Query 031657
Match_columns 155
No_of_seqs 116 out of 1221
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 05:06:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031657hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 98.7 3.7E-08 1.3E-12 77.3 8.2 112 5-122 180-291 (328)
2 4fcg_A Uncharacterized protein 98.7 6.3E-08 2.2E-12 76.0 7.7 132 4-146 146-286 (328)
3 3rfs_A Internalin B, repeat mo 98.4 4E-06 1.4E-10 63.7 12.1 15 4-18 59-73 (272)
4 4ezg_A Putative uncharacterize 98.4 9.4E-07 3.2E-11 64.1 8.2 136 2-151 60-195 (197)
5 3rfs_A Internalin B, repeat mo 98.4 7.2E-06 2.5E-10 62.3 12.7 111 3-119 80-192 (272)
6 2xwt_C Thyrotropin receptor; s 98.4 1.5E-06 5E-11 64.7 8.2 22 4-25 51-72 (239)
7 2o6q_A Variable lymphocyte rec 98.3 1.3E-05 4.4E-10 60.7 13.0 23 4-27 57-79 (270)
8 1ozn_A Reticulon 4 receptor; N 98.3 8.5E-06 2.9E-10 62.0 11.8 62 4-66 52-114 (285)
9 1ozn_A Reticulon 4 receptor; N 98.3 9.7E-06 3.3E-10 61.6 11.9 21 53-73 76-96 (285)
10 3m19_A Variable lymphocyte rec 98.3 2.2E-05 7.5E-10 58.8 13.7 110 4-119 55-166 (251)
11 3zyj_A Leucine-rich repeat-con 98.3 1.1E-05 3.7E-10 65.3 12.2 108 4-117 108-216 (440)
12 3zyi_A Leucine-rich repeat-con 98.3 9.7E-06 3.3E-10 65.8 11.5 109 4-118 119-228 (452)
13 2xwt_C Thyrotropin receptor; s 98.2 4.2E-06 1.4E-10 62.2 7.8 140 4-153 76-221 (239)
14 4fmz_A Internalin; leucine ric 98.2 9E-06 3.1E-10 63.3 9.4 106 3-119 61-166 (347)
15 4ezg_A Putative uncharacterize 98.2 2.8E-06 9.4E-11 61.6 6.1 109 3-119 83-192 (197)
16 4eco_A Uncharacterized protein 98.2 1.2E-06 4.1E-11 74.5 4.7 113 4-119 202-341 (636)
17 3e6j_A Variable lymphocyte rec 98.2 1.7E-05 5.8E-10 58.9 10.1 109 4-119 60-170 (229)
18 3rgz_A Protein brassinosteroid 98.2 1.6E-06 5.5E-11 75.1 5.1 134 4-142 628-765 (768)
19 2ell_A Acidic leucine-rich nuc 98.1 2E-06 6.8E-11 60.6 4.3 105 6-119 22-131 (168)
20 4b8c_D Glucose-repressible alc 98.1 9E-06 3.1E-10 70.4 8.9 108 4-119 220-327 (727)
21 2z63_A TOLL-like receptor 4, v 98.1 1.2E-05 4.2E-10 66.3 9.4 64 82-151 468-532 (570)
22 4g8a_A TOLL-like receptor 4; l 98.1 1.3E-05 4.4E-10 66.6 9.4 62 53-118 96-158 (635)
23 3e6j_A Variable lymphocyte rec 98.1 6.2E-05 2.1E-09 55.8 12.1 107 7-119 39-146 (229)
24 3zyj_A Leucine-rich repeat-con 98.1 3.8E-05 1.3E-09 62.0 11.8 111 4-119 84-196 (440)
25 3zyi_A Leucine-rich repeat-con 98.1 3.9E-05 1.3E-09 62.2 11.5 111 4-119 95-207 (452)
26 3v47_A TOLL-like receptor 5B a 98.1 2.3E-05 7.8E-10 63.1 10.0 109 4-119 295-406 (455)
27 3m19_A Variable lymphocyte rec 98.1 4.1E-05 1.4E-09 57.3 10.5 110 4-119 79-190 (251)
28 1h6u_A Internalin H; cell adhe 98.1 1.7E-05 5.9E-10 61.4 8.6 15 4-18 59-73 (308)
29 2z66_A Variable lymphocyte rec 98.0 2.5E-05 8.6E-10 59.9 9.3 15 4-18 48-62 (306)
30 2ell_A Acidic leucine-rich nuc 98.0 1.4E-05 4.8E-10 56.1 7.2 108 4-119 45-158 (168)
31 2z80_A TOLL-like receptor 2, v 98.0 1.3E-05 4.6E-10 62.8 7.8 36 83-118 148-184 (353)
32 2o6s_A Variable lymphocyte rec 98.0 0.00022 7.5E-09 51.6 13.5 34 83-117 99-133 (208)
33 2o6s_A Variable lymphocyte rec 98.0 6.4E-05 2.2E-09 54.5 10.5 110 4-119 48-159 (208)
34 3vq2_A TLR4, TOLL-like recepto 98.0 2.3E-05 7.9E-10 65.4 9.0 36 82-118 471-507 (606)
35 1m9s_A Internalin B; cell inva 98.0 3.6E-05 1.2E-09 65.4 10.2 35 82-118 151-185 (605)
36 3rgz_A Protein brassinosteroid 98.0 1.1E-05 3.6E-10 70.0 7.0 64 53-119 486-549 (768)
37 3t6q_A CD180 antigen; protein- 98.0 6.5E-05 2.2E-09 62.7 11.4 26 4-30 274-299 (606)
38 1p9a_G Platelet glycoprotein I 98.0 4.9E-05 1.7E-09 58.4 9.8 35 82-117 170-204 (290)
39 4ecn_A Leucine-rich repeat pro 98.0 5.4E-06 1.8E-10 73.4 4.8 113 4-119 444-584 (876)
40 1p9a_G Platelet glycoprotein I 98.0 7.9E-05 2.7E-09 57.3 10.9 110 4-119 73-183 (290)
41 2id5_A Lingo-1, leucine rich r 98.0 6.8E-05 2.3E-09 60.9 10.9 108 4-118 52-162 (477)
42 2o6q_A Variable lymphocyte rec 98.0 0.0001 3.5E-09 55.7 11.1 23 4-27 81-103 (270)
43 2v9t_B SLIT homolog 2 protein 98.0 0.00011 3.7E-09 54.2 11.0 110 4-119 52-163 (220)
44 2ast_B S-phase kinase-associat 97.9 8.8E-07 3E-11 68.7 -0.7 38 82-119 220-258 (336)
45 3vq2_A TLR4, TOLL-like recepto 97.9 3.2E-05 1.1E-09 64.6 8.2 34 83-117 520-554 (606)
46 1xku_A Decorin; proteoglycan, 97.9 3.7E-05 1.3E-09 59.6 8.1 63 53-119 212-274 (330)
47 3bz5_A Internalin-J, INLJ; leu 97.9 8.2E-05 2.8E-09 60.8 10.5 56 54-118 103-158 (457)
48 3o6n_A APL1; leucine-rich repe 97.9 4.6E-05 1.6E-09 60.4 8.7 110 4-119 65-176 (390)
49 2v70_A SLIT-2, SLIT homolog 2 97.9 7.6E-05 2.6E-09 55.0 9.4 109 4-119 53-164 (220)
50 1h6u_A Internalin H; cell adhe 97.9 6E-05 2E-09 58.3 9.2 20 4-24 81-100 (308)
51 1h6t_A Internalin B; cell adhe 97.9 3.9E-05 1.3E-09 59.0 7.9 35 82-118 154-188 (291)
52 2ifg_A High affinity nerve gro 97.9 7E-05 2.4E-09 58.4 9.5 90 2-119 25-114 (347)
53 2id5_A Lingo-1, leucine rich r 97.9 4.2E-05 1.4E-09 62.2 8.3 37 82-118 198-234 (477)
54 2je0_A Acidic leucine-rich nuc 97.9 6E-06 2.1E-10 56.9 2.8 105 6-119 15-124 (149)
55 3oja_B Anopheles plasmodium-re 97.9 4.4E-05 1.5E-09 64.2 8.6 109 4-119 71-182 (597)
56 2z66_A Variable lymphocyte rec 97.9 0.00017 5.7E-09 55.2 11.1 35 83-118 198-233 (306)
57 4fmz_A Internalin; leucine ric 97.9 1.5E-05 5.1E-10 62.0 5.1 106 4-119 217-322 (347)
58 1xeu_A Internalin C; cellular 97.9 9.7E-05 3.3E-09 56.0 9.5 13 5-17 60-72 (263)
59 2z62_A TOLL-like receptor 4, v 97.9 7.9E-05 2.7E-09 56.3 9.0 109 4-119 48-160 (276)
60 3t6q_A CD180 antigen; protein- 97.9 0.00014 4.9E-09 60.6 11.4 37 82-119 474-511 (606)
61 1ogq_A PGIP-2, polygalacturona 97.9 3.5E-05 1.2E-09 59.7 7.1 19 4-22 72-90 (313)
62 2r9u_A Variable lymphocyte rec 97.8 0.00011 3.7E-09 52.4 8.9 63 53-119 53-116 (174)
63 2z80_A TOLL-like receptor 2, v 97.8 5.2E-05 1.8E-09 59.3 7.9 64 53-119 145-209 (353)
64 2z63_A TOLL-like receptor 4, v 97.8 7.6E-05 2.6E-09 61.6 9.2 110 4-119 417-529 (570)
65 2je0_A Acidic leucine-rich nuc 97.8 2.1E-05 7.3E-10 54.1 5.0 61 53-119 38-99 (149)
66 1ogq_A PGIP-2, polygalacturona 97.8 1.7E-05 6E-10 61.4 4.9 111 4-119 97-208 (313)
67 2z81_A CD282 antigen, TOLL-lik 97.8 5.2E-05 1.8E-09 62.4 7.8 37 82-118 121-158 (549)
68 3o6n_A APL1; leucine-rich repe 97.8 3.9E-05 1.3E-09 60.8 6.8 106 4-119 244-350 (390)
69 2z7x_B TOLL-like receptor 1, v 97.8 7.8E-05 2.7E-09 61.1 8.8 37 82-119 442-479 (520)
70 4eco_A Uncharacterized protein 97.8 8.8E-06 3E-10 69.1 2.6 37 82-119 351-388 (636)
71 2o6r_A Variable lymphocyte rec 97.8 0.00035 1.2E-08 49.3 10.7 108 6-119 26-135 (177)
72 4ay9_X Follicle-stimulating ho 97.8 9.8E-05 3.4E-09 58.0 8.4 101 9-117 155-255 (350)
73 3bz5_A Internalin-J, INLJ; leu 97.8 0.00038 1.3E-08 56.9 12.2 56 55-118 146-201 (457)
74 1a9n_A U2A', U2A'; complex (nu 97.8 3.7E-05 1.3E-09 54.5 5.4 107 4-119 15-124 (176)
75 1dce_A Protein (RAB geranylger 97.8 3.7E-05 1.3E-09 64.8 6.2 101 9-119 442-544 (567)
76 1h6t_A Internalin B; cell adhe 97.7 0.00011 3.7E-09 56.5 8.1 60 53-119 152-211 (291)
77 1o6v_A Internalin A; bacterial 97.7 0.00017 5.8E-09 58.6 9.7 36 82-119 329-364 (466)
78 2v9t_B SLIT homolog 2 protein 97.7 0.00048 1.7E-08 50.6 11.2 106 8-119 32-139 (220)
79 3v47_A TOLL-like receptor 5B a 97.7 0.00032 1.1E-08 56.3 10.9 13 54-66 76-88 (455)
80 1a9n_A U2A', U2A'; complex (nu 97.7 2.7E-05 9.3E-10 55.2 3.8 107 8-120 42-152 (176)
81 3e4g_A ATP synthase subunit S, 97.7 1.8E-05 6.3E-10 57.3 2.8 68 53-123 81-154 (176)
82 4ay9_X Follicle-stimulating ho 97.7 0.00013 4.6E-09 57.2 8.0 63 4-66 50-113 (350)
83 1xeu_A Internalin C; cellular 97.7 0.0002 6.8E-09 54.2 8.5 105 2-119 79-183 (263)
84 1m9s_A Internalin B; cell inva 97.7 0.00018 6.1E-09 61.1 8.9 60 53-119 149-208 (605)
85 2z62_A TOLL-like receptor 4, v 97.7 0.00049 1.7E-08 51.9 10.5 106 8-119 28-135 (276)
86 4ecn_A Leucine-rich repeat pro 97.7 4.9E-05 1.7E-09 67.3 5.5 39 4-42 485-525 (876)
87 2ft3_A Biglycan; proteoglycan, 97.7 0.00045 1.5E-08 53.5 10.6 103 8-119 54-158 (332)
88 2wfh_A SLIT homolog 2 protein 97.6 0.0005 1.7E-08 49.6 9.9 106 8-119 31-137 (193)
89 2ast_B S-phase kinase-associat 97.6 2.7E-06 9.3E-11 65.9 -2.5 16 4-19 89-104 (336)
90 1ziw_A TOLL-like receptor 3; i 97.6 0.00094 3.2E-08 56.4 12.9 62 54-119 451-515 (680)
91 3j0a_A TOLL-like receptor 5; m 97.6 0.00064 2.2E-08 59.4 12.1 112 4-118 44-158 (844)
92 3a79_B TLR6, VLRB.59, TOLL-lik 97.6 0.00028 9.7E-09 58.6 9.3 58 57-119 450-508 (562)
93 2xot_A Amphoterin-induced prot 97.6 0.00035 1.2E-08 55.1 9.3 35 82-117 134-172 (361)
94 1jl5_A Outer protein YOPM; leu 97.6 0.00068 2.3E-08 55.3 11.1 58 53-119 191-248 (454)
95 3o53_A Protein LRIM1, AGAP0063 97.6 0.00014 4.7E-09 56.3 6.6 60 55-119 189-248 (317)
96 3oja_B Anopheles plasmodium-re 97.6 0.00012 4.2E-09 61.5 6.8 106 4-119 250-356 (597)
97 3a79_B TLR6, VLRB.59, TOLL-lik 97.6 0.00084 2.9E-08 55.7 11.7 35 84-119 450-484 (562)
98 2ft3_A Biglycan; proteoglycan, 97.5 0.00029 1E-08 54.6 8.1 63 53-119 213-275 (332)
99 2z81_A CD282 antigen, TOLL-lik 97.5 0.00026 9E-09 58.2 7.9 63 53-117 119-181 (549)
100 1w8a_A SLIT protein; signaling 97.5 0.0003 1E-08 50.6 7.3 105 9-119 30-137 (192)
101 1o6v_A Internalin A; bacterial 97.5 0.00022 7.6E-09 57.9 7.3 59 54-119 328-386 (466)
102 3g39_A Variable lymphocyte rec 97.5 0.00049 1.7E-08 48.6 8.2 63 53-119 50-113 (170)
103 3j0a_A TOLL-like receptor 5; m 97.5 0.00062 2.1E-08 59.5 10.4 106 7-118 23-133 (844)
104 1ziw_A TOLL-like receptor 3; i 97.4 0.00044 1.5E-08 58.5 8.5 61 53-118 93-155 (680)
105 4g8a_A TOLL-like receptor 4; l 97.4 0.00059 2E-08 56.6 9.0 109 4-117 465-576 (635)
106 1xku_A Decorin; proteoglycan, 97.4 0.0018 6.1E-08 50.0 10.6 37 82-119 214-251 (330)
107 2xot_A Amphoterin-induced prot 97.4 0.0025 8.7E-08 50.1 11.5 105 9-119 40-147 (361)
108 3oja_A Leucine-rich immune mol 97.4 0.0003 1E-08 57.9 6.3 60 55-119 189-248 (487)
109 2z7x_B TOLL-like receptor 1, v 97.4 0.00045 1.5E-08 56.6 7.3 103 8-119 21-126 (520)
110 1wwl_A Monocyte differentiatio 97.4 0.00032 1.1E-08 54.1 6.1 14 5-18 118-131 (312)
111 2v70_A SLIT-2, SLIT homolog 2 97.4 0.0031 1E-07 46.2 11.1 105 9-119 33-140 (220)
112 1dce_A Protein (RAB geranylger 97.3 0.00062 2.1E-08 57.3 8.2 91 53-153 459-549 (567)
113 2o6r_A Variable lymphocyte rec 97.3 0.0042 1.4E-07 43.6 11.3 129 10-151 9-138 (177)
114 3o53_A Protein LRIM1, AGAP0063 97.1 0.00049 1.7E-08 53.1 4.7 35 83-118 190-224 (317)
115 3e4g_A ATP synthase subunit S, 97.1 5E-05 1.7E-09 55.0 -1.0 88 9-99 62-154 (176)
116 1w8a_A SLIT protein; signaling 97.1 0.0095 3.2E-07 42.6 11.0 125 11-149 11-138 (192)
117 3g06_A SSPH2 (leucine-rich rep 97.0 0.0073 2.5E-07 51.4 11.6 12 7-18 80-91 (622)
118 3g06_A SSPH2 (leucine-rich rep 97.0 0.0021 7.2E-08 54.8 7.9 56 56-119 240-295 (622)
119 1jl5_A Outer protein YOPM; leu 96.9 0.0038 1.3E-07 50.9 8.4 100 2-119 189-288 (454)
120 3oja_A Leucine-rich immune mol 96.9 0.00097 3.3E-08 54.8 4.7 35 83-118 190-224 (487)
121 1ds9_A Outer arm dynein; leuci 96.9 1.1E-05 3.7E-10 58.4 -6.4 106 4-119 44-151 (198)
122 4glp_A Monocyte differentiatio 96.8 0.0017 5.9E-08 49.8 5.1 36 83-119 223-262 (310)
123 4b8c_D Glucose-repressible alc 96.6 0.0024 8.3E-08 55.2 5.6 87 4-98 243-329 (727)
124 1wwl_A Monocyte differentiatio 96.6 0.0042 1.4E-07 47.7 6.3 108 6-119 93-212 (312)
125 3cvr_A Invasion plasmid antige 96.6 0.0066 2.2E-07 51.2 7.9 32 87-119 210-241 (571)
126 3cvr_A Invasion plasmid antige 96.5 0.015 5.1E-07 49.0 9.6 32 83-118 159-190 (571)
127 2p1m_B Transport inhibitor res 96.5 0.0021 7.3E-08 53.1 4.3 39 82-120 479-518 (594)
128 2p1m_B Transport inhibitor res 96.3 0.00065 2.2E-08 56.2 0.1 109 6-118 128-245 (594)
129 2r9u_A Variable lymphocyte rec 96.2 0.052 1.8E-06 38.2 9.5 86 56-151 32-119 (174)
130 3g39_A Variable lymphocyte rec 95.9 0.074 2.5E-06 37.1 9.4 86 56-151 29-116 (170)
131 2wfh_A SLIT homolog 2 protein 95.9 0.068 2.3E-06 38.1 9.3 124 11-148 13-137 (193)
132 4glp_A Monocyte differentiatio 95.9 0.019 6.6E-07 43.8 6.6 61 55-119 143-208 (310)
133 2ca6_A RAN GTPase-activating p 95.5 0.00057 1.9E-08 54.0 -3.6 15 4-18 28-42 (386)
134 2ifg_A High affinity nerve gro 95.3 0.028 9.5E-07 43.4 5.7 63 53-119 27-91 (347)
135 2ra8_A Uncharacterized protein 95.3 0.0024 8.3E-08 50.9 -0.5 62 54-119 249-318 (362)
136 3ogk_B Coronatine-insensitive 95.0 0.0031 1E-07 52.2 -0.7 60 55-119 461-524 (592)
137 2ca6_A RAN GTPase-activating p 94.8 0.0019 6.4E-08 51.0 -2.6 36 83-119 273-314 (386)
138 2ra8_A Uncharacterized protein 94.6 0.077 2.6E-06 42.1 6.5 14 106-119 250-263 (362)
139 3sb4_A Hypothetical leucine ri 94.5 0.23 7.8E-06 38.1 8.9 56 55-116 248-305 (329)
140 3ogk_B Coronatine-insensitive 94.3 0.0061 2.1E-07 50.4 -0.5 16 103-118 265-280 (592)
141 1z7x_W Ribonuclease inhibitor; 94.0 0.013 4.5E-07 46.8 0.8 15 4-18 109-123 (461)
142 3goz_A Leucine-rich repeat-con 93.2 0.018 6.1E-07 45.1 0.2 58 57-119 196-264 (362)
143 1z7x_W Ribonuclease inhibitor; 93.1 0.0078 2.7E-07 48.1 -2.0 63 55-119 339-409 (461)
144 3sb4_A Hypothetical leucine ri 92.4 0.65 2.2E-05 35.5 8.2 33 83-117 249-283 (329)
145 1ds9_A Outer arm dynein; leuci 92.0 0.0095 3.2E-07 42.6 -2.6 34 83-118 92-125 (198)
146 3goz_A Leucine-rich repeat-con 91.4 0.038 1.3E-06 43.2 0.1 61 57-119 80-149 (362)
147 4fdw_A Leucine rich hypothetic 90.8 1.4 4.9E-05 35.0 8.8 22 4-26 176-197 (401)
148 4fdw_A Leucine rich hypothetic 88.9 4 0.00014 32.4 10.1 22 4-27 222-243 (401)
149 3rw6_A Nuclear RNA export fact 86.0 0.43 1.5E-05 36.3 2.6 62 55-119 168-231 (267)
150 3rw6_A Nuclear RNA export fact 82.3 0.72 2.5E-05 35.0 2.5 56 54-114 193-257 (267)
151 1io0_A Tropomodulin; LRR prote 82.1 0.11 3.7E-06 36.9 -2.1 55 56-115 64-128 (185)
152 3un9_A NLR family member X1; l 81.1 0.092 3.1E-06 41.6 -3.1 60 55-119 181-250 (372)
153 4gt6_A Cell surface protein; l 58.9 59 0.002 25.0 8.8 59 55-119 309-368 (394)
154 3rfe_A Platelet glycoprotein I 57.7 9.8 0.00033 25.1 3.4 15 53-67 51-65 (130)
155 4fs7_A Uncharacterized protein 48.5 84 0.0029 24.1 7.9 57 55-117 318-375 (394)
156 2hr7_A Insulin receptor; hormo 24.7 1E+02 0.0035 25.1 4.9 41 89-138 93-138 (486)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.72 E-value=3.7e-08 Score=77.34 Aligned_cols=112 Identities=23% Similarity=0.248 Sum_probs=84.7
Q ss_pred CCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCC
Q 031657 5 GKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMP 84 (155)
Q Consensus 5 ~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p 84 (155)
+.+++|++|.++++ .+..++..+.....+..+.+.++. ++..+. ....+++|++|+++++.....++...+ .++
T Consensus 180 ~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~---~l~ 253 (328)
T 4fcg_A 180 QGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSALGP-AIHHLPKLEELDLRGCTALRNYPPIFG---GRA 253 (328)
T ss_dssp EESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTT---CCC
T ss_pred ccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CCcCch-hhccCCCCCEEECcCCcchhhhHHHhc---CCC
Confidence 35899999999987 566777665444444455555542 222222 266789999999999888888776655 789
Q ss_pred cccEEeecCCccCcCCCcCCCCCCCcCeEEEecCcchh
Q 031657 85 QVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVE 122 (155)
Q Consensus 85 ~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~~l~ 122 (155)
+|+.|.+.+|..+..+|..+.++++|+.|++++|+.+.
