BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031658
(155 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 13 NFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDST 72
+ G + VVT+E SGL Y D G G + GQ V HY G+ G++ DS+
Sbjct: 13 GLVPRGSHMTVVTTE------SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSS 66
Query: 73 YLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPV-GPSTFFSAKQFEVF 131
+ P +G ++ G++EG++ M+ GG RR+ IPP+LG G VF
Sbjct: 67 KDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVF 126
Query: 132 DVELLSV 138
+VELL V
Sbjct: 127 EVELLDV 133
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 23 VVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIR 82
VVT+E SGL Y D G G + GQ V HY G+ G++ DS+ + P
Sbjct: 99 VVTTE------SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFV 152
Query: 83 MGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPV-GPSTFFSAKQFEVFDVELLSV 138
+G ++ G++EG++ M+ GG RR+ IPP+LG G + VF+VELL V
Sbjct: 153 LGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELLDV 209
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 23 VVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIR 82
VVT+E SGL Y D G G + GQ V HY G+ G++ DS+ + P
Sbjct: 99 VVTTE------SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFEFV 152
Query: 83 MGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPV-GPSTFFSAKQFEVFDVELLSV 138
+G ++ G++EG++ M+ GG RR+ IPP+LG G VF+VELL V
Sbjct: 153 LGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 7/119 (5%)
Query: 21 VKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPAR 80
+ VVT+E SGL Y D G G + GQ V HY G+ G++ DS+ + P
Sbjct: 5 MTVVTTE------SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFA 58
Query: 81 IRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPV-GPSTFFSAKQFEVFDVELLSV 138
+G ++ G++EG++ M+ GG RR+ IPP+LG G VF+VELL V
Sbjct: 59 FVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 117
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 23 VVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIR 82
VVT+E SGL Y D G G + GQ V HY G+ G++ DS+ + P
Sbjct: 3 VVTTE------SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFV 56
Query: 83 MGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPV-GPSTFFSAKQFEVFDVELLSV 138
+G ++ G++EG++ M+ GG RR+ IPP+LG G VF+VELL V
Sbjct: 57 LGGGHVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 113
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 23 VVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIR 82
VVT+E SGL Y D G G + GQ V HY G+ G++ DS+ + P
Sbjct: 99 VVTTE------SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFV 152
Query: 83 MGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPV-GPSTFFSAKQFEVFDVELLSV 138
+G ++ G++EG++ M+ GG RR+ IPP+LG G VF+VELL V
Sbjct: 153 LGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 23 VVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIR 82
+VT+E SGL Y D G G + GQ V HY G+ G++ DS+ + P
Sbjct: 99 IVTTE------SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFV 152
Query: 83 MGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPV-GPSTFFSAKQFEVFDVELLSV 138
+G ++ G++EG++ M+ GG RR+ IPP+LG G VF+VELL V
Sbjct: 153 LGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 22/147 (14%)
Query: 1 MQKENSAPEGFPNFIREGF--EVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFH 58
M+K+ + E RE F E V TS +GL+Y+ E GKG+ PKD V+ +
Sbjct: 92 MEKDAADNEAKGKEYREKFAKEKGVKTSS------TGLVYQVVEAGKGEAPKDSDTVVVN 145
Query: 59 YIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELG---- 114
Y G G+ D++Y +G P R+ + ++PG+ EG+++++ GGK +++IPPEL
Sbjct: 146 YKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVIPPELAYGKA 203
Query: 115 --PPVGPSTFFSAKQFEVFDVELLSVQ 139
P + P++ VFDVELL V+
Sbjct: 204 GVPGIPPNSTL------VFDVELLDVK 224
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 68/112 (60%), Gaps = 14/112 (12%)
Query: 34 SGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFE 93
+GL+Y+ E GKG+ PKD V+ +Y G G+ D++Y +G P R+ + ++PG+
Sbjct: 121 TGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWT 178
Query: 94 EGIRDMRPGGKRRIIIPPELG------PPVGPSTFFSAKQFEVFDVELLSVQ 139
EG+++++ GGK +++IPPEL P + P++ VFDVELL V+
Sbjct: 179 EGLKNIKKGGKIKLVIPPELAYGKAGVPGIPPNSTL------VFDVELLDVK 224
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 23 VVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIR 82
