)
T ss_pred ccCCEEEEecCCCccccCcHHHHHHHHhcCCC---------------------------CceEEecCCcchhhhcCcchH
Confidence 47999999999999999 68888888888632 3578999999999987665
Q ss_pred -HHHHHHHHHHHcCCC
Q 031655 127 -KAALEMLRRWMEGSL 141 (155)
Q Consensus 127 -~~~~~~~~~fl~~~~ 141 (155)
+.+++-+..|+....
T Consensus 280 r~~~~~~~~~~l~~~~ 295 (298)
T COG2267 280 REEVLKDILAWLAEAL 295 (298)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 578888888886643
No 71
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=92.55 E-value=0.19 Score=44.32 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=39.4
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKA 128 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~ 128 (155)
.+++|+..|..|-++|+..++.+.+.+. + -....+.++||+++.++|..
T Consensus 415 ~vPvLvV~G~~D~IvP~~sa~~l~~~i~--~---------------------------~~~~vL~~sGHi~~ienPp~ 463 (532)
T TIGR01838 415 KVPVYIIATREDHIAPWQSAYRGAALLG--G---------------------------PKTFVLGESGHIAGVVNPPS 463 (532)
T ss_pred CCCEEEEeeCCCCcCCHHHHHHHHHHCC--C---------------------------CEEEEECCCCCchHhhCCCC
Confidence 5799999999999999999998877765 1 12356789999988877754
No 72
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=92.29 E-value=0.21 Score=38.51 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=29.7
Q ss_pred cCceEEEEecCCCccCchhh-HHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccC
Q 031655 50 DGVKLLVYAGEYDLICNWLG-NSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMV 121 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g-~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmv 121 (155)
-+-+||+.+|..|.+-|... .+..+++|+=.+.. -+++.+..++|||++
T Consensus 114 i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~-----------------------~~~~~l~Y~~aGH~i 163 (213)
T PF08840_consen 114 IKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFP-----------------------HNVEHLSYPGAGHLI 163 (213)
T ss_dssp --SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT----------------------------EEEEETTB-S--
T ss_pred cCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCC-----------------------CcceEEEcCCCCcee
Confidence 35799999999999987766 44566778633211 157889999999995
No 73
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=91.61 E-value=0.59 Score=39.76 Aligned_cols=58 Identities=12% Similarity=0.045 Sum_probs=45.7
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
.+++|+.+|..|.+||....+.+.+... +..++.++++ | ..++|+.++
T Consensus 355 ~~PvLiI~G~~D~ivP~~~a~~l~~~~~-----------------------------~~~l~~i~~~-~--~~e~~~~~~ 402 (414)
T PRK05077 355 PTPMLSGYWKNDPFSPEEDSRLIASSSA-----------------------------DGKLLEIPFK-P--VYRNFDKAL 402 (414)
T ss_pred CCcEEEEecCCCCCCCHHHHHHHHHhCC-----------------------------CCeEEEccCC-C--ccCCHHHHH
Confidence 4799999999999999999997765543 2356778876 3 246999999
Q ss_pred HHHHHHHcCC
Q 031655 131 EMLRRWMEGS 140 (155)
Q Consensus 131 ~~~~~fl~~~ 140 (155)
..+.+||...
T Consensus 403 ~~i~~wL~~~ 412 (414)
T PRK05077 403 QEISDWLEDR 412 (414)
T ss_pred HHHHHHHHHH
Confidence 9999998643
No 74
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=89.62 E-value=0.65 Score=34.73 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=35.4
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcC
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPM 123 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~ 123 (155)
.++.+++.++.|..||+.-++.+.+.++ ..++.+.++||+-..
T Consensus 114 ~~~~~viaS~nDp~vp~~~a~~~A~~l~------------------------------a~~~~~~~~GHf~~~ 156 (171)
T PF06821_consen 114 PFPSIVIASDNDPYVPFERAQRLAQRLG------------------------------AELIILGGGGHFNAA 156 (171)
T ss_dssp HCCEEEEEETTBSSS-HHHHHHHHHHHT-------------------------------EEEEETS-TTSSGG
T ss_pred CCCeEEEEcCCCCccCHHHHHHHHHHcC------------------------------CCeEECCCCCCcccc
Confidence 3677999999999999999999999995 468999999999764
No 75
>PRK07868 acyl-CoA synthetase; Validated
Probab=88.90 E-value=0.98 Score=42.56 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=51.7
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeE-EEEcCccccCc---CCCc
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSF-LKVHDSGHMVP---MDQP 126 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf-~~V~~AGHmvP---~dqP 126 (155)
..++|+..|..|.++|...++.+.+.+. +..+ ..+.++|||.+ ..-|
T Consensus 297 ~~P~L~i~G~~D~ivp~~~~~~l~~~i~-----------------------------~a~~~~~~~~~GH~g~~~g~~a~ 347 (994)
T PRK07868 297 TCPVLAFVGEVDDIGQPASVRGIRRAAP-----------------------------NAEVYESLIRAGHFGLVVGSRAA 347 (994)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHhCC-----------------------------CCeEEEEeCCCCCEeeeechhhh
Confidence 4799999999999999999999887774 2234 46689999965 4677
Q ss_pred HHHHHHHHHHHcC----CCCCCCCC
Q 031655 127 KAALEMLRRWMEG----SLSEVPAG 147 (155)
Q Consensus 127 ~~~~~~~~~fl~~----~~~~~~~~ 147 (155)
+.....+.+||.. .+.|.+++
T Consensus 348 ~~~wp~i~~wl~~~~~~~~~~~~~~ 372 (994)
T PRK07868 348 QQTWPTVADWVKWLEGDGDKPENIH 372 (994)
T ss_pred hhhChHHHHHHHHhccCCCCCcccc
Confidence 7778888899964 34555543
No 76
>PRK11071 esterase YqiA; Provisional
Probab=87.72 E-value=1.7 Score=32.71 Aligned_cols=55 Identities=5% Similarity=-0.006 Sum_probs=43.8
Q ss_pred cCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHH
Q 031655 50 DGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAA 129 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~ 129 (155)
...+|+|.+|..|-++|+..+.+..+.. ..+.+.||+|.- ...+..
T Consensus 135 ~~~~v~iihg~~De~V~~~~a~~~~~~~--------------------------------~~~~~~ggdH~f--~~~~~~ 180 (190)
T PRK11071 135 SPDLIWLLQQTGDEVLDYRQAVAYYAAC--------------------------------RQTVEEGGNHAF--VGFERY 180 (190)
T ss_pred ChhhEEEEEeCCCCcCCHHHHHHHHHhc--------------------------------ceEEECCCCcch--hhHHHh
Confidence 4568899999999999999998888743 245779999987 333888
Q ss_pred HHHHHHHHc
Q 031655 130 LEMLRRWME 138 (155)
Q Consensus 130 ~~~~~~fl~ 138 (155)
+..+..|+.
T Consensus 181 ~~~i~~fl~ 189 (190)
T PRK11071 181 FNQIVDFLG 189 (190)
T ss_pred HHHHHHHhc
Confidence 888888874
No 77
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=87.46 E-value=1.1 Score=35.89 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=45.2
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
..+|||++|..|-++|+.-..+.....+= .....+|+||||--..--|+ -.
