Query 031657
Match_columns 155
No_of_seqs 116 out of 1221
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:34:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031657.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031657hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 98.7 4.8E-08 1E-12 89.8 7.8 115 7-123 777-908 (1153)
2 PLN03210 Resistant to P. syrin 98.6 7.8E-08 1.7E-12 88.4 7.8 65 2-68 651-715 (1153)
3 PLN00113 leucine-rich repeat r 97.7 7.9E-05 1.7E-09 67.3 6.8 37 82-118 234-270 (968)
4 PLN00113 leucine-rich repeat r 97.7 0.00013 2.8E-09 66.0 7.2 62 55-119 186-247 (968)
5 PRK15386 type III secretion pr 97.6 0.00012 2.5E-09 60.7 4.9 100 6-121 50-169 (426)
6 PF13855 LRR_8: Leucine rich r 97.3 0.00071 1.5E-08 40.7 5.1 18 8-26 1-18 (61)
7 PF13855 LRR_8: Leucine rich r 97.2 0.00087 1.9E-08 40.3 4.6 59 57-119 1-60 (61)
8 KOG0617 Ras suppressor protein 96.9 0.00012 2.7E-09 54.2 -1.3 106 4-118 52-183 (264)
9 PRK15386 type III secretion pr 96.8 0.0044 9.6E-08 51.5 7.0 101 6-118 69-187 (426)
10 KOG0617 Ras suppressor protein 96.5 0.00088 1.9E-08 49.8 0.4 111 2-119 27-161 (264)
11 PF14580 LRR_9: Leucine-rich r 96.4 0.0014 3E-08 48.4 1.1 84 53-145 60-145 (175)
12 PF12799 LRR_4: Leucine Rich r 95.5 0.013 2.9E-07 33.1 2.4 35 84-119 1-35 (44)
13 KOG0444 Cytoskeletal regulator 95.2 0.0014 3E-08 57.2 -3.5 35 82-117 220-254 (1255)
14 KOG0618 Serine/threonine phosp 95.1 0.0032 7E-08 56.6 -1.5 84 2-116 377-460 (1081)
15 KOG4658 Apoptotic ATPase [Sign 95.1 0.01 2.2E-07 53.8 1.6 111 4-119 567-679 (889)
16 PLN03150 hypothetical protein; 94.9 0.047 1E-06 47.7 5.2 15 4-18 438-452 (623)
17 KOG0472 Leucine-rich repeat pr 94.4 0.0032 6.9E-08 52.2 -3.2 110 1-119 198-308 (565)
18 KOG3864 Uncharacterized conser 94.3 0.0047 1E-07 46.6 -2.2 66 55-121 123-189 (221)
19 KOG3665 ZYG-1-like serine/thre 94.2 0.009 2E-07 52.9 -0.9 57 55-116 146-203 (699)
20 PRK15387 E3 ubiquitin-protein 93.8 0.16 3.4E-06 45.7 6.0 31 83-117 301-331 (788)
21 KOG3207 Beta-tubulin folding c 93.8 0.0097 2.1E-07 49.6 -1.4 37 82-119 244-282 (505)
22 PLN03150 hypothetical protein; 93.6 0.12 2.5E-06 45.3 4.8 64 53-119 438-501 (623)
23 PF14580 LRR_9: Leucine-rich r 93.2 0.082 1.8E-06 38.9 2.7 108 4-119 37-151 (175)
24 PF12799 LRR_4: Leucine Rich r 93.1 0.13 2.7E-06 29.0 2.9 39 57-100 1-39 (44)
25 PRK15370 E3 ubiquitin-protein 93.0 0.17 3.7E-06 45.4 4.9 54 57-119 325-378 (754)
26 KOG3864 Uncharacterized conser 93.0 0.0098 2.1E-07 44.9 -2.4 70 4-98 121-190 (221)
27 KOG4658 Apoptotic ATPase [Sign 92.9 0.099 2.2E-06 47.6 3.3 88 6-118 768-856 (889)
28 PF13504 LRR_7: Leucine rich r 92.1 0.11 2.3E-06 23.3 1.3 16 85-101 2-17 (17)
29 KOG3665 ZYG-1-like serine/thre 92.0 0.061 1.3E-06 47.7 0.8 12 6-17 146-157 (699)
30 PRK15370 E3 ubiquitin-protein 92.0 0.4 8.7E-06 43.0 5.9 17 9-26 200-216 (754)
31 KOG0472 Leucine-rich repeat pr 91.8 0.035 7.5E-07 46.3 -0.8 62 53-118 224-285 (565)
32 KOG4341 F-box protein containi 91.7 0.13 2.9E-06 42.8 2.4 127 6-145 318-457 (483)
33 KOG0444 Cytoskeletal regulator 91.3 0.033 7.1E-07 49.0 -1.6 42 82-124 337-378 (1255)
34 PF00560 LRR_1: Leucine Rich R 89.2 0.25 5.5E-06 23.4 1.3 18 9-27 1-18 (22)
35 cd00116 LRR_RI Leucine-rich re 89.1 0.064 1.4E-06 41.9 -1.5 36 83-119 192-232 (319)
36 KOG4194 Membrane glycoprotein 87.7 0.62 1.3E-05 40.9 3.4 58 83-146 268-326 (873)
37 cd00116 LRR_RI Leucine-rich re 87.2 0.12 2.6E-06 40.4 -1.1 36 83-119 164-204 (319)
38 PRK15387 E3 ubiquitin-protein 87.0 0.73 1.6E-05 41.6 3.6 55 57-119 402-456 (788)
39 KOG1947 Leucine rich repeat pr 86.1 0.1 2.2E-06 42.9 -2.0 66 55-121 241-308 (482)
40 KOG4194 Membrane glycoprotein 84.7 0.13 2.7E-06 45.0 -2.1 14 4-17 217-230 (873)
41 KOG2120 SCF ubiquitin ligase, 84.7 0.14 3.1E-06 41.2 -1.7 63 55-119 311-374 (419)
42 KOG4237 Extracellular matrix p 84.2 0.048 1E-06 45.2 -4.7 23 4-27 87-109 (498)
43 KOG3207 Beta-tubulin folding c 82.0 0.81 1.8E-05 38.5 1.6 13 6-18 195-207 (505)
44 KOG1644 U2-associated snRNP A' 78.3 4.8 0.0001 30.8 4.5 87 3-119 59-151 (233)
45 smart00367 LRR_CC Leucine-rich 76.4 1.7 3.7E-05 21.3 1.2 16 8-23 2-17 (26)
46 KOG4237 Extracellular matrix p 76.2 2 4.3E-05 36.0 2.1 84 4-116 270-354 (498)
47 KOG0532 Leucine-rich repeat (L 74.2 0.28 6E-06 42.6 -3.3 35 85-119 210-245 (722)
48 smart00369 LRR_TYP Leucine-ric 73.0 2.6 5.6E-05 20.4 1.3 21 7-28 1-21 (26)
49 smart00370 LRR Leucine-rich re 73.0 2.6 5.6E-05 20.4 1.3 21 7-28 1-21 (26)
50 KOG1644 U2-associated snRNP A' 71.5 7.8 0.00017 29.7 4.1 63 53-119 60-124 (233)
51 KOG0618 Serine/threonine phosp 71.3 0.78 1.7E-05 42.0 -1.4 86 4-96 403-488 (1081)
52 KOG0532 Leucine-rich repeat (L 69.2 0.79 1.7E-05 40.0 -1.7 54 60-118 214-270 (722)
53 KOG2120 SCF ubiquitin ligase, 67.5 3 6.4E-05 33.9 1.3 40 53-95 334-374 (419)
54 KOG4341 F-box protein containi 67.5 0.25 5.4E-06 41.3 -4.9 42 56-99 189-231 (483)
55 PF13306 LRR_5: Leucine rich r 63.1 41 0.00088 22.2 6.6 81 4-116 8-89 (129)
56 COG4886 Leucine-rich repeat (L 62.3 2.7 5.9E-05 34.1 0.2 20 83-103 185-204 (394)
57 KOG2982 Uncharacterized conser 62.0 2.4 5.2E-05 34.4 -0.2 15 4-18 93-107 (418)
58 KOG1947 Leucine rich repeat pr 49.0 7 0.00015 32.0 0.5 41 56-97 268-308 (482)
59 PF13516 LRR_6: Leucine Rich r 47.1 14 0.0003 17.3 1.2 13 7-19 1-13 (24)
60 KOG2739 Leucine-rich acidic nu 41.7 22 0.00047 28.0 2.2 61 55-120 63-128 (260)
61 COG4886 Leucine-rich repeat (L 40.6 9.7 0.00021 30.9 0.1 35 82-117 161-195 (394)
62 KOG4579 Leucine-rich repeat (L 28.5 10 0.00022 27.5 -1.4 44 55-103 75-118 (177)
63 KOG0531 Protein phosphatase 1, 27.6 42 0.00091 27.7 1.9 35 83-118 161-196 (414)
64 KOG2123 Uncharacterized conser 25.3 11 0.00023 30.5 -1.9 18 4-21 84-101 (388)
65 smart00364 LRR_BAC Leucine-ric 25.3 50 0.0011 16.4 1.2 17 85-102 3-19 (26)
66 KOG1259 Nischarin, modulator o 22.7 38 0.00083 27.8 0.7 56 56-117 283-338 (490)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.69 E-value=4.8e-08 Score=89.80 Aligned_cols=115 Identities=18% Similarity=0.244 Sum_probs=79.8
Q ss_pred CCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCC--------
Q 031657 7 LPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKE-------- 78 (155)
Q Consensus 7 L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~-------- 78 (155)
.++|++|.+++|+.+..+|..+.....+..+.+.+|..+..++.. ..+++|+.|.+++|.+++.++....