VVT+E SGL Y D G G + GQ V HY G+ G++ S+ + P
Sbjct: 99 VVTTE------SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFGSSKDRNDPFAFV 152
Query: 83 MGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPV-GPSTFFSAKQFEVFDVELLSV 138
+G ++ G++EG++ M+ GG RR+ IPP+LG G VF+VELL V
Sbjct: 153 LGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 23 VVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIR 82
VVT+E SGL Y D G G + GQ V HY G+ G++ DS+ + P
Sbjct: 3 VVTTE------SGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFV 56
Query: 83 MGTNALVPGFEEGIRDMRPGGKRRIIIPPEL-GPPVGPSTFFSAKQFEVFDVELLSV 138
+G ++ G++EG++ M+ GG RR+ IPP+L G VF+VELL V
Sbjct: 57 LGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGAGGAGGVIPPNATLVFEVELLDV 113
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 24 VTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRM 83
TS ++ SGL + D VG G GQ + HY+G E+G+ DS+Y +G P R+
Sbjct: 2 TTSCEFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRI 61
Query: 84 GTNALVPGFEEGIRD------MRPGGKRRIIIPPEL 113
G ++ G+++GI M GGKR + IPPEL
Sbjct: 62 GVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPEL 97
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 49 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 108
PK GQ + HY G E G+++DS+ + P + +G ++ G+EEG+ M G + ++
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 109 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 139
I P+ G VFDVELL ++
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 49 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 108
PK GQ + HY G E G++ DS+ + P + +G ++ GFEEG+ M G + ++
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFEEGVAQMSVGQRAKLT 75
Query: 109 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 139
I P+ G VFDVELL ++
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 49 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 108
PK GQ + HY G ++G++ DS+ + P + R+G ++ GFEEG M G + ++
Sbjct: 16 PKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLT 75
Query: 109 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 139
P++ G +FDVELL+++
Sbjct: 76 CTPDVAYGATGHPGVIPPNATLIFDVELLNLE 107
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 49 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 108
PK G V HY G E+G++ DS+ +GSP + +G ++ G++ GI + G K R+
Sbjct: 22 PKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLT 81
Query: 109 IP-PELGPPVGPSTFFSAKQFEVFDVELLSVQ 139
IP P P G VFDVELL V
Sbjct: 82 IPGPYAYGPRGFPGLIPPNSTLVFDVELLKVN 113
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 49 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 108
PK GQ + HY G E G+++DS+ + P + +G ++ G+EEG+ M G + ++
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 109 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 139
I P+ G VFDVELL ++
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 49 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 108
PK GQ + HY G E G++ DS+ + P + +G ++ G+EEG+ M G + ++
Sbjct: 16 PKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 109 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 139
I P+ G VFDVELL ++
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 49 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 108
PK GQ + HY G E G++ DS+ + P + +G ++ G+EEG+ M G + ++
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 109 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 139
I P+ G VFDVELL ++
Sbjct: 76 ISPDYAYGATGVPGIIPPHATLVFDVELLKLE 107
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 49 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 108
PK GQ + HY G E G++ DS+ + P + +G ++ G+EEG+ M G + ++
Sbjct: 18 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 77
Query: 109 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 139
I P+ G VFDVELL ++
Sbjct: 78 ISPDYAYGATGHPGIIPPHATLVFDVELLKLE 109
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 49 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 108
PK GQ + HY G E G++ DS+ + P + +G ++ G+EEG+ M G + ++
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 109 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 139
I P+ G VFDVELL ++
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 49 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 108