T Consensus 192 ~~PVLiiHgtdDevv~~sHg~~Lye~~k~----------------------------~~epl~v~g~gH~~~~~~~~-yi 242 (258)
T KOG1552|consen 192 TCPVLIIHGTDDEVVDFSHGKALYERCKE----------------------------KVEPLWVKGAGHNDIELYPE-YI 242 (258)
T ss_pred cCCEEEEecccCceecccccHHHHHhccc----------------------------cCCCcEEecCCCcccccCHH-HH
Confidence 46999999999999999888877766641 13467899999998876665 45
Q ss_pred HHHHHHHcC
Q 031655 131 EMLRRWMEG 139 (155)
Q Consensus 131 ~~~~~fl~~ 139 (155)
+.+++|+..
T Consensus 243 ~~l~~f~~~ 251 (258)
T KOG1552|consen 243 EHLRRFISS 251 (258)
T ss_pred HHHHHHHHH
Confidence 556667654
No 78
>PLN02442 S-formylglutathione hydrolase
Probab=84.34 E-value=1.9 Score=34.47 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=36.3
Q ss_pred cCceEEEEecCCCccCchh-hHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCc
Q 031655 50 DGVKLLVYAGEYDLICNWL-GNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVP 122 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~-g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP 122 (155)
.+.++||.+|+.|.+|+.. .++.+.+.++=.| .+.++..++|++|-.+
T Consensus 216 ~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g-------------------------~~~~~~~~pg~~H~~~ 264 (283)
T PLN02442 216 VSATILIDQGEADKFLKEQLLPENFEEACKEAG-------------------------APVTLRLQPGYDHSYF 264 (283)
T ss_pred cCCCEEEEECCCCccccccccHHHHHHHHHHcC-------------------------CCeEEEEeCCCCccHH
Confidence 4689999999999999974 4677776664111 1468899999999755
No 79
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=81.44 E-value=4.3 Score=30.71 Aligned_cols=64 Identities=20% Similarity=0.142 Sum_probs=38.6
Q ss_pred HhhcCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCcccc--Cc--
Q 031655 47 LLEDGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHM--VP-- 122 (155)
Q Consensus 47 LL~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHm--vP-- 122 (155)
.-+-..++|+..|..|..++....+...+.|+=.+ ..+.+.+.+|++|= .+
T Consensus 141 ~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~-------------------------~~~~~~~y~ga~HgF~~~~~ 195 (218)
T PF01738_consen 141 APKIKAPVLILFGENDPFFPPEEVEALEEALKAAG-------------------------VDVEVHVYPGAGHGFANPSR 195 (218)
T ss_dssp GGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTT-------------------------TTEEEEEETT--TTTTSTTS
T ss_pred hcccCCCEeecCccCCCCCChHHHHHHHHHHHhcC-------------------------CcEEEEECCCCcccccCCCC
Confidence 33456899999999999999999888888885222 24678889999996 22
Q ss_pred -CCCcHHHHHHHHH
Q 031655 123 -MDQPKAALEMLRR 135 (155)
Q Consensus 123 -~dqP~~~~~~~~~ 135 (155)
.++++++.+..++
T Consensus 196 ~~~~~~aa~~a~~~ 209 (218)
T PF01738_consen 196 PPYDPAAAEDAWQR 209 (218)
T ss_dssp TT--HHHHHHHHHH
T ss_pred cccCHHHHHHHHHH
Confidence 2344555444433
No 80
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=81.43 E-value=5.4 Score=31.47 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=36.6
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCc
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQP 126 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP 126 (155)
.++.|-.-|+.|.++|..-++..++.-. . ..+....+||+||.-.|
T Consensus 163 ~~PSLHi~G~~D~iv~~~~s~~L~~~~~--------~----------------------a~vl~HpggH~VP~~~~ 208 (230)
T KOG2551|consen 163 STPSLHIFGETDTIVPSERSEQLAESFK--------D----------------------ATVLEHPGGHIVPNKAK 208 (230)
T ss_pred CCCeeEEecccceeecchHHHHHHHhcC--------C----------------------CeEEecCCCccCCCchH
Confidence 4678888899999999998888887764 1 14667889999998765
No 81
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=80.96 E-value=6 Score=30.31 Aligned_cols=61 Identities=26% Similarity=0.341 Sum_probs=47.0
Q ss_pred ceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcH---H
Q 031655 52 VKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPK---A 128 (155)
Q Consensus 52 irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~---~ 128 (155)
.++|+.+|..|.++|....+.......-. ......+.+++|..+.+.+. .
T Consensus 233 ~P~l~~~G~~D~~vp~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~H~~~~~~~~~~~~ 285 (299)
T COG1073 233 RPVLLVHGERDEVVPLRDAEDLYEAARER---------------------------PKKLLFVPGGGHIDLYDNPPAVEQ 285 (299)
T ss_pred cceEEEecCCCcccchhhhHHHHhhhccC---------------------------CceEEEecCCccccccCccHHHHH
Confidence 79999999999999998888887766410 24678888899999976655 5
Q ss_pred HHHHHHHHHcC
Q 031655 129 ALEMLRRWMEG 139 (155)
Q Consensus 129 ~~~~~~~fl~~ 139 (155)
++.-+.+|+..
T Consensus 286 ~~~~~~~f~~~ 296 (299)
T COG1073 286 ALDKLAEFLER 296 (299)
T ss_pred HHHHHHHHHHH
Confidence 66666667654
No 82
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=78.50 E-value=2.3 Score=32.51 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=32.0
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKA 128 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~ 128 (155)
.+++|-..|..|.+++...++...+...= . ..+.....||.+|...+..
T Consensus 161 ~iPtlHv~G~~D~~~~~~~s~~L~~~~~~----------------------------~-~~v~~h~gGH~vP~~~~~~ 209 (212)
T PF03959_consen 161 SIPTLHVIGENDPVVPPERSEALAEMFDP----------------------------D-ARVIEHDGGHHVPRKKEDV 209 (212)
T ss_dssp --EEEEEEETT-SSS-HHHHHHHHHHHHH----------------------------H-EEEEEESSSSS----HHHH
T ss_pred CCCeEEEEeCCCCCcchHHHHHHHHhccC----------------------------C-cEEEEECCCCcCcCChhhc
Confidence 68999999999999998888887776641 1 3567788999999877653
No 83
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=74.44 E-value=14 Score=31.26 Aligned_cols=66 Identities=14% Similarity=0.086 Sum_probs=50.1
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcC-CCcHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPM-DQPKAA 129 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~-dqP~~~ 129 (155)
.++-+|.+|-.|--...-.+..+.+.|+ |.+ .+-.++|+||..-. +--+..
T Consensus 262 ~~PK~ii~atgDeFf~pD~~~~y~d~L~--G~K--------------------------~lr~vPN~~H~~~~~~~~~~l 313 (367)
T PF10142_consen 262 TMPKYIINATGDEFFVPDSSNFYYDKLP--GEK--------------------------YLRYVPNAGHSLIGSDVVQSL 313 (367)
T ss_pred CccEEEEecCCCceeccCchHHHHhhCC--CCe--------------------------eEEeCCCCCcccchHHHHHHH
Confidence 5899999999998888888888999987 321 45678999998544 444555
Q ss_pred HHHHHHHHcCCCCCC
Q 031655 130 LEMLRRWMEGSLSEV 144 (155)
Q Consensus 130 ~~~~~~fl~~~~~~~ 144 (155)
...+.+.+.|.++|.
T Consensus 314 ~~f~~~~~~~~~lP~ 328 (367)
T PF10142_consen 314 RAFYNRIQNGRPLPQ 328 (367)
T ss_pred HHHHHHHHcCCCCCe
Confidence 566677778888884
No 84
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=72.56 E-value=4 Score=31.66 Aligned_cols=56 Identities=11% Similarity=0.287 Sum_probs=38.5
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
-.+++|..|+.|-++...-...|.+.. .++++++.+|.|+-.-.-..-.