T Consensus 254 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 99999999999889999888889999999999988554
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.65 E-value=6.3e-08 Score=76.00 Aligned_cols=132 Identities=14% Similarity=0.183 Sum_probs=91.6
Q ss_pred CCCCCCCceeeecccccceeeCccccc---------CcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFLG---------IGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWD 74 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~ 74 (155)
+++|++|++|.+++|..+..++..+.. ...+..+.+.++ .++..+. ....+++|++|.+.++. +..++
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~-~l~~l~~L~~L~L~~N~-l~~l~ 222 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPA-SIANLQNLKSLKIRNSP-LSALG 222 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCG-GGGGCTTCCEEEEESSC-CCCCC
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchH-hhcCCCCCCEEEccCCC-CCcCc
Confidence 788999999999999888888765532 223334444443 2333332 26688999999998753 55555
Q ss_pred cCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCcchhhhhccCCCCCcCcccccCeeEecc
Q 031657 75 FGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISR 146 (155)
Q Consensus 75 ~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~i~~~~ 146 (155)
.... .+++|+.|.+.+|.....+|..+..+++|+.|.+++|..+.... ..+..+..+..+.+.+
T Consensus 223 ~~l~---~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-----~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 223 PAIH---HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-----LDIHRLTQLEKLDLRG 286 (328)
T ss_dssp GGGG---GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-----TTGGGCTTCCEEECTT
T ss_pred hhhc---cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-----hhhhcCCCCCEEeCCC
Confidence 4433 79999999999998888999988889999999999987543221 1133444555555554
No 3
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.43 E-value=4e-06 Score=63.73 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=9.0
Q ss_pred CCCCCCCceeeeccc
Q 031657 4 LGKLPSLEILRIEEM 18 (155)
Q Consensus 4 l~~L~~L~~L~i~~~ 18 (155)
++.+++|++|.++++
T Consensus 59 l~~l~~L~~L~l~~n 73 (272)
T 3rfs_A 59 IQYLPNVRYLALGGN 73 (272)
T ss_dssp GGGCTTCCEEECTTS
T ss_pred cccCCCCcEEECCCC
Confidence 455666666666654
No 4
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.42 E-value=9.4e-07 Score=64.10 Aligned_cols=136 Identities=13% Similarity=0.160 Sum_probs=67.7
Q ss_pred CCCCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccc
Q 031657 2 PPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDIT 81 (155)
Q Consensus 2 p~l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~ 81 (155)
|.++.+++|++|.++++ .+..++ .+.....+..+.+.++. ++.........+++|++|.+.++.--...+....
T Consensus 60 ~~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~--- 133 (197)
T 4ezg_A 60 TGIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN--- 133 (197)
T ss_dssp TTGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHT---
T ss_pred HHHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEEecCCccCcHhHHHHh---
Confidence 34556677777777766 343332 22222222233333321 1110011144567777777766431111121112
Q ss_pred cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCcchhhhhccCCCCCcCcccccCeeEecceeccC
Q 031657 82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISRRYEQG 151 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~i~~~~~~~~~ 151 (155)
.+++|+.|.+..|..+..+| .+.++++|+.|++++|.- .. -.....+..+..+.+.+..+++
T Consensus 134 ~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~------~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 134 TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HD------YRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CC------CTTGGGCSSCCEEEECBC----
T ss_pred hCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cC------hHHhccCCCCCEEEeeCcccCC
Confidence 57788888888876577776 455678888888877641 11 1123344555666666665554
No 5
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.39 E-value=7.2e-06 Score=62.26 Aligned_cols=111 Identities=17% Similarity=0.198 Sum_probs=62.3
Q ss_pred CCCCCCCCceeeecccccceeeCcccc-cCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccc
Q 031657 3 PLGKLPSLEILRIEEMVSVKMVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDIT 81 (155)
Q Consensus 3 ~l~~L~~L~~L~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~ 81 (155)
.++.+++|++|.++++ .+..++.... ....+..+.+.++. ++..+......+++|++|.+.++ ++..++...- .
T Consensus 80 ~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~--~ 154 (272)
T 3rfs_A 80 ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVF--D 154 (272)
T ss_dssp GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT--T
T ss_pred hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHh--c
Confidence 3677888888888876 4555554332 22233333444332 22222222456677777777765 4554443220 1
Q ss_pred cCCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657 82 IMPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP 119 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~ 119 (155)
.+++|+.|.+..| ++..++.. +.++++|+.|.++++.
T Consensus 155 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 155 KLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCc
Confidence 4677777777776 46666554 3456777777776654
No 6
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.36 E-value=1.5e-06 Score=64.71 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=11.0
Q ss_pred CCCCCCCceeeecccccceeeC
Q 031657 4 LGKLPSLEILRIEEMVSVKMVG 25 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~ 25 (155)
++.+++|++|.++++..+..++
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~ 72 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLE 72 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEEC
T ss_pred ccCCCCCcEEeCCCCCCcceeC
Confidence 4455555555555544344444
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.33 E-value=1.3e-05 Score=60.71 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=13.6
Q ss_pred CCCCCCCceeeecccccceeeCcc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDE 27 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~ 27 (155)
++.+++|++|.++++ .+..++.+
T Consensus 57 ~~~l~~L~~L~l~~n-~l~~i~~~ 79 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDN-KLQTLPAG 79 (270)
T ss_dssp SSSCTTCCEEECCSS-CCSCCCTT
T ss_pred hcCCCCCCEEECCCC-ccCeeChh
Confidence 566677777777655 34444443
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.32 E-value=8.5e-06 Score=61.99 Aligned_cols=62 Identities=15% Similarity=0.250 Sum_probs=32.1
Q ss_pred CCCCCCCceeeecccccceeeCc-ccccCcccccccccCccccCCCCCCcccCCCCcceeeccC
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGD-EFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGI 66 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~ 66 (155)
++.+++|++|.++++ .+..+.. .+.+...+..+.+.++..+..........+++|++|.+.+
T Consensus 52 ~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~ 114 (285)
T 1ozn_A 52 FRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114 (285)
T ss_dssp TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTT
T ss_pred cccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCC
Confidence 677778888888766 3555532 2322333344444444333333222344556666666554
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.31 E-value=9.7e-06 Score=61.65 Aligned_cols=21 Identities=33% Similarity=0.327 Sum_probs=10.3
Q ss_pred ccCCCCcceeeccCcccCccc
Q 031657 53 VVAFPKLEKLDLGIMLQLEEW 73 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~~ 73 (155)
...+++|++|++.+...+..+
T Consensus 76 ~~~l~~L~~L~l~~n~~l~~~ 96 (285)
T 1ozn_A 76 FTGLALLEQLDLSDNAQLRSV 96 (285)
T ss_dssp TTTCTTCCEEECCSCTTCCCC
T ss_pred cCCccCCCEEeCCCCCCcccc
Confidence 334555555555554433333
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.31 E-value=2.2e-05 Score=58.79 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=58.7
Q ss_pred CCCCCCCceeeecccccceeeCccc-ccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEF-LGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI 82 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~ 82 (155)
++.+++|++|.++++ .+..++... .....+..+.+.++ .++..+......+++|++|.+++. ++..++...- ..
T Consensus 55 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~--~~ 129 (251)
T 3m19_A 55 FRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVF--DR 129 (251)
T ss_dssp TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT--TT
T ss_pred hcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCC-cCCCcChhHh--cc
Confidence 667777777777765 344444332 22222223333322 122222222445677777777654 4444443221 14
Q ss_pred CCcccEEeecCCccCcCCCc-CCCCCCCcCeEEEecCc
Q 031657 83 MPQVKSLSIFFCEKLKSLPD-QLLRSTTLESLEIADVP 119 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~ 119 (155)
+++|+.|.+..+ +++.+|. .+..+++|+.|+++++.
T Consensus 130 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 130 LTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc
Confidence 677777777765 5666665 35566777777776653
No 11
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.28 E-value=1.1e-05 Score=65.26 Aligned_cols=108 Identities=19% Similarity=0.310 Sum_probs=48.1
Q ss_pred CCCCCCCceeeecccccceeeCcccc-cCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI 82 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~ 82 (155)
++.+++|++|.++++ .+..++.+.. ....+..+.+.++. +...+......+++|+.|++.++..+..++...- ..
T Consensus 108 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~--~~ 183 (440)
T 3zyj_A 108 FNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF--EG 183 (440)
T ss_dssp GTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT--TT
T ss_pred ccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchh--hc
Confidence 566777777777765 4555554322 22222233333221 2222222244556666666665555544442211 13
Q ss_pred CCcccEEeecCCccCcCCCcCCCCCCCcCeEEEec
Q 031657 83 MPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIAD 117 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~ 117 (155)
+++|+.|.+..+ +++.+|. +..+++|++|++++
T Consensus 184 l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 184 LSNLRYLNLAMC-NLREIPN-LTPLIKLDELDLSG 216 (440)
T ss_dssp CSSCCEEECTTS-CCSSCCC-CTTCSSCCEEECTT
T ss_pred ccccCeecCCCC-cCccccc-cCCCcccCEEECCC
Confidence 444555544444 3444432 22244444444433
No 12
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.26 E-value=9.7e-06 Score=65.80 Aligned_cols=109 Identities=23% Similarity=0.299 Sum_probs=57.0
Q ss_pred CCCCCCCceeeecccccceeeCccccc-CcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFLG-IGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI 82 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~ 82 (155)
++.+++|++|.++++ .+..++.+... ...+..+.+.++ .+...+......+++|++|++.++..++.++...- ..
T Consensus 119 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~--~~ 194 (452)
T 3zyi_A 119 FNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF--EG 194 (452)
T ss_dssp TTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT--TT
T ss_pred ccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhc--cC
Confidence 677888888888876 36666554322 222333333332 12222322345667777777777666666553211 14
Q ss_pred CCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657 83 MPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV 118 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c 118 (155)
+++|+.|.+..+ ++..+|. +..+++|++|+++++
T Consensus 195 l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 195 LFNLKYLNLGMC-NIKDMPN-LTPLVGLEELEMSGN 228 (452)
T ss_dssp CTTCCEEECTTS-CCSSCCC-CTTCTTCCEEECTTS
T ss_pred CCCCCEEECCCC-ccccccc-ccccccccEEECcCC
Confidence 556666666554 3444443 233555555555443
No 13
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.22 E-value=4.2e-06 Score=62.20 Aligned_cols=140 Identities=9% Similarity=0.050 Sum_probs=77.4
Q ss_pred CCCCCCCceeeecccccceeeCcccc-cCcccccccccCccccCCCCCCcccCCCCcc---eeeccCcccCcccccCCCc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAFPKLE---KLDLGIMLQLEEWDFGKED 79 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~---~L~l~~~~~L~~~~~~~~~ 79 (155)
++.+++|++|.+.+|..+..++.... +...+..+.+.++. ++..+. ...+++|+ +|++.+.+.++.++...-
T Consensus 76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~- 151 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAF- 151 (239)
T ss_dssp EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTT-
T ss_pred cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc--cccccccccccEEECCCCcchhhcCcccc-
Confidence 67889999999998777888875432 22233334443331 222221 33455555 777777656666654311
Q ss_pred cccCCccc-EEeecCCccCcCCCcCCCCCCCcCeEEEecCcchhhhhccCCCCCcCcc-cccCeeEecceeccCCC
Q 031657 80 ITIMPQVK-SLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVEENFKKDTGKDWSKI-SHIPNILISRRYEQGGP 153 (155)
Q Consensus 80 ~~~~p~L~-~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~w~~i-~~i~~i~~~~~~~~~~~ 153 (155)
..+++|+ .|.+..+ +++.+|......++|++|.++++..+.... ...+..+ ..+..+.+.+..+.++|
T Consensus 152 -~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~----~~~~~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 152 -QGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVID----KDAFGGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp -TTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEEC----TTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred -cchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCC----HHHhhccccCCcEEECCCCccccCC
Confidence 1466777 7777665 466666654444667777777664333221 1112334 45555666555555555
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.19 E-value=9e-06 Score=63.31 Aligned_cols=106 Identities=16% Similarity=0.140 Sum_probs=50.5
Q ss_pred CCCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657 3 PLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI 82 (155)
Q Consensus 3 ~l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~ 82 (155)
.++.+++|++|.++++ .+..++. +.....+..+.+.++ .++..+ ....+++|++|++.++. +..++. . ..
T Consensus 61 ~~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~--~~~~l~~L~~L~l~~n~-i~~~~~-~---~~ 130 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTN-KITDIS--ALQNLTNLRELYLNEDN-ISDISP-L---AN 130 (347)
T ss_dssp TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCG--GGTTCTTCSEEECTTSC-CCCCGG-G---TT
T ss_pred hhhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCC-cccCch--HHcCCCcCCEEECcCCc-ccCchh-h---cc
Confidence 3455666666666655 3444432 222222223333333 111111 24455666666665532 222222 1 14
Q ss_pred CCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 83 MPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
+++|+.|.+..|+.+..++. +..+++|+.|.+++|.
T Consensus 131 l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK 166 (347)
T ss_dssp CTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC
Confidence 66666666666665555444 3446666666666554
No 15
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.18 E-value=2.8e-06 Score=61.59 Aligned_cols=109 Identities=21% Similarity=0.213 Sum_probs=71.6
Q ss_pred CCCCCCCCceeeeccccccee-eCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccc
Q 031657 3 PLGKLPSLEILRIEEMVSVKM-VGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDIT 81 (155)
Q Consensus 3 ~l~~L~~L~~L~i~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~ 81 (155)
.++.+++|++|.++++. +.. .+..+.....+..+.+.++.-....+ .....+++|++|.++++..+..++. . .
T Consensus 83 ~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~~-l---~ 156 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDIMP-L---K 156 (197)
T ss_dssp GGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEECCSSBCBGGGH-HHHTTCSSCCEEECCSCTBCCCCGG-G---G
T ss_pred hhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEEecCCccCcHhH-HHHhhCCCCCEEEccCCCCccccHh-h---c
Confidence 47789999999998864 333 22333222233333443331111011 1245789999999999876777763 2 2
Q ss_pred cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
.+++|+.|.+..| .+..++ .+.++++|+.|++++.+
T Consensus 157 ~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 157 TLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence 7999999999998 577777 56679999999998754
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.18 E-value=1.2e-06 Score=74.51 Aligned_cols=113 Identities=11% Similarity=0.112 Sum_probs=76.8
Q ss_pred CCCCCCCceeeeccccccee------------------eCcccc--cCcccccccccCccccCCCCCCcccCCCCcceee
Q 031657 4 LGKLPSLEILRIEEMVSVKM------------------VGDEFL--GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLD 63 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~------------------l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~ 63 (155)
+++|++|++|.++++. +.. +|.++. ....+..+.+.++.-....+ .....+++|++|+
T Consensus 202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~ 279 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLIN 279 (636)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEE
T ss_pred HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEE
Confidence 7889999999999875 666 666554 44445555666664333333 2366788999999
Q ss_pred ccCcccCcc--cccCCCc---cccCCcccEEeecCCccCcCCCc--CCCCCCCcCeEEEecCc
Q 031657 64 LGIMLQLEE--WDFGKED---ITIMPQVKSLSIFFCEKLKSLPD--QLLRSTTLESLEIADVP 119 (155)
Q Consensus 64 l~~~~~L~~--~~~~~~~---~~~~p~L~~L~i~~C~~L~~lp~--~~~~l~~L~~L~i~~c~ 119 (155)
+.++..+.. ++...+. ...+++|+.|.+..+ ++..+|. .+.++++|+.|.++++.
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCC
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCc
Confidence 988765553 5543320 012388888888887 5668887 77778888888887764
No 17
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.16 E-value=1.7e-05 Score=58.86 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=60.6
Q ss_pred CCCCCCCceeeecccccceeeCcccc-cCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI 82 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~ 82 (155)
++.+++|++|.++++. +..++.+.. +...+..+.+.++ .++..+......+++|+.|.+.+. ++..++.... .
T Consensus 60 ~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~---~ 133 (229)
T 3e6j_A 60 FDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIE---R 133 (229)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGG---G
T ss_pred hhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCC-cccccCcccc---c
Confidence 5666777777776653 555543322 2222223333332 233333333446677777777653 3555554433 6
Q ss_pred CCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657 83 MPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP 119 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~ 119 (155)
+++|+.|.+.++ +++.+|.. +..+++|+.|.+.+.+
T Consensus 134 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 134 LTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 777888877775 57776643 5567778887776543
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.16 E-value=1.6e-06 Score=75.08 Aligned_cols=134 Identities=10% Similarity=-0.002 Sum_probs=58.1
Q ss_pred CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM 83 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~ 83 (155)
++.+++|++|.++++.--..+|.++.....+..++++++.=....+ .+.+.+++|++|++++..--..++.... .+
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~l~~L~~L~~LdLs~N~l~g~ip~~l~---~l 703 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP-DEVGDLRGLNILDLSSNKLDGRIPQAMS---AL 703 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEECCCGGGG---GC
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC-hHHhCCCCCCEEECCCCcccCcCChHHh---CC
Confidence 6778889999998875333455443322222223333221111111 1244566666666655432223443333 56
Q ss_pred CcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCcchh----hhhccCCCCCcCcccccCee
Q 031657 84 PQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVE----ENFKKDTGKDWSKISHIPNI 142 (155)
Q Consensus 84 p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~~l~----~~~~~~~~~~w~~i~~i~~i 142 (155)
++|+.|.+.+++---.+|...+ +..+....+.+++.+. ..|....+++|++|+|++.+
T Consensus 704 ~~L~~L~ls~N~l~g~iP~~~~-~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 704 TMLTEIDLSNNNLSGPIPEMGQ-FETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp CCCSEEECCSSEEEEECCSSSS-GGGSCGGGGCSCTEEESTTSCCCCSCC-------------
T ss_pred CCCCEEECcCCcccccCCCchh-hccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCcccc
Confidence 6666666666532223454432 4444444444443222 25677788899999999975
No 19
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.14 E-value=2e-06 Score=60.60 Aligned_cols=105 Identities=19% Similarity=0.186 Sum_probs=71.3
Q ss_pred CCCCCceeeecccccce--eeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcc-cccCCCcccc
Q 031657 6 KLPSLEILRIEEMVSVK--MVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEE-WDFGKEDITI 82 (155)
Q Consensus 6 ~L~~L~~L~i~~~~~l~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~-~~~~~~~~~~ 82 (155)
..++|++|.++++. +. .++..+.....+..+.+.++. ++.. .....+++|++|.++++. +.. ++.... .