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls 854 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG--INLESLESLDLSGCSRLRTFPDISTNISDLNLS 854 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC--CCccccCEEECCCCCccccccccccccCEeECC
Confidence 356777777777766666665554445556666666666655532 2566777777777666554431100
Q ss_pred ---------ccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCcchhh
Q 031657 79 ---------DITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVEE 123 (155)
Q Consensus 79 ---------~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~~l~~ 123 (155)
....+++|+.|.+.+|++|+.+|..+..++.|+.+.+++|++|..
T Consensus 855 ~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 855 RTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred CCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 012688999999999999999999888899999999999997764
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.64 E-value=7.8e-08 Score=88.43 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=35.1
Q ss_pred CCCCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcc
Q 031657 2 PPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIML 68 (155)
Q Consensus 2 p~l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 68 (155)
|.++.+++|++|.+.+|..+..++..+.....+..+.+.+|..+.+.+.. ..+++|+.|.+.+|.
T Consensus 651 p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 651 PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLSGCS 715 (1153)
T ss_pred CccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCCCCC
Confidence 44566677777777777766666655443344444555555555544431 134444444444443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.73 E-value=7.9e-05 Score=67.33 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=16.4
Q ss_pred cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657 82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV 118 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c 118 (155)
.+++|+.|.+..|.-...+|..+.++++|+.|.++++
T Consensus 234 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence 3444555555444322234444444444555544443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.67 E-value=0.00013 Score=65.98 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=35.5
Q ss_pred CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
.+++|++|++.++.-...++...+ .+++|+.|.+..+.-...+|..+.++++|+.|++++|.
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELG---QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHc---CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 344555555544432222332222 56677777777764444667766677788888777664
No 5
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.56 E-value=0.00012 Score=60.72 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=64.4
Q ss_pred CCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCc
Q 031657 6 KLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQ 85 (155)
Q Consensus 6 ~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~ 85 (155)
.+.++++|.|++| .++.+|. + . ..+..+.+.+|.++++.+.. -.++|+.|.+.+|.++..++. +
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~-L-P-~sLtsL~Lsnc~nLtsLP~~---LP~nLe~L~Ls~Cs~L~sLP~---------s 113 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV-L-P-NELTEITIENCNNLTTLPGS---IPEGLEKLTVCHCPEISGLPE---------S 113 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC-C-C-CCCcEEEccCCCCcccCCch---hhhhhhheEccCccccccccc---------c
Confidence 3578889999988 7888862 2 2 24566778888888777632 236889999998887776553 2
Q ss_pred ccEEeec--CCccCcCCCcCCCC------------------CCCcCeEEEecCcch
Q 031657 86 VKSLSIF--FCEKLKSLPDQLLR------------------STTLESLEIADVPIV 121 (155)
Q Consensus 86 L~~L~i~--~C~~L~~lp~~~~~------------------l~~L~~L~i~~c~~l 121 (155)
|+.|.+. .|..+..+|.++.. .++|+.|.|.+|..+
T Consensus 114 Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence 3333332 23344555543322 257888999888744
No 6
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.31 E-value=0.00071 Score=40.74 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=9.3
Q ss_pred CCCceeeecccccceeeCc
Q 031657 8 PSLEILRIEEMVSVKMVGD 26 (155)
Q Consensus 8 ~~L~~L~i~~~~~l~~l~~ 26 (155)
|+|++|.+.++ ++..++.
T Consensus 1 p~L~~L~l~~n-~l~~i~~ 18 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPP 18 (61)
T ss_dssp TTESEEEETSS-TESEECT
T ss_pred CcCcEEECCCC-CCCccCH
Confidence 35555555555 4555543
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.21 E-value=0.00087 Score=40.33 Aligned_cols=59 Identities=25% Similarity=0.366 Sum_probs=45.9
Q ss_pred CCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCc-CCCCCCCcCeEEEecCc
Q 031657 57 PKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPD-QLLRSTTLESLEIADVP 119 (155)
Q Consensus 57 ~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~ 119 (155)
|+|++|+++++ ++..++.+.- ..+++|+.|.+..+ +++.++. .+.++++|+.|.++++.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f--~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSF--SNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTT--TTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHH--cCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57889999887 7888875432 26899999999965 6888776 45779999999998764
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.92 E-value=0.00012 Score=54.23 Aligned_cols=106 Identities=22% Similarity=0.227 Sum_probs=61.1
Q ss_pred CCCCCCCceeeecccccceeeCcccccCcccccccccCc--cccCCCCCCcccCCCCcceeeccCc--------------
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGT--FSSSSSSSSSVVAFPKLEKLDLGIM-------------- 67 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~f~~L~~L~l~~~-------------- 67 (155)
+..|.+|+.|++++. +++.+|..+.... .+++-+. ..+..++. ++++||.|+.|++..-
T Consensus 52 ia~l~nlevln~~nn-qie~lp~~issl~---klr~lnvgmnrl~~lpr-gfgs~p~levldltynnl~e~~lpgnff~m 126 (264)
T KOG0617|consen 52 IAELKNLEVLNLSNN-QIEELPTSISSLP---KLRILNVGMNRLNILPR-GFGSFPALEVLDLTYNNLNENSLPGNFFYM 126 (264)
T ss_pred HHHhhhhhhhhcccc-hhhhcChhhhhch---hhhheecchhhhhcCcc-ccCCCchhhhhhccccccccccCCcchhHH
Confidence 667777777777754 5676665443221 1111111 12222222 2678888888877431
Q ss_pred ----------ccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657 68 ----------LQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV 118 (155)
Q Consensus 68 ----------~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c 118 (155)
...|.++.+.+ .++.|+.|.+.+- .|-++|..+..++.|++|+|.+-
T Consensus 127 ~tlralyl~dndfe~lp~dvg---~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 127 TTLRALYLGDNDFEILPPDVG---KLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred HHHHHHHhcCCCcccCChhhh---hhcceeEEeeccC-chhhCcHHHHHHHHHHHHhcccc
Confidence 11222233333 6777777777774 57778887777888888888763
No 9
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.83 E-value=0.0044 Score=51.52 Aligned_cols=101 Identities=18% Similarity=0.263 Sum_probs=60.2
Q ss_pred CCC-CCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccC--cccCcccccCCCcc--
Q 031657 6 KLP-SLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGI--MLQLEEWDFGKEDI-- 80 (155)
Q Consensus 6 ~L~-~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~--~~~L~~~~~~~~~~-- 80 (155)
.+| +|++|.|.+|.++..++..+ . ..+..+.+.+|..+..++. +|+.|.+.+ +..+..+|.+....