PK GQ + HY G E G++ DS+ + P + +G ++ G+EEG+ M G + ++
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 109 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 139
I P+ G VFDVELL ++
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 47 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRR 106
D P+ G +V HY G G++ DS+ + + ++G ++ G+++GI+ M+ G
Sbjct: 25 DTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENAL 84
Query: 107 IIIPPEL--GPPVGPSTFFSAKQFEVFDVELLS 137
IPPEL G P T + + FDVELLS
Sbjct: 85 FTIPPELAYGESGSPPTIPANATLQ-FDVELLS 116
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 47 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRR 106
D P+ G +V HY G G++ DS+ + + ++G ++ G+++GI+ M+ G
Sbjct: 41 DTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENAL 100
Query: 107 IIIPPEL--GPPVGPSTFFSAKQFEVFDVELLS 137
IPPEL G P T + + FDVELLS
Sbjct: 101 FTIPPELAYGESGSPPTIPANATLQ-FDVELLS 132
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 49 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 108
PK GQ + HY G E G++ DS+ + P + +G ++ G EEG+ M G + ++
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLEEGVAQMSVGQRAKLT 75
Query: 109 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 139
I P+ G VFDVELL ++
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 49 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 108
PK GQ + HY G E G++ DS+ + P + +G ++ G+EEG+ M G + ++
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 109 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 139
I P+ G +FDVELL ++
Sbjct: 76 ISPDYAYGATGHPGIIPPNATLIFDVELLKLE 107
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 49 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 108
PK GQ + HY G E G++ DS+ + P + +G ++ G++EG+ M G + ++
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQEGVAQMSVGQRAKLT 75
Query: 109 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 139
I P+ G VFDVELL ++
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 49 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 108
PK GQ + HY G E G++ DS+ + P + +G ++ G+ EG+ M G + ++
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWAEGVAQMSVGQRAKLT 75
Query: 109 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 139
I P+ G VFDVELL ++
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 50 KDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIII 109
+ G + HY G E G DS+ Q P +GT ++ G+++G+ M G KR+++I
Sbjct: 7 RKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVI 66
Query: 110 PPELG------PPVGPSTFFSAKQFEVFDVELLSVQDCQRRT 145
P ELG PP P VF+VELL + +RRT
Sbjct: 67 PSELGYGERGAPPKIP-----GGATLVFEVELLKI---ERRT 100
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 11/96 (11%)
Query: 49 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 108
P+ G++V HY G G++ DS+ +G P + +G ++ G+++G+ M G K
Sbjct: 40 PQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT 99
Query: 109 IPPELG------PPVGPSTFFSAKQFEVFDVELLSV 138
IP +L PPV P K VF+VELL+V
Sbjct: 100 IPYQLAYGERGYPPVIPP-----KATLVFEVELLAV 130
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 49 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRII 108
PK GQ + HY G G+ DS+ +G P R +G ++ G++EG+ M G + +++
Sbjct: 17 PKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWDEGVAQMSVGQRAKLV 76
Query: 109 IPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 139
P+ G FDVELL V+
Sbjct: 77 CSPDYAYGSRGHPGVIPPNATLTFDVELLRVE 108
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 15/113 (13%)
Query: 34 SGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFE 93
SGL Y+ G G P V Y G G DST G PA ++ + ++PG+
Sbjct: 106 SGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWT 163
Query: 94 EGIRDMRPGGKRRIIIPPEL-------GPPVGPSTFFSAKQFEVFDVELLSVQ 139
E ++ M G I +P L G P+GP+ +F + L+SV+
Sbjct: 164 EALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETL------IFKIHLISVK 210
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 22/118 (18%)
Query: 34 SGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGF 92
SGL+++ G G P + HY G G DS+ +G P R N ++ G+
Sbjct: 37 SGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFR--PNEVIKGW 94
Query: 93 EEGIRDMRPGGKRRIIIPPELG----------PPVGPSTFFSAKQFEVFDVELLSVQD 140
E ++ MR G + R+ IP +L PP P FDVEL+S++D
Sbjct: 95 TEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLE---------FDVELISIKD 143