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~---~ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNLPKLPKLKKLELSENR-IFGGLDMLAE---K 93 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESCC-CCSCCCHHHH---H
T ss_pred CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCCc-CchHHHHHHh---h
Confidence 45788999998874 54 565443333344445555543 3332 336678999999998764 333 332221 5
Q ss_pred CCcccEEeecCCccCcCCC--cCCCCCCCcCeEEEecCc
Q 031657 83 MPQVKSLSIFFCEKLKSLP--DQLLRSTTLESLEIADVP 119 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp--~~~~~l~~L~~L~i~~c~ 119 (155)
+++|+.|.+..+ +++.+| ..+.++++|+.|.+++++
T Consensus 94 l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 94 LPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp CTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred CCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 899999999998 688876 567779999999999875
No 20
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.12 E-value=9e-06 Score=70.37 Aligned_cols=108 Identities=15% Similarity=0.120 Sum_probs=81.7
Q ss_pred CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM 83 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~ 83 (155)
+..+++|+.|.++++. +..++..+.....+..+.+.++ .++..+ .++..+++|+.|+|++.. +..++...+ .+
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp-~~~~~l~~L~~L~Ls~N~-l~~lp~~~~---~l 292 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN-SLTELP-AEIKNLSNLRVLDLSHNR-LTSLPAELG---SC 292 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS-CCSCCC-GGGGGGTTCCEEECTTSC-CSSCCSSGG---GG
T ss_pred hccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC-cCcccC-hhhhCCCCCCEEeCcCCc-CCccChhhc---CC
Confidence 6788999999999875 6677766655444555555554 333444 236789999999998864 667766555 79
Q ss_pred CcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 84 PQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 84 p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
++|+.|.+.++ ++..+|..+.++++|+.|.++++.
T Consensus 293 ~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 293 FQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp TTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSC
T ss_pred CCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCc
Confidence 99999999997 789999999999999999999876
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.12 E-value=1.2e-05 Score=66.33 Aligned_cols=64 Identities=14% Similarity=0.269 Sum_probs=28.7
Q ss_pred cCCcccEEeecCCccCcCC-CcCCCCCCCcCeEEEecCcchhhhhccCCCCCcCcccccCeeEecceeccC
Q 031657 82 IMPQVKSLSIFFCEKLKSL-PDQLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISRRYEQG 151 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~l-p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~i~~~~~~~~~ 151 (155)
.+++|+.|.+..|. ++.+ |..+.++++|++|.+++|. +... ....+..+..+..+.+.+..+.+
T Consensus 468 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~----~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 468 ELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQ-LKSV----PDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSCC----CTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCc-CCCC----CHHHhhcccCCcEEEecCCcccC
Confidence 34555555555542 3332 4444455555555555542 1111 01123344455556665554443
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.11 E-value=1.3e-05 Score=66.62 Aligned_cols=62 Identities=19% Similarity=0.190 Sum_probs=32.5
Q ss_pred ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecC
Q 031657 53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADV 118 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c 118 (155)
+..+++|++|++++. +++.++.+.- ..+++|+.|.+.++ +++.+|.. +.++++|++|.++++
T Consensus 96 f~~L~~L~~L~Ls~N-~l~~l~~~~f--~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 96 YQSLSHLSTLILTGN-PIQSLALGAF--SGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN 158 (635)
T ss_dssp TTTCTTCCEEECTTC-CCCEECGGGG--TTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSS
T ss_pred hcCCCCCCEEEccCC-cCCCCCHHHh--cCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccC
Confidence 335566666666554 2444443210 14566666666665 45555542 445666666666554
No 23
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.10 E-value=6.2e-05 Score=55.80 Aligned_cols=107 Identities=19% Similarity=0.159 Sum_probs=71.7
Q ss_pred CCCCceeeecccccceeeCcc-cccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCc
Q 031657 7 LPSLEILRIEEMVSVKMVGDE-FLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQ 85 (155)
Q Consensus 7 L~~L~~L~i~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~ 85 (155)
.++|++|.++++. +..+... +.+...+..+.+.++. +...+......+++|+.|++++. ++..++...- ..+++
T Consensus 39 ~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~--~~l~~ 113 (229)
T 3e6j_A 39 PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVF--DRLVH 113 (229)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT--TTCTT
T ss_pred CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccChhHh--Ccchh
Confidence 4789999999874 5555333 3233333344444432 33333333567889999999875 5666654321 16889
Q ss_pred ccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 86 VKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 86 L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
|+.|.+..+ +++.+|..+.++++|+.|.+++..
T Consensus 114 L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 114 LKELFMCCN-KLTELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp CCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSC
T ss_pred hCeEeccCC-cccccCcccccCCCCCEEECCCCc
Confidence 999999886 688999888889999999998753
No 24
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.10 E-value=3.8e-05 Score=62.03 Aligned_cols=111 Identities=16% Similarity=0.193 Sum_probs=71.8
Q ss_pred CCCCCCCceeeecccccceeeCccc-ccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEF-LGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI 82 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~ 82 (155)
++++++|++|.++++ .+..++... .+...+..+.+.++ .++..+......+++|++|++.+.. ++.++... ...
T Consensus 84 ~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~--~~~ 158 (440)
T 3zyj_A 84 FKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYA--FNR 158 (440)
T ss_dssp TSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTT--TTT
T ss_pred hhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCc-ccccCHHH--hhh
Confidence 677888888888876 355665332 22333344444443 3344443345677888888887643 45544321 126
Q ss_pred CCcccEEeecCCccCcCCCc-CCCCCCCcCeEEEecCc
Q 031657 83 MPQVKSLSIFFCEKLKSLPD-QLLRSTTLESLEIADVP 119 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~ 119 (155)
+++|+.|.+.+|..+..++. .+..+++|+.|.++++.
T Consensus 159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 88999999998888888776 45678899999988764
No 25
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.08 E-value=3.9e-05 Score=62.22 Aligned_cols=111 Identities=17% Similarity=0.169 Sum_probs=68.1
Q ss_pred CCCCCCCceeeecccccceeeCcc-cccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDE-FLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI 82 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~ 82 (155)
++++++|++|.++++ .+..++.. +.+...+..+.+.++ .++..+......+++|++|++++.. ++.++... ...
T Consensus 95 ~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~--~~~ 169 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYA--FNR 169 (452)
T ss_dssp TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTT--TTT
T ss_pred cCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCC-cceeCHhH--Hhc
Confidence 667778888887766 45555432 222233333344333 2333333335567788888887643 45544321 126
Q ss_pred CCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657 83 MPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP 119 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~ 119 (155)
+++|+.|.+.+|..+..++.. +..+++|+.|.++++.
T Consensus 170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 888888888888888887763 5568888888888764
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.08 E-value=2.3e-05 Score=63.13 Aligned_cols=109 Identities=25% Similarity=0.300 Sum_probs=60.5
Q ss_pred CCCCCCCceeeecccccceeeCc-ccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCccc-ccCCCccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGD-EFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEW-DFGKEDIT 81 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~-~~~~~~~~ 81 (155)
++.+++|++|.++++. +..++. .+.+...+..+++.++ .++.........+++|++|+++++. +..+ +....
T Consensus 295 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~--- 368 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFL--- 368 (455)
T ss_dssp TTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSC-CCEECTTTTT---
T ss_pred cccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCc-ccccChhhcc---
Confidence 5666777777776653 444432 2222223333344333 1122211224467777777777653 3433 22222
Q ss_pred cCCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657 82 IMPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP 119 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~ 119 (155)
.+++|+.|.+.++ +++.+|.. +..+++|+.|++++++
T Consensus 369 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 369 GLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 5788888888876 57777764 3567888888887644
No 27
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.06 E-value=4.1e-05 Score=57.30 Aligned_cols=110 Identities=19% Similarity=0.235 Sum_probs=76.3
Q ss_pred CCCCCCCceeeecccccceeeCcccc-cCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI 82 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~ 82 (155)
++.+++|++|.++++ .+..++.... ....+..+.+.++ .++..+......+++|+.|.+++. ++..++... ...
T Consensus 79 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~ 153 (251)
T 3m19_A 79 FDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGA--FDK 153 (251)
T ss_dssp TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT--TTT
T ss_pred hccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHHH--cCc
Confidence 788999999999987 4666654432 2233334444443 344444333567899999999876 566666421 126
Q ss_pred CCcccEEeecCCccCcCCCc-CCCCCCCcCeEEEecCc
Q 031657 83 MPQVKSLSIFFCEKLKSLPD-QLLRSTTLESLEIADVP 119 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~ 119 (155)
+++|+.|.+..+ ++..++. .+..+++|+.|.+++.+
T Consensus 154 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 154 LTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 899999999997 6888776 56679999999998755
No 28
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.05 E-value=1.7e-05 Score=61.37 Aligned_cols=15 Identities=20% Similarity=0.189 Sum_probs=8.5
Q ss_pred CCCCCCCceeeeccc
Q 031657 4 LGKLPSLEILRIEEM 18 (155)
Q Consensus 4 l~~L~~L~~L~i~~~ 18 (155)
++.+++|++|.++++
T Consensus 59 ~~~l~~L~~L~L~~n 73 (308)
T 1h6u_A 59 VQYLNNLIGLELKDN 73 (308)
T ss_dssp GGGCTTCCEEECCSS
T ss_pred hhccCCCCEEEccCC
Confidence 445556666666554
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.05 E-value=2.5e-05 Score=59.86 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=11.1
Q ss_pred CCCCCCCceeeeccc
Q 031657 4 LGKLPSLEILRIEEM 18 (155)
Q Consensus 4 l~~L~~L~~L~i~~~ 18 (155)
++++++|++|.++++
T Consensus 48 ~~~l~~L~~L~L~~n 62 (306)
T 2z66_A 48 FDKLTQLTKLSLSSN 62 (306)
T ss_dssp TTTCTTCSEEECCSS
T ss_pred hhccccCCEEECCCC
Confidence 567777888877765
No 30
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.04 E-value=1.4e-05 Score=56.12 Aligned_cols=108 Identities=18% Similarity=0.179 Sum_probs=62.1
Q ss_pred CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccc--cCCCccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWD--FGKEDIT 81 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~--~~~~~~~ 81 (155)
++.+++|++|.+.++. +..+ ..+.....+..+++.++.-....+ .....+++|+.|.+.++ ++..++ ....
T Consensus 45 ~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~--- 117 (168)
T 2ell_A 45 TAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLD-MLAEKLPNLTHLNLSGN-KLKDISTLEPLK--- 117 (168)
T ss_dssp CGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCC-HHHHHCTTCCEEECBSS-SCCSSGGGGGGS---
T ss_pred HHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHH-HHHhhCCCCCEEeccCC-ccCcchhHHHHh---
Confidence 4677888888887764 5554 223222223333443332111111 11234778888888775 455543 1222
Q ss_pred cCCcccEEeecCCccCcCCCc----CCCCCCCcCeEEEecCc
Q 031657 82 IMPQVKSLSIFFCEKLKSLPD----QLLRSTTLESLEIADVP 119 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~----~~~~l~~L~~L~i~~c~ 119 (155)
.+++|+.|.+..+ .+..+|. .+..+++|+.|++++|.
T Consensus 118 ~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 118 KLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp SCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred cCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 5778888888776 4666665 55567888888877765
No 31
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.04 E-value=1.3e-05 Score=62.78 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=15.8
Q ss_pred CCcccEEeecCCccCcCCC-cCCCCCCCcCeEEEecC
Q 031657 83 MPQVKSLSIFFCEKLKSLP-DQLLRSTTLESLEIADV 118 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp-~~~~~l~~L~~L~i~~c 118 (155)
+++|+.|.+.++..+..++ ..+..+++|++|.++++
T Consensus 148 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred CCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 4455555554443343332 23333444444444443
No 32
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.02 E-value=0.00022 Score=51.60 Aligned_cols=34 Identities=32% Similarity=0.479 Sum_probs=15.1
Q ss_pred CCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEec
Q 031657 83 MPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIAD 117 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~ 117 (155)
+++|+.|.+..+ ++..++.. +.++++|+.|.+++
T Consensus 99 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 99 LTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred ccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCC
Confidence 444555554443 34444332 23344455554444
No 33
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.01 E-value=6.4e-05 Score=54.50 Aligned_cols=110 Identities=22% Similarity=0.283 Sum_probs=68.7
Q ss_pred CCCCCCCceeeecccccceeeCcccc-cCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI 82 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~ 82 (155)
++.+++|++|.+.++ .+..++.... ....+..+.+.++ .++..+......+++|++|++.+. ++..++... ...
T Consensus 48 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~--~~~ 122 (208)
T 2o6s_A 48 FDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGV--FDK 122 (208)
T ss_dssp TTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT--TTT
T ss_pred hcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCCC-cCcccCHhH--hcc
Confidence 567777777777765 4555544332 2222333344333 233333333456788888888764 455554332 126
Q ss_pred CCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657 83 MPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP 119 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~ 119 (155)
+++|+.|.+.++ ++..++.. +.++++|+.|++++++
T Consensus 123 l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 123 LTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence 899999999987 68888775 5679999999998853
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.00 E-value=2.3e-05 Score=65.42 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=17.6
Q ss_pred cCCcccEEeecCCccCcC-CCcCCCCCCCcCeEEEecC
Q 031657 82 IMPQVKSLSIFFCEKLKS-LPDQLLRSTTLESLEIADV 118 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~-lp~~~~~l~~L~~L~i~~c 118 (155)
.+++|+.|.+.+| ++.. .|..+.++++|++|.++++
T Consensus 471 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 471 NTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred cCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCC
Confidence 3455555555555 2332 2334444555555555554
No 35
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.00 E-value=3.6e-05 Score=65.40 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=19.3
Q ss_pred cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657 82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV 118 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c 118 (155)
.+++|+.|.+..| .+..++. +..+++|+.|.+++|
T Consensus 151 ~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 151 RLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN 185 (605)
T ss_dssp SCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS
T ss_pred ccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCC
Confidence 4555666666555 3444444 444666666666655
No 36
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.00 E-value=1.1e-05 Score=69.96 Aligned_cols=64 Identities=13% Similarity=-0.003 Sum_probs=42.7
Q ss_pred ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
...+++|++|++.++.--..++...+ .+++|+.|.+.+|.-...+|..+.++++|+.|++++++
T Consensus 486 l~~l~~L~~L~L~~N~l~~~~p~~~~---~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 486 LSNCTNLNWISLSNNRLTGEIPKWIG---RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGG---GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred HhcCCCCCEEEccCCccCCcCChHHh---cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 44566666666666553334444333 67788888888875444677777778888888887765
No 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.98 E-value=6.5e-05 Score=62.67 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=17.0
Q ss_pred CCCCCCCceeeecccccceeeCccccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFLG 30 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~~ 30 (155)
++.+++|++|.++++ .+..++..+..
T Consensus 274 ~~~l~~L~~L~l~~n-~l~~lp~~l~~ 299 (606)
T 3t6q_A 274 FHCFSGLQELDLTAT-HLSELPSGLVG 299 (606)
T ss_dssp TTTCTTCSEEECTTS-CCSCCCSSCCS
T ss_pred hccccCCCEEeccCC-ccCCCChhhcc
Confidence 667777888877766 45566655433
No 38
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.98 E-value=4.9e-05 Score=58.42 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=22.6
Q ss_pred cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEec
Q 031657 82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIAD 117 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~ 117 (155)
.+++|+.|.+.++ +++.+|.++...+.|+.|.+++
T Consensus 170 ~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 170 GLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCS
T ss_pred CcCCCCEEECCCC-cCCccChhhcccccCCeEEeCC
Confidence 3566666666665 4666666666666777777764
No 39
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.97 E-value=5.4e-06 Score=73.35 Aligned_cols=113 Identities=12% Similarity=0.189 Sum_probs=63.7
Q ss_pred CCCCCCCceeeeccccccee------------------eCcccc--cCcccccccccCccccCCCCCCcccCCCCcceee
Q 031657 4 LGKLPSLEILRIEEMVSVKM------------------VGDEFL--GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLD 63 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~------------------l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~ 63 (155)
+++|++|++|.++++. +.. +|.++. ....+..+.+.++.-....+ ..+..+++|+.|.
T Consensus 444 l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLN 521 (876)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEE
T ss_pred HhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEE
Confidence 6788888888888764 554 555543 33344445555554333333 2356777888888
Q ss_pred ccCcccCcc--cccCCC----ccccCCcccEEeecCCccCcCCCc--CCCCCCCcCeEEEecCc
Q 031657 64 LGIMLQLEE--WDFGKE----DITIMPQVKSLSIFFCEKLKSLPD--QLLRSTTLESLEIADVP 119 (155)
Q Consensus 64 l~~~~~L~~--~~~~~~----~~~~~p~L~~L~i~~C~~L~~lp~--~~~~l~~L~~L~i~~c~ 119 (155)
++++..+.. ++...+ ....+++|+.|.+..+ ++..+|. .+.++++|+.|.++++.
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSC
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCC
Confidence 777653432 332111 0113456666666665 3556666 55556666666665543
No 40
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.97 E-value=7.9e-05 Score=57.26 Aligned_cols=110 Identities=19% Similarity=0.152 Sum_probs=76.0
Q ss_pred CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM 83 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~ 83 (155)
.+.+++|++|.++++ .+..++..+.+...+..+.+.++ .++..+......+++|++|.+++. .+..++.+.- ..+
T Consensus 73 ~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~--~~l 147 (290)
T 1p9a_G 73 DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLL--TPT 147 (290)
T ss_dssp CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTT--TTC
T ss_pred CCCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccChhhc--ccc
Confidence 468899999999876 46666654433333334444333 233333334667899999999875 5666654321 158
Q ss_pred CcccEEeecCCccCcCCCcCC-CCCCCcCeEEEecCc
Q 031657 84 PQVKSLSIFFCEKLKSLPDQL-LRSTTLESLEIADVP 119 (155)
Q Consensus 84 p~L~~L~i~~C~~L~~lp~~~-~~l~~L~~L~i~~c~ 119 (155)
++|+.|.+..+ +++.+|.+. .++++|+.|.++++.
T Consensus 148 ~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 148 PKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp TTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCc
Confidence 89999999987 689998864 569999999998764
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.97 E-value=6.8e-05 Score=60.91 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=50.4
Q ss_pred CCCCCCCceeeecccccceeeCc-ccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCccc-ccCCCccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGD-EFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEW-DFGKEDIT 81 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~-~~~~~~~~ 81 (155)
++.+++|++|.++++ .+..+.. .+.+...+..+.+.++ .++..+......+++|++|++.+.. +..+ +....
T Consensus 52 ~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~--- 125 (477)
T 2id5_A 52 FASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQ--- 125 (477)
T ss_dssp TTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTT---
T ss_pred ccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCc-cccCChhHcc---
Confidence 667777777777766 4555532 2222222333333332 1223332224456677777665532 2221 11111
Q ss_pred cCCcccEEeecCCccCcCC-CcCCCCCCCcCeEEEecC
Q 031657 82 IMPQVKSLSIFFCEKLKSL-PDQLLRSTTLESLEIADV 118 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~l-p~~~~~l~~L~~L~i~~c 118 (155)
.+++|+.|.+..+ ++..+ +..+..+++|++|.++++
T Consensus 126 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 126 DLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp TCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESC
T ss_pred ccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCC
Confidence 3555555555554 23322 233444555555555554
No 42
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.96 E-value=0.0001 Score=55.70 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=15.2
Q ss_pred CCCCCCCceeeecccccceeeCcc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDE 27 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~ 27 (155)
++.+++|++|.++++ .+..++..