T Consensus 149 P~~~lvi~g~~Ddvv~l~~~l~~~~~~------------------------------~~~~i~i~~a~HFF~gKl~~l~- 197 (210)
T COG2945 149 PSPGLVIQGDADDVVDLVAVLKWQESI------------------------------KITVITIPGADHFFHGKLIELR- 197 (210)
T ss_pred CCCceeEecChhhhhcHHHHHHhhcCC------------------------------CCceEEecCCCceecccHHHHH-
Confidence 578999999999665554444444432 3678999999999877555543
Q ss_pred HHHHHHH
Q 031655 131 EMLRRWM 137 (155)
Q Consensus 131 ~~~~~fl 137 (155)
+.+.+|+
T Consensus 198 ~~i~~~l 204 (210)
T COG2945 198 DTIADFL 204 (210)
T ss_pred HHHHHHh
Confidence 4444455
No 85
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=72.43 E-value=11 Score=30.18 Aligned_cols=59 Identities=22% Similarity=0.379 Sum_probs=46.0
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
..+|.++.|+.|.+|...-...|-+..+ +.++ ..+...|||-+.++.+...
T Consensus 176 ~~pi~~~~G~~D~~vs~~~~~~W~~~t~----------------------------~~f~-l~~fdGgHFfl~~~~~~v~ 226 (244)
T COG3208 176 ACPIHAFGGEKDHEVSRDELGAWREHTK----------------------------GDFT-LRVFDGGHFFLNQQREEVL 226 (244)
T ss_pred CcceEEeccCcchhccHHHHHHHHHhhc----------------------------CCce-EEEecCcceehhhhHHHHH
Confidence 4799999999999999887777766543 1233 3456679999999998888
Q ss_pred HHHHHHHc
Q 031655 131 EMLRRWME 138 (155)
Q Consensus 131 ~~~~~fl~ 138 (155)
..+.+.+.
T Consensus 227 ~~i~~~l~ 234 (244)
T COG3208 227 ARLEQHLA 234 (244)
T ss_pred HHHHHHhh
Confidence 88887774
No 86
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=70.52 E-value=10 Score=29.94 Aligned_cols=108 Identities=11% Similarity=0.109 Sum_probs=66.2
Q ss_pred cccCcHHHHHHhCCCC-CCceecchhHhhhh-hcccccc-------hhc---------hHHHHhh-cCceEEEEecCCCc
Q 031655 3 KFLNDKSVREAIGVGD-IEFVSCSPTVYQAM-LVDWMRN-------LEV---------GIPGLLE-DGVKLLVYAGEYDL 63 (155)
Q Consensus 3 ~ylN~~~V~~aL~v~~-~~w~~c~~~V~~~~-~~d~~~~-------~~~---------~l~~LL~-~~irVLiY~Gd~D~ 63 (155)
+|+|..+++..=|+.+ ..|..-..+.+++. ..+.++. ... +-..+|. -.+++||.+|..|.
T Consensus 149 ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp 228 (277)
T KOG2984|consen 149 AYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWAAWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDP 228 (277)
T ss_pred ceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHHHHHHHHHHHhhcCCCchHhhhcccccCCeeEeeCCcCC
Confidence 6889988888888874 46765443332221 1111110 000 1112222 36899999999999
Q ss_pred cCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHHHHHHHHHcC
Q 031655 64 ICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAALEMLRRWMEG 139 (155)
Q Consensus 64 i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~~~~~~fl~~ 139 (155)
.|+-...- ||..+. ..-.+...+..+|-..+.-|+.-..++.+|++.
T Consensus 229 ~~~~~hv~-fi~~~~----------------------------~~a~~~~~peGkHn~hLrya~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 229 FCGDPHVC-FIPVLK----------------------------SLAKVEIHPEGKHNFHLRYAKEFNKLVLDFLKS 275 (277)
T ss_pred CCCCCCcc-chhhhc----------------------------ccceEEEccCCCcceeeechHHHHHHHHHHHhc
Confidence 99864432 333332 012356677889999999999988999999865
No 87
>PRK10115 protease 2; Provisional
Probab=69.23 E-value=11 Score=34.33 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=25.6
Q ss_pred Cce-EEEEecCCCccCchhhHHHHHhccc
Q 031655 51 GVK-LLVYAGEYDLICNWLGNSRWVHAME 78 (155)
Q Consensus 51 ~ir-VLiY~Gd~D~i~n~~g~~~~i~~l~ 78 (155)
.++ +||.+|..|..||+..++.|...|.
T Consensus 605 ~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr 633 (686)
T PRK10115 605 AYPHLLVTTGLHDSQVQYWEPAKWVAKLR 633 (686)
T ss_pred CCCceeEEecCCCCCcCchHHHHHHHHHH
Confidence 578 6788999999999999999999996
No 88
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=68.34 E-value=15 Score=29.18 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=49.3
Q ss_pred HHhhcCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEc-CccccCcCC
Q 031655 46 GLLEDGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVH-DSGHMVPMD 124 (155)
Q Consensus 46 ~LL~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~-~AGHmvP~d 124 (155)
.+-+-..+||+..|+.|-+||.....+|-+.++=. + .+.-+++.+++.+.-.+. .+=-..|.|
T Consensus 159 D~~~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~--------~--------~~~~~v~~f~g~~HGf~~~r~~~~~Ped 222 (242)
T KOG3043|consen 159 DIANVKAPILFLFAELDEDVPPKDVKAWEEKLKEN--------P--------AVGSQVKTFSGVGHGFVARRANISSPED 222 (242)
T ss_pred HHhcCCCCEEEEeecccccCCHHHHHHHHHHHhcC--------c--------ccceeEEEcCCccchhhhhccCCCChhH
Confidence 33344689999999999999999999998888621 1 112244444443333322 333345777
Q ss_pred Cc--HHHHHHHHHHHc
Q 031655 125 QP--KAALEMLRRWME 138 (155)
Q Consensus 125 qP--~~~~~~~~~fl~ 138 (155)
++ +.+++.+..|+.
T Consensus 223 ~~~~eea~~~~~~Wf~ 238 (242)
T KOG3043|consen 223 KKAAEEAYQRFISWFK 238 (242)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 77 567777777764
No 89
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=67.14 E-value=13 Score=30.70 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=32.9
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCC
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQ 125 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dq 125 (155)
..+||+-.|-.|.+||+.++-...++|+ +. =.....+..||..+.+.