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 15/116 (12%)
Query: 34 SGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFE 93
SGL Y+ G G P V Y G G DST G PA ++ + ++PG+
Sbjct: 30 SGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWT 87
Query: 94 EGIRDMRPGGKRRIIIPPEL-------GPPVGPSTFFSAKQFEVFDVELLSVQDCQ 142
E ++ M G I +P L G P+GP+ +F + L+SV+
Sbjct: 88 EALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETL------IFKIHLISVKKSS 137
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 50 KDGQQVIFHYIGYNES-GRRIDSTYLQ--GSPARIRMGTNALVPGFEEGIRDMRPGGKRR 106
K G ++ HY GY E G ST+ G P +G + G+++G++ M G KR+
Sbjct: 30 KGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRK 89
Query: 107 IIIPPELGPPVGPSTFFSAKQFEVFDVELLSVQD 140
+IIPP LG + +F+++LL +++
Sbjct: 90 LIIPPALGYGKEGKGKIPPESTLIFNIDLLEIRN 123
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 30 TKRDSGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNAL 88
+K+D G++ VG G+ P G +V HY G +G++ DS++ + P +G +
Sbjct: 15 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 74
Query: 89 VPGFEEGIRDMRPGGKRRIIIPPE 112
+ ++ G+ M+ G ++ PE
Sbjct: 75 IKAWDIGVATMKKGEICHLLCKPE 98
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 30 TKRDSGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNAL 88
+K+D G++ VG G+ P G +V HY G +G++ DS++ + P +G +
Sbjct: 15 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 74
Query: 89 VPGFEEGIRDMRPGGKRRIIIPPE 112
+ ++ G+ M+ G ++ PE
Sbjct: 75 IKAWDIGVATMKKGEICHLLCKPE 98
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 30 TKRDSGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNAL 88
+K+D G++ VG G+ P G +V HY G +G++ DS++ + P +G +
Sbjct: 31 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 90
Query: 89 VPGFEEGIRDMRPGGKRRIIIPPE 112
+ ++ G+ M+ G ++ PE
Sbjct: 91 IKAWDIGVATMKKGEICHLLCKPE 114
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 30 TKRDSGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNAL 88
+K+D G++ VG G+ P G +V HY G +G++ DS++ + P +G +
Sbjct: 31 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 90
Query: 89 VPGFEEGIRDMRPGGKRRIIIPPELG-PPVGPSTFFSAKQFEVFDVELL 136
+ ++ G+ M+ G ++ PE G + F++ELL
Sbjct: 91 IKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELL 139
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 12/115 (10%)
Query: 33 DSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRR-IDSTYLQGSPARIRMGTNALVPG 91
D G++ G GD V+ Y GY E R DS Y + +P +++G + + G
Sbjct: 25 DRGVLKDVIREGAGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWG 84
Query: 92 FEEGIRDMRPGGKRRIIIPPELG------PPVGPSTFFSAKQFEVFDVELLSVQD 140
E G+ MR G R + P PP+ P +F++ELL D
Sbjct: 85 MELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPN-----TTVLFEIELLDFLD 134
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 37 IYRDFEVGKGDCPKDGQQVIFHYIGYNE-SGRRIDSTYLQGSPARIRMGTNALVPGFEEG 95
I R E G+ + PK G +V HY+G E SG+ DS+ + P + +G ++ G++
Sbjct: 21 ILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDIC 80
Query: 96 IRDMRPGGKRRIIIPPELG-PPVGPSTFFSAKQFEVFDVELLSVQD 140
+ M K + + + G G +F++EL+S ++
Sbjct: 81 VASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISFRE 126
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 30 TKRDSGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNAL 88
+K+D G++ VG G+ P G +V HY G +G++ DS++ + P +G +
Sbjct: 31 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 90
Query: 89 VPGFEEGIRDMRPGGKRRIIIPPELG-PPVGPSTFFSAKQFEVFDVELLSVQ 139
+ ++ G+ M+ G ++ PE G + F++ELL +
Sbjct: 91 IKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 142
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 30 TKRDSGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNAL 88
+K+D G++ VG G+ P G +V HY G +G++ DS++ + P +G +
Sbjct: 27 SKKDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQV 86
Query: 89 VPGFEEGIRDMRPGGKRRIIIPPELG---------PPVGPSTFFSAKQFEVFDVELLSVQ 139
+ ++ G+ M+ G ++ PE P + FF + + +LL
Sbjct: 87 IKAWDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDFKGEDLLEDG 146
Query: 140 DCQRRT 145
RRT
Sbjct: 147 GIIRRT 152
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 30 TKRDSGLIYRDFEVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNAL 88
+K+D G++ VG G+ P G +V HY G +G++ DS++ + P +G +
Sbjct: 27 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 86
Query: 89 VPGFEEGIRDMRPGGKRRIIIPPELG-PPVGPSTFFSAKQFEVFDVELL 136