T Consensus 69 ~LP~sLtsL~Lsnc~nLtsLP~~L-P-~nLe~L~Ls~Cs~L~sLP~-------sLe~L~L~~n~~~~L~~LPssLk~L~I 139 (426)
T PRK15386 69 VLPNELTEITIENCNNLTTLPGSI-P-EGLEKLTVCHCPEISGLPE-------SVRSLEIKGSATDSIKNVPNGLTSLSI 139 (426)
T ss_pred CCCCCCcEEEccCCCCcccCCchh-h-hhhhheEccCccccccccc-------ccceEEeCCCCCcccccCcchHhheec
Confidence 444 69999999999998887543 2 2345667777766665542 355554432 22333333211110
Q ss_pred ------------ccC-CcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657 81 ------------TIM-PQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV 118 (155)
Q Consensus 81 ------------~~~-p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c 118 (155)
..+ ++|+.|.+..|..+ .+|..+. .+|+.|.++.+
T Consensus 140 ~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 140 NSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 023 48999999999755 3555433 57777777654
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.46 E-value=0.00088 Score=49.78 Aligned_cols=111 Identities=19% Similarity=0.306 Sum_probs=63.7
Q ss_pred CCCCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccc
Q 031657 2 PPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDIT 81 (155)
Q Consensus 2 p~l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~ 81 (155)
|.|-.+.+.+.|.+++. .+..+++.+-....+..++..+. -+..++. ++..+|+|+.|.+. |..|..++.+.|
T Consensus 27 ~gLf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nn-qie~lp~-~issl~klr~lnvg-mnrl~~lprgfg--- 99 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNN-QIEELPT-SISSLPKLRILNVG-MNRLNILPRGFG--- 99 (264)
T ss_pred ccccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccc-hhhhcCh-hhhhchhhhheecc-hhhhhcCccccC---
Confidence 34556667777888765 45555543321111111111111 1112221 25678888888873 677777777766
Q ss_pred cCCcccEEeecCCc------------------------cCcCCCcCCCCCCCcCeEEEecCc
Q 031657 82 IMPQVKSLSIFFCE------------------------KLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 82 ~~p~L~~L~i~~C~------------------------~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
+||.|+.|.+..-. ..+.+|..+.++++|+.|.+.+-.
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc
Confidence 78888877665421 233356777778888888887654
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.38 E-value=0.0014 Score=48.37 Aligned_cols=84 Identities=20% Similarity=0.313 Sum_probs=31.3
Q ss_pred ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCc--CCCCCCCcCeEEEecCcchhhhhccCCC
Q 031657 53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPD--QLLRSTTLESLEIADVPIVEENFKKDTG 130 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~--~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 130 (155)
...+++|+.|.+.+ ..+..+.... ...+|+|+.|.+.+. ++..+-+ .+..++.|+.|.+.+.|--. ...
T Consensus 60 l~~L~~L~~L~L~~-N~I~~i~~~l--~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-----~~~ 130 (175)
T PF14580_consen 60 LPGLPRLKTLDLSN-NRISSISEGL--DKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCE-----KKN 130 (175)
T ss_dssp ----TT--EEE--S-S---S-CHHH--HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG-----STT
T ss_pred ccChhhhhhcccCC-CCCCccccch--HHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccc-----hhh
Confidence 34577888887765 2343332111 015899999998764 5655433 34458889999998877311 111
Q ss_pred CCcCcccccCeeEec
Q 031657 131 KDWSKISHIPNILIS 145 (155)
Q Consensus 131 ~~w~~i~~i~~i~~~ 145 (155)
..-..|.++|++++-
T Consensus 131 YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 131 YRLFVIYKLPSLKVL 145 (175)
T ss_dssp HHHHHHHH-TT-SEE
T ss_pred HHHHHHHHcChhhee
Confidence 122446667776554
No 12
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.53 E-value=0.013 Score=33.13 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=21.9
Q ss_pred CcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 84 PQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 84 p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
+.|+.|.+.++ +++.+|..+.++++|+.|++++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC
Confidence 35666777665 566666656667777777777654
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=95.19 E-value=0.0014 Score=57.20 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=21.6
Q ss_pred cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEec
Q 031657 82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIAD 117 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~ 117 (155)
.+.+|..+.+. |.+|..+|+.+.++++|+.|.+++
T Consensus 220 ~l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 220 DLHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred hhhhhhhcccc-ccCCCcchHHHhhhhhhheeccCc
Confidence 45555555543 346666777766677777776665
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.13 E-value=0.0032 Score=56.58 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=42.8
Q ss_pred CCCCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccc
Q 031657 2 PPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDIT 81 (155)
Q Consensus 2 p~l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~ 81 (155)
|.|-.+++|+.|+++.. .+..+|... ...|+.|++|.++| .+|+.++....
T Consensus 377 p~l~~~~hLKVLhLsyN-rL~~fpas~------------------------~~kle~LeeL~LSG-NkL~~Lp~tva--- 427 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYN-RLNSFPASK------------------------LRKLEELEELNLSG-NKLTTLPDTVA--- 427 (1081)
T ss_pred hhhccccceeeeeeccc-ccccCCHHH------------------------HhchHHhHHHhccc-chhhhhhHHHH---
Confidence 55677888888888764 355554432 22456666666655 33444443322
Q ss_pred cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEe
Q 031657 82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIA 116 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~ 116 (155)
.+++|++|+.+. ..|..+|+-. .++.|+.++++
T Consensus 428 ~~~~L~tL~ahs-N~l~~fPe~~-~l~qL~~lDlS 460 (1081)
T KOG0618|consen 428 NLGRLHTLRAHS-NQLLSFPELA-QLPQLKVLDLS 460 (1081)
T ss_pred hhhhhHHHhhcC-Cceeechhhh-hcCcceEEecc
Confidence 344444444333 1344444222 24444444443
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.12 E-value=0.01 Score=53.83 Aligned_cols=111 Identities=19% Similarity=0.099 Sum_probs=57.2
Q ss_pred CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM 83 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~ 83 (155)
|..+|.|+.|.+++|.++..+|..+...-.+.-+++ ..+.+..+|. +...|.+|.+|.+.....++.++.... .+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L-~~t~I~~LP~-~l~~Lk~L~~Lnl~~~~~l~~~~~i~~---~L 641 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL-SDTGISHLPS-GLGNLKKLIYLNLEVTGRLESIPGILL---EL 641 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc-cCCCccccch-HHHHHHhhheeccccccccccccchhh---hc
Confidence 567888899999888888888765432111110000 0112222222 144556666666666666665532221 36
Q ss_pred CcccEEeecCCc-cC-cCCCcCCCCCCCcCeEEEecCc
Q 031657 84 PQVKSLSIFFCE-KL-KSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 84 p~L~~L~i~~C~-~L-~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
++|+.|.+-.-. .. ...-..+.++.+|+.+.+..+.