T Consensus 262 ~~pvl~~~gl~D~~cPP~t~fA~yN~i~--~~--------------------------K~l~vyp~~~He~~~~~ 308 (320)
T PF05448_consen 262 KCPVLFSVGLQDPVCPPSTQFAAYNAIP--GP--------------------------KELVVYPEYGHEYGPEF 308 (320)
T ss_dssp -SEEEEEEETT-SSS-HHHHHHHHCC----SS--------------------------EEEEEETT--SSTTHHH
T ss_pred CCCEEEEEecCCCCCCchhHHHHHhccC--CC--------------------------eeEEeccCcCCCchhhH
Confidence 5799999999999999999999999996 21 14677888999876544
No 90
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=65.60 E-value=5.6 Score=31.08 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=23.7
Q ss_pred cCceEEEEecCCCccCchhhHHHHHhcc
Q 031655 50 DGVKLLVYAGEYDLICNWLGNSRWVHAM 77 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~~~i~~l 77 (155)
.+++++|++|+.|..|++.-.++.++++
T Consensus 168 ~~~P~~v~hG~~D~tV~~~n~~~~~~q~ 195 (220)
T PF10503_consen 168 PGYPRIVFHGTADTTVNPQNADQLVAQW 195 (220)
T ss_pred CCCCEEEEecCCCCccCcchHHHHHHHH
Confidence 3689999999999999998888777654
No 91
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=64.86 E-value=27 Score=28.92 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=44.7
Q ss_pred cCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcC-CCc--
Q 031655 50 DGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPM-DQP-- 126 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~-dqP-- 126 (155)
-.+++||.+|+.|.+|-..+++...+.-.=.. =|+-..+|+-|-.-. +-+
T Consensus 245 vtvPflilHG~dD~VTDp~~Sk~Lye~A~S~D---------------------------KTlKlYpGm~H~Ll~gE~~en 297 (313)
T KOG1455|consen 245 VTVPFLILHGTDDKVTDPKVSKELYEKASSSD---------------------------KTLKLYPGMWHSLLSGEPDEN 297 (313)
T ss_pred ccccEEEEecCCCcccCcHHHHHHHHhccCCC---------------------------CceeccccHHHHhhcCCCchh
Confidence 36899999999999999999999987654211 156777889998765 333
Q ss_pred -HHHHHHHHHHHcC
Q 031655 127 -KAALEMLRRWMEG 139 (155)
Q Consensus 127 -~~~~~~~~~fl~~ 139 (155)
+..+.=|.+||..
T Consensus 298 ~e~Vf~DI~~Wl~~ 311 (313)
T KOG1455|consen 298 VEIVFGDIISWLDE 311 (313)
T ss_pred HHHHHHHHHHHHHh
Confidence 3344444557653
No 92
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=63.75 E-value=9.5 Score=31.49 Aligned_cols=42 Identities=24% Similarity=0.407 Sum_probs=32.0
Q ss_pred CceeEEEEcCccccCcCCCcHHHHHHHHHH-HcCCCCCCCCCC
Q 031655 107 GPLSFLKVHDSGHMVPMDQPKAALEMLRRW-MEGSLSEVPAGS 148 (155)
Q Consensus 107 ~~ltf~~V~~AGHmvP~dqP~~~~~~~~~f-l~~~~~~~~~~~ 148 (155)
+.+.+.....+||.|.+|.|......+-.| .+++..+..++.
T Consensus 294 Gk~Q~~vL~~~GH~v~ED~P~kva~~~~~f~~Rn~~~~~~~g~ 336 (343)
T KOG2564|consen 294 GKFQLQVLPLCGHFVHEDSPHKVAECLCVFWIRNRFAEPKVGA 336 (343)
T ss_pred cceeeeeecccCceeccCCcchHHHHHHHHHhhhccccccccc
Confidence 568899999999999999997666555555 566666666654
No 93
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=60.41 E-value=4.1 Score=33.19 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=43.5
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKAAL 130 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~~~ 130 (155)
+.+||+..|+.-.-. ..+...-.+|+- .+-|++.|.++|=+|-.+||+...
T Consensus 219 ~c~vLlvvG~~Sp~~--~~vv~~ns~Ldp---------------------------~~ttllkv~dcGglV~eEqP~kla 269 (283)
T PF03096_consen 219 GCPVLLVVGDNSPHV--DDVVEMNSKLDP---------------------------TKTTLLKVADCGGLVLEEQPGKLA 269 (283)
T ss_dssp CS-EEEEEETTSTTH--HHHHHHHHHS-C---------------------------CCEEEEEETT-TT-HHHH-HHHHH
T ss_pred CCCeEEEEecCCcch--hhHHHHHhhcCc---------------------------ccceEEEecccCCcccccCcHHHH
Confidence 589999999875433 223445556641 135899999999999999999999
Q ss_pred HHHHHHHcCCC
Q 031655 131 EMLRRWMEGSL 141 (155)
Q Consensus 131 ~~~~~fl~~~~ 141 (155)
+.|+-|++|.-
T Consensus 270 ea~~lFlQG~G 280 (283)
T PF03096_consen 270 EAFKLFLQGMG 280 (283)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHccCC
Confidence 99999998853
No 94
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=58.52 E-value=33 Score=31.78 Aligned_cols=29 Identities=21% Similarity=0.152 Sum_probs=26.0
Q ss_pred cCceEEEEecCCCccCchhhHHHHHhccc
Q 031655 50 DGVKLLVYAGEYDLICNWLGNSRWVHAME 78 (155)
Q Consensus 50 ~~irVLiY~Gd~D~i~n~~g~~~~i~~l~ 78 (155)
-.++||+.+|-.|..++..++.++.+.|.
T Consensus 454 IkvPvLlIhGw~D~~V~~~~s~~ly~aL~ 482 (767)
T PRK05371 454 IKASVLVVHGLNDWNVKPKQVYQWWDALP 482 (767)
T ss_pred CCCCEEEEeeCCCCCCChHHHHHHHHHHH
Confidence 46899999999999999999988888885
No 95
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=58.39 E-value=7.6 Score=29.32 Aligned_cols=29 Identities=17% Similarity=-0.065 Sum_probs=24.8
Q ss_pred ceEEEEecCCCccCchhhHHHHHhccccc
Q 031655 52 VKLLVYAGEYDLICNWLGNSRWVHAMEWS 80 (155)
Q Consensus 52 irVLiY~Gd~D~i~n~~g~~~~i~~l~w~ 80 (155)
-+++|.+|..|.+||....+...+.|+.-
T Consensus 169 p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 169 PIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred CeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 34689999999999999999998888643
No 96
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=58.37 E-value=3.7 Score=23.59 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=11.2
Q ss_pred ccCcHHHHHHhCC
Q 031655 4 FLNDKSVREAIGV 16 (155)
Q Consensus 4 ylN~~~V~~aL~v 16 (155)
-|++||||.+|++
T Consensus 19 ~l~DpdvqrgL~~ 31 (42)
T PF07849_consen 19 ALRDPDVQRGLGF 31 (42)
T ss_pred HHcCHHHHHHHHH
Confidence 4789999999985
No 97
>COG1647 Esterase/lipase [General function prediction only]
Probab=57.50 E-value=26 Score=27.85 Aligned_cols=61 Identities=18% Similarity=0.190 Sum_probs=47.2
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCc-HHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQP-KAA 129 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP-~~~ 129 (155)
-.+++|..|..|-++|..++....+.+.-+.+ .+.+..++||-+..|.- +..
T Consensus 181 ~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~~K---------------------------eL~~~e~SgHVIt~D~Erd~v 233 (243)
T COG1647 181 YSPTLVVQGRQDEMVPAESANFIYDHVESDDK---------------------------ELKWLEGSGHVITLDKERDQV 233 (243)
T ss_pred ccchhheecccCCCCCHHHHHHHHHhccCCcc---------------------------eeEEEccCCceeecchhHHHH
Confidence 36899999999999999999999998863221 35667889999988754 555
Q ss_pred HHHHHHHHc
Q 031655 130 LEMLRRWME 138 (155)
Q Consensus 130 ~~~~~~fl~ 138 (155)
.+-+-+||.
