Query 031659
Match_columns 155
No_of_seqs 185 out of 870
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 05:09:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031659.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031659hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_R 40S ribosomal protein S 100.0 4.7E-77 1.6E-81 469.8 -12.0 154 1-155 1-154 (154)
2 3u5c_P 40S ribosomal protein S 100.0 2.2E-70 7.4E-75 427.4 8.8 138 15-155 5-142 (142)
3 3j20_T 30S ribosomal protein S 100.0 1.7E-66 5.8E-71 401.4 4.5 129 23-155 4-132 (132)
4 2xzm_S RPS15E; ribosome, trans 100.0 2.2E-64 7.6E-69 394.4 6.3 132 18-149 4-144 (144)
5 3bbn_S Ribosomal protein S19; 100.0 5.3E-39 1.8E-43 235.0 6.2 84 55-142 1-87 (92)
6 3a1p_B 30S ribosomal protein S 100.0 5.4E-39 1.8E-43 235.4 4.2 83 55-141 1-86 (93)
7 3i1m_S 30S ribosomal protein S 100.0 8.2E-39 2.8E-43 234.0 5.0 82 55-140 1-85 (92)
8 3r8n_S 30S ribosomal protein S 100.0 6.6E-37 2.3E-41 218.5 4.6 75 57-135 1-78 (79)
9 3a5t_A Transcription factor MA 77.5 1.1 3.9E-05 32.9 2.1 34 29-71 7-40 (107)
10 2ifc_A Citrate synthase; oxalo 63.2 3.3 0.00011 35.9 2.1 24 24-47 30-55 (385)
11 1skn_P DNA-binding domain of S 60.9 6.7 0.00023 28.3 3.1 37 29-72 30-66 (92)
12 1vgp_A 373AA long hypothetical 60.5 4 0.00014 35.2 2.1 24 24-47 26-50 (373)
13 2p2w_A Citrate synthase; trans 60.4 4 0.00014 35.2 2.1 24 24-47 25-49 (367)
14 1a59_A Citrate synthase; cold- 60.4 4 0.00014 35.2 2.1 24 24-47 28-52 (378)
15 1iom_A Citrate synthase; open 60.3 4 0.00014 35.3 2.1 24 24-47 26-50 (377)
16 1aj8_A Citrate synthase; hyper 60.2 4 0.00014 35.2 2.1 24 24-47 24-48 (371)
17 2wt7_B Transcription factor MA 58.6 2.8 9.5E-05 30.0 0.7 31 33-72 1-31 (90)
18 2ibp_A Citrate synthase; disul 58.4 4.5 0.00015 35.5 2.1 24 24-47 45-69 (409)
19 2kz5_A Transcription factor NF 56.5 8.3 0.00028 27.8 2.9 38 29-73 34-71 (91)
20 2c6x_A Citrate synthase 1; tri 56.2 5.1 0.00017 34.5 2.1 24 24-47 24-48 (363)
21 1vgm_A 378AA long hypothetical 55.9 5.2 0.00018 34.6 2.1 24 24-47 28-52 (378)
22 1o7x_A Citrate synthase; lyase 55.9 5.2 0.00018 34.6 2.1 24 24-47 27-51 (377)
23 3o8j_A 2-methylcitrate synthas 54.3 5.1 0.00018 35.1 1.8 24 24-47 56-80 (404)
24 3tqg_A 2-methylcitrate synthas 52.8 5.7 0.00019 34.5 1.8 25 23-47 29-54 (375)
25 3hwk_A Methylcitrate synthase; 52.0 6.6 0.00022 34.6 2.1 24 24-47 72-96 (414)
26 3msu_A Citrate synthase; helix 49.1 7 0.00024 34.6 1.8 24 24-47 74-98 (427)
27 3l96_A Citrate synthase; quate 48.5 7.1 0.00024 34.5 1.8 24 24-47 65-89 (426)
28 2h12_A Citrate synthase; acido 48.5 7.2 0.00025 34.5 1.8 24 24-47 73-97 (436)
29 2a1j_A DNA repair endonuclease 45.6 12 0.00041 24.1 2.2 25 31-55 26-51 (63)
30 2lz1_A Nuclear factor erythroi 44.7 16 0.00055 26.2 2.8 37 30-73 35-71 (90)
31 1z00_B DNA repair endonuclease 44.5 11 0.00039 25.9 2.0 30 31-60 40-70 (84)
32 1csh_A Citrate synthase; lyase 42.2 7.8 0.00027 34.2 1.1 23 25-47 62-94 (435)
33 2lpe_A Kinase suppressor of RA 41.7 13 0.00046 28.8 2.2 19 29-47 106-124 (149)
34 1awc_A Protein (GA binding pro 36.2 34 0.0012 25.2 3.6 35 22-56 73-108 (110)
35 1j2m_A CPI-17, 17-kDa PKC-pote 35.1 12 0.00041 27.3 0.9 14 29-42 53-66 (99)
36 3v2d_5 50S ribosomal protein L 27.2 29 0.001 22.7 1.7 23 92-114 37-59 (60)
37 1wwu_A Hypothetical protein FL 24.2 37 0.0013 24.6 1.9 40 18-57 34-76 (99)
38 1zav_U 50S ribosomal protein L 24.1 48 0.0016 18.9 2.0 18 32-49 7-24 (30)
39 2f3j_A RNA and export factor b 23.1 24 0.00081 26.4 0.7 21 25-45 8-28 (177)
40 2jo8_A Serine/threonine-protei 22.8 62 0.0021 20.8 2.6 19 30-48 2-20 (51)
41 2kso_A Ephrin type-A receptor 21.3 33 0.0011 23.1 1.1 25 22-46 32-57 (82)