T Consensus 642 ~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 642 QSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred ccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 777777664321 11 1112233456666666665544
No 16
>PLN03150 hypothetical protein; Provisional
Probab=94.95 E-value=0.047 Score=47.75 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=7.5
Q ss_pred CCCCCCCceeeeccc
Q 031657 4 LGKLPSLEILRIEEM 18 (155)
Q Consensus 4 l~~L~~L~~L~i~~~ 18 (155)
+++|++|+.|.++++
T Consensus 438 i~~L~~L~~L~Ls~N 452 (623)
T PLN03150 438 ISKLRHLQSINLSGN 452 (623)
T ss_pred HhCCCCCCEEECCCC
Confidence 344555555555544
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.38 E-value=0.0032 Score=52.22 Aligned_cols=110 Identities=25% Similarity=0.318 Sum_probs=68.8
Q ss_pred CCC-CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCc
Q 031657 1 MPP-LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKED 79 (155)
Q Consensus 1 Lp~-l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~ 79 (155)
+|+ ++-|.+|+.|++.+. .++.+| +|.+......+++.. ..+.-.+-.-..++++|..|++++ .+++++|.+.-
T Consensus 198 lP~~lg~l~~L~~LyL~~N-ki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~c- 272 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRN-KIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEIC- 272 (565)
T ss_pred CChhhcchhhhHHHHhhhc-ccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccc-cccccCchHHH-
Confidence 355 777888888888765 466665 443322222221111 001111111133678888888876 56788876654
Q ss_pred cccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 80 ITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 80 ~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
.+.+|+.|++.+- .+.++|-.+.++ .|+.|.+.+-|
T Consensus 273 --lLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 273 --LLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred --HhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence 5778888888874 688899888878 88888888877
No 18
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.29 E-value=0.0047 Score=46.61 Aligned_cols=66 Identities=20% Similarity=0.413 Sum_probs=51.6
Q ss_pred CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCC-cCCCCCCCcCeEEEecCcch
Q 031657 55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLP-DQLLRSTTLESLEIADVPIV 121 (155)
Q Consensus 55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp-~~~~~l~~L~~L~i~~c~~l 121 (155)
.+++++.|.+.+|..+..|..+.-. +.+++|+.|.|..|+++++-- .++.++++|+.|.+++.+.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 5678888999999999888744321 168999999999999988533 24557899999999998844
No 19
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.23 E-value=0.009 Score=52.87 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=26.0
Q ss_pred CCCCcceeeccCcccCc-ccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEe
Q 031657 55 AFPKLEKLDLGIMLQLE-EWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIA 116 (155)
Q Consensus 55 ~f~~L~~L~l~~~~~L~-~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~ 116 (155)
-||+|++|.+.+..--. ++..-.. .||+|..|+|.++ +++.+ .|+.++.+|+.|.+.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~---sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCA---SFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMR 203 (699)
T ss_pred hCcccceEEecCceecchhHHHHhh---ccCccceeecCCC-CccCc-HHHhccccHHHHhcc
Confidence 46777777665532111 1111111 5666666666655 34433 333334444444333
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=93.83 E-value=0.16 Score=45.72 Aligned_cols=31 Identities=29% Similarity=0.289 Sum_probs=15.3
Q ss_pred CCcccEEeecCCccCcCCCcCCCCCCCcCeEEEec
Q 031657 83 MPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIAD 117 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~ 117 (155)
+++|+.|.+.++ +++.+|.. ..+|+.|.+++
T Consensus 301 p~~L~~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~ 331 (788)
T PRK15387 301 PPGLQELSVSDN-QLASLPAL---PSELCKLWAYN 331 (788)
T ss_pred ccccceeECCCC-ccccCCCC---ccccccccccc
Confidence 345666666554 45555542 23444444444
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.0097 Score=49.61 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=23.9
Q ss_pred cCCcccEEeecCCccCcCCC--cCCCCCCCcCeEEEecCc
Q 031657 82 IMPQVKSLSIFFCEKLKSLP--DQLLRSTTLESLEIADVP 119 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp--~~~~~l~~L~~L~i~~c~ 119 (155)
.+..|+.|.+.+-+ +..++ ....+++.|..|.+++|.
T Consensus 244 i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 244 ILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTG 282 (505)
T ss_pred hhhHHhhccccCCc-ccccccccccccccchhhhhccccC
Confidence 56677777777754 33333 234468888888887765
No 22
>PLN03150 hypothetical protein; Provisional
Probab=93.64 E-value=0.12 Score=45.33 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=44.4
Q ss_pred ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
+..+++|+.|.+.+..--..++...+ .+++|+.|.+..+.--..+|..+.++++|+.|+++++.
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~~---~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSLG---SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHHh---CCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 45678888888877543334554443 68888888888874333677777778888888887754
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=93.19 E-value=0.082 Score=38.95 Aligned_cols=108 Identities=21% Similarity=0.269 Sum_probs=37.5
Q ss_pred CC-CCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccC--cccCcccccCCCcc
Q 031657 4 LG-KLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGI--MLQLEEWDFGKEDI 80 (155)
Q Consensus 4 l~-~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~--~~~L~~~~~~~~~~ 80 (155)
++ .|.+|+.|+++++ .++.+. .+.....+..+.+++ ..+++....-...||+|++|.+.+ ..++..+.. .
T Consensus 37 L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~----L 109 (175)
T PF14580_consen 37 LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSNNKISDLNELEP----L 109 (175)
T ss_dssp --TT-TT--EEE-TTS---S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--EEE-TTS---SCCCCGG----G
T ss_pred hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCEEECcCCcCCChHHhHH----H
Confidence 44 5778888888876 355552 121111111221111 112222110012589999999865 233333321 2
Q ss_pred ccCCcccEEeecCCccCcCCCc----CCCCCCCcCeEEEecCc
Q 031657 81 TIMPQVKSLSIFFCEKLKSLPD----QLLRSTTLESLEIADVP 119 (155)
Q Consensus 81 ~~~p~L~~L~i~~C~~L~~lp~----~~~~l~~L~~L~i~~c~ 119 (155)
..+|+|+.|.+.+.|= ...+. -+.++|+|+.|+-....
T Consensus 110 ~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 110 SSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp GG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred HcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEEcc
Confidence 2699999999998773 32232 12347788877655443
No 24
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.12 E-value=0.13 Score=29.02 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=26.1
Q ss_pred CCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCC
Q 031657 57 PKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSL 100 (155)
Q Consensus 57 ~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~l 100 (155)
++|++|++.+. +++.++.... .++.|+.|.+.++ .++.+
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~---~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELS---NLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGT---TCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCC-CCcccCchHh---CCCCCCEEEecCC-CCCCC
Confidence 46888888774 5666665333 7899999999887 45544
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=93.02 E-value=0.17 Score=45.35 Aligned_cols=54 Identities=22% Similarity=0.426 Sum_probs=30.7
Q ss_pred CCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 57 PKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 57 ~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
++|+.|.+.++ .+..++.. ..++|+.|.+.++ ++..+|..+ .+.|+.|++++|.