T Consensus 234 ~e~V~~FL~ 242 (243)
T COG1647 234 EEDVITFLE 242 (243)
T ss_pred HHHHHHHhh
Confidence 566666765
No 98
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=57.34 E-value=17 Score=29.03 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=41.0
Q ss_pred hhcCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcH
Q 031655 48 LEDGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPK 127 (155)
Q Consensus 48 L~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~ 127 (155)
++...|||-.+|..|-++|...+..+++.++ |=.+-.|.||-|---.+|-+
T Consensus 196 Id~~C~VLTvhGs~D~IVPve~AkefAk~i~-----------------------------nH~L~iIEgADHnyt~~q~~ 246 (269)
T KOG4667|consen 196 IDKQCRVLTVHGSEDEIVPVEDAKEFAKIIP-----------------------------NHKLEIIEGADHNYTGHQSQ 246 (269)
T ss_pred cCccCceEEEeccCCceeechhHHHHHHhcc-----------------------------CCceEEecCCCcCccchhhh
Confidence 4568999999999999999999999999986 12467788888876555443
No 99
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=56.83 E-value=15 Score=29.04 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=34.8
Q ss_pred CceEEEEecCCCccCch-hhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcC
Q 031655 51 GVKLLVYAGEYDLICNW-LGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPM 123 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~-~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~ 123 (155)
..+++|-+|..|..++. .....+.+.|+=.| ...++..+.|+||--..
T Consensus 211 ~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g-------------------------~~v~~~~~~g~~H~f~~ 259 (275)
T TIGR02821 211 HSTILIDQGTADQFLDEQLRPDAFEQACRAAG-------------------------QALTLRRQAGYDHSYYF 259 (275)
T ss_pred CCCeeEeecCCCcccCccccHHHHHHHHHHcC-------------------------CCeEEEEeCCCCccchh
Confidence 46889999999999998 45666666664222 13678889999997554
No 100
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=51.97 E-value=18 Score=26.83 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=32.9
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccC
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMV 121 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmv 121 (155)
--+++|+.|+.|.+++ .++.+.+.|+=.|. ..++..+.|++|--
T Consensus 166 ~Pp~~i~~g~~D~l~~--~~~~~~~~L~~~gv-------------------------~v~~~~~~g~~H~f 209 (211)
T PF07859_consen 166 LPPTLIIHGEDDVLVD--DSLRFAEKLKKAGV-------------------------DVELHVYPGMPHGF 209 (211)
T ss_dssp CHEEEEEEETTSTTHH--HHHHHHHHHHHTT--------------------------EEEEEEETTEETTG
T ss_pred CCCeeeeccccccchH--HHHHHHHHHHHCCC-------------------------CEEEEEECCCeEEe
Confidence 3589999999999875 56778888863321 35788889999864
No 101
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=50.26 E-value=33 Score=29.43 Aligned_cols=63 Identities=16% Similarity=0.082 Sum_probs=43.5
Q ss_pred ceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCc---CCCcHH
Q 031655 52 VKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVP---MDQPKA 128 (155)
Q Consensus 52 irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP---~dqP~~ 128 (155)
..+|...|..|-|||+..++...+-..--+. + .=++..+.++||+-- ..-++.
T Consensus 339 ~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s-----~-------------------~k~~~~~~~~GH~Gvf~G~r~~~~ 394 (406)
T TIGR01849 339 VALLTVEGENDDISGLGQTKAALRLCTGIPE-----D-------------------MKRHHLQPGVGHYGVFSGSRFREE 394 (406)
T ss_pred cceEEEeccCCCcCCHHHhHHHHHHhhcCCh-----h-------------------hceEeecCCCCeEEEeeChhhhhh
Confidence 6799999999999999999998875310011 0 124677788999843 345555
Q ss_pred HHHHHHHHHc
Q 031655 129 ALEMLRRWME 138 (155)
Q Consensus 129 ~~~~~~~fl~ 138 (155)
..-.+.+||.
T Consensus 395 i~P~i~~wl~ 404 (406)
T TIGR01849 395 IYPLVREFIR 404 (406)
T ss_pred hchHHHHHHH
Confidence 6666777774
No 102
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=46.82 E-value=40 Score=30.76 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=29.8
Q ss_pred HHhhcCceEEEEecCCCccCchhhHHHHHhccc
Q 031655 46 GLLEDGVKLLVYAGEYDLICNWLGNSRWVHAME 78 (155)
Q Consensus 46 ~LL~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~ 78 (155)
.||+-+.+||+..|..|..|+...-|..-++|.
T Consensus 299 ~Lldmk~PVLFV~Gsnd~mcspn~ME~vreKMq 331 (784)
T KOG3253|consen 299 ALLDMKQPVLFVIGSNDHMCSPNSMEEVREKMQ 331 (784)
T ss_pred hhHhcCCceEEEecCCcccCCHHHHHHHHHHhh
Confidence 577888999999999999999999999888885
No 103
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=45.93 E-value=71 Score=29.61 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=53.6
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCc-HHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQP-KAA 129 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP-~~~ 129 (155)
+.+.|+.+|..|.-+++..+..+++.|+-.|. .+..++.++..|-.-.-.+ ...
T Consensus 682 ~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv-------------------------~~~~~vypde~H~is~~~~~~~~ 736 (755)
T KOG2100|consen 682 TPKLLLIHGTEDDNVHFQQSAILIKALQNAGV-------------------------PFRLLVYPDENHGISYVEVISHL 736 (755)
T ss_pred cCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCC-------------------------ceEEEEeCCCCcccccccchHHH
Confidence 45689999999999999999999999985543 2577888999999876554 455
Q ss_pred HHHHHHHHcCCCCCCCC
Q 031655 130 LEMLRRWMEGSLSEVPA 146 (155)
Q Consensus 130 ~~~~~~fl~~~~~~~~~ 146 (155)
+..+.+|+. .-+..++
T Consensus 737 ~~~~~~~~~-~~~~~~~ 752 (755)
T KOG2100|consen 737 YEKLDRFLR-DCFGSPV 752 (755)
T ss_pred HHHHHHHHH-HHcCccc
Confidence 666777876 5444443
No 104
>smart00728 ChW Clostridial hydrophobic, with a conserved W residue, domain.
Probab=39.96 E-value=26 Score=20.49 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=20.1
Q ss_pred ccCCCeeeeeCCEeeeEEEEeCceeEE
Q 031655 86 VASPEIPFEVDGSEAGVLKTNGPLSFL 112 (155)
Q Consensus 86 ~~~~~~~w~~~g~~~G~~~~~~~ltf~ 112 (155)
++..|++|..||+.+|..-+...+.=+
T Consensus 4 qn~GW~~~v~~G~~aGT~G~~lriEAi 30 (46)
T smart00728 4 QNIGWQNWVSDGAIAGTVGQGLRIEAI 30 (46)
T ss_pred ccCcccccccCCeEcccCCCCceeEEE
Confidence 456789999999999987766554433
No 105
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=39.59 E-value=57 Score=27.09 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=31.3
Q ss_pred ceeEEEEcCccccCcCCCcHHHHHHHHHHHcCCCC
Q 031655 108 PLSFLKVHDSGHMVPMDQPKAALEMLRRWMEGSLS 142 (155)
Q Consensus 108 ~ltf~~V~~AGHmvP~dqP~~~~~~~~~fl~~~~~ 142 (155)
+-|++.|.++|-++..+||.+..+-+.-|+.|.-+
T Consensus 274 ~ttllk~~d~g~l~~e~qP~kl~ea~~~FlqG~Gy 308 (326)
T KOG2931|consen 274 YTTLLKMADCGGLVQEEQPGKLAEAFKYFLQGMGY 308 (326)
T ss_pred cceEEEEcccCCcccccCchHHHHHHHHHHccCCc
Confidence 45889999999999999999999999999999643
No 106
>PF05414 DUF1717: Viral domain of unknown function (DUF1717); InterPro: IPR008745 The domain is found towards the N terminus of the polyprotein of Apple stem grooving virus (strain P-209) (ASGV), Citrus tatter leaf virus and from Apple stem grooving virus (strain Korea) (ASGV) (Pear black necrotic leaf spot virus). Its function is unknown [, ].