+ ++ G+ M+ G ++ PE G + F++ELL
Sbjct: 87 IKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELL 135
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 37 IYRDFEVGKGDCPKDGQQVIFHYIGYNES-GRRIDSTYLQGSPARIRMGTNALVPGFEEG 95
I + + G+ + PK G +V HY+G ES G+ DS++ + P + + ++ G++
Sbjct: 22 ILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDIC 81
Query: 96 IRDMRPGGKRRIIIPPELG-PPVGPSTFFSAKQFEVFDVELLSVQDCQ 142
+ MR K + I G G +F++ELLS ++ +
Sbjct: 82 VSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRELE 129
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 37 IYRDFEVGKGDCPKDGQQVIFHYIGYNES-GRRIDSTYLQGSPARIRMGTNALVPGFEEG 95
I + + G+ + PK G +V HY+G ES G+ DS++ + P + + ++ G++
Sbjct: 22 ILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDIC 81
Query: 96 IRDMRPGGKRRIIIPPELG-PPVGPSTFFSAKQFEVFDVELLSVQDCQ 142
+ MR K + I G G +F++ELLS ++ +
Sbjct: 82 VSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRELE 129
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 14/111 (12%)
Query: 31 KRDSGLIYRDFEVGKGDC-PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALV 89
K+D G++ + G+G P G V HY+G E+G + DS+ +G +G ++
Sbjct: 11 KKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVI 70
Query: 90 PGFEEGIRDMRPGGKRRIII-----------PPELGPPVGPSTFFSAKQFE 129
G++ G+ M G I PP++ P G + F + FE
Sbjct: 71 KGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKI--PGGATLIFEVELFE 119
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 52 GQQVIFHYIGYNESGRRIDSTYLQGS-------------PARIRMGTNALVPGFEEGIRD 98
G ++ YIG ESG D++ + + P +G L+ GFEE + D
Sbjct: 5 GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD 64
Query: 99 MRPGGKRRIIIPPE 112
M G ++ + IP E
Sbjct: 65 MEVGDEKTVKIPAE 78
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 33.9 bits (76), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 14/114 (12%)
Query: 31 KRDSGLIYRDFEVGKG-DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALV 89
K+D G++ G G + P G +V HY G+ G + DS+ + +G ++
Sbjct: 27 KQDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVI 86
Query: 90 PGFEEGIRDMRPGGKRRIIIPPELG-------PPVGPSTFFSAKQFEVFDVELL 136
++ + M+ G RI PE P + P+ VF+VEL
Sbjct: 87 KAWDIAVATMKVGELCRITCKPEYAYGSAGSPPKIPPNATL------VFEVELF 134
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 32.7 bits (73), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 14/114 (12%)
Query: 31 KRDSGLIYRDFEVGKG-DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALV 89
K+D G++ G G + P G +V HY G+ G + DS+ + +G ++
Sbjct: 28 KQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVI 87
Query: 90 PGFEEGIRDMRPGGKRRIIIPPELG-------PPVGPSTFFSAKQFEVFDVELL 136
++ I M+ G I PE P + P+ VF+VEL
Sbjct: 88 KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATL------VFEVELF 135
>pdb|3PRB|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRB|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRD|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 231
Score = 32.7 bits (73), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 52 GQQVIFHYIGYNESGRRIDSTYLQGS-------------PARIRMGTNALVPGFEEGIRD 98
G+ V Y GY + G+ D+T + + P I G ++PG +E I +
Sbjct: 5 GKMVKISYDGYVD-GKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILE 63
Query: 99 MRPGGKRRIIIPPE 112
M G +R +++PPE
Sbjct: 64 MDVGEEREVVLPPE 77
>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The
Chaperone Binding Site Occupied By The Linker Of The
Purification Tag
Length = 169
Score = 32.3 bits (72), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 55 VIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELG 114
V+ H+ + G +ST G PA R+G +L G E+ + ++ G K + P+
Sbjct: 31 VLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAA 90
Query: 115 ---PPVGPSTFFSAKQF 128
P +FS ++F
Sbjct: 91 FGVPSPDLIQYFSRREF 107
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 32.3 bits (72), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 18/111 (16%)
Query: 35 GLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEE 94
G++ + G G P +V Y+G G+ D + P R+ ++++ G+
Sbjct: 118 GILMTELTPGTGPKPDANGRVEVRYVGRLPDGKIFDQST---QPQWFRL--DSVISGWTS 172
Query: 95 GIRDMRPGGKRRIIIPPE-------LGPPVGPSTFFSAKQFEVFDVELLSV 138
+++M G K R++IP + G + P T VF++EL++V
Sbjct: 173 ALQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPFTPL------VFEIELIAV 217