T Consensus 325 ~sL~~L~Ls~N-~Lt~LP~~-----l~~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 325 PGLKTLEAGEN-ALTSLPAS-----LPPELQVLDVSKN-QITVLPETL--PPTITTLDVSRNA 378 (754)
T ss_pred ccceeccccCC-ccccCChh-----hcCcccEEECCCC-CCCcCChhh--cCCcCEEECCCCc
Confidence 45666666554 24444321 2356777777766 466666544 3567777776654
No 26
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.01 E-value=0.0098 Score=44.89 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=46.6
Q ss_pred CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM 83 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~ 83 (155)
|+.++.++.|.+.+|..+....-+.. .+.+++|+.|++++|+.+.+.-... ...|
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l-----------------------~~~~~~L~~L~lsgC~rIT~~GL~~--L~~l 175 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERL-----------------------GGLAPSLQDLDLSGCPRITDGGLAC--LLKL 175 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHh-----------------------cccccchheeeccCCCeechhHHHH--HHHh
Confidence 56677777777777765544332222 2258999999999999887643221 2268
Q ss_pred CcccEEeecCCccCc
Q 031657 84 PQVKSLSIFFCEKLK 98 (155)
Q Consensus 84 p~L~~L~i~~C~~L~ 98 (155)
++|+.|.+.+.+...
T Consensus 176 knLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 176 KNLRRLHLYDLPYVA 190 (221)
T ss_pred hhhHHHHhcCchhhh
Confidence 888888887776543
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.90 E-value=0.099 Score=47.63 Aligned_cols=88 Identities=20% Similarity=0.184 Sum_probs=56.6
Q ss_pred CCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCccee-eccCcccCcccccCCCccccCC
Q 031657 6 KLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKL-DLGIMLQLEEWDFGKEDITIMP 84 (155)
Q Consensus 6 ~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L-~l~~~~~L~~~~~~~~~~~~~p 84 (155)
-.|+|+.|.+..|..++.+.+.......... ....|.+++.+ .+.+.+.++.+.+..- .++
T Consensus 768 f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~---------------~i~~f~~~~~l~~~~~l~~l~~i~~~~l---~~~ 829 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLEDIIPKLKALLELKE---------------LILPFNKLEGLRMLCSLGGLPQLYWLPL---SFL 829 (889)
T ss_pred ccCcccEEEEecccccccCCCHHHHhhhccc---------------EEecccccccceeeecCCCCceeEeccc---Ccc
Confidence 3578888888888777766543322211000 13467777777 4677777777665544 677
Q ss_pred cccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657 85 QVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV 118 (155)
Q Consensus 85 ~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c 118 (155)
+|+.+.+..||++..+ |.+.++.|.+|
T Consensus 830 ~l~~~~ve~~p~l~~~-------P~~~~~~i~~~ 856 (889)
T KOG4658|consen 830 KLEELIVEECPKLGKL-------PLLSTLTIVGC 856 (889)
T ss_pred chhheehhcCcccccC-------ccccccceecc
Confidence 7999999999988864 44455666666
No 28
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.06 E-value=0.11 Score=23.29 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=6.6
Q ss_pred cccEEeecCCccCcCCC
Q 031657 85 QVKSLSIFFCEKLKSLP 101 (155)
Q Consensus 85 ~L~~L~i~~C~~L~~lp 101 (155)
+|+.|++.+|. |+.+|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 45555555554 55443
No 29
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=92.02 E-value=0.061 Score=47.74 Aligned_cols=12 Identities=50% Similarity=0.567 Sum_probs=8.1
Q ss_pred CCCCCceeeecc
Q 031657 6 KLPSLEILRIEE 17 (155)
Q Consensus 6 ~L~~L~~L~i~~ 17 (155)
.||+|+.|.|.+
T Consensus 146 ~LPsL~sL~i~~ 157 (699)
T KOG3665|consen 146 MLPSLRSLVISG 157 (699)
T ss_pred hCcccceEEecC
Confidence 567777777765
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=91.97 E-value=0.4 Score=43.04 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=8.8
Q ss_pred CCceeeecccccceeeCc
Q 031657 9 SLEILRIEEMVSVKMVGD 26 (155)
Q Consensus 9 ~L~~L~i~~~~~l~~l~~ 26 (155)
+|+.|.+.++ ++..++.
T Consensus 200 ~L~~L~Ls~N-~LtsLP~ 216 (754)
T PRK15370 200 QITTLILDNN-ELKSLPE 216 (754)
T ss_pred CCcEEEecCC-CCCcCCh
Confidence 4556666544 4555544
No 31
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.84 E-value=0.035 Score=46.27 Aligned_cols=62 Identities=23% Similarity=0.267 Sum_probs=39.0
Q ss_pred ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657 53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV 118 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c 118 (155)
+.+...|++|++.. ..++.++.+.. ..++++..|++++- +++++|.++.-+.+|..|++++-
T Consensus 224 f~gcs~L~Elh~g~-N~i~~lpae~~--~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 224 FPGCSLLKELHVGE-NQIEMLPAEHL--KHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNN 285 (565)
T ss_pred CCccHHHHHHHhcc-cHHHhhHHHHh--cccccceeeecccc-ccccCchHHHHhhhhhhhcccCC
Confidence 34445555555532 33444444433 15778888888774 78888887777777888877753
No 32
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=91.66 E-value=0.13 Score=42.83 Aligned_cols=127 Identities=17% Similarity=0.192 Sum_probs=75.4
Q ss_pred CCCCCceeeecccccceeeCcccccCc--ccccccccCccc-----cCCCCCCcccCCCCcceeeccCcccCccc-----
Q 031657 6 KLPSLEILRIEEMVSVKMVGDEFLGIG--ICDHNHIHGTFS-----SSSSSSSSVVAFPKLEKLDLGIMLQLEEW----- 73 (155)
Q Consensus 6 ~L~~L~~L~i~~~~~l~~l~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~f~~L~~L~l~~~~~L~~~----- 73 (155)
+-++|+.|.+.+|..+...+....+.+ .+..+.+-.|+- +.++ ..+.+.|+.|.+++|.....-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl----s~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL----SRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh----ccCCchhccCChhhhhhhhhhhhhhh
Confidence 457788888888876554433222211 111112222211 2222 336788999999887765432
Q ss_pred ccCCCccccCCcccEEeecCCccCcC-CCcCCCCCCCcCeEEEecCcchhhhhccCCCCCcCcccccCeeEec
Q 031657 74 DFGKEDITIMPQVKSLSIFFCEKLKS-LPDQLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILIS 145 (155)
Q Consensus 74 ~~~~~~~~~~p~L~~L~i~~C~~L~~-lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~i~~~ 145 (155)
.... ..+..|+.+.+.+||.+.. .-+...+.++|+.+++.+|....+.--. +..+|.|+|++.