Probab=39.16 E-value=20 Score=23.98 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=10.4
Q ss_pred cCceEEEEecCC
Q 031655 50 DGVKLLVYAGEY 61 (155)
Q Consensus 50 ~~irVLiY~Gd~ 61 (155)
-|+||+||.||.
T Consensus 39 lgyrVhiyyGdS 50 (101)
T PF05414_consen 39 LGYRVHIYYGDS 50 (101)
T ss_pred cccEEEEEecce
Confidence 389999999975
No 107
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=36.83 E-value=27 Score=30.01 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=27.6
Q ss_pred EEEEcCccccCcCCCcHHHHHHHHHHHcCCCC
Q 031655 111 FLKVHDSGHMVPMDQPKAALEMLRRWMEGSLS 142 (155)
Q Consensus 111 f~~V~~AGHmvP~dqP~~~~~~~~~fl~~~~~ 142 (155)
.+.|.|.||+ |++|=++..++.++.-.|.|+
T Consensus 258 QvMVEGPGHv-Pl~~I~~nv~lqK~lc~~APf 288 (423)
T TIGR00190 258 QCMVEGPGHV-PLDQIEANVRLQKELCDEAPF 288 (423)
T ss_pred eEEEECCCCC-cHHHHHHHHHHHHHhhCCCCe
Confidence 7889999998 999999999999998887654
No 108
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.42 E-value=35 Score=26.97 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=21.0
Q ss_pred eeEEEEeCceeEEEEcCccccCcCCCc
Q 031655 100 AGVLKTNGPLSFLKVHDSGHMVPMDQP 126 (155)
Q Consensus 100 ~G~~~~~~~ltf~~V~~AGHmvP~dqP 126 (155)
.|.++.-..-+|+.|.||||..|.+.-
T Consensus 257 ~~~v~glkt~~~lev~ga~~ylp~yag 283 (310)
T COG4569 257 VGQVSGLKTAVWLEVEGAAHYLPAYAG 283 (310)
T ss_pred ceeeeccceEEEEEEecccccCccccC
Confidence 455555566789999999999997654
No 109
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.32 E-value=1.4e+02 Score=24.79 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=16.6
Q ss_pred ceeEEEEcCccccCcCCCcH
Q 031655 108 PLSFLKVHDSGHMVPMDQPK 127 (155)
Q Consensus 108 ~ltf~~V~~AGHmvP~dqP~ 127 (155)
.+.+.+|.|.||-.|.-.+.
T Consensus 263 ~V~~y~i~g~GH~wp~~~~~ 282 (312)
T COG3509 263 RVELYTIDGGGHTWPGGTQY 282 (312)
T ss_pred ceEEEEEeCCcccCcCCCCC
Confidence 48999999999999965444
No 110
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=32.27 E-value=92 Score=27.98 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=25.4
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccc
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAME 78 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~ 78 (155)
.++++++.|..|-|+|+..+....+-+.
T Consensus 441 ~~Pvl~va~~~DHIvPw~s~~~~~~l~g 468 (560)
T TIGR01839 441 KCDSFSVAGTNDHITPWDAVYRSALLLG 468 (560)
T ss_pred CCCeEEEecCcCCcCCHHHHHHHHHHcC
Confidence 4789999999999999999999988774
No 111
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=30.63 E-value=37 Score=29.10 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=41.3
Q ss_pred chhchHHHHhh-cCceEEEEecCCCccCchhhHHHHHhcccccc---ccccccCCCeeeeeC
Q 031655 39 NLEVGIPGLLE-DGVKLLVYAGEYDLICNWLGNSRWVHAMEWSG---QKDFVASPEIPFEVD 96 (155)
Q Consensus 39 ~~~~~l~~LL~-~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g---~~~f~~~~~~~w~~~ 96 (155)
+....++.|+. ..-|+-+|-||.|-+.......+.++-|.=.. +..+.++-..||+++
T Consensus 220 ~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epyFVP 281 (423)
T COG4536 220 PWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVP 281 (423)
T ss_pred CHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCeecC
Confidence 44445666765 45799999999999999998888888775222 233344567899875
No 112
>TIGR02679 conserved hypothetical protein TIGR02679. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).
Probab=29.72 E-value=44 Score=28.45 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=26.3
Q ss_pred hHHHHhhcCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeC
Q 031655 43 GIPGLLEDGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVD 96 (155)
Q Consensus 43 ~l~~LL~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~ 96 (155)
.+..|.+.|.++ .|+||.|. |..+..+.|. ..| ..+||..+
T Consensus 290 LL~~L~~~g~~l-~YhGDfD~-----~Gi~Ia~~L~----~r~---~~~pwrmd 330 (385)
T TIGR02679 290 LLDLLAAAGARL-YYHGDFDW-----PGLRIANGLI----RRY---GARPWRFS 330 (385)
T ss_pred HHHHHHhcCCeE-EEecCCCh-----hHHHHHHHHH----HHh---CCccccCC
Confidence 455666788776 99999996 4555555553 112 26678664
No 113
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=28.59 E-value=1.1e+02 Score=23.32 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=45.1
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCc-CCCcHHH
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVP-MDQPKAA 129 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP-~dqP~~~ 129 (155)
..+-|.+.+..|.+|++...|+.++...-.|. ..+-....+++|-.. ...|+.-
T Consensus 178 ~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~-------------------------~V~~~~f~~S~HV~H~r~~p~~Y 232 (240)
T PF05705_consen 178 RCPRLYLYSKADPLIPWRDVEEHAEEARRKGW-------------------------DVRAEKFEDSPHVAHLRKHPDRY 232 (240)
T ss_pred CCCeEEecCCCCcCcCHHHHHHHHHHHHHcCC-------------------------eEEEecCCCCchhhhcccCHHHH
Confidence 45678888999999999999999987764332 234455677888876 4677877
Q ss_pred HHHHHHH
Q 031655 130 LEMLRRW 136 (155)
Q Consensus 130 ~~~~~~f 136 (155)
.+.+.+|
T Consensus 233 ~~~v~~f 239 (240)
T PF05705_consen 233 WRAVDEF 239 (240)
T ss_pred HHHHHhh
Confidence 7777766
No 114
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=28.17 E-value=40 Score=25.05 Aligned_cols=15 Identities=33% Similarity=0.840 Sum_probs=12.4
Q ss_pred hcCceEEEEecCCCc
Q 031655 49 EDGVKLLVYAGEYDL 63 (155)
Q Consensus 49 ~~~irVLiY~Gd~D~ 63 (155)
+.|.+|+|++||.|+
T Consensus 123 ~~~~~v~IvS~DkD~ 137 (169)
T PF02739_consen 123 EEGFEVIIVSGDKDL 137 (169)
T ss_dssp HTTCEEEEE-SSGGG
T ss_pred cCCCEEEEEcCCCCH
Confidence 458899999999997
No 115
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=28.12 E-value=55 Score=24.01 Aligned_cols=43 Identities=23% Similarity=0.379 Sum_probs=25.9
Q ss_pred CceecchhHhhhhhcc------------cccc--hhchHHHHhhcCceEEEEecCCCc
Q 031655 20 EFVSCSPTVYQAMLVD------------WMRN--LEVGIPGLLEDGVKLLVYAGEYDL 63 (155)
Q Consensus 20 ~w~~c~~~V~~~~~~d------------~~~~--~~~~l~~LL~~~irVLiY~Gd~D~ 63 (155)
.|.--|..|+..+... ...+ ....+..|.++|. .+-|+||.|.