T Consensus 81 ~~~l~~L~~L~l~~n-~l~~~~~~ 103 (270)
T 2o6q_A 81 FKELKNLETLWVTDN-KLQALPIG 103 (270)
T ss_dssp TSSCTTCCEEECCSS-CCCCCCTT
T ss_pred hcCCCCCCEEECCCC-cCCcCCHh
Confidence 567888888888766 35555443
No 43
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.95 E-value=0.00011 Score=54.19 Aligned_cols=110 Identities=14% Similarity=0.218 Sum_probs=54.8
Q ss_pred CCCCCCCceeeecccccceeeC-cccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVG-DEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI 82 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~ 82 (155)
++.+++|++|.++++ .+..+. ..+.+...+..+.+.+. .++..+......+++|+.|.+++. .+..+.... ...
T Consensus 52 ~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~--~~~ 126 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNAN-KINCLRVDA--FQD 126 (220)
T ss_dssp STTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT--TTT
T ss_pred hhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEECCCC-CCCEeCHHH--cCC
Confidence 555666666666655 244442 22222222222222222 222233222345666666666553 233332211 115
Q ss_pred CCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657 83 MPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP 119 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~ 119 (155)
+++|+.|.+.++ +++.++.. +..+++|+.|.+++.+
T Consensus 127 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 127 LHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 677777777775 46666653 5567778888776543
No 44
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.94 E-value=8.8e-07 Score=68.72 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=20.3
Q ss_pred cCCcccEEeecCCccCc-CCCcCCCCCCCcCeEEEecCc
Q 031657 82 IMPQVKSLSIFFCEKLK-SLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~-~lp~~~~~l~~L~~L~i~~c~ 119 (155)
.+++|+.|.+.+|..+. ..+..+.++++|++|.+++|.
T Consensus 220 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 45566666666654333 233344445666666666654
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.91 E-value=3.2e-05 Score=64.58 Aligned_cols=34 Identities=12% Similarity=0.240 Sum_probs=16.8
Q ss_pred CCcccEEeecCCccCcCCCcCCCCCC-CcCeEEEec
Q 031657 83 MPQVKSLSIFFCEKLKSLPDQLLRST-TLESLEIAD 117 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~~~~~l~-~L~~L~i~~ 117 (155)
+++|+.|.+.++ +++.+|..+..++ +|+.|.+++
T Consensus 520 l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 520 LYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp CTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCS
T ss_pred CCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccC
Confidence 445555555554 2445555444443 355555544
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.91 E-value=3.7e-05 Score=59.57 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=44.4
Q ss_pred ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
...+++|+.|++.+.. +..++... ...+++|+.|.+.++ ++..+|.++..+++|++|.++++.
T Consensus 212 ~~~l~~L~~L~Ls~n~-l~~~~~~~--~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 212 LKGLNNLAKLGLSFNS-ISAVDNGS--LANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp GTTCTTCCEEECCSSC-CCEECTTT--GGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCc-CceeChhh--ccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence 4456677777776542 33333211 226889999999887 688899888889999999998775
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.91 E-value=8.2e-05 Score=60.84 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=25.7
Q ss_pred cCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657 54 VAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV 118 (155)
Q Consensus 54 ~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c 118 (155)
..+++|++|++++. +++.++ .+ .+++|+.|.+..+ +++.++ +.++++|++|+++++
T Consensus 103 ~~l~~L~~L~L~~N-~l~~l~--~~---~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 103 TPLTKLTYLNCDTN-KLTKLD--VS---QNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLN 158 (457)
T ss_dssp TTCTTCCEEECCSS-CCSCCC--CT---TCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTC
T ss_pred CCCCcCCEEECCCC-cCCeec--CC---CCCcCCEEECCCC-ccceec--cccCCcCCEEECCCC
Confidence 34555555555443 233322 11 4555555555554 344443 334555555555544
No 48
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.91 E-value=4.6e-05 Score=60.39 Aligned_cols=110 Identities=16% Similarity=0.189 Sum_probs=56.0
Q ss_pred CCCCCCCceeeecccccceeeCc-ccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGD-EFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI 82 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~ 82 (155)
++.+++|++|.+.++. +..++. .+.....+..+.+.++. ++..+......+++|++|++.++ .+..++...- ..
T Consensus 65 ~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~ 139 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIF--HN 139 (390)
T ss_dssp HHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT--TT
T ss_pred hcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHh--cC
Confidence 3456666666666552 444443 22222222333333321 22222222456677777777664 3444443320 14
Q ss_pred CCcccEEeecCCccCcCCC-cCCCCCCCcCeEEEecCc
Q 031657 83 MPQVKSLSIFFCEKLKSLP-DQLLRSTTLESLEIADVP 119 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp-~~~~~l~~L~~L~i~~c~ 119 (155)
+++|+.|.+.++ ++..++ ..+..+++|++|.++++.
T Consensus 140 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 140 TPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp CTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCc
Confidence 677777777766 355443 345566777777776654
No 49
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.91 E-value=7.6e-05 Score=55.01 Aligned_cols=109 Identities=15% Similarity=0.186 Sum_probs=64.4
Q ss_pred CCCCCCCceeeecccccceeeCcc-cccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccc-cCCCccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDE-FLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWD-FGKEDIT 81 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~-~~~~~~~ 81 (155)
++.+++|++|.++++ .+..++.. +.+...+..+.+.++ .++..+......+++|++|.+++.. +..+. ....
T Consensus 53 ~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~--- 126 (220)
T 2v70_A 53 FKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFI--- 126 (220)
T ss_dssp GGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSST---
T ss_pred hccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcC---
Confidence 567777788877765 35555542 222222223333322 1222222234567788888877643 44442 2222
Q ss_pred cCCcccEEeecCCccCcCC-CcCCCCCCCcCeEEEecCc
Q 031657 82 IMPQVKSLSIFFCEKLKSL-PDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~l-p~~~~~l~~L~~L~i~~c~ 119 (155)
.+++|+.|.+.++ +++.+ |..+..+++|+.|.+++.+
T Consensus 127 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 127 GLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 5788999998886 57766 5667778899999887654
No 50
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.91 E-value=6e-05 Score=58.32 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=12.5
Q ss_pred CCCCCCCceeeecccccceee
Q 031657 4 LGKLPSLEILRIEEMVSVKMV 24 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l 24 (155)
++.+++|++|.++++. +..+
T Consensus 81 ~~~l~~L~~L~L~~n~-l~~~ 100 (308)
T 1h6u_A 81 LKNLTKITELELSGNP-LKNV 100 (308)
T ss_dssp GTTCCSCCEEECCSCC-CSCC
T ss_pred HccCCCCCEEEccCCc-CCCc
Confidence 5667777777777653 4443
No 51
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.90 E-value=3.9e-05 Score=58.97 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=19.2
Q ss_pred cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657 82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV 118 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c 118 (155)
.+++|+.|.+..| ++..++. +..+++|+.|.++++
T Consensus 154 ~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 154 RLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN 188 (291)
T ss_dssp GCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS
T ss_pred cCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC
Confidence 4555555555554 3554444 444666666666554
No 52
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.90 E-value=7e-05 Score=58.41 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=65.2
Q ss_pred CCCCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccc
Q 031657 2 PPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDIT 81 (155)
Q Consensus 2 p~l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~ 81 (155)
|.++.+.+|++|.+++...+..++.+. +..+++|+.|+|++. +|..++... ..
T Consensus 25 p~l~~~~~L~~L~l~~~n~l~~~~~~~------------------------~~~l~~L~~L~l~~N-~l~~~~~~~--~~ 77 (347)
T 2ifg_A 25 HHLPGAENLTELYIENQQHLQHLELRD------------------------LRGLGELRNLTIVKS-GLRFVAPDA--FH 77 (347)
T ss_dssp TTSCSCSCCSEEECCSCSSCCEECGGG------------------------SCSCCCCSEEECCSS-CCCEECTTG--GG
T ss_pred CCCCCCCCeeEEEccCCCCCCCcChhH------------------------hccccCCCEEECCCC-ccceeCHHH--hc
Confidence 446777788888887645666665432 447899999999886 677766432 12
Q ss_pred cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
.+++|+.|.+.+. +|..+|........|+.|.+.+.+
T Consensus 78 ~l~~L~~L~l~~N-~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 78 FTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCcCCCEEeCCCC-ccceeCHHHcccCCceEEEeeCCC
Confidence 6999999999885 799998865544459999987543
No 53
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.89 E-value=4.2e-05 Score=62.16 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=19.8
Q ss_pred cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657 82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV 118 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c 118 (155)
.+++|+.|.+..|+.+..+|.......+|+.|.++++
T Consensus 198 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 234 (477)
T 2id5_A 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234 (477)
T ss_dssp SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred cCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence 3555666666665555555544444445555555544
No 54
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.88 E-value=6e-06 Score=56.92 Aligned_cols=105 Identities=16% Similarity=0.151 Sum_probs=68.3
Q ss_pred CCCCCceeeecccccce--eeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcc-cccCCCcccc
Q 031657 6 KLPSLEILRIEEMVSVK--MVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEE-WDFGKEDITI 82 (155)
Q Consensus 6 ~L~~L~~L~i~~~~~l~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~-~~~~~~~~~~ 82 (155)
..++|++|.++++. +. .++..+.....+..+.+.++ .++.. .....+++|++|.++++. +.. ++.... .
T Consensus 15 ~~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~---~ 86 (149)
T 2je0_A 15 TPSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDNR-VSGGLEVLAE---K 86 (149)
T ss_dssp CGGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSSC-CCSCTHHHHH---H
T ss_pred CCccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCCc-ccchHHHHhh---h
Confidence 45678888888774 44 55443333333334444443 22222 235678999999998764 333 333222 5
Q ss_pred CCcccEEeecCCccCcCCC--cCCCCCCCcCeEEEecCc
Q 031657 83 MPQVKSLSIFFCEKLKSLP--DQLLRSTTLESLEIADVP 119 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp--~~~~~l~~L~~L~i~~c~ 119 (155)
+++|+.|.+.++ +++.++ ..+.++++|+.|.+++++
T Consensus 87 l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 87 CPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp CTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred CCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 899999999998 477765 667779999999999875
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.88 E-value=4.4e-05 Score=64.21 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=63.1
Q ss_pred CCCCCCCceeeecccccceeeCc-ccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCC-Cccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGD-EFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGK-EDIT 81 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~-~~~~ 81 (155)
++.+++|++|.++++. +..++. .+.....+..+.+.++. ++..+...+..+++|++|+++++ .+..++... +
T Consensus 71 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~--- 144 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFH--- 144 (597)
T ss_dssp HHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT---
T ss_pred HccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhc---
Confidence 4556777777777663 555543 22222333344444332 33333333456778888887765 455555432 2
Q ss_pred cCCcccEEeecCCccCcCCCc-CCCCCCCcCeEEEecCc
Q 031657 82 IMPQVKSLSIFFCEKLKSLPD-QLLRSTTLESLEIADVP 119 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~ 119 (155)
.+++|+.|.+.++ .+..++. .+.++++|+.|.++++.
T Consensus 145 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 145 NTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp TCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCC
Confidence 5778888888776 4555443 46667778877777654
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.87 E-value=0.00017 Score=55.19 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=14.0
Q ss_pred CCcccEEeecCCccCcCCCc-CCCCCCCcCeEEEecC
Q 031657 83 MPQVKSLSIFFCEKLKSLPD-QLLRSTTLESLEIADV 118 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c 118 (155)
+++|+.|.+.++ ++..++. .+..+++|+.|+++++
T Consensus 198 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 198 LSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp CTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTS
T ss_pred CCCCCEEECCCC-ccCccChhhccCcccCCEeECCCC
Confidence 444444444443 2333322 2233444444444443
No 57
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.87 E-value=1.5e-05 Score=62.05 Aligned_cols=106 Identities=16% Similarity=0.137 Sum_probs=69.4
Q ss_pred CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM 83 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~ 83 (155)
++.+++|++|.++++. +..++. +.....+..+.+.++ .++.. .....+++|++|.++++ .+..++.. ..+
T Consensus 217 ~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~----~~l 286 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTN-QISDI--NAVKDLTKLKMLNVGSN-QISDISVL----NNL 286 (347)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCC--GGGTTCTTCCEEECCSS-CCCCCGGG----GGC
T ss_pred hhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCC-ccCCC--hhHhcCCCcCEEEccCC-ccCCChhh----cCC
Confidence 5678899999998873 444433 222233334444444 22222 22567899999999886 55555432 268
Q ss_pred CcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 84 PQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 84 p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
++|+.|.+.+|+--...+..+..+++|+.|++++|+
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 999999999985333444556678999999999987
No 58
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.86 E-value=9.7e-05 Score=55.97 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=5.5
Q ss_pred CCCCCCceeeecc
Q 031657 5 GKLPSLEILRIEE 17 (155)
Q Consensus 5 ~~L~~L~~L~i~~ 17 (155)
+.+++|++|.+++
T Consensus 60 ~~l~~L~~L~L~~ 72 (263)
T 1xeu_A 60 QFFTNLKELHLSH 72 (263)
T ss_dssp GGCTTCCEEECCS
T ss_pred hhCCCCCEEECCC
Confidence 3344444444443
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.86 E-value=7.9e-05 Score=56.28 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=59.5
Q ss_pred CCCCCCCceeeecccccceeeCcccc-cCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCccccc-CCCccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDF-GKEDIT 81 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~-~~~~~~ 81 (155)
++++++|++|.++++ .+..++.... ....+..+.+.++. ++.........+++|++|.+.+.. +..+.. .. .
T Consensus 48 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~---~ 121 (276)
T 2z62_A 48 FFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPI---G 121 (276)
T ss_dssp TTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCC---T
T ss_pred hccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCC-ccccCchhc---c
Confidence 566677777777665 3555543222 22222233333221 111121224456677777765542 222221 12 2
Q ss_pred cCCcccEEeecCCccCcC--CCcCCCCCCCcCeEEEecCc
Q 031657 82 IMPQVKSLSIFFCEKLKS--LPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~--lp~~~~~l~~L~~L~i~~c~ 119 (155)
.+++|+.|.+..+ ++.. +|..+.++++|++|+++++.
T Consensus 122 ~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 122 HLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp TCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC
Confidence 5788888888876 4554 57777778888888888764
No 60
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.86 E-value=0.00014 Score=60.58 Aligned_cols=37 Identities=14% Similarity=0.375 Sum_probs=27.3
Q ss_pred cCCcccEEeecCCccCcCC-CcCCCCCCCcCeEEEecCc
Q 031657 82 IMPQVKSLSIFFCEKLKSL-PDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~l-p~~~~~l~~L~~L~i~~c~ 119 (155)
.+++|+.|.+.+| ++..+ |..+..+++|++|+++++.
T Consensus 474 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 474 TLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp GCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCCCccEEECCCC-ccCccChhhhccccCCCEEECCCCc
Confidence 5778888888887 45544 5666778888888888774
No 61
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.85 E-value=3.5e-05 Score=59.68 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=11.3
Q ss_pred CCCCCCCceeeecccccce
Q 031657 4 LGKLPSLEILRIEEMVSVK 22 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~ 22 (155)
++++++|++|.++++..+.
T Consensus 72 l~~l~~L~~L~L~~~n~l~ 90 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLV 90 (313)
T ss_dssp GGGCTTCSEEEEEEETTEE
T ss_pred HhCCCCCCeeeCCCCCccc
Confidence 5666777777776533333
No 62
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.84 E-value=0.00011 Score=52.42 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=50.2
Q ss_pred ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657 53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP 119 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~ 119 (155)
+..+++|++|++++. ++..++...- ..+++|+.|.+.+. +++.+|.. +.++++|+.|.+++.+
T Consensus 53 ~~~l~~L~~L~Ls~N-~l~~i~~~~~--~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 53 FDHLVNLQQLYFNSN-KLTAIPTGVF--DKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred hcCCcCCCEEECCCC-CCCccChhHh--CCcchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCCC
Confidence 557899999999875 6777765431 16899999999886 78888876 7789999999998754
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.84 E-value=5.2e-05 Score=59.35 Aligned_cols=64 Identities=19% Similarity=0.178 Sum_probs=43.4
Q ss_pred ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcC-CCcCCCCCCCcCeEEEecCc
Q 031657 53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKS-LPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~-lp~~~~~l~~L~~L~i~~c~ 119 (155)
...+++|++|.+.++..+..++... ...+++|+.|.+..+. +.. .|..+..+++|++|.++++.
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTKIQRKD--FAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTT--TTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSC
T ss_pred hccCCCCcEEECCCCccccccCHHH--ccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCc
Confidence 4567778888777765566554221 1258889999998874 544 46677778888888887664
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.84 E-value=7.6e-05 Score=61.57 Aligned_cols=110 Identities=21% Similarity=0.211 Sum_probs=66.3
Q ss_pred CCCCCCCceeeecccccceeeCcccccCcccccccccCcccc-CCCCCCcccCCCCcceeeccCcccCccc-ccCCCccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSS-SSSSSSSVVAFPKLEKLDLGIMLQLEEW-DFGKEDIT 81 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~L~~L~l~~~~~L~~~-~~~~~~~~ 81 (155)
++.+++|++|.++++.-....+..+.+...+..+.+.++.-. ...+ .....+++|++|+++++. +..+ +....
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~--- 491 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQ-LEQLSPTAFN--- 491 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSC-CCEECTTTTT---
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch-hhhhcccCCCEEECCCCc-cccCChhhhh---
Confidence 556667777777666422222222222233333444444211 0111 125567888888887764 4443 33333
Q ss_pred cCCcccEEeecCCccCcCCCc-CCCCCCCcCeEEEecCc
Q 031657 82 IMPQVKSLSIFFCEKLKSLPD-QLLRSTTLESLEIADVP 119 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~ 119 (155)
.+++|+.|.+.+| ++..+|. .+.++++|+.|++++++
T Consensus 492 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 492 SLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 6899999999998 6877765 46789999999999855
No 65
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.83 E-value=2.1e-05 Score=54.08 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=34.5
Q ss_pred ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcC-CCcCCCCCCCcCeEEEecCc
Q 031657 53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKS-LPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~-lp~~~~~l~~L~~L~i~~c~ 119 (155)
...+++|+.|.+.++ .+..+ ... ..+++|+.|.+..+ ++.. +|....++++|+.|.++++.
T Consensus 38 ~~~l~~L~~L~l~~n-~l~~~-~~~---~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ls~N~ 99 (149)
T 2je0_A 38 TDEFEELEFLSTINV-GLTSI-ANL---PKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGNK 99 (149)
T ss_dssp CTTCTTCCEEECTTS-CCCCC-TTC---CCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEECTTSC
T ss_pred HhhcCCCcEEECcCC-CCCCc-hhh---hcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEECCCCc
Confidence 345666777766654 34444 111 15666777776665 3444 55444446667777766654
No 66
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.83 E-value=1.7e-05 Score=61.44 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=48.8
Q ss_pred CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM 83 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~ 83 (155)
++++++|++|.++++.--..++..+.....+..+++.++.-....+ .....+++|++|.+.+..--..++.... .+
T Consensus 97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~---~l 172 (313)
T 1ogq_A 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAIPDSYG---SF 172 (313)
T ss_dssp GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC-GGGGGCTTCCEEECCSSCCEEECCGGGG---CC
T ss_pred HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC-hHHhcCCCCCeEECcCCcccCcCCHHHh---hh
Confidence 5566667777666653222344333322222333333221110111 1134455666666655431113332222 34
Q ss_pred C-cccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 84 P-QVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 84 p-~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
+ .|+.|.+..+.--..+|..+..+. |+.|+++++.
T Consensus 173 ~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp CTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred hhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 4 566666665532224555444444 6666665543
No 67
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.81 E-value=5.2e-05 Score=62.43 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=19.4
Q ss_pred cCCcccEEeecCCccCcCCC-cCCCCCCCcCeEEEecC
Q 031657 82 IMPQVKSLSIFFCEKLKSLP-DQLLRSTTLESLEIADV 118 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp-~~~~~l~~L~~L~i~~c 118 (155)
.+++|+.|.+..+..+..+| ..+.++++|++|+++++
T Consensus 121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred ccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 45555666655554444444 23444555555555544
No 68
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.81 E-value=3.9e-05 Score=60.84 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=56.0
Q ss_pred CCCCCCCceeeecccccceee-CcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMV-GDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI 82 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~ 82 (155)
++.+++|++|.++++. +..+ +..+.....+..+.+.++ .++..+. ....+++|++|+++++ .+..++.... .