T Consensus 394 ~~~~---c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~------~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 394 SSSS---CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS------RFATHLPNIKVH 457 (483)
T ss_pred hhcc---ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH------HHHhhCccceeh
Confidence 2211 2577899999999998753 4445556789999999999865433211 235678877664
No 33
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=91.26 E-value=0.033 Score=48.99 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=33.4
Q ss_pred cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCcchhhh
Q 031657 82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVEEN 124 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~~l~~~ 124 (155)
..++|++|.+. |..|-.+|+++.-++.|+.|++.+-|+|..-
T Consensus 337 RC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 337 RCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred hhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCccCC
Confidence 56677777764 4578889999988999999999998887654
No 34
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=89.22 E-value=0.25 Score=23.39 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=15.1
Q ss_pred CCceeeecccccceeeCcc
Q 031657 9 SLEILRIEEMVSVKMVGDE 27 (155)
Q Consensus 9 ~L~~L~i~~~~~l~~l~~~ 27 (155)
+|++|.|++| .+..+|++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp TESEEEETSS-EESEEGTT
T ss_pred CccEEECCCC-cCEeCChh
Confidence 5899999999 78888765
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=89.07 E-value=0.064 Score=41.92 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=21.2
Q ss_pred CCcccEEeecCCccCc-----CCCcCCCCCCCcCeEEEecCc
Q 031657 83 MPQVKSLSIFFCEKLK-----SLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~-----~lp~~~~~l~~L~~L~i~~c~ 119 (155)
++.|+.|.+.+|. +. .+...+.++++|+.|.+++|+
T Consensus 192 ~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 192 NCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred CCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 3467777776663 32 223334456777777777765
No 36
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=87.71 E-value=0.62 Score=40.86 Aligned_cols=58 Identities=17% Similarity=0.309 Sum_probs=27.6
Q ss_pred CCcccEEeecCCccCcCCCc-CCCCCCCcCeEEEecCcchhhhhccCCCCCcCcccccCeeEecc
Q 031657 83 MPQVKSLSIFFCEKLKSLPD-QLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISR 146 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~i~~~~ 146 (155)
+.+++.|++..- ++..+-+ ++..+++|+.|+++.- . +.+-....|...+.+..+....
T Consensus 268 l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~N-a----I~rih~d~WsftqkL~~LdLs~ 326 (873)
T KOG4194|consen 268 LEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYN-A----IQRIHIDSWSFTQKLKELDLSS 326 (873)
T ss_pred ecccceeecccc-hhhhhhcccccccchhhhhccchh-h----hheeecchhhhcccceeEeccc
Confidence 334444444432 3444433 3445777777776642 1 1111233466666655554433
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=87.19 E-value=0.12 Score=40.39 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=21.9
Q ss_pred CCcccEEeecCCccCc-----CCCcCCCCCCCcCeEEEecCc
Q 031657 83 MPQVKSLSIFFCEKLK-----SLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~-----~lp~~~~~l~~L~~L~i~~c~ 119 (155)
++.|+.|.+..|. +. .++..+...++|++|.+++|.
T Consensus 164 ~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 164 NRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred CCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 4567777777663 33 233333345688888888775
No 38
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=87.00 E-value=0.73 Score=41.60 Aligned_cols=55 Identities=20% Similarity=0.360 Sum_probs=35.7
Q ss_pred CCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 57 PKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 57 ~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
++|+.|++++. .+..++. .+..|+.|.+.++ +++.+|..+.++++|..|.+++.+
T Consensus 402 s~L~~LdLS~N-~LssIP~------l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 402 SELKELMVSGN-RLTSLPM------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cCCCEEEccCC-cCCCCCc------chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 34555555543 2433331 2335667777664 578888888789999999998876
No 39
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=86.14 E-value=0.1 Score=42.94 Aligned_cols=66 Identities=21% Similarity=0.278 Sum_probs=32.4
Q ss_pred CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcC--CCcCCCCCCCcCeEEEecCcch
Q 031657 55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKS--LPDQLLRSTTLESLEIADVPIV 121 (155)
Q Consensus 55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~--lp~~~~~l~~L~~L~i~~c~~l 121 (155)
..++|+.|.+..+..+...-...- ....++|+.|.+..|+.++. +-.....++.|++|.++.|..+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l-~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSAL-ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHH-HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 345566666655554332211100 00255667766666665432 2222234566777777766654
No 40
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=84.72 E-value=0.13 Score=44.98 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=8.7
Q ss_pred CCCCCCCceeeecc
Q 031657 4 LGKLPSLEILRIEE 17 (155)
Q Consensus 4 l~~L~~L~~L~i~~ 17 (155)
+.+||.|+.|.+..
T Consensus 217 Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 217 FKRLPKLESLDLNR 230 (873)
T ss_pred hhhcchhhhhhccc
Confidence 45666777666643
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.65 E-value=0.14 Score=41.23 Aligned_cols=63 Identities=21% Similarity=0.202 Sum_probs=45.6
Q ss_pred CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCc-CCCcCCCCCCCcCeEEEecCc
Q 031657 55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLK-SLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~-~lp~~~~~l~~L~~L~i~~c~ 119 (155)
..|.|..|+++++..|+.=.+.. ...|+.|++|.+..|..+. ..--.+...|+|..|++.+|-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~--~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQE--FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hCCceeeeccccccccCchHHHH--HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 57899999999988887521111 1269999999999997653 111233457999999999985
No 42
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=84.17 E-value=0.048 Score=45.23 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=17.4
Q ss_pred CCCCCCCceeeecccccceeeCcc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDE 27 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~ 27 (155)
++.|++|+.|.+++. .++.|.++
T Consensus 87 F~~l~~LRrLdLS~N-~Is~I~p~ 109 (498)
T KOG4237|consen 87 FKTLHRLRRLDLSKN-NISFIAPD 109 (498)
T ss_pred ccchhhhceeccccc-chhhcChH
Confidence 788899999999875 56666543
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=81.95 E-value=0.81 Score=38.53 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=8.3
Q ss_pred CCCCCceeeeccc
Q 031657 6 KLPSLEILRIEEM 18 (155)
Q Consensus 6 ~L~~L~~L~i~~~ 18 (155)
-+++|+.|.+.+|
T Consensus 195 ~l~~lK~L~l~~C 207 (505)
T KOG3207|consen 195 LLSHLKQLVLNSC 207 (505)
T ss_pred hhhhhheEEeccC
Confidence 3566667766666
No 44
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=78.25 E-value=4.8 Score=30.75 Aligned_cols=87 Identities=20% Similarity=0.309 Sum_probs=48.7
Q ss_pred CCCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccC--cccCcccccCCCcc
Q 031657 3 PLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGI--MLQLEEWDFGKEDI 80 (155)
Q Consensus 3 ~l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~--~~~L~~~~~~~~~~ 80 (155)
.|..++.|..|.+.+. .+..+.+.. ...+|+|+.|.+.+ +.+|..+..-
T Consensus 59 ~lp~l~rL~tLll~nN-rIt~I~p~L------------------------~~~~p~l~~L~LtnNsi~~l~dl~pL---- 109 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNN-RITRIDPDL------------------------DTFLPNLKTLILTNNSIQELGDLDPL---- 109 (233)
T ss_pred cCCCccccceEEecCC-cceeeccch------------------------hhhccccceEEecCcchhhhhhcchh----
Confidence 3556666666666643 355554322 22577788887755 3333333221
Q ss_pred ccCCcccEEeecCCccCcCCCc----CCCCCCCcCeEEEecCc
Q 031657 81 TIMPQVKSLSIFFCEKLKSLPD----QLLRSTTLESLEIADVP 119 (155)
Q Consensus 81 ~~~p~L~~L~i~~C~~L~~lp~----~~~~l~~L~~L~i~~c~ 119 (155)
..+|+|+.|.+.+-| .+.... .+..+|+|+.|+..+-.
T Consensus 110 a~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 257788887776654 222211 13358888888877654
No 45
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=76.36 E-value=1.7 Score=21.25 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=13.2
Q ss_pred CCCceeeeccccccee
Q 031657 8 PSLEILRIEEMVSVKM 23 (155)
Q Consensus 8 ~~L~~L~i~~~~~l~~ 23 (155)
++|++|.|++|+.+..