T Consensus 21 V~VvENp~Vf~~~~~~~~~~~~pLVCt~G~p~~A~~~LL~~L~~~g~-~l~y~GDfDp 77 (152)
T PF09664_consen 21 VYVVENPAVFSALADELGASCPPLVCTSGQPSAAARRLLDRLAAAGA-RLYYSGDFDP 77 (152)
T ss_pred EEEEecHHHHHHHHHhcCCCCCeEEEcCCcHHHHHHHHHHHHHhCCC-EEEEecCCCH
Confidence 5666677787765322 1111 2234555656675 7789999996
No 116
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=27.45 E-value=1.2e+02 Score=19.73 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=27.4
Q ss_pred ccchhchHHHHhhcCceEEEEecCCCccCchhhHHHHHhcccc
Q 031655 37 MRNLEVGIPGLLEDGVKLLVYAGEYDLICNWLGNSRWVHAMEW 79 (155)
Q Consensus 37 ~~~~~~~l~~LL~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w 79 (155)
.+.+...+..|.++|+++.|.+|.. ....+.+++.+.+
T Consensus 26 ~~~~~~~l~~l~~~g~~i~ivS~~~-----~~~~~~~~~~~~~ 63 (139)
T cd01427 26 YPGVKEALKELKEKGIKLALATNKS-----RREVLELLEELGL 63 (139)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCch-----HHHHHHHHHHcCC
Confidence 3455667778888899999999876 4455666666654
No 117
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=25.49 E-value=82 Score=24.05 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=42.4
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCc----CCCc
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVP----MDQP 126 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP----~dqP 126 (155)
-.+.++++-..|..|++.-++.+.+.+. -.++.+-.+||.-- -+-|
T Consensus 117 pfps~vvaSrnDp~~~~~~a~~~a~~wg------------------------------s~lv~~g~~GHiN~~sG~g~wp 166 (181)
T COG3545 117 PFPSVVVASRNDPYVSYEHAEDLANAWG------------------------------SALVDVGEGGHINAESGFGPWP 166 (181)
T ss_pred CCceeEEEecCCCCCCHHHHHHHHHhcc------------------------------HhheecccccccchhhcCCCcH
Confidence 3689999999999999999999998874 13677888888843 2333
Q ss_pred HHHHHHHHHHHc
Q 031655 127 KAALEMLRRWME 138 (155)
Q Consensus 127 ~~~~~~~~~fl~ 138 (155)
+ .+..+.+|+.
T Consensus 167 e-g~~~l~~~~s 177 (181)
T COG3545 167 E-GYALLAQLLS 177 (181)
T ss_pred H-HHHHHHHHhh
Confidence 3 5566666664
No 118
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=24.67 E-value=2.5e+02 Score=22.40 Aligned_cols=65 Identities=12% Similarity=0.145 Sum_probs=41.6
Q ss_pred hcCceEEEEecC------CCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcC--cccc
Q 031655 49 EDGVKLLVYAGE------YDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHD--SGHM 120 (155)
Q Consensus 49 ~~~irVLiY~Gd------~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~--AGHm 120 (155)
.++++||-..|+ .|-++|...++..=.-++=. ....+-.+|.| |.|.
T Consensus 182 p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~-------------------------~~~Y~e~~v~G~~a~HS 236 (255)
T PF06028_consen 182 PKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNR-------------------------AKSYQEKTVTGKDAQHS 236 (255)
T ss_dssp TTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTT-------------------------SSEEEEEEEESGGGSCC
T ss_pred CCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcc-------------------------cCceEEEEEECCCCccc
Confidence 457999999999 88889887765432222200 01234566655 6899
Q ss_pred CcCCCcHHHHHHHHHHHcC
Q 031655 121 VPMDQPKAALEMLRRWMEG 139 (155)
Q Consensus 121 vP~dqP~~~~~~~~~fl~~ 139 (155)
--.+.|+.. +.|.+||-+
T Consensus 237 ~LheN~~V~-~~I~~FLw~ 254 (255)
T PF06028_consen 237 QLHENPQVD-KLIIQFLWG 254 (255)
T ss_dssp GGGCCHHHH-HHHHHHHCT
T ss_pred cCCCCHHHH-HHHHHHhcC
Confidence 777788655 666778865
No 119
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=24.56 E-value=1.4e+02 Score=24.39 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=47.8
Q ss_pred hcCceEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcCCCcHH
Q 031655 49 EDGVKLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPMDQPKA 128 (155)
Q Consensus 49 ~~~irVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~dqP~~ 128 (155)
..++.||+..||+|---+.-|+.-|..++. +.--|...+...- -....=..|-|.--.+.|.+
T Consensus 214 ~~~~evl~IaGDl~dg~~tDG~Vp~assls--~~~lf~~~~ksy~---------------e~~~~Gk~a~Hs~lhen~~v 276 (288)
T COG4814 214 SPNTEVLLIAGDLDDGKQTDGAVPWASSLS--IYHLFKKNGKSYI---------------ESLYKGKDARHSKLHENPTV 276 (288)
T ss_pred CCCcEEEEEecccccCCcCCCceechHhHH--HHHHhccCcceeE---------------EEeeeCCcchhhccCCChhH
Confidence 468999999999999888888888887764 3322322221110 01222356889988888988
Q ss_pred HHHHHHHHHcC
Q 031655 129 ALEMLRRWMEG 139 (155)
Q Consensus 129 ~~~~~~~fl~~ 139 (155)
+..+.. ||-+
T Consensus 277 ~~yv~~-FLw~ 286 (288)
T COG4814 277 AKYVKN-FLWE 286 (288)
T ss_pred HHHHHH-Hhhc
Confidence 776655 7654
No 120
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=23.80 E-value=77 Score=23.16 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=20.9
Q ss_pred chhchHHHHhhcCceEEEEecCCCccC
Q 031655 39 NLEVGIPGLLEDGVKLLVYAGEYDLIC 65 (155)
Q Consensus 39 ~~~~~l~~LL~~~irVLiY~Gd~D~i~ 65 (155)
.....+..|-+.|+++.|.+||....+
T Consensus 131 ~~~~~l~~L~~~Gi~~~i~TGD~~~~a 157 (215)
T PF00702_consen 131 GAKEALQELKEAGIKVAILTGDNESTA 157 (215)
T ss_dssp THHHHHHHHHHTTEEEEEEESSEHHHH
T ss_pred hhhhhhhhhhccCcceeeeeccccccc
Confidence 456667778788999999999975433
No 121
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=23.53 E-value=75 Score=21.65 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=16.0
Q ss_pred hhchHHHHhhcCceEEEEecCC
Q 031655 40 LEVGIPGLLEDGVKLLVYAGEY 61 (155)
Q Consensus 40 ~~~~l~~LL~~~irVLiY~Gd~ 61 (155)
....++.|+++|++|.|+.-..
T Consensus 66 l~~~l~~Ll~~G~~V~i~~q~~ 87 (113)
T PF01624_consen 66 LDKYLKKLLEAGYRVAIYEQVE 87 (113)
T ss_dssp HHHHHHHHHHTT-EEEEEEE-S
T ss_pred HHHHHHHHHHcCCEEEEEEecC
Confidence 4456888999999999997543
No 122
>PF07538 ChW: Clostridial hydrophobic W; InterPro: IPR006637 This hydrophobic repeat is found in a number of Chlostridium proteins. It contains a conserved tryptophan residue.