T Consensus 244 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~---~ 316 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNN-RLVALNL-YGQPIPTLKVLDLSHN-HLLHVERNQP---Q 316 (390)
T ss_dssp GGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSS-CCCEEEC-SSSCCTTCCEEECCSS-CCCCCGGGHH---H
T ss_pred HcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCC-cCcccCc-ccCCCCCCCEEECCCC-cceecCcccc---c
Confidence 4456667777776653 3333 222222222233333332 1111111 1235677777777665 4555544333 5
Q ss_pred CCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 83 MPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
+++|+.|.+.++ .+..++ +..+++|+.|.+++++
T Consensus 317 l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 317 FDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp HTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred cCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCC
Confidence 777777777776 366665 3457778888887755
No 69
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.81 E-value=7.8e-05 Score=61.13 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=21.0
Q ss_pred cCCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657 82 IMPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP 119 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~ 119 (155)
.+++|+.|.+.++ +++.+|.. +.++++|++|++++++
T Consensus 442 ~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 442 KLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp GCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 4556666666655 45555554 4455666666665543
No 70
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.78 E-value=8.8e-06 Score=69.13 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=22.0
Q ss_pred cCCcccEEeecCCccCcCCCcCCCCCCC-cCeEEEecCc
Q 031657 82 IMPQVKSLSIFFCEKLKSLPDQLLRSTT-LESLEIADVP 119 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~-L~~L~i~~c~ 119 (155)
.+++|+.|.+..+ ++..+|..+.++++ |++|.++++.
T Consensus 351 ~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 351 SEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp EEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSC
T ss_pred CCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCc
Confidence 4556666666555 35566666555666 6666666554
No 71
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.78 E-value=0.00035 Score=49.27 Aligned_cols=108 Identities=20% Similarity=0.178 Sum_probs=65.2
Q ss_pred CCCCCceeeecccccceeeCcccc-cCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCC
Q 031657 6 KLPSLEILRIEEMVSVKMVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMP 84 (155)
Q Consensus 6 ~L~~L~~L~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p 84 (155)
..++|++|.+.++. +..++.... ....+..+.+.++ .++..+......+++|++|.+.+. ++..++...- ..++
T Consensus 26 ~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~--~~l~ 100 (177)
T 2o6r_A 26 IPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVF--DKLT 100 (177)
T ss_dssp CCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT--TTCT
T ss_pred CCCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHh--hCCc
Confidence 34678888887753 555554332 2222333333332 233333333456788888888764 4555543321 1578
Q ss_pred cccEEeecCCccCcCCCcCC-CCCCCcCeEEEecCc
Q 031657 85 QVKSLSIFFCEKLKSLPDQL-LRSTTLESLEIADVP 119 (155)
Q Consensus 85 ~L~~L~i~~C~~L~~lp~~~-~~l~~L~~L~i~~c~ 119 (155)
+|+.|.+.++ +++.+|... .++++|+.|++++.+
T Consensus 101 ~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 101 QLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 8888888886 677887754 568888888887765
No 72
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.77 E-value=9.8e-05 Score=57.97 Aligned_cols=101 Identities=13% Similarity=0.072 Sum_probs=67.1
Q ss_pred CCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcccE
Q 031657 9 SLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKS 88 (155)
Q Consensus 9 ~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~ 88 (155)
.|+.|.++++ .++.++.+.........+.+.++..+...+......+++|++|++++. +++.++.. .|..|+.
T Consensus 155 ~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~-----~~~~L~~ 227 (350)
T 4ay9_X 155 ESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY-----GLENLKK 227 (350)
T ss_dssp SCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS-----SCTTCCE
T ss_pred hhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh-----hhccchH
Confidence 3555555543 355554443332233334444555566665544567788888888775 57777643 5889999
Q ss_pred EeecCCccCcCCCcCCCCCCCcCeEEEec
Q 031657 89 LSIFFCEKLKSLPDQLLRSTTLESLEIAD 117 (155)
Q Consensus 89 L~i~~C~~L~~lp~~~~~l~~L~~L~i~~ 117 (155)
|.+.++.+++.+|. +.++++|+.+.+.+
T Consensus 228 L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 228 LRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp EECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred hhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 99999999999995 56699999998853
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.77 E-value=0.00038 Score=56.85 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=27.9
Q ss_pred CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657 55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV 118 (155)
Q Consensus 55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c 118 (155)
.+++|++|++.++..+..+.. ..+++|+.|.+..+ +++.+| +..+++|+.|.++++
T Consensus 146 ~l~~L~~L~l~~n~~~~~~~~-----~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 146 HNTQLTELDCHLNKKITKLDV-----TPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTN 201 (457)
T ss_dssp TCTTCCEEECTTCSCCCCCCC-----TTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCSS
T ss_pred cCCcCCEEECCCCCccccccc-----ccCCcCCEEECCCC-ccceec--cccCCCCCEEECcCC
Confidence 344455555444433333311 14566666666655 455555 334556666655544
No 74
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.77 E-value=3.7e-05 Score=54.52 Aligned_cols=107 Identities=14% Similarity=0.091 Sum_probs=66.6
Q ss_pred CCCCCCCceeeecccccceeeCcccccCc-ccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFLGIG-ICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI 82 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~ 82 (155)
+..+++|++|.++++ .+..++. +.... .+..+.+.++ .++.. .....+++|++|.+++. .+..++... ...
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~--~~l~~l~~L~~L~Ls~N-~l~~~~~~~--~~~ 86 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDN-EIRKL--DGFPLLRRLKTLLVNNN-RICRIGEGL--DQA 86 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSS-CCCEE--CCCCCCSSCCEEECCSS-CCCEECSCH--HHH
T ss_pred cCCcCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCC-CCCcc--cccccCCCCCEEECCCC-cccccCcch--hhc
Confidence 456778899999877 4555532 22211 2233333333 12222 12557888888888775 355554332 026
Q ss_pred CCcccEEeecCCccCcCCCc--CCCCCCCcCeEEEecCc
Q 031657 83 MPQVKSLSIFFCEKLKSLPD--QLLRSTTLESLEIADVP 119 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~--~~~~l~~L~~L~i~~c~ 119 (155)
+++|+.|.+.++ ++..+|. .+.++++|+.|.+++++
T Consensus 87 l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 87 LPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp CTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred CCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC
Confidence 888999988887 5777776 56678888888888876
No 75
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.76 E-value=3.7e-05 Score=64.81 Aligned_cols=101 Identities=16% Similarity=0.228 Sum_probs=59.8
Q ss_pred CCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcccE
Q 031657 9 SLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKS 88 (155)
Q Consensus 9 ~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~ 88 (155)
.|+.|.++++ .+..++. +.....+..+.++++ .++..+. .+..+++|+.|.+++. .+..++ ..+ .+++|+.
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~-~~~~l~~L~~L~Ls~N-~l~~lp-~l~---~l~~L~~ 512 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPP-ALAALRCLEVLQASDN-ALENVD-GVA---NLPRLQE 512 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCG-GGGGCTTCCEEECCSS-CCCCCG-GGT---TCSSCCE
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccccch-hhhcCCCCCEEECCCC-CCCCCc-ccC---CCCCCcE
Confidence 3566666655 3444443 322222223333322 1222222 2557888888888764 455555 333 6888888
Q ss_pred EeecCCccCcCC--CcCCCCCCCcCeEEEecCc
Q 031657 89 LSIFFCEKLKSL--PDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 89 L~i~~C~~L~~l--p~~~~~l~~L~~L~i~~c~ 119 (155)
|.+.++ ++..+ |..+..+++|+.|.+++++
T Consensus 513 L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 513 LLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp EECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred EECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 888876 67777 7777778888888888765
No 76
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.74 E-value=0.00011 Score=56.46 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=42.9
Q ss_pred ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
...+++|+.|.++++ .+..++. ...+++|+.|.+.++ .++.++. +..+++|+.|++++++
T Consensus 152 l~~l~~L~~L~L~~N-~l~~~~~----l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 152 LSRLTKLDTLSLEDN-QISDIVP----LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGGCTTCSEEECCSS-CCCCCGG----GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred hccCCCCCEEEccCC-ccccchh----hcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCc
Confidence 345666666666654 3333332 226899999999998 6888875 6679999999999865
No 77
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.74 E-value=0.00017 Score=58.61 Aligned_cols=36 Identities=14% Similarity=0.209 Sum_probs=19.4
Q ss_pred cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
.+++|+.|.+.+| ++..++ .+.++++|+.|++++|.
T Consensus 329 ~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 329 SLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp GCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred cCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc
Confidence 4556666666555 344443 33345666666665553
No 78
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.73 E-value=0.00048 Score=50.62 Aligned_cols=106 Identities=14% Similarity=0.104 Sum_probs=59.8
Q ss_pred CCCceeeecccccceeeCcccc-cCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcc
Q 031657 8 PSLEILRIEEMVSVKMVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQV 86 (155)
Q Consensus 8 ~~L~~L~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L 86 (155)
++|++|.+.++ .+..++.... +...+..+.+.++ .++......+..+++|++|++++. .+..++...- ..+++|
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f--~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN-KITELPKSLF--EGLFSL 106 (220)
T ss_dssp TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTT--TTCTTC
T ss_pred cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHc--cCCCCC
Confidence 47888888876 4666654322 2222233333332 122222223556777777777663 4555543321 147788
Q ss_pred cEEeecCCccCcCCC-cCCCCCCCcCeEEEecCc
Q 031657 87 KSLSIFFCEKLKSLP-DQLLRSTTLESLEIADVP 119 (155)
Q Consensus 87 ~~L~i~~C~~L~~lp-~~~~~l~~L~~L~i~~c~ 119 (155)
+.|.+..+ +++.++ ..+..+++|+.|.++++.
T Consensus 107 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 107 QLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCc
Confidence 88888776 466653 456667888888877654
No 79
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.72 E-value=0.00032 Score=56.34 Aligned_cols=13 Identities=23% Similarity=0.209 Sum_probs=6.5
Q ss_pred cCCCCcceeeccC
Q 031657 54 VAFPKLEKLDLGI 66 (155)
Q Consensus 54 ~~f~~L~~L~l~~ 66 (155)
..+++|++|++++
T Consensus 76 ~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 76 RGLSSLIILKLDY 88 (455)
T ss_dssp TTCTTCCEEECTT
T ss_pred cccccCCEEeCCC
Confidence 3445555555544
No 80
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.70 E-value=2.7e-05 Score=55.24 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=67.6
Q ss_pred CCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCccc
Q 031657 8 PSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVK 87 (155)
Q Consensus 8 ~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~ 87 (155)
++|++|.++++ .+..+ ..+.....+..+.+.++ .++..+......+++|+.|.+++. .+..++... ....+++|+
T Consensus 42 ~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~-~l~~l~~L~ 116 (176)
T 1a9n_A 42 DQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDLD-PLASLKSLT 116 (176)
T ss_dssp TCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGG-GGGGCTTCC
T ss_pred CCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-cCCcchhhH-hhhcCCCCC
Confidence 38888888876 45555 33333233333344333 122222221357899999999875 355555300 122699999
Q ss_pred EEeecCCccCcCCCcC----CCCCCCcCeEEEecCcc
Q 031657 88 SLSIFFCEKLKSLPDQ----LLRSTTLESLEIADVPI 120 (155)
Q Consensus 88 ~L~i~~C~~L~~lp~~----~~~l~~L~~L~i~~c~~ 120 (155)
.|.+.+++ +..+|.. +..+++|+.|+++++..
T Consensus 117 ~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 117 YLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 99999984 6777774 66799999999988873
No 81
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.69 E-value=1.8e-05 Score=57.30 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=50.3
Q ss_pred ccCCCCcceeeccCcccCcccccCCCcccc----CCcccEEeecCCccCcC--CCcCCCCCCCcCeEEEecCcchhh
Q 031657 53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITI----MPQVKSLSIFFCEKLKS--LPDQLLRSTTLESLEIADVPIVEE 123 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~----~p~L~~L~i~~C~~L~~--lp~~~~~l~~L~~L~i~~c~~l~~ 123 (155)
...+++|+.|.+.+|..+....... ... .++|+.|.+..|++++. +- .+.++++|++|.+++|+.+..
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCCc
Confidence 3478999999999999886543211 112 24799999999998863 21 234589999999999997764
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.68 E-value=0.00013 Score=57.18 Aligned_cols=63 Identities=11% Similarity=0.149 Sum_probs=34.1
Q ss_pred CCCCCCCceeeecccccceeeCccccc-CcccccccccCccccCCCCCCcccCCCCcceeeccC
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFLG-IGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGI 66 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~ 66 (155)
++.|++|++|.|+++.-++.++.+... ........+.++..++..+......+++|++|.+.+
T Consensus 50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~ 113 (350)
T 4ay9_X 50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 113 (350)
T ss_dssp STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEE
T ss_pred HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccc
Confidence 788999999999888766667654322 111122222233334443333344555666655543
No 83
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.67 E-value=0.0002 Score=54.22 Aligned_cols=105 Identities=14% Similarity=0.221 Sum_probs=69.9
Q ss_pred CCCCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccc
Q 031657 2 PPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDIT 81 (155)
Q Consensus 2 p~l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~ 81 (155)
|+++.+++|++|.++++ .+..++... . ..+..+.+.++ .++..+ ....+++|+.|++++. +++.++. ..
T Consensus 79 ~~l~~l~~L~~L~L~~N-~l~~l~~~~-~-~~L~~L~L~~N-~l~~~~--~l~~l~~L~~L~Ls~N-~i~~~~~----l~ 147 (263)
T 1xeu_A 79 SPLKDLTKLEELSVNRN-RLKNLNGIP-S-ACLSRLFLDNN-ELRDTD--SLIHLKNLEILSIRNN-KLKSIVM----LG 147 (263)
T ss_dssp GGGTTCSSCCEEECCSS-CCSCCTTCC-C-SSCCEEECCSS-CCSBSG--GGTTCTTCCEEECTTS-CCCBCGG----GG
T ss_pred hhhccCCCCCEEECCCC-ccCCcCccc-c-CcccEEEccCC-ccCCCh--hhcCcccccEEECCCC-cCCCChH----Hc
Confidence 34778999999999987 455554322 1 33334444443 222222 2567889999999775 3555542 22
Q ss_pred cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
.+++|+.|.+..+ ++..+ ..+..+++|+.|++++++
T Consensus 148 ~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 148 FLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp GCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred cCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCCc
Confidence 6899999999987 57776 556679999999998765
No 84
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.66 E-value=0.00018 Score=61.11 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=42.9
Q ss_pred ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
...+++|+.|.++++ .+..+.. . ..+++|+.|.+..| .+..++. +.++++|+.|.+++++
T Consensus 149 l~~l~~L~~L~Ls~N-~l~~~~~-l---~~l~~L~~L~Ls~N-~i~~l~~-l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 149 LSRLTKLDTLSLEDN-QISDIVP-L---AGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE 208 (605)
T ss_dssp GGSCTTCSEEECCSS-CCCCCGG-G---TTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEECCSEE
T ss_pred hcccCCCCEEECcCC-cCCCchh-h---ccCCCCCEEECcCC-CCCCChH-HccCCCCCEEEccCCc
Confidence 445677777777665 2333322 2 26899999999998 6887764 5669999999998875
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.66 E-value=0.00049 Score=51.86 Aligned_cols=106 Identities=15% Similarity=0.147 Sum_probs=65.9
Q ss_pred CCCceeeecccccceeeCcc-cccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcc
Q 031657 8 PSLEILRIEEMVSVKMVGDE-FLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQV 86 (155)
Q Consensus 8 ~~L~~L~i~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L 86 (155)
++|++|.++++ .+..++.. +.....+..+.+.++ .++.........+++|++|++++.. +..++... ...+++|
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~--~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGA--FSGLSSL 102 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTT--TTTCTTC
T ss_pred CCccEEECCCC-cccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhh--hcCCccc
Confidence 46999999877 46666653 322333344444444 2233332335567888888887753 44443221 1268889
Q ss_pred cEEeecCCccCcCCCc-CCCCCCCcCeEEEecCc
Q 031657 87 KSLSIFFCEKLKSLPD-QLLRSTTLESLEIADVP 119 (155)
Q Consensus 87 ~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~ 119 (155)
+.|.+..+ ++..++. .+.++++|++|.++++.
T Consensus 103 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 135 (276)
T 2z62_A 103 QKLVAVET-NLASLENFPIGHLKTLKELNVAHNL 135 (276)
T ss_dssp CEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred cEEECCCC-CccccCchhcccCCCCCEEECcCCc
Confidence 99998887 4666655 56678899999988764
No 86
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.66 E-value=4.9e-05 Score=67.28 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=24.2
Q ss_pred CC--CCCCCceeeecccccceeeCcccccCcccccccccCc
Q 031657 4 LG--KLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGT 42 (155)
Q Consensus 4 l~--~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~ 42 (155)
++ +|++|++|.+++|.-...+|..+.....+..+.+.++
T Consensus 485 l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 55 8888888888887656666655544333344444433
No 87
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.65 E-value=0.00045 Score=53.48 Aligned_cols=103 Identities=16% Similarity=0.220 Sum_probs=56.8
Q ss_pred CCCceeeecccccceeeCcc-cccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcc
Q 031657 8 PSLEILRIEEMVSVKMVGDE-FLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQV 86 (155)
Q Consensus 8 ~~L~~L~i~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L 86 (155)
++|++|.++++. +..++.+ +.....+..+.+.++. ++.........+++|++|++.+. .+..++.. .+++|
T Consensus 54 ~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~-----~~~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKN-HLVEIPPN-----LPSSL 125 (332)
T ss_dssp TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSS-CCCSCCSS-----CCTTC
T ss_pred CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCC-cCCccCcc-----ccccC
Confidence 567777777653 5555432 2222222333333321 11111122456778888887664 34444432 34778
Q ss_pred cEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657 87 KSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP 119 (155)
Q Consensus 87 ~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~ 119 (155)
+.|.+..+ ++..+|.. +.++++|+.|.++++.
T Consensus 126 ~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 126 VELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp CEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred CEEECCCC-ccCccCHhHhCCCccCCEEECCCCc
Confidence 88887776 46666653 5567888888877664
No 88
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.64 E-value=0.0005 Score=49.61 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=68.0
Q ss_pred CCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCccc
Q 031657 8 PSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVK 87 (155)
Q Consensus 8 ~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~ 87 (155)
++|++|.+.++ .+..++..+.....+..+.+.+. .++......+..+++|++|++++. .+..++... ...+++|+
T Consensus 31 ~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~--f~~l~~L~ 105 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRT--FDGLKSLR 105 (193)
T ss_dssp TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTT--TTTCTTCC
T ss_pred CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHH--hCCCCCCC
Confidence 47888888765 46666654443333333444332 233333333567888999988774 355554321 12688999
Q ss_pred EEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657 88 SLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP 119 (155)
Q Consensus 88 ~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~ 119 (155)
.|.+.++ ++..+|.. +..+++|+.|.+++.+
T Consensus 106 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 106 LLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp EEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 9999886 68888875 5678999999987643
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.63 E-value=2.7e-06 Score=65.92 Aligned_cols=16 Identities=6% Similarity=-0.072 Sum_probs=10.7
Q ss_pred CCCCCCCceeeecccc
Q 031657 4 LGKLPSLEILRIEEMV 19 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~ 19 (155)
+..+++|++|.+++|.
T Consensus 89 ~~~~~~L~~L~L~~~~ 104 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSV 104 (336)
T ss_dssp CCCCBCCCEEECTTCE
T ss_pred hccCCCCCEEEccCCC
Confidence 4556777777777663
No 90
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.63 E-value=0.00094 Score=56.43 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=31.3
Q ss_pred cCCCCcceeeccCcc--cCcccccCCCccccCCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657 54 VAFPKLEKLDLGIML--QLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP 119 (155)
Q Consensus 54 ~~f~~L~~L~l~~~~--~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~ 119 (155)
..+++|+.|.+.++. .+..++.... .+++|+.|.+.++ ++..++.. +..+++|++|+++++.
T Consensus 451 ~~~~~L~~L~l~~n~l~~~~~~p~~~~---~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 451 ALVPSLQRLMLRRVALKNVDSSPSPFQ---PLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNN 515 (680)
T ss_dssp TTCTTCCEEECTTSCCBCTTCSSCTTT---TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcCcccccchhccccccccccCCcccc---cCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCC
Confidence 345555555554432 1122222222 4566666666665 45555543 4456666666666553
No 91
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.62 E-value=0.00064 Score=59.39 Aligned_cols=112 Identities=11% Similarity=0.041 Sum_probs=49.1
Q ss_pred CCCCCCCceeeecccccceeeCc-ccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGD-EFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI 82 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~ 82 (155)
+++|++|++|.++++.....+++ .+.....+..+.+.++. +..........+++|++|++.++.--..++.. .....