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 6899999999986653
No 46
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=76.16 E-value=2 Score=35.97 Aligned_cols=84 Identities=21% Similarity=0.288 Sum_probs=49.0
Q ss_pred CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM 83 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~ 83 (155)
+..||+|+.|++++. .+..+.+.+ +.+...+++|.+.+ .+++.+...+- +.+
T Consensus 270 f~~L~~L~~lnlsnN-~i~~i~~~a------------------------Fe~~a~l~eL~L~~-N~l~~v~~~~f--~~l 321 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN-KITRIEDGA------------------------FEGAAELQELYLTR-NKLEFVSSGMF--QGL 321 (498)
T ss_pred HhhcccceEeccCCC-ccchhhhhh------------------------hcchhhhhhhhcCc-chHHHHHHHhh--hcc
Confidence 578899999999875 455554332 22445566666643 23444433221 246
Q ss_pred CcccEEeecCCccCcCC-CcCCCCCCCcCeEEEe
Q 031657 84 PQVKSLSIFFCEKLKSL-PDQLLRSTTLESLEIA 116 (155)
Q Consensus 84 p~L~~L~i~~C~~L~~l-p~~~~~l~~L~~L~i~ 116 (155)
..|+.|.+.+- +++.+ |....++.+|.+|.+-
T Consensus 322 s~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 322 SGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred ccceeeeecCC-eeEEEecccccccceeeeeehc
Confidence 67777777764 45543 4456667777777663
No 47
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=74.22 E-value=0.28 Score=42.62 Aligned_cols=35 Identities=23% Similarity=0.539 Sum_probs=27.3
Q ss_pred cccEEee-cCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 85 QVKSLSI-FFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 85 ~L~~L~i-~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
.|.-+.+ ..|.++..+|..+.++..|++|.+.+-|
T Consensus 210 ~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 210 SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred CCceeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 3443444 3678899999999999999999998766
No 48
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=72.95 E-value=2.6 Score=20.39 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=16.3
Q ss_pred CCCCceeeecccccceeeCccc
Q 031657 7 LPSLEILRIEEMVSVKMVGDEF 28 (155)
Q Consensus 7 L~~L~~L~i~~~~~l~~l~~~~ 28 (155)
|++|++|.+.++ .++.++.+.
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 578999999877 688876543
No 49
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=72.95 E-value=2.6 Score=20.39 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=16.3
Q ss_pred CCCCceeeecccccceeeCccc
Q 031657 7 LPSLEILRIEEMVSVKMVGDEF 28 (155)
Q Consensus 7 L~~L~~L~i~~~~~l~~l~~~~ 28 (155)
|++|++|.+.++ .++.++.+.
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 578999999877 688876543
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=71.51 E-value=7.8 Score=29.66 Aligned_cols=63 Identities=25% Similarity=0.367 Sum_probs=35.4
Q ss_pred ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCc--CCCCCCCcCeEEEecCc
Q 031657 53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPD--QLLRSTTLESLEIADVP 119 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~--~~~~l~~L~~L~i~~c~ 119 (155)
..+++.|..|.+.+ ..+.++....+ ..+|.|+.|.+.+- ++..+-+ .+..++.|+.|.+-+-|
T Consensus 60 lp~l~rL~tLll~n-NrIt~I~p~L~--~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNN-NRITRIDPDLD--TFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred CCCccccceEEecC-Ccceeeccchh--hhccccceEEecCc-chhhhhhcchhccCCccceeeecCCc
Confidence 33667777777754 34555543332 26888888888763 3333321 22235666666665543
No 51
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=71.34 E-value=0.78 Score=41.97 Aligned_cols=86 Identities=23% Similarity=0.249 Sum_probs=45.3
Q ss_pred CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM 83 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~ 83 (155)
+.+|+.|++|++++. .+..++.........-+++.. -..+.+.| ....++.|+.++++ |.+|.++...... ..
T Consensus 403 ~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ah-sN~l~~fP--e~~~l~qL~~lDlS-~N~L~~~~l~~~~--p~ 475 (1081)
T KOG0618|consen 403 LRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAH-SNQLLSFP--ELAQLPQLKVLDLS-CNNLSEVTLPEAL--PS 475 (1081)
T ss_pred HhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhc-CCceeech--hhhhcCcceEEecc-cchhhhhhhhhhC--CC
Confidence 678999999999986 577776544322211111111 11222333 24456666666663 4555554433320 23
Q ss_pred CcccEEeecCCcc
Q 031657 84 PQVKSLSIFFCEK 96 (155)
Q Consensus 84 p~L~~L~i~~C~~ 96 (155)
|.|+.|++..-.+
T Consensus 476 p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 476 PNLKYLDLSGNTR 488 (1081)
T ss_pred cccceeeccCCcc
Confidence 5666666655544
No 52
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=69.21 E-value=0.79 Score=39.95 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=35.5
Q ss_pred ceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCC---CCCCCcCeEEEecC
Q 031657 60 EKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQL---LRSTTLESLEIADV 118 (155)
Q Consensus 60 ~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~---~~l~~L~~L~i~~c 118 (155)
..|+++ |.++..+|.+.- .|..|+.|.+++-| |.+-|..+ ...+-.+.|.+.-|
T Consensus 214 i~lDfS-cNkis~iPv~fr---~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 214 IRLDFS-CNKISYLPVDFR---KMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeecc-cCceeecchhhh---hhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 334442 566666666543 57788888877754 88877643 24667788888887
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=67.52 E-value=3 Score=33.90 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=29.6
Q ss_pred ccCCCCcceeeccCcccCcc-cccCCCccccCCcccEEeecCCc
Q 031657 53 VVAFPKLEKLDLGIMLQLEE-WDFGKEDITIMPQVKSLSIFFCE 95 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~-~~~~~~~~~~~p~L~~L~i~~C~ 95 (155)
+-.|+.|++|.++.|..+-- -..+.+ ..|+|..|.+..|-
T Consensus 334 ~~kf~~L~~lSlsRCY~i~p~~~~~l~---s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 334 FFKFNYLQHLSLSRCYDIIPETLLELN---SKPSLVYLDVFGCV 374 (419)
T ss_pred HHhcchheeeehhhhcCCChHHeeeec---cCcceEEEEecccc
Confidence 44689999999999987642 112222 79999999998874
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=67.47 E-value=0.25 Score=41.31 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=21.7
Q ss_pred CCCcceeeccCcccCcccccC-CCccccCCcccEEeecCCccCcC
Q 031657 56 FPKLEKLDLGIMLQLEEWDFG-KEDITIMPQVKSLSIFFCEKLKS 99 (155)
Q Consensus 56 f~~L~~L~l~~~~~L~~~~~~-~~~~~~~p~L~~L~i~~C~~L~~ 99 (155)
.++|+.+.+..|+++...... .. ..+++|+.|.+..|+.+..
T Consensus 189 C~~l~~l~L~~c~~iT~~~Lk~la--~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 189 CRKLRHLNLHSCSSITDVSLKYLA--EGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred cchhhhhhhcccchhHHHHHHHHH--HhhhhHHHhhhccCchhhc
Confidence 455566666555555543311 00 0366666666666665554
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=63.12 E-value=41 Score=22.16 Aligned_cols=81 Identities=17% Similarity=0.263 Sum_probs=33.3
Q ss_pred CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM 83 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~ 83 (155)
+....+|+.+.+.+ .++.++... ....++|+.+.+.+ +++.+....- ...