Probab=22.26 E-value=56 Score=17.88 Aligned_cols=24 Identities=17% Similarity=0.071 Sum_probs=17.3
Q ss_pred cCCCeeeeeCCEeeeEEEEeCcee
Q 031655 87 ASPEIPFEVDGSEAGVLKTNGPLS 110 (155)
Q Consensus 87 ~~~~~~w~~~g~~~G~~~~~~~lt 110 (155)
...|.+|..+|+.+|..-+...+.
T Consensus 4 ~~GW~~~~~~G~~aGt~G~~~rlE 27 (36)
T PF07538_consen 4 NIGWQDWVSNGQTAGTTGQGLRLE 27 (36)
T ss_pred cccCcchhhCceecccCCCCcEEE
Confidence 456888988999888776554443
No 123
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=21.77 E-value=1.3e+02 Score=21.01 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=29.1
Q ss_pred EeeeEEEEeCceeEEEEcCcccc-CcCCCcHHHHHHHHHH
Q 031655 98 SEAGVLKTNGPLSFLKVHDSGHM-VPMDQPKAALEMLRRW 136 (155)
Q Consensus 98 ~~~G~~~~~~~ltf~~V~~AGHm-vP~dqP~~~~~~~~~f 136 (155)
...|++|-.....++.|.|||.. +|........++++.+
T Consensus 28 ~~v~~~kp~~~~d~vliEGaGg~~~p~~~~~~~~d~~~~~ 67 (134)
T cd03109 28 YRVAPLKPVQTYDFVLVEGAGGLCVPLKEDFTNADVAKEL 67 (134)
T ss_pred CeEEEEecCCCCCEEEEECCCccccCCCCCCCHHHHHHHh
Confidence 45677777666899999999665 7887766666776654
No 124
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=21.21 E-value=76 Score=27.44 Aligned_cols=31 Identities=29% Similarity=0.515 Sum_probs=26.3
Q ss_pred EEEEcCccccCcCCCcHHHHHHHHHHHcCCCC
Q 031655 111 FLKVHDSGHMVPMDQPKAALEMLRRWMEGSLS 142 (155)
Q Consensus 111 f~~V~~AGHmvP~dqP~~~~~~~~~fl~~~~~ 142 (155)
.+.|.|.||+ |++|=++..++.++.-.|.|+
T Consensus 261 QvMVEGPGHv-Pl~~I~~nv~l~K~lc~~APf 291 (431)
T PRK13352 261 QVMVEGPGHV-PLDQIEANVKLQKRLCHGAPF 291 (431)
T ss_pred eEEEECCCCC-CHHHHHHHHHHHHHhhCCCCc
Confidence 7889999995 889999989999988887654
No 125
>PRK10162 acetyl esterase; Provisional
Probab=20.85 E-value=2.5e+02 Score=22.63 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=40.2
Q ss_pred eEEEEecCCCccCchhhHHHHHhccccccccccccCCCeeeeeCCEeeeEEEEeCceeEEEEcCccccCcC-----CCcH
Q 031655 53 KLLVYAGEYDLICNWLGNSRWVHAMEWSGQKDFVASPEIPFEVDGSEAGVLKTNGPLSFLKVHDSGHMVPM-----DQPK 127 (155)
Q Consensus 53 rVLiY~Gd~D~i~n~~g~~~~i~~l~w~g~~~f~~~~~~~w~~~g~~~G~~~~~~~ltf~~V~~AGHmvP~-----dqP~ 127 (155)
+++|.+|..|.++. -++.+.+.|.-.|. ..++..+.|.+|--.. +.-.
T Consensus 250 p~~i~~g~~D~L~d--e~~~~~~~L~~aGv-------------------------~v~~~~~~g~~H~f~~~~~~~~~a~ 302 (318)
T PRK10162 250 PCFIAGAEFDPLLD--DSRLLYQTLAAHQQ-------------------------PCEFKLYPGTLHAFLHYSRMMDTAD 302 (318)
T ss_pred CeEEEecCCCcCcC--hHHHHHHHHHHcCC-------------------------CEEEEEECCCceehhhccCchHHHH
Confidence 89999999999874 57778888863332 3578888888885332 2223
Q ss_pred HHHHHHHHHHcC
Q 031655 128 AALEMLRRWMEG 139 (155)
Q Consensus 128 ~~~~~~~~fl~~ 139 (155)
.+++-+.+|+..
T Consensus 303 ~~~~~~~~~l~~ 314 (318)
T PRK10162 303 DALRDGAQFFTA 314 (318)
T ss_pred HHHHHHHHHHHH
Confidence 455555566643
No 126
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=20.84 E-value=73 Score=28.43 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.5
Q ss_pred ccccCcCCCcHHHHHHHHHHHcCC
Q 031655 117 SGHMVPMDQPKAALEMLRRWMEGS 140 (155)
Q Consensus 117 AGHmvP~dqP~~~~~~~~~fl~~~ 140 (155)
+.|-.| |++.+|..|++.++.|+
T Consensus 446 ts~~~~-D~~RAAr~ILKDyv~GK 468 (562)
T KOG1424|consen 446 TSKGLP-DEYRAARYILKDYVSGK 468 (562)
T ss_pred hhccCC-cchHHHHHHHHHHhCCe
Confidence 556677 99999999999999998
No 127
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=20.56 E-value=1.9e+02 Score=20.50 Aligned_cols=38 Identities=5% Similarity=0.001 Sum_probs=26.0
Q ss_pred hchHHHHhhcCceEEEEecCCCccCc----------hhhHHHHHhccc
Q 031655 41 EVGIPGLLEDGVKLLVYAGEYDLICN----------WLGNSRWVHAME 78 (155)
Q Consensus 41 ~~~l~~LL~~~irVLiY~Gd~D~i~n----------~~g~~~~i~~l~ 78 (155)
...+.++-++|+.+.+.+|.....+. ..-|..|+++-+
T Consensus 30 ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ 77 (126)
T TIGR01689 30 IEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHN 77 (126)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcC
Confidence 33455555789999999998765543 246788886644
No 128
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=20.51 E-value=68 Score=27.64 Aligned_cols=31 Identities=29% Similarity=0.507 Sum_probs=22.2
Q ss_pred EEEEcCccccCcCCCcHHHHHHHHHHHcCCCC
Q 031655 111 FLKVHDSGHMVPMDQPKAALEMLRRWMEGSLS 142 (155)
Q Consensus 111 f~~V~~AGHmvP~dqP~~~~~~~~~fl~~~~~ 142 (155)
.+.|.|.|| ||.+|=++.-++.++.-.|.|+
T Consensus 257 QvMVEGPGH-VPl~~I~~nv~lqK~lc~~APf 287 (420)
T PF01964_consen 257 QVMVEGPGH-VPLNQIEANVKLQKRLCHGAPF 287 (420)
T ss_dssp -EEEEE-SB---GGGHHHHHHHHHHHTTT--E
T ss_pred eEEeeCCCC-CCHHHHHHHHHHHHHhcCCCCc
Confidence 688999999 5899999999999988877543
No 129
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=20.15 E-value=88 Score=24.38 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=24.9
Q ss_pred CceEEEEecCCCccCchhhHHHHHhccc
Q 031655 51 GVKLLVYAGEYDLICNWLGNSRWVHAME 78 (155)
Q Consensus 51 ~irVLiY~Gd~D~i~n~~g~~~~i~~l~ 78 (155)
.++++.++|+.|.++|....+...+.|.
T Consensus 144 ~~~i~~~Hg~~d~~vp~~~g~~s~~~l~ 171 (206)
T KOG2112|consen 144 YTPILLCHGTADPLVPFRFGEKSAQFLK 171 (206)
T ss_pred cchhheecccCCceeehHHHHHHHHHHH
Confidence 4679999999999999999998888775
Done!