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~ 121 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD-GYFRN 121 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTT-CCCSS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccC-ccccc
Confidence 55666666666666544444422 22222222222332221 11111112445556666666554211112211 00114
Q ss_pred CCcccEEeecCCccCcCCC--cCCCCCCCcCeEEEecC
Q 031657 83 MPQVKSLSIFFCEKLKSLP--DQLLRSTTLESLEIADV 118 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp--~~~~~l~~L~~L~i~~c 118 (155)
+++|+.|.+..+ ++..++ ..+.++++|++|.++++
T Consensus 122 L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 122 LKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred cCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC
Confidence 666666666665 343332 23455666666666654
No 92
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.61 E-value=0.00028 Score=58.58 Aligned_cols=58 Identities=28% Similarity=0.353 Sum_probs=35.8
Q ss_pred CCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657 57 PKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP 119 (155)
Q Consensus 57 ~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~ 119 (155)
++|+.|+++++ +++.++.+.. .+++|+.|.+.++ +++.+|.. +..+++|+.|++++.+
T Consensus 450 ~~L~~L~L~~N-~l~~ip~~~~---~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 450 PKVKVLDLHNN-RIMSIPKDVT---HLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp TTCSEEECCSS-CCCCCCTTTT---SSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CcCCEEECCCC-cCcccChhhc---CCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCC
Confidence 35555555554 4444444333 5677777777775 56777765 5667777777776644
No 93
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.60 E-value=0.00035 Score=55.08 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=17.7
Q ss_pred cCCcccEEeecCCccCcCCCcCC----CCCCCcCeEEEec
Q 031657 82 IMPQVKSLSIFFCEKLKSLPDQL----LRSTTLESLEIAD 117 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~~~----~~l~~L~~L~i~~ 117 (155)
.+++|+.|.+..+ ++..+|... .++++|+.|++++
T Consensus 134 ~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 134 DMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp TCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCS
T ss_pred CcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCC
Confidence 3555666665554 455555432 2355555555544
No 94
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.58 E-value=0.00068 Score=55.30 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=35.3
Q ss_pred ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
...+++|+.|.++++. +..++. ..++|+.|.+.+| ++..+|. +..+++|++|+++++.
T Consensus 191 ~~~l~~L~~L~l~~N~-l~~l~~------~~~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 191 LQNLPFLTAIYADNNS-LKKLPD------LPLSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNNL 248 (454)
T ss_dssp CTTCTTCCEEECCSSC-CSSCCC------CCTTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSSC
T ss_pred ccCCCCCCEEECCCCc-CCcCCC------CcCcccEEECcCC-cCCcccc-cCCCCCCCEEECCCCc
Confidence 4455666666665532 222221 2357777777776 5667774 5567888888887753
No 95
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.58 E-value=0.00014 Score=56.27 Aligned_cols=60 Identities=25% Similarity=0.191 Sum_probs=44.6
Q ss_pred CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
.+++|++|+++++ .+..++.... .+++|+.|.+.++ +++.+|..+..+++|+.|++++++
T Consensus 189 ~l~~L~~L~Ls~N-~l~~l~~~~~---~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 189 VFAKLKTLDLSSN-KLAFMGPEFQ---SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CCTTCCEEECCSS-CCCEECGGGG---GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred ccccCCEEECCCC-cCCcchhhhc---ccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence 4677777777664 3445543332 6888999999887 688888888888999999998765
No 96
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.58 E-value=0.00012 Score=61.45 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=61.0
Q ss_pred CCCCCCCceeeecccccceee-CcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMV-GDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI 82 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~ 82 (155)
++.+++|++|.++++. +..+ +..+.....+..+.+.++ .++..+. ....+++|+.|+++++ .+..++.... .
T Consensus 250 l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~~~l~~L~~L~Ls~N-~l~~i~~~~~---~ 322 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNN-RLVALNL-YGQPIPTLKVLDLSHN-HLLHVERNQP---Q 322 (597)
T ss_dssp GGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTS-CCCEEEC-SSSCCTTCCEEECCSS-CCCCCGGGHH---H
T ss_pred hccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCC-CCCCCCc-ccccCCCCcEEECCCC-CCCccCcccc---c
Confidence 5567777777777664 3333 333323233333333332 1111111 1345778888888775 3445554433 6
Q ss_pred CCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 83 MPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
+++|+.|.+.+| ++..++ +..+++|+.|.+++++
T Consensus 323 l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 323 FDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp HTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence 788888888887 466665 3457888888888766
No 97
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.57 E-value=0.00084 Score=55.71 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=30.2
Q ss_pred CcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 84 PQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 84 p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
++|+.|.+..+ +++.+|..+.++++|+.|+++++.
T Consensus 450 ~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 450 PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC
T ss_pred CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC
Confidence 68999999887 788999887789999999998864
No 98
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.55 E-value=0.00029 Score=54.57 Aligned_cols=63 Identities=22% Similarity=0.361 Sum_probs=42.8
Q ss_pred ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
...+++|+.|++++. .+..++... ...+++|+.|.+.++ ++..+|.++..+++|+.|.++++.
T Consensus 213 l~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHN-QIRMIENGS--LSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp STTCTTCSCCBCCSS-CCCCCCTTG--GGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCC-cCCcCChhH--hhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC
Confidence 445566666666653 233332211 126888999999887 688888888788899999988765
No 99
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.52 E-value=0.00026 Score=58.21 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=38.3
Q ss_pred ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEec
Q 031657 53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIAD 117 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~ 117 (155)
...+++|++|++.++..+..++... ...+++|+.|.+..+.--...|..+..+++|++|.+++
T Consensus 119 ~~~l~~L~~L~L~~n~~~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 119 FPNLTNLQTLRIGNVETFSEIRRID--FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTT--TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred hhccCCccEEECCCCccccccCHhh--hhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence 4456777777777665555554211 12688899999888743334566665555555555544
No 100
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.52 E-value=0.0003 Score=50.64 Aligned_cols=105 Identities=14% Similarity=0.224 Sum_probs=64.2
Q ss_pred CCceeeecccccceeeCcc--cccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcc
Q 031657 9 SLEILRIEEMVSVKMVGDE--FLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQV 86 (155)
Q Consensus 9 ~L~~L~i~~~~~l~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L 86 (155)
+|++|.+.++ .+..++.. +.....+..+.+.+. .++.........+++|++|++++. ++..++... ...+++|
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L 104 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN-KIKEISNKM--FLGLHQL 104 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSS--STTCTTC
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC-cCCccCHHH--hcCCCCC
Confidence 7888888776 45555442 222222333333332 222222223557888999998774 455554331 1158899
Q ss_pred cEEeecCCccCcCC-CcCCCCCCCcCeEEEecCc
Q 031657 87 KSLSIFFCEKLKSL-PDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 87 ~~L~i~~C~~L~~l-p~~~~~l~~L~~L~i~~c~ 119 (155)
+.|.+..+ ++..+ |..+..+++|+.|.+++.+
T Consensus 105 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 105 KTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 99999887 56654 6677788999999987644
No 101
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.51 E-value=0.00022 Score=57.94 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=41.6
Q ss_pred cCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 54 VAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 54 ~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
..+++|+.|++.++ .+..++. ...+++|+.|.+.+|+ +..++. +.++++|+.|.+++|+
T Consensus 328 ~~l~~L~~L~l~~n-~l~~~~~----l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 328 SSLTKLQRLFFYNN-KVSDVSS----LANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp GGCTTCCEEECCSS-CCCCCGG----GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEE
T ss_pred ccCccCCEeECCCC-ccCCchh----hccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCc
Confidence 45666777766665 3443321 2268999999999984 666655 5679999999998875
No 102
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.51 E-value=0.00049 Score=48.62 Aligned_cols=63 Identities=25% Similarity=0.271 Sum_probs=49.4
Q ss_pred ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657 53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP 119 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~ 119 (155)
...+++|++|++++. +++.++...- ..+++|+.|.+... +++.+|.. +.++++|+.|.+++-+
T Consensus 50 ~~~l~~L~~L~Ls~N-~l~~l~~~~f--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 50 FDRLTQLTRLDLDNN-QLTVLPAGVF--DKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTCTTCSEEECCSS-CCCCCCTTTT--TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcCcccCCEEECCCC-CcCccChhhc--cCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 557899999999875 5776665431 26899999999886 68888875 6779999999998643
No 103
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.51 E-value=0.00062 Score=59.49 Aligned_cols=106 Identities=16% Similarity=0.213 Sum_probs=45.4
Q ss_pred CCCCceeeecccccceeeC-cccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCccc-ccCCCccccCC
Q 031657 7 LPSLEILRIEEMVSVKMVG-DEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEW-DFGKEDITIMP 84 (155)
Q Consensus 7 L~~L~~L~i~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~-~~~~~~~~~~p 84 (155)
.++|++|.++++. +..+. ..+.....+..+.+.++.............+++|++|.+.++. +..+ +.... .++
T Consensus 23 p~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~---~l~ 97 (844)
T 3j0a_A 23 LNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQ---GLF 97 (844)
T ss_dssp CTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSC---SCS
T ss_pred CCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHcc---CCc
Confidence 3455566655542 33332 2222222233334444322222222224455555555555432 2222 22222 455
Q ss_pred cccEEeecCCccCcC-CCcC--CCCCCCcCeEEEecC
Q 031657 85 QVKSLSIFFCEKLKS-LPDQ--LLRSTTLESLEIADV 118 (155)
Q Consensus 85 ~L~~L~i~~C~~L~~-lp~~--~~~l~~L~~L~i~~c 118 (155)
+|+.|.+..| ++.. +|.. +.++++|++|+++++
T Consensus 98 ~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N 133 (844)
T 3j0a_A 98 HLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN 133 (844)
T ss_dssp SCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred ccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC
Confidence 5556665555 2332 3332 445556666655554
No 104
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.44 E-value=0.00044 Score=58.45 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=32.4
Q ss_pred ccCCCCcceeeccCcccCccccc-CCCccccCCcccEEeecCCccCcCC-CcCCCCCCCcCeEEEecC
Q 031657 53 VVAFPKLEKLDLGIMLQLEEWDF-GKEDITIMPQVKSLSIFFCEKLKSL-PDQLLRSTTLESLEIADV 118 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~~~~-~~~~~~~~p~L~~L~i~~C~~L~~l-p~~~~~l~~L~~L~i~~c 118 (155)
...+++|++|++.++ .+..++. ..+ .+++|+.|.+..+. +... |..+.++++|++|.++++
T Consensus 93 ~~~l~~L~~L~L~~n-~l~~~~~~~~~---~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 93 FAFCTNLTELHLMSN-SIQKIKNNPFV---KQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp TTTCTTCSEEECCSS-CCCCCCSCTTT---TCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSS
T ss_pred hccCCCCCEEECCCC-ccCccChhHcc---ccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCC
Confidence 445666666666554 2333331 111 46667777766663 3333 334455666666666654
No 105
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.44 E-value=0.00059 Score=56.56 Aligned_cols=109 Identities=14% Similarity=0.148 Sum_probs=58.9
Q ss_pred CCCCCCCceeeecccccceee-CcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCcccc
Q 031657 4 LGKLPSLEILRIEEMVSVKMV-GDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITI 82 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~ 82 (155)
+..+++|+.|.+.++.....+ +..+.....+..+++.++ .++..+...+..+++|++|.+++. ++..++... ...
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~--~~~ 540 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFP--YKC 540 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGG--GTT
T ss_pred cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCChhH--HhC
Confidence 344555666666555433322 222222222233334333 223222233556778888888764 455544321 115
Q ss_pred CCcccEEeecCCccCcCCC-cCCCCC-CCcCeEEEec
Q 031657 83 MPQVKSLSIFFCEKLKSLP-DQLLRS-TTLESLEIAD 117 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp-~~~~~l-~~L~~L~i~~ 117 (155)
+++|+.|.+..+ ++..++ ..+.++ ++|+.|++++
T Consensus 541 l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 541 LNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeC
Confidence 788889988886 566654 455566 6899998864
No 106
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.38 E-value=0.0018 Score=49.98 Aligned_cols=37 Identities=14% Similarity=0.291 Sum_probs=25.7
Q ss_pred cCCcccEEeecCCccCcCCCc-CCCCCCCcCeEEEecCc
Q 031657 82 IMPQVKSLSIFFCEKLKSLPD-QLLRSTTLESLEIADVP 119 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~ 119 (155)
.+++|+.|.+..+ .+..++. .+..+++|++|+++++.
T Consensus 214 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 214 GLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp TCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSC
T ss_pred CCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCc
Confidence 5677888888776 4555543 45567888888888764
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.37 E-value=0.0025 Score=50.07 Aligned_cols=105 Identities=14% Similarity=0.134 Sum_probs=63.4
Q ss_pred CCceeeecccccceeeCcccc--cCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcc
Q 031657 9 SLEILRIEEMVSVKMVGDEFL--GIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQV 86 (155)
Q Consensus 9 ~L~~L~i~~~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L 86 (155)
.+++|.++++ .+..++.+.. +...+..+.+.++ .++......+..+++|++|++++. +++.++...- ..+++|
T Consensus 40 ~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~--~~l~~L 114 (361)
T 2xot_A 40 YTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLF--SDLQAL 114 (361)
T ss_dssp TCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTT--TTCTTC
T ss_pred CCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCHHHh--CCCcCC
Confidence 4777777765 4666654433 2222223333222 222222223557888899988774 3666654321 268899
Q ss_pred cEEeecCCccCcCC-CcCCCCCCCcCeEEEecCc
Q 031657 87 KSLSIFFCEKLKSL-PDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 87 ~~L~i~~C~~L~~l-p~~~~~l~~L~~L~i~~c~ 119 (155)
+.|.+.++ ++..+ |..+..+++|+.|.++++.
T Consensus 115 ~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 115 EVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp CEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCC-cccEECHHHhCCcccCCEEECCCCc
Confidence 99999887 46655 4567778999999988764
No 108
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.36 E-value=0.0003 Score=57.93 Aligned_cols=60 Identities=25% Similarity=0.191 Sum_probs=43.1
Q ss_pred CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
.+++|+.|++++. .+..++.... .+++|+.|.+.++ ++..+|..+..+++|+.|.+++++
T Consensus 189 ~l~~L~~L~Ls~N-~l~~~~~~~~---~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 189 VFAKLKTLDLSSN-KLAFMGPEFQ---SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CCTTCCEEECCSS-CCCEECGGGG---GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred cCCCCCEEECCCC-CCCCCCHhHc---CCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCC
Confidence 4667777777654 3444443332 6788888988886 577888888788899999888765
No 109
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.36 E-value=0.00045 Score=56.55 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=57.5
Q ss_pred CCCceeeecccccceeeCc-ccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcc
Q 031657 8 PSLEILRIEEMVSVKMVGD-EFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQV 86 (155)
Q Consensus 8 ~~L~~L~i~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L 86 (155)
++|++|.++++. +..++. .+.+...+..+.+.++. ++.........+++|++|++++. +++.++.. .+++|
T Consensus 21 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-----~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHN-KLVKISCH-----PTVNL 92 (520)
T ss_dssp TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSS-CCCEEECC-----CCCCC
T ss_pred ccccEEECCCCc-ccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCC-ceeecCcc-----ccCCc
Confidence 566777776653 444432 22222222333333321 11111112456788888888765 45555544 47788
Q ss_pred cEEeecCCccCcC--CCcCCCCCCCcCeEEEecCc
Q 031657 87 KSLSIFFCEKLKS--LPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 87 ~~L~i~~C~~L~~--lp~~~~~l~~L~~L~i~~c~ 119 (155)
+.|.+..+. +.. +|..+.++++|++|+++++.
T Consensus 93 ~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 93 KHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp SEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred cEEeccCCc-cccccchhhhccCCcceEEEecCcc
Confidence 888888773 554 45666677888888887754
No 110
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.36 E-value=0.00032 Score=54.09 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=8.2
Q ss_pred CCCCCCceeeeccc
Q 031657 5 GKLPSLEILRIEEM 18 (155)
Q Consensus 5 ~~L~~L~~L~i~~~ 18 (155)
+.+++|++|.++++
T Consensus 118 ~~l~~L~~L~Ls~N 131 (312)
T 1wwl_A 118 ATGPDLNILNLRNV 131 (312)
T ss_dssp CCSCCCSEEEEESC
T ss_pred hcCCCccEEEccCC
Confidence 55566666666554
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.35 E-value=0.0031 Score=46.24 Aligned_cols=105 Identities=10% Similarity=0.126 Sum_probs=57.2
Q ss_pred CCceeeecccccceeeCc-c-cccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcc
Q 031657 9 SLEILRIEEMVSVKMVGD-E-FLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQV 86 (155)
Q Consensus 9 ~L~~L~i~~~~~l~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L 86 (155)
.+++|.++++ .+..++. + +.....+..+.+.++ .++......+..+++|++|++++. .+..++... ...+++|
T Consensus 33 ~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L 107 (220)
T 2v70_A 33 YTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-RLENVQHKM--FKGLESL 107 (220)
T ss_dssp TCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGG--GTTCSSC
T ss_pred CCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-ccCccCHhH--hcCCcCC
Confidence 5677777765 3555532 2 212222223333222 122222223556777777777664 334443221 1157788
Q ss_pred cEEeecCCccCcCC-CcCCCCCCCcCeEEEecCc
Q 031657 87 KSLSIFFCEKLKSL-PDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 87 ~~L~i~~C~~L~~l-p~~~~~l~~L~~L~i~~c~ 119 (155)
+.|.+.++ ++..+ |..+..+++|+.|.++++.
T Consensus 108 ~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 108 KTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQ 140 (220)
T ss_dssp CEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred CEEECCCC-cCCeECHhHcCCCccCCEEECCCCc
Confidence 88888776 46655 4566678888888887653
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.35 E-value=0.00062 Score=57.30 Aligned_cols=91 Identities=9% Similarity=0.025 Sum_probs=65.3
Q ss_pred ccCCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCcchhhhhccCCCCC
Q 031657 53 VVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVPIVEENFKKDTGKD 132 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 132 (155)
+..+++|+.|.+++. .+..++...+ .+++|+.|.+..+ +++.+| .+.++++|+.|.++++. +.... ....
T Consensus 459 ~~~l~~L~~L~Ls~N-~l~~lp~~~~---~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N~-l~~~~---~p~~ 528 (567)
T 1dce_A 459 LEQLLLVTHLDLSHN-RLRALPPALA---ALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNR-LQQSA---AIQP 528 (567)
T ss_dssp GGGGTTCCEEECCSS-CCCCCCGGGG---GCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSC-CCSSS---TTGG
T ss_pred ccccccCcEeecCcc-cccccchhhh---cCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCCC-CCCCC---CcHH
Confidence 678899999999875 5667765554 7999999999987 688898 77789999999998864 21111 0122
Q ss_pred cCcccccCeeEecceeccCCC
Q 031657 133 WSKISHIPNILISRRYEQGGP 153 (155)
Q Consensus 133 w~~i~~i~~i~~~~~~~~~~~ 153 (155)
...+..+..+.+.+..+.+.|
T Consensus 529 l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 529 LVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp GGGCTTCCEEECTTSGGGGSS
T ss_pred HhcCCCCCEEEecCCcCCCCc
Confidence 344556666777777666655
No 113
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.33 E-value=0.0042 Score=43.60 Aligned_cols=129 Identities=15% Similarity=0.140 Sum_probs=75.2
Q ss_pred CceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcccEE
Q 031657 10 LEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSL 89 (155)
Q Consensus 10 L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L 89 (155)
.+.+.+.+. .+..++.... ..+..+.+.++ .++..+......+++|++|++.+. ++..++...- ..+++|+.|
T Consensus 9 ~~~l~~~~~-~l~~~p~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPTGIP--SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVF--DKLTKLTIL 81 (177)
T ss_dssp TTEEECCSS-CCSSCCTTCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTT--TTCTTCCEE
T ss_pred CCEEEecCC-CCccCCCCCC--CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeChhHc--cCCCccCEE
Confidence 345555543 3555554332 12333444433 233333333567899999999875 5666554321 268899999
Q ss_pred eecCCccCcCCCcC-CCCCCCcCeEEEecCcchhhhhccCCCCCcCcccccCeeEecceeccC
Q 031657 90 SIFFCEKLKSLPDQ-LLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISRRYEQG 151 (155)
Q Consensus 90 ~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~i~~~~~~~~~ 151 (155)
.+..+ +++.+|.. +.++++|+.|.++++. +.... ...+..+.++..+.+.+..+.+
T Consensus 82 ~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~----~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 82 YLHEN-KLQSLPNGVFDKLTQLKELALDTNQ-LKSVP----DGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCC----TTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCCC-CccccCHHHhhCCcccCEEECcCCc-ceEeC----HHHhcCCcccCEEEecCCCeec
Confidence 99887 68888765 4678999999998764 22111 1113345566666666554443
No 114
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.10 E-value=0.00049 Score=53.14 Aligned_cols=35 Identities=11% Similarity=0.196 Sum_probs=19.2
Q ss_pred CCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657 83 MPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV 118 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c 118 (155)
+++|+.|.+..+ +++.+|..+..+++|+.|+++++
T Consensus 190 l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 190 FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp CTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS
T ss_pred cccCCEEECCCC-cCCcchhhhcccCcccEEECcCC
Confidence 555555555554 45555554445556666665554
No 115
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.09 E-value=5e-05 Score=55.00 Aligned_cols=88 Identities=6% Similarity=0.089 Sum_probs=49.2
Q ss_pred CCceeeecccccceeeCcccc-cCcccccccccCccccCCCCCCcccCC----CCcceeeccCcccCcccccCCCccccC
Q 031657 9 SLEILRIEEMVSVKMVGDEFL-GIGICDHNHIHGTFSSSSSSSSSVVAF----PKLEKLDLGIMLQLEEWDFGKEDITIM 83 (155)
Q Consensus 9 ~L~~L~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f----~~L~~L~l~~~~~L~~~~~~~~~~~~~ 83 (155)
.|++|.+++|. +...+-... +...+..+.+.+|..++-..-..+..+ ++|++|++++|+++..--... ...+
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~--L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA--LHHF 138 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH--GGGC
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH--HhcC
Confidence 57777777774 332211111 111223334444443322110012222 479999999999887532111 1268
Q ss_pred CcccEEeecCCccCcC
Q 031657 84 PQVKSLSIFFCEKLKS 99 (155)
Q Consensus 84 p~L~~L~i~~C~~L~~ 99 (155)
++|+.|.+.+|++++.