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~------------------------F~~~~~l~~i~~~~--~~~~i~~~~F--~~~ 57 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENA------------------------FSNCTSLKSINFPN--NLTSIGDNAF--SNC 57 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTT------------------------TTT-TT-SEEEESS--TTSCE-TTTT--TT-
T ss_pred HhCCCCCCEEEECC--CeeEeChhh------------------------cccccccccccccc--cccccceeee--ecc
Confidence 45556777777753 456665432 22445566666654 3444432221 134
Q ss_pred CcccEEeecCCccCcCCCcC-CCCCCCcCeEEEe
Q 031657 84 PQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIA 116 (155)
Q Consensus 84 p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~ 116 (155)
++++.+.+.+ .+..++.. ..+.++|+.+.+.
T Consensus 58 ~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 58 KSLESITFPN--NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TT-EEEEETS--TT-EE-TTTTTT-TTECEEEET
T ss_pred cccccccccc--cccccccccccccccccccccC
Confidence 4566666643 34444433 2235666666663
No 56
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=62.29 E-value=2.7 Score=34.11 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=9.1
Q ss_pred CCcccEEeecCCccCcCCCcC
Q 031657 83 MPQVKSLSIFFCEKLKSLPDQ 103 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~~ 103 (155)
.+.|+.|.+.+. ++..+|..
T Consensus 185 ~~~L~~L~ls~N-~i~~l~~~ 204 (394)
T COG4886 185 LSNLNNLDLSGN-KISDLPPE 204 (394)
T ss_pred hhhhhheeccCC-ccccCchh
Confidence 444444554443 34444443
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.98 E-value=2.4 Score=34.40 Aligned_cols=15 Identities=33% Similarity=0.507 Sum_probs=12.8
Q ss_pred CCCCCCCceeeeccc
Q 031657 4 LGKLPSLEILRIEEM 18 (155)
Q Consensus 4 l~~L~~L~~L~i~~~ 18 (155)
+.+||.|+.|+|+..
T Consensus 93 le~lP~l~~LNls~N 107 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCN 107 (418)
T ss_pred HhcCccceEeeccCC
Confidence 679999999999844
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=49.03 E-value=7 Score=32.05 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=24.3
Q ss_pred CCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccC
Q 031657 56 FPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKL 97 (155)
Q Consensus 56 f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L 97 (155)
.++|+.|.+.+|..+..-..... ....+.|+.|.+..|..+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i-~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSI-AERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHH-HHhcCcccEEeeecCccc
Confidence 56777777777776432111000 114677888888877765
No 59
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=47.07 E-value=14 Score=17.33 Aligned_cols=13 Identities=31% Similarity=0.422 Sum_probs=8.2
Q ss_pred CCCCceeeecccc
Q 031657 7 LPSLEILRIEEMV 19 (155)
Q Consensus 7 L~~L~~L~i~~~~ 19 (155)
+++|++|.|++|.
T Consensus 1 ~~~L~~L~l~~n~ 13 (24)
T PF13516_consen 1 NPNLETLDLSNNQ 13 (24)
T ss_dssp -TT-SEEE-TSSB
T ss_pred CCCCCEEEccCCc
Confidence 4689999998874
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=41.73 E-value=22 Score=27.97 Aligned_cols=61 Identities=28% Similarity=0.334 Sum_probs=32.4
Q ss_pred CCCCcceeeccCc--ccCcccccCCCccccCCcccEEeecCCccCc---CCCcCCCCCCCcCeEEEecCcc
Q 031657 55 AFPKLEKLDLGIM--LQLEEWDFGKEDITIMPQVKSLSIFFCEKLK---SLPDQLLRSTTLESLEIADVPI 120 (155)
Q Consensus 55 ~f~~L~~L~l~~~--~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~---~lp~~~~~l~~L~~L~i~~c~~ 120 (155)
.+|+|+.|.++.- .---.+..-.. ..|+|+++.+..- +++ .++. ...+.+|..|...+|+.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e---~~P~l~~l~ls~N-ki~~lstl~p-l~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAE---KAPNLKVLNLSGN-KIKDLSTLRP-LKELENLKSLDLFNCSV 128 (260)
T ss_pred CcchhhhhcccCCcccccccceehhh---hCCceeEEeecCC-ccccccccch-hhhhcchhhhhcccCCc
Confidence 4567777776542 10111111111 3588888877653 333 3322 23467788888888873
No 61
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=40.62 E-value=9.7 Score=30.89 Aligned_cols=35 Identities=29% Similarity=0.554 Sum_probs=20.1
Q ss_pred cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEec
Q 031657 82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIAD 117 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~ 117 (155)
.++.|+.|.+.++ ++..+|......+.|+.|.+++
T Consensus 161 ~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 161 NLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred ccccccccccCCc-hhhhhhhhhhhhhhhhheeccC
Confidence 5666666666665 4555555543356666665554
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=28.46 E-value=10 Score=27.51 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=23.4
Q ss_pred CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcC
Q 031657 55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQ 103 (155)
Q Consensus 55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~ 103 (155)
.||.+..|.+.+ .++.++|.+.. .+|+|+.|.+.+-+ +...|.-
T Consensus 75 kf~t~t~lNl~~-neisdvPeE~A---am~aLr~lNl~~N~-l~~~p~v 118 (177)
T KOG4579|consen 75 KFPTATTLNLAN-NEISDVPEELA---AMPALRSLNLRFNP-LNAEPRV 118 (177)
T ss_pred ccchhhhhhcch-hhhhhchHHHh---hhHHhhhcccccCc-cccchHH
Confidence 345555554433 23445554433 67777777776653 4444433
No 63
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=27.63 E-value=42 Score=27.70 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=16.2
Q ss_pred CCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecC
Q 031657 83 MPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADV 118 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c 118 (155)
++.|+.+.+.++. +..+... ...+..++.+++.+.
T Consensus 161 l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 161 LKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred chhhhcccCCcch-hhhhhhhhhhhccchHHHhccCC
Confidence 5555555555542 2222221 233556665555543
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.29 E-value=11 Score=30.54 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=12.1
Q ss_pred CCCCCCCceeeecccccc
Q 031657 4 LGKLPSLEILRIEEMVSV 21 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l 21 (155)
|.+||+|+.|+|...+..
T Consensus 84 LknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCC 101 (388)
T ss_pred HhcCchhhhHhhccCCcc
Confidence 557777777777766543
No 65
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=25.26 E-value=50 Score=16.41 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=10.3
Q ss_pred cccEEeecCCccCcCCCc
Q 031657 85 QVKSLSIFFCEKLKSLPD 102 (155)
Q Consensus 85 ~L~~L~i~~C~~L~~lp~ 102 (155)
+|+.|.+.+- +|+++|+
T Consensus 3 ~L~~L~vs~N-~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNN-QLTSLPE 19 (26)
T ss_pred ccceeecCCC-ccccCcc
Confidence 4666666553 5676665
No 66
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=22.72 E-value=38 Score=27.79 Aligned_cols=56 Identities=18% Similarity=0.354 Sum_probs=28.1
Q ss_pred CCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEec
Q 031657 56 FPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIAD 117 (155)
Q Consensus 56 f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~ 117 (155)
.+.|.++++++ ..+..++..+. ..|.++.|.+... .+..+-. ++++++|+.|++++
T Consensus 283 Wq~LtelDLS~-N~I~~iDESvK---L~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~ 338 (490)
T KOG1259|consen 283 WQELTELDLSG-NLITQIDESVK---LAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSG 338 (490)
T ss_pred Hhhhhhccccc-cchhhhhhhhh---hccceeEEecccc-ceeeehh-hhhcccceEeeccc
Confidence 34555555543 22333333333 4666666666553 3333332 44566666666654
Done!