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 14/114 (12%)
Query: 31 KRDSGLIYRDFEVGKG-DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALV 89
K+D G++ G G + P G +V HY G+ G + DS+ + +G ++
Sbjct: 32 KQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVI 91
Query: 90 PGFEEGIRDMRPGGKRRIIIPPELG-------PPVGPSTFFSAKQFEVFDVELL 136
++ I M+ G I PE P + P+ VF+VEL
Sbjct: 92 KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATL------VFEVELF 139
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 14/117 (11%)
Query: 31 KRDSGLIYRDFEVGKG-DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALV 89
K+D G++ G G + P G +V HY G+ G + DS+ + +G ++
Sbjct: 48 KQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVI 107
Query: 90 PGFEEGIRDMRPGGKRRIIIPPELG-------PPVGPSTFFSAKQFEVFDVELLSVQ 139
++ I M+ G I PE P + P+ VF+VEL +
Sbjct: 108 KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATL------VFEVELFEFK 158
>pdb|3PR9|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 157
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 52 GQQVIFHYIGYNESGRRIDSTYLQGS-------------PARIRMGTNALVPGFEEGIRD 98
G+ V Y GY + G+ D+T + + P I G ++PG +E I +
Sbjct: 5 GKMVKISYDGYVD-GKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILE 63
Query: 99 MRPGGKRRIIIPPE 112
M G +R +++PPE
Sbjct: 64 MDVGEEREVVLPPE 77
>pdb|2KR7|A Chain A, Solution Structure Of Helicobacter Pylori Slyd
Length = 151
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 78 PARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSA---KQFEVFDVE 134
P +GTN ++ G E+ + + G ++I PE V S++ QFE ++E
Sbjct: 36 PLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYESSYLQEVPRDQFEGIELE 95
>pdb|1T11|A Chain A, Trigger Factor
pdb|1T11|B Chain B, Trigger Factor
Length = 392
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 47 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPAR---IRMGTNALVPGFEEGI 96
+ ++G++V ++G ID +G A + MG ++PGFE+GI
Sbjct: 159 EAAENGKRVSIDFVG------SIDGVEFEGGKAENFPLEMGAGRMIPGFEDGI 205
>pdb|1L1P|A Chain A, Solution Structure Of The Ppiase Domain From E. Coli
Trigger Factor
Length = 106
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 69 IDSTYLQGSPAR---IRMGTNALVPGFEEGIRDMRPG 102
+D +G A + MG ++PGFE+GI+ + G
Sbjct: 29 VDGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAG 65
>pdb|3HQF|A Chain A, Crystal Structure Of Restriction Endonuclease Ecorii
N-Terminal Effector-Binding Domain In Complex With
Cognate Dna
Length = 181
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 14 FIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFH---YIGYNESGRRID 70
+I G K+ S N+T+ + ++ V DCP + I++ + G + +RI
Sbjct: 50 YIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSRHFGKTRNEKRI- 108
Query: 71 STYLQGSPARIRMGTNALV 89
+ + +GSP + T AL
Sbjct: 109 TRWGRGSPLQDPENTGALT 127
>pdb|1NA6|A Chain A, Crystal Structure Of Restriction Endonuclease Ecorii
Mutant R88a
pdb|1NA6|B Chain B, Crystal Structure Of Restriction Endonuclease Ecorii
Mutant R88a
Length = 404
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 14 FIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFH---YIGYNESGRRID 70
+I G K+ S N+T+ + ++ V DCP + I++ + G + +RI
Sbjct: 41 YIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEKRI- 99
Query: 71 STYLQGSPARIRMGTNALV 89
+ + +GSP + T AL
Sbjct: 100 TRWGRGSPLQDPENTGALT 118
>pdb|1NQK|A Chain A, Structural Genomics, Crystal Structure Of
Alkanesulfonate Monooxygenase
Length = 381
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 58 HYIGYNESGRRIDSTYLQG-SPARIRMG-TNALVP 90
HY+G E R +D YLQ + A R+G T L+P
Sbjct: 16 HYLGTEEGSRPVDHGYLQQIAQAADRLGYTGVLIP 50
>pdb|1M41|A Chain A, Crystal Structure Of Escherichia Coli Alkanesulfonate
Monooxygenase Ssud At 2.3 A Resolution
pdb|1M41|B Chain B, Crystal Structure Of Escherichia Coli Alkanesulfonate
Monooxygenase Ssud At 2.3 A Resolution
Length = 380
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 58 HYIGYNESGRRIDSTYLQG-SPARIRMG-TNALVP 90
HY+G E R +D YLQ + A R+G T L+P
Sbjct: 15 HYLGTEEGSRPVDHGYLQQIAQAADRLGYTGVLIP 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.142 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,219,055
Number of Sequences: 62578
Number of extensions: 234314
Number of successful extensions: 366
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 66
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)