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 9999999999998874
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.07 E-value=0.0095 Score=42.56 Aligned_cols=125 Identities=14% Similarity=0.137 Sum_probs=72.2
Q ss_pred ceeeecccccceeeCcccccCcccccccccCccccCCCCCC-cccCCCCcceeeccCcccCcccc-cCCCccccCCcccE
Q 031657 11 EILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSS-SVVAFPKLEKLDLGIMLQLEEWD-FGKEDITIMPQVKS 88 (155)
Q Consensus 11 ~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~L~~L~l~~~~~L~~~~-~~~~~~~~~p~L~~ 88 (155)
+.+.+++. .+..+|..+.. .+..+.+.+. .+...+.. ....+++|++|++++. .+..+. .... .+++|+.
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFE---GASHIQE 82 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTT---TCTTCCE
T ss_pred CEEEcCCC-CcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcC---CcccCCE
Confidence 56666654 46666654432 2233333333 23333322 2567899999999875 455543 2222 6889999
Q ss_pred EeecCCccCcCCCc-CCCCCCCcCeEEEecCcchhhhhccCCCCCcCcccccCeeEecceec
Q 031657 89 LSIFFCEKLKSLPD-QLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISRRYE 149 (155)
Q Consensus 89 L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~i~~~~~~~ 149 (155)
|.+..+ +++.++. .+.++++|+.|.+++.. +.... ...+..+.++..+.+.+..+
T Consensus 83 L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~----~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 83 LQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQ-ISCVM----PGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp EECCSC-CCCEECSSSSTTCTTCCEEECCSSC-CCEEC----TTSSTTCTTCCEEECTTCCB
T ss_pred EECCCC-cCCccCHHHhcCCCCCCEEECCCCc-CCeeC----HHHhhcCCCCCEEEeCCCCc
Confidence 999887 5777665 46679999999998764 11111 11233444555555554443
No 117
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.04 E-value=0.0073 Score=51.42 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=6.5
Q ss_pred CCCCceeeeccc
Q 031657 7 LPSLEILRIEEM 18 (155)
Q Consensus 7 L~~L~~L~i~~~ 18 (155)
+++|++|.++++
T Consensus 80 l~~L~~L~Ls~N 91 (622)
T 3g06_A 80 PPELRTLEVSGN 91 (622)
T ss_dssp CTTCCEEEECSC
T ss_pred CCCCCEEEcCCC
Confidence 455555555554
No 118
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.99 E-value=0.0021 Score=54.75 Aligned_cols=56 Identities=20% Similarity=0.331 Sum_probs=38.1
Q ss_pred CCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 56 FPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 56 f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
+++|+.|.++++ ++..++. .+++|+.|.+.+| +++.+|..+.++++|+.|.+++++
T Consensus 240 l~~L~~L~Ls~N-~L~~lp~------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 240 PSELKELMVSGN-RLTSLPM------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCcCcEEECCCC-CCCcCCc------ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 455555555543 3444332 3677888888877 677888877778888888888876
No 119
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.90 E-value=0.0038 Score=50.88 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=54.3
Q ss_pred CCCCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccc
Q 031657 2 PPLGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDIT 81 (155)
Q Consensus 2 p~l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~ 81 (155)
|.++.+++|++|.+.++. +..++... .....+.+.++ .++..+ ....+++|++|++++. .+..++.
T Consensus 189 ~~~~~l~~L~~L~l~~N~-l~~l~~~~---~~L~~L~l~~n-~l~~lp--~~~~l~~L~~L~l~~N-~l~~l~~------ 254 (454)
T 1jl5_A 189 PELQNLPFLTAIYADNNS-LKKLPDLP---LSLESIVAGNN-ILEELP--ELQNLPFLTTIYADNN-LLKTLPD------ 254 (454)
T ss_dssp CCCTTCTTCCEEECCSSC-CSSCCCCC---TTCCEEECCSS-CCSSCC--CCTTCTTCCEEECCSS-CCSSCCS------
T ss_pred ccccCCCCCCEEECCCCc-CCcCCCCc---CcccEEECcCC-cCCccc--ccCCCCCCCEEECCCC-cCCcccc------
Confidence 445666677777666652 33333211 12223333333 222333 1456777777777663 3333331
Q ss_pred cCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 82 IMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
.+++|+.|.+.++ ++..+|.. +++|+.|+++++.
T Consensus 255 ~~~~L~~L~l~~N-~l~~l~~~---~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 255 LPPSLEALNVRDN-YLTDLPEL---PQSLTFLDVSENI 288 (454)
T ss_dssp CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC
T ss_pred cccccCEEECCCC-cccccCcc---cCcCCEEECcCCc
Confidence 3567888887776 46666654 4677777777653
No 120
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.87 E-value=0.00097 Score=54.84 Aligned_cols=35 Identities=11% Similarity=0.196 Sum_probs=18.3
Q ss_pred CCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657 83 MPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV 118 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c 118 (155)
+++|+.|.+.++ ++..+|..+..+++|+.|+++++
T Consensus 190 l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 190 FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp CTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS
T ss_pred CCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC
Confidence 455555555554 35555544444555555555554
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.86 E-value=1.1e-05 Score=58.43 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=61.2
Q ss_pred CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM 83 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~ 83 (155)
++.+++|++|.++++ .+..++ .+.....+..+++.++ .++..+. ....+++|+.|.+.++ .+..++. ...+
T Consensus 44 ~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~-~~~~~~~L~~L~L~~N-~l~~l~~----~~~l 114 (198)
T 1ds9_A 44 LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIEN-LDAVADTLEELWISYN-QIASLSG----IEKL 114 (198)
T ss_dssp HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSS-HHHHHHHCSEEEEEEE-ECCCHHH----HHHH
T ss_pred HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-Ccccccc-hhhcCCcCCEEECcCC-cCCcCCc----cccC
Confidence 456778888888776 355554 2222222223333332 1222221 1234567777777664 4444441 1257
Q ss_pred CcccEEeecCCccCcCCCc--CCCCCCCcCeEEEecCc
Q 031657 84 PQVKSLSIFFCEKLKSLPD--QLLRSTTLESLEIADVP 119 (155)
Q Consensus 84 p~L~~L~i~~C~~L~~lp~--~~~~l~~L~~L~i~~c~ 119 (155)
++|+.|.+.++ ++..++. .+..+++|+.|.+++++
T Consensus 115 ~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 115 VNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 88888888876 4666554 45668899999998875
No 122
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=96.75 E-value=0.0017 Score=49.81 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=18.6
Q ss_pred CCcccEEeecCCccCcCC-CcCCCCC---CCcCeEEEecCc
Q 031657 83 MPQVKSLSIFFCEKLKSL-PDQLLRS---TTLESLEIADVP 119 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~l-p~~~~~l---~~L~~L~i~~c~ 119 (155)
+++|+.|.+..+ ++..+ |..+..+ ++|++|.++++.
T Consensus 223 l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 223 GVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAG 262 (310)
T ss_dssp TCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSC
T ss_pred CCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCC
Confidence 456666666554 34433 4443333 466666665543
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.62 E-value=0.0024 Score=55.17 Aligned_cols=87 Identities=10% Similarity=-0.046 Sum_probs=62.5
Q ss_pred CCCCCCCceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccC
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIM 83 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~ 83 (155)
+..|++|++|.|+++ .+..++..+.....+..+.+.++. ++.++. ++..+++|++|.+.+. .+..++...+ .+
T Consensus 243 ~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~-~~~~l~~L~~L~L~~N-~l~~lp~~~~---~l 315 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPA-ELGSCFQLKYFYFFDN-MVTTLPWEFG---NL 315 (727)
T ss_dssp GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCS-SGGGGTTCSEEECCSS-CCCCCCSSTT---SC
T ss_pred hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccCh-hhcCCCCCCEEECCCC-CCCccChhhh---cC
Confidence 557899999999987 566787766554444555555543 334443 2678899999999886 5777776655 79
Q ss_pred CcccEEeecCCccCc
Q 031657 84 PQVKSLSIFFCEKLK 98 (155)
Q Consensus 84 p~L~~L~i~~C~~L~ 98 (155)
++|+.|.+..++ +.
T Consensus 316 ~~L~~L~L~~N~-l~ 329 (727)
T 4b8c_D 316 CNLQFLGVEGNP-LE 329 (727)
T ss_dssp TTCCCEECTTSC-CC
T ss_pred CCccEEeCCCCc-cC
Confidence 999999998874 44
No 124
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=96.61 E-value=0.0042 Score=47.69 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=55.8
Q ss_pred CCCCCceeeecccccceeeCccc--ccCcccccccccCccccCCCCCCcccCC-----CCcceeeccCcccCcccc-cCC
Q 031657 6 KLPSLEILRIEEMVSVKMVGDEF--LGIGICDHNHIHGTFSSSSSSSSSVVAF-----PKLEKLDLGIMLQLEEWD-FGK 77 (155)
Q Consensus 6 ~L~~L~~L~i~~~~~l~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f-----~~L~~L~l~~~~~L~~~~-~~~ 77 (155)
.+++|++|.++++.--..++..+ .....+..+++.++. ++..+ .....+ ++|++|++++.. +..++ ...
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRD-AWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQV 169 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSS-SHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-Ccchh-HHHHHHHHhhcCCCcEEEeeCCC-CccchHHHh
Confidence 57899999998874222344433 122222333333321 11111 112222 677777776643 33333 222
Q ss_pred CccccCCcccEEeecCCccCcC--CCcCC--CCCCCcCeEEEecCc
Q 031657 78 EDITIMPQVKSLSIFFCEKLKS--LPDQL--LRSTTLESLEIADVP 119 (155)
Q Consensus 78 ~~~~~~p~L~~L~i~~C~~L~~--lp~~~--~~l~~L~~L~i~~c~ 119 (155)
. .+++|+.|.+.++.-... ++..+ .++++|++|.++++.
T Consensus 170 ~---~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 170 R---VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212 (312)
T ss_dssp C---CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred c---cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence 2 577888888877642222 23222 457788888887765
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.59 E-value=0.0066 Score=51.22 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=26.4
Q ss_pred cEEeecCCccCcCCCcCCCCCCCcCeEEEecCc
Q 031657 87 KSLSIFFCEKLKSLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 87 ~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c~ 119 (155)
+.|.+.++ +++.+|..+.++++|+.|.+++++
T Consensus 210 ~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 210 IFFRCREN-RITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp EEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred eEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence 88888876 688888877778889999988876
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.51 E-value=0.015 Score=49.03 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=16.8
Q ss_pred CCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657 83 MPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV 118 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c 118 (155)
+++|+.|.+.++ ++..+|. +. ++|+.|.++++
T Consensus 159 l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 159 PTSLEVLSVRNN-QLTFLPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp CTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCSS
T ss_pred CCCcCEEECCCC-CCCCcch-hh--CCCCEEECcCC
Confidence 455556655554 3555555 22 55555555544
No 127
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.51 E-value=0.0021 Score=53.09 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=28.9
Q ss_pred cCCcccEEeecCCccCcC-CCcCCCCCCCcCeEEEecCcc
Q 031657 82 IMPQVKSLSIFFCEKLKS-LPDQLLRSTTLESLEIADVPI 120 (155)
Q Consensus 82 ~~p~L~~L~i~~C~~L~~-lp~~~~~l~~L~~L~i~~c~~ 120 (155)
.+++|+.|.+.+|+.-.. +.....++++|+.|++++|+.
T Consensus 479 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 479 GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 489999999999975221 222334578999999999984
No 128
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.31 E-value=0.00065 Score=56.22 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=56.4
Q ss_pred CCCCCceeeeccccccee--eCcccccCcccccccccCccccCCCCCC----cccCCCCcceeeccCcc-cCc--ccccC
Q 031657 6 KLPSLEILRIEEMVSVKM--VGDEFLGIGICDHNHIHGTFSSSSSSSS----SVVAFPKLEKLDLGIML-QLE--EWDFG 76 (155)
Q Consensus 6 ~L~~L~~L~i~~~~~l~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~f~~L~~L~l~~~~-~L~--~~~~~ 76 (155)
.+++|++|.+.+|..+.. ++.-......+..+.+.+|. ++..... -...+++|++|.+.++. .+. .+..-
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l 206 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence 478899999988864433 11100011122233344332 1110000 01246678888777664 111 11100
Q ss_pred CCccccCCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657 77 KEDITIMPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV 118 (155)
Q Consensus 77 ~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c 118 (155)
...+++|+.|.+..|..+..++..+.++++|++|.+..|
T Consensus 207 ---~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 207 ---VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp ---HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred ---HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 014688888888888666666655556777777765544
No 129
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.15 E-value=0.052 Score=38.16 Aligned_cols=86 Identities=14% Similarity=0.130 Sum_probs=56.8
Q ss_pred CCCcceeeccCcccCccccc-CCCccccCCcccEEeecCCccCcCCCcCC-CCCCCcCeEEEecCcchhhhhccCCCCCc
Q 031657 56 FPKLEKLDLGIMLQLEEWDF-GKEDITIMPQVKSLSIFFCEKLKSLPDQL-LRSTTLESLEIADVPIVEENFKKDTGKDW 133 (155)
Q Consensus 56 f~~L~~L~l~~~~~L~~~~~-~~~~~~~~p~L~~L~i~~C~~L~~lp~~~-~~l~~L~~L~i~~c~~l~~~~~~~~~~~w 133 (155)
+++|+.|++++. +++.++. ... .+++|+.|.+... +++.+|... .++++|+.|.+++.. +.... ...+
T Consensus 32 ~~~L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~----~~~~ 101 (174)
T 2r9u_A 32 PTDKQRLWLNNN-QITKLEPGVFD---HLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH-LKSIP----RGAF 101 (174)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCC----TTTT
T ss_pred CCCCcEEEeCCC-CccccCHHHhc---CCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc-cceeC----HHHh
Confidence 478999999874 3555532 222 6899999999987 799998864 679999999998753 22111 1113
Q ss_pred CcccccCeeEecceeccC
Q 031657 134 SKISHIPNILISRRYEQG 151 (155)
Q Consensus 134 ~~i~~i~~i~~~~~~~~~ 151 (155)
..+..+..+.+.+..+..
T Consensus 102 ~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 102 DNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TTCTTCSEEECCSSCBCT
T ss_pred ccccCCCEEEeCCCCccc
Confidence 344555555555554443
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.95 E-value=0.074 Score=37.09 Aligned_cols=86 Identities=16% Similarity=0.137 Sum_probs=57.2
Q ss_pred CCCcceeeccCcccCcccccC-CCccccCCcccEEeecCCccCcCCCcCC-CCCCCcCeEEEecCcchhhhhccCCCCCc
Q 031657 56 FPKLEKLDLGIMLQLEEWDFG-KEDITIMPQVKSLSIFFCEKLKSLPDQL-LRSTTLESLEIADVPIVEENFKKDTGKDW 133 (155)
Q Consensus 56 f~~L~~L~l~~~~~L~~~~~~-~~~~~~~p~L~~L~i~~C~~L~~lp~~~-~~l~~L~~L~i~~c~~l~~~~~~~~~~~w 133 (155)
+++|++|.+++. +++.++.. .. .+++|+.|.+... +++.+|... .++++|+.|.+++.. +.... ...+
T Consensus 29 ~~~l~~L~L~~N-~i~~~~~~~~~---~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~----~~~~ 98 (170)
T 3g39_A 29 PTTTQVLYLYDN-QITKLEPGVFD---RLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIP----RGAF 98 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTT---TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCC----TTTT
T ss_pred CCCCcEEEcCCC-cCCccChhhhc---CcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCc-cCEeC----HHHh
Confidence 578999999774 45555322 22 6899999999987 699988864 679999999998754 22111 1123
Q ss_pred CcccccCeeEecceeccC
Q 031657 134 SKISHIPNILISRRYEQG 151 (155)
Q Consensus 134 ~~i~~i~~i~~~~~~~~~ 151 (155)
..+..+..+.+.+..+..
T Consensus 99 ~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 99 DNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TTCTTCCEEECCSSCBCT
T ss_pred cCCCCCCEEEeCCCCCCC
Confidence 445556666665554443
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=95.91 E-value=0.068 Score=38.13 Aligned_cols=124 Identities=12% Similarity=0.200 Sum_probs=69.6
Q ss_pred ceeeecccccceeeCcccccCcccccccccCccccCCCCCCcccCCCCcceeeccCcccCcccccCCCccccCCcccEEe
Q 031657 11 EILRIEEMVSVKMVGDEFLGIGICDHNHIHGTFSSSSSSSSSVVAFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLS 90 (155)
Q Consensus 11 ~~L~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~ 90 (155)
+.+.+++. .+..+|.++.. .+..+.+.+. .++..+ .....+++|+.|++++. .+..++... ...+++|+.|.
T Consensus 13 ~~l~~~~~-~l~~ip~~~~~--~l~~L~L~~n-~i~~ip-~~~~~l~~L~~L~Ls~N-~i~~i~~~~--f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIPR--DVTELYLDGN-QFTLVP-KELSNYKHLTLIDLSNN-RISTLSNQS--FSNMTQLLTLI 84 (193)
T ss_dssp TEEECTTS-CCSSCCSCCCT--TCCEEECCSS-CCCSCC-GGGGGCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEE
T ss_pred CEEEcCCC-CCCcCCCCCCC--CCCEEECCCC-cCchhH-HHhhcccCCCEEECCCC-cCCEeCHhH--ccCCCCCCEEE
Confidence 44555543 46666654321 2233333322 223333 23667888888888764 355544321 12688999999
Q ss_pred ecCCccCcCCCc-CCCCCCCcCeEEEecCcchhhhhccCCCCCcCcccccCeeEeccee
Q 031657 91 IFFCEKLKSLPD-QLLRSTTLESLEIADVPIVEENFKKDTGKDWSKISHIPNILISRRY 148 (155)
Q Consensus 91 i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~i~~~~~~ 148 (155)
+.++ +++.++. .+..+++|+.|.+++.. +... ....+..+..+..+.+.+..
T Consensus 85 Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~----~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 85 LSYN-RLRCIPPRTFDGLKSLRLLSLHGND-ISVV----PEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCSS-CCCBCCTTTTTTCTTCCEEECCSSC-CCBC----CTTTTTTCTTCCEEECCSSC
T ss_pred CCCC-ccCEeCHHHhCCCCCCCEEECCCCC-CCee----ChhhhhcCccccEEEeCCCC
Confidence 9886 5777765 46678999999988754 2111 11123345556666665543
No 132
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=95.89 E-value=0.019 Score=43.81 Aligned_cols=61 Identities=15% Similarity=0.112 Sum_probs=36.8
Q ss_pred CCCCcceeeccCcccCcccc-cCCCccccCCcccEEeecCCccCc--CCC--cCCCCCCCcCeEEEecCc
Q 031657 55 AFPKLEKLDLGIMLQLEEWD-FGKEDITIMPQVKSLSIFFCEKLK--SLP--DQLLRSTTLESLEIADVP 119 (155)
Q Consensus 55 ~f~~L~~L~l~~~~~L~~~~-~~~~~~~~~p~L~~L~i~~C~~L~--~lp--~~~~~l~~L~~L~i~~c~ 119 (155)
.+++|++|.+.++. +..++ .... .+++|+.|.+..+.-.. .++ ....++++|++|.+++|.
T Consensus 143 ~~~~L~~L~Ls~n~-l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 143 LKPGLKVLSIAQAH-SPAFSCEQVR---AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp BCSCCCEEEEECCS-SCCCCTTSCC---CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred hccCCCEEEeeCCC-cchhhHHHhc---cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence 47777777776654 23332 2222 57888888888774221 122 223457888888888775
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=95.48 E-value=0.00057 Score=54.02 Aligned_cols=15 Identities=13% Similarity=-0.011 Sum_probs=10.6
Q ss_pred CCCCCCCceeeeccc
Q 031657 4 LGKLPSLEILRIEEM 18 (155)
Q Consensus 4 l~~L~~L~~L~i~~~ 18 (155)
+.++++|++|.++++
T Consensus 28 l~~~~~L~~L~L~~n 42 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGN 42 (386)
T ss_dssp HHHCSCCCEEECTTS
T ss_pred HhcCCCccEEECCCC
Confidence 345677888888776
No 134
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.33 E-value=0.028 Score=43.44 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=50.4
Q ss_pred ccCCCCcceeeccCcccCcccccC-CCccccCCcccEEeecCCccCcCCCcC-CCCCCCcCeEEEecCc
Q 031657 53 VVAFPKLEKLDLGIMLQLEEWDFG-KEDITIMPQVKSLSIFFCEKLKSLPDQ-LLRSTTLESLEIADVP 119 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~~~L~~~~~~-~~~~~~~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~~L~i~~c~ 119 (155)
+..+++|+.|+|++...+..++.. .. .+++|+.|.+... +|..++.. +.++++|+.|++++..
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~---~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLR---GLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSC---SCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhc---cccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc
Confidence 556788999999877788887743 22 6999999999997 68887764 5679999999998743
No 135
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.29 E-value=0.0024 Score=50.86 Aligned_cols=62 Identities=19% Similarity=0.200 Sum_probs=41.2
Q ss_pred cCCCCcceeeccCcccCccc---ccCCCccccCCcccEEeecCCccCcC-----CCcCCCCCCCcCeEEEecCc
Q 031657 54 VAFPKLEKLDLGIMLQLEEW---DFGKEDITIMPQVKSLSIFFCEKLKS-----LPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 54 ~~f~~L~~L~l~~~~~L~~~---~~~~~~~~~~p~L~~L~i~~C~~L~~-----lp~~~~~l~~L~~L~i~~c~ 119 (155)
..||+|+.|.+.+|.--... ..... .+|.|+.|.+..+ .+.. ++.++.++++|+.|+++.|.
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~---~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESD---ILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCS---SGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCc---cCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 35899999988775432111 11112 5889999999654 4543 45555568899999998876
No 136
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.04 E-value=0.0031 Score=52.20 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=39.3
Q ss_pred CCCCcceeeccCcccCcc--cccCCCccccCCcccEEeecCCccCcC--CCcCCCCCCCcCeEEEecCc
Q 031657 55 AFPKLEKLDLGIMLQLEE--WDFGKEDITIMPQVKSLSIFFCEKLKS--LPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 55 ~f~~L~~L~l~~~~~L~~--~~~~~~~~~~~p~L~~L~i~~C~~L~~--lp~~~~~l~~L~~L~i~~c~ 119 (155)
.+++|+.|.+.++. +.. +.... ..+++|+.|.+.+|+ +.. ++....++++|+.|++++|.
T Consensus 461 ~~~~L~~L~L~~n~-l~~~~~~~~~---~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 461 YSPNVRWMLLGYVG-ESDEGLMEFS---RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SCTTCCEEEECSCC-SSHHHHHHHH---TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred hCccceEeeccCCC-CCHHHHHHHH---hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 36777777776654 321 11111 157889999999997 542 44444457899999999987
No 137
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=94.76 E-value=0.0019 Score=50.99 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=22.7
Q ss_pred CCcccEEeecCCccCcC-----CCcCC-CCCCCcCeEEEecCc
Q 031657 83 MPQVKSLSIFFCEKLKS-----LPDQL-LRSTTLESLEIADVP 119 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~-----lp~~~-~~l~~L~~L~i~~c~ 119 (155)
+++|+.|.+..|. +.. +|..+ .++++|+.|.+++++
T Consensus 273 ~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 273 NIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 6677777777663 444 55554 346777777776654
No 138
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.62 E-value=0.077 Score=42.10 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=9.5
Q ss_pred CCCCcCeEEEecCc
Q 031657 106 RSTTLESLEIADVP 119 (155)
Q Consensus 106 ~l~~L~~L~i~~c~ 119 (155)
.+++|+.|.+.+|.
T Consensus 250 ~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 250 RFPNLKWLGIVDAE 263 (362)
T ss_dssp TCTTCCEEEEESCT
T ss_pred CCCCcCEEeCCCCC
Confidence 36777777777665
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.51 E-value=0.23 Score=38.09 Aligned_cols=56 Identities=11% Similarity=0.029 Sum_probs=31.0
Q ss_pred CCCCcceeeccCcccCcccccCCCccccCCccc-EEeecCCccCcCCCc-CCCCCCCcCeEEEe
Q 031657 55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVK-SLSIFFCEKLKSLPD-QLLRSTTLESLEIA 116 (155)
Q Consensus 55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~-~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~ 116 (155)
.+++|+++.+.+ +++.+....- ..+++|+ .+.+.. +++.++. ....+++|+.+.+.
T Consensus 248 ~~~~L~~l~l~~--ni~~I~~~aF--~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 248 QKKYLLKIKLPH--NLKTIGQRVF--SNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp TCTTCCEEECCT--TCCEECTTTT--TTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEEC
T ss_pred CCCCCCEEECCc--ccceehHHHh--hCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeC
Confidence 456677776654 3555543321 1355566 666655 5666553 34456667776654
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=94.34 E-value=0.0061 Score=50.37 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=8.6
Q ss_pred CCCCCCCcCeEEEecC
Q 031657 103 QLLRSTTLESLEIADV 118 (155)
Q Consensus 103 ~~~~l~~L~~L~i~~c 118 (155)
.+..+++|+.|.++++
T Consensus 265 ~l~~~~~L~~L~l~~~ 280 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYM 280 (592)
T ss_dssp CCCCCTTCCEEEETTC
T ss_pred HhhccccccccCcccc
Confidence 3444556666666543
No 141
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=94.01 E-value=0.013 Score=46.80 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=8.1
Q ss_pred CCCCCCCceeeeccc
Q 031657 4 LGKLPSLEILRIEEM 18 (155)
Q Consensus 4 l~~L~~L~~L~i~~~ 18 (155)
++.+++|++|.++++
T Consensus 109 l~~~~~L~~L~Ls~n 123 (461)
T 1z7x_W 109 LRTLPTLQELHLSDN 123 (461)
T ss_dssp TTSCTTCCEEECCSS
T ss_pred HccCCceeEEECCCC
Confidence 345555555555554
No 142
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=93.17 E-value=0.018 Score=45.06 Aligned_cols=58 Identities=17% Similarity=0.049 Sum_probs=36.9
Q ss_pred CCcceeeccCcccCcc-----cccCCCcccc-CCcccEEeecCCccCcCCC-----cCCCCCCCcCeEEEecCc
Q 031657 57 PKLEKLDLGIMLQLEE-----WDFGKEDITI-MPQVKSLSIFFCEKLKSLP-----DQLLRSTTLESLEIADVP 119 (155)
Q Consensus 57 ~~L~~L~l~~~~~L~~-----~~~~~~~~~~-~p~L~~L~i~~C~~L~~lp-----~~~~~l~~L~~L~i~~c~ 119 (155)
++|++|+++++. +.. ++... .. .++|+.|.+..+ .+...+ .....+++|+.|.+++|.
T Consensus 196 ~~L~~L~Ls~N~-i~~~~~~~l~~~l---~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 196 ASVTSLDLSANL-LGLKSYAELAYIF---SSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TTCCEEECTTSC-GGGSCHHHHHHHH---HHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCCCEEECCCCC-CChhHHHHHHHHH---hcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 488888887754 332 11111 12 358999999887 465543 234557889999998876
No 143
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=93.09 E-value=0.0078 Score=48.13 Aligned_cols=63 Identities=19% Similarity=0.168 Sum_probs=41.5
Q ss_pred CCCCcceeeccCcccCcccccC-CCc--cccCCcccEEeecCCccCc-----CCCcCCCCCCCcCeEEEecCc
Q 031657 55 AFPKLEKLDLGIMLQLEEWDFG-KED--ITIMPQVKSLSIFFCEKLK-----SLPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 55 ~f~~L~~L~l~~~~~L~~~~~~-~~~--~~~~p~L~~L~i~~C~~L~-----~lp~~~~~l~~L~~L~i~~c~ 119 (155)
.+++|++|+++++ .+...... ..+ ....++|+.|.+.+| ++. .+|..+.++++|++|++++++
T Consensus 339 ~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 339 QNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred hCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 4578888888776 33322110 000 002678999999998 465 567766678999999999886
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=92.39 E-value=0.65 Score=35.50 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=18.8
Q ss_pred CCcccEEeecCCccCcCCCcC-CCCCCCcC-eEEEec
Q 031657 83 MPQVKSLSIFFCEKLKSLPDQ-LLRSTTLE-SLEIAD 117 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~~-~~~l~~L~-~L~i~~ 117 (155)
+++|+.+.+.. +++.++.+ ...+.+|+ .+.+.+
T Consensus 249 ~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 249 KKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp CTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT
T ss_pred CCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc
Confidence 45566666544 25555543 34566676 776654
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=92.02 E-value=0.0095 Score=42.61 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=15.8
Q ss_pred CCcccEEeecCCccCcCCCcCCCCCCCcCeEEEecC
Q 031657 83 MPQVKSLSIFFCEKLKSLPDQLLRSTTLESLEIADV 118 (155)
Q Consensus 83 ~p~L~~L~i~~C~~L~~lp~~~~~l~~L~~L~i~~c 118 (155)
+++|+.|.+..+ ++..+| .+.++++|+.|+++++
T Consensus 92 ~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 92 ADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSNN 125 (198)
T ss_dssp HHHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEESEE
T ss_pred CCcCCEEECcCC-cCCcCC-ccccCCCCCEEECCCC
Confidence 345555555544 344443 2233455555555543
No 146
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=91.36 E-value=0.038 Score=43.17 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=35.2
Q ss_pred CCcceeeccCcccCcccccC-CCc-cccC-CcccEEeecCCccCcCCCc-----CCCC-CCCcCeEEEecCc
Q 031657 57 PKLEKLDLGIMLQLEEWDFG-KED-ITIM-PQVKSLSIFFCEKLKSLPD-----QLLR-STTLESLEIADVP 119 (155)
Q Consensus 57 ~~L~~L~l~~~~~L~~~~~~-~~~-~~~~-p~L~~L~i~~C~~L~~lp~-----~~~~-l~~L~~L~i~~c~ 119 (155)
++|++|+++++. +...... ... ...+ ++|+.|.+..|. +...+. .+.. ..+|++|.+++|.
T Consensus 80 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 80 ANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp TTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred CCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 778888877754 3221110 000 1123 788888888874 655443 1223 2588999988875
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=90.76 E-value=1.4 Score=35.05 Aligned_cols=22 Identities=5% Similarity=-0.010 Sum_probs=10.6
Q ss_pred CCCCCCCceeeecccccceeeCc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGD 26 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~ 26 (155)
+..+++|+.+.+.+. ++..++.
T Consensus 176 F~~c~~L~~l~l~~n-~l~~I~~ 197 (401)
T 4fdw_A 176 FYYCYNLKKADLSKT-KITKLPA 197 (401)
T ss_dssp TTTCTTCCEEECTTS-CCSEECT
T ss_pred hhCcccCCeeecCCC-cceEech
Confidence 344555555555432 3444443
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=88.91 E-value=4 Score=32.40 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=10.3
Q ss_pred CCCCCCCceeeecccccceeeCcc
Q 031657 4 LGKLPSLEILRIEEMVSVKMVGDE 27 (155)
Q Consensus 4 l~~L~~L~~L~i~~~~~l~~l~~~ 27 (155)
+..+++|+.+.+.+ ++..++..
T Consensus 222 F~~~~~L~~l~l~~--~l~~I~~~ 243 (401)
T 4fdw_A 222 FLKTSQLKTIEIPE--NVSTIGQE 243 (401)
T ss_dssp TTTCTTCCCEECCT--TCCEECTT
T ss_pred hhCCCCCCEEecCC--CccCcccc
Confidence 33445555555543 34444433
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=85.96 E-value=0.43 Score=36.28 Aligned_cols=62 Identities=26% Similarity=0.221 Sum_probs=39.6
Q ss_pred CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCcCCCCCC--CcCeEEEecCc
Q 031657 55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPDQLLRST--TLESLEIADVP 119 (155)
Q Consensus 55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~l~--~L~~L~i~~c~ 119 (155)
.|++|++|.+++. ++..+..-......+++|+.|.+... +++.+.. +..+. +|++|.+.+.+
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~-l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE-LDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG-GGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchh-hhhcccCCcceEEccCCc
Confidence 5889999998763 33333211111126999999999774 5666532 22233 89999998877
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=82.31 E-value=0.72 Score=35.02 Aligned_cols=56 Identities=18% Similarity=0.082 Sum_probs=32.3
Q ss_pred cCCCCcceeeccCcccCcccccCCCccccCC--cccEEeecCCccCcCCCc-------CCCCCCCcCeEE
Q 031657 54 VAFPKLEKLDLGIMLQLEEWDFGKEDITIMP--QVKSLSIFFCEKLKSLPD-------QLLRSTTLESLE 114 (155)
Q Consensus 54 ~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p--~L~~L~i~~C~~L~~lp~-------~~~~l~~L~~L~ 114 (155)
..+++|+.|.+++ .++..+.. .. .+. .|+.|.+.+.|--..+|. .+..+++|+.|+
T Consensus 193 ~~l~~L~~L~Ls~-N~i~~~~~-l~---~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 193 QKAPNLKILNLSG-NELKSERE-LD---KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHSTTCCEEECTT-SCCCSGGG-GG---GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhCCCCCEEECCC-CccCCchh-hh---hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 3689999999966 23433311 11 233 899999988763233431 123466666654
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=82.10 E-value=0.11 Score=36.88 Aligned_cols=55 Identities=18% Similarity=0.121 Sum_probs=28.3
Q ss_pred CCCcceeeccCcccCcc-----cccCCCccccCCcccEEeecCCccCcC-----CCcCCCCCCCcCeEEE
Q 031657 56 FPKLEKLDLGIMLQLEE-----WDFGKEDITIMPQVKSLSIFFCEKLKS-----LPDQLLRSTTLESLEI 115 (155)
Q Consensus 56 f~~L~~L~l~~~~~L~~-----~~~~~~~~~~~p~L~~L~i~~C~~L~~-----lp~~~~~l~~L~~L~i 115 (155)
.++|++|+++++. +.. +... ....++|+.|.+..|. +.. +...+...++|++|++
T Consensus 64 ~~~L~~L~Ls~n~-i~~~g~~~l~~~---L~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 64 NTYVKKFSIVGTR-SNDPVAFALAEM---LKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp CCSCCEEECTTSC-CCHHHHHHHHHH---HHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred CCCcCEEECcCCC-CChHHHHHHHHH---HHhCCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEe
Confidence 4667777776643 211 1100 1134567777776663 322 3344444566777777
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=81.12 E-value=0.092 Score=41.61 Aligned_cols=60 Identities=15% Similarity=0.079 Sum_probs=31.1
Q ss_pred CCCCcceeeccCcccCcc-----cccCCCccccCCcccEEeecCCccCcC-----CCcCCCCCCCcCeEEEecCc
Q 031657 55 AFPKLEKLDLGIMLQLEE-----WDFGKEDITIMPQVKSLSIFFCEKLKS-----LPDQLLRSTTLESLEIADVP 119 (155)
Q Consensus 55 ~f~~L~~L~l~~~~~L~~-----~~~~~~~~~~~p~L~~L~i~~C~~L~~-----lp~~~~~l~~L~~L~i~~c~ 119 (155)
..++|++|+++++. +.. +... ....++|+.|.+.+|. +.. +...+...++|++|++++++
T Consensus 181 ~~~~L~~L~Ls~N~-l~~~g~~~L~~~---L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 181 GNTSVTHLSLLHTG-LGDEGLELLAAQ---LDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp TCSSCCEEECTTSS-CHHHHHHHHHHH---GGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred cCCCcCEEeCCCCC-CCcHHHHHHHHH---HhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 45667777776643 221 1111 1135567777777763 332 22233335667777777665
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=58.94 E-value=59 Score=24.98 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=34.0
Q ss_pred CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCc-CCCCCCCcCeEEEecCc
Q 031657 55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPD-QLLRSTTLESLEIADVP 119 (155)
Q Consensus 55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~c~ 119 (155)
...+|+.+.|.+ +++.+....- ....+|+.+.|-. +++.+.. ...++.+|+.+.+.+..
T Consensus 309 ~c~~L~~i~lp~--~v~~I~~~aF--~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 309 GCISLKSIDIPE--GITQILDDAF--AGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCTTCCEEECCT--TCCEECTTTT--TTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCCcCEEEeCC--cccEehHhHh--hCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 445666666632 3444432211 1346778777743 3666654 34568889988887643
No 154
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=57.71 E-value=9.8 Score=25.10 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=11.4
Q ss_pred ccCCCCcceeeccCc
Q 031657 53 VVAFPKLEKLDLGIM 67 (155)
Q Consensus 53 ~~~f~~L~~L~l~~~ 67 (155)
+..+++|+.|.|.+-
T Consensus 51 f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 51 LDALPALRTAHLGAN 65 (130)
T ss_dssp GGGCTTCCEEECCSS
T ss_pred hhhccccCEEEecCC
Confidence 446788999988774
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=48.48 E-value=84 Score=24.10 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=29.3
Q ss_pred CCCCcceeeccCcccCcccccCCCccccCCcccEEeecCCccCcCCCc-CCCCCCCcCeEEEec
Q 031657 55 AFPKLEKLDLGIMLQLEEWDFGKEDITIMPQVKSLSIFFCEKLKSLPD-QLLRSTTLESLEIAD 117 (155)
Q Consensus 55 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~-~~~~l~~L~~L~i~~ 117 (155)
...+|+.+.+.+ +++.+....- ....+|+.+.+-. +++.+.. ....+.+|+++.+..
T Consensus 318 ~c~~L~~i~lp~--~v~~I~~~aF--~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 318 SCTSLVSIDLPY--LVEEIGKRSF--RGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TCTTCCEECCCT--TCCEECTTTT--TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCCCCEEEeCC--cccEEhHHhc--cCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 345566666532 3444432210 1245666666533 3555544 344577888888753
No 156
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens}
Probab=24.68 E-value=1e+02 Score=25.14 Aligned_cols=41 Identities=29% Similarity=0.304 Sum_probs=22.0
Q ss_pred EeecCCccCcCCCcCCCCCCCcCeEE-----EecCcchhhhhccCCCCCcCcccc
Q 031657 89 LSIFFCEKLKSLPDQLLRSTTLESLE-----IADVPIVEENFKKDTGKDWSKISH 138 (155)
Q Consensus 89 L~i~~C~~L~~lp~~~~~l~~L~~L~-----i~~c~~l~~~~~~~~~~~w~~i~~ 138 (155)
|.|...++|+.| + +++|+++. |.+.++|- .. ..-+|..|..
T Consensus 93 L~i~~n~~l~~L--g---l~sL~~I~~G~V~i~~N~~LC---y~-~tI~W~~i~~ 138 (486)
T 2hr7_A 93 LVIFEMVHLKEL--G---LYNLMNITRGSVRIEKNNELC---YL-ATIDWSRILD 138 (486)
T ss_dssp EEEESCTTCCCC--C---CTTCCEECSSEEEEEEETTCC---SC-TTCCGGGTCS
T ss_pred EEEEEcCCcccc--C---CccccccccceEEEecCCCCC---CC-CccCHHHHhC
Confidence 445555666654 2 56777654 55555432 22 3456766653
Done!