42 3jyw_X 60S ribosomal protein L 21.1 60 0.0021 22.7 2.5 21 29-49 2-22 (86)
43 2wuj_A Septum site-determining 20.9 37 0.0013 21.6 1.2 28 20-49 11-38 (57)
44 1b0x_A Protein (EPHA4 receptor 20.1 35 0.0012 23.4 1.1 26 21-46 41-67 (94)
No 1
>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s
Probab=100.00 E-value=4.7e-77 Score=469.80 Aligned_cols=154 Identities=88% Similarity=1.340 Sum_probs=89.6
Q ss_pred CCCcccchhhhhhhcCCcccceeeeeeecCChhHHhcCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHhhhcCCCC
Q 031659 1 MADVETGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPG 80 (155)
Q Consensus 1 ~~~~~~~~~~~~~~~~~Kkrtf~kFtYRG~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~ 80 (155)
|||++++. .++||+++|||||++|||||+|||||++||+|||++|+||||||+++|||+++|..||++||+++++++++
T Consensus 1 ~~~~~~~~-~~~~~~~~kkrtf~kFtYrG~~ld~Ll~ms~eel~~L~~aR~RR~l~RGl~~k~~~Llkklrkak~~~~~~ 79 (154)
T 3iz6_R 1 MADVEVET-EVAAGAQPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAG 79 (154)
T ss_dssp ----------------------------------------------------------CCCCSCCCCSSCCSCCCSHHHH
T ss_pred CCcccchh-HHHHHhhhcccceeeEEEecCcHHHHHhCCHHHHHHHccHHHhhhhhcCCCHHHHHHHHHHHHhhhccCcc
Confidence 78888873 33566888999999999999999999999999999999999999999999999999999999999988888
Q ss_pred CCCCceEeccCCceeccCccccEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCcCcccCC
Q 031659 81 EKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155 (155)
Q Consensus 81 ~kp~~Ikt~~R~~~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~Hg~pGigAT~sS~FvplK 155 (155)
++|++|+||+|+|+|+|+|||++|+|||||+|++|+|+|||||||||||++||++++||+|||||||||+|||||
T Consensus 80 ~k~~~IkT~sR~s~IlPemVG~ti~VyNGK~f~~V~It~eMVGhkLGEFa~Trk~~~HgkpGiGAT~SS~FiPlK 154 (154)
T 3iz6_R 80 EKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154 (154)
T ss_dssp HTHHHHHTCSCSCCCCCCCCCCCCGGGTTCCCEEESSSSEEECCCCSSCCSSCGGGTTSSHHHHHTTCC------
T ss_pred cCCceeeecccCCEECHHHCCcEEEEEcCcceeeEEeccCccceeeeeeeeeeccCcCCCCCCCcccccccccCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*
Probab=100.00 E-value=2.2e-70 Score=427.37 Aligned_cols=138 Identities=67% Similarity=1.132 Sum_probs=123.2
Q ss_pred cCCcccceeeeeeecCChhHHhcCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEeccCCce
Q 031659 15 GQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMI 94 (155)
Q Consensus 15 ~~~Kkrtf~kFtYRG~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~Ikt~~R~~~ 94 (155)
+++|||||++|||||+|||||++||+|||++|+||||||+++|||+++|..||++||+|+++++++++|++|+||+|+|+
T Consensus 5 ~~~kkrtf~kFtyrG~~ld~Ll~ms~e~l~~L~~aR~RR~l~RGl~~k~~~Ll~klrkak~~~~~~~k~~~ikT~sR~s~ 84 (142)
T 3u5c_P 5 VNAKKRVFKTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMI 84 (142)
T ss_dssp ---CCCCCCCCBSSSCBHHHHHTTCHHHHHHHSCHHHHHHHHSCCSSCSHHHHHHHHHHHHHSCSSSCCCCEEECCTTCB
T ss_pred ccccccceeeEEEccccHHHHHcCCHHHHHHHhhHHHhhhhccCCCHHHHHHHHHHHHHhhhcCcccCCcceEeeccCCE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCccccEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCcCcccCC
Q 031659 95 IVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155 (155)
Q Consensus 95 IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~Hg~pGigAT~sS~FvplK 155 (155)
|+|+|||++|+|||||+|++|+|+||||||||||||+||+++.||+||| |||+|||||
T Consensus 85 IlP~mVG~ti~VyNGK~f~~V~It~eMVGhkLGEFa~Trk~~~Hg~~gi---~SS~fiplK 142 (142)
T 3u5c_P 85 IVPEMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSITYTPVRHGRAGA---TTSRFIPLK 142 (142)
T ss_dssp CCGGGTTCEEEEESSSSEEEEECCGGGTTSBGGGGSCCSCCCCCSCC--------------
T ss_pred eChhHCCCEEEEEcCCeeEEEecccCccceeeeeeeeEecccccCCCCc---cccccccCC
Confidence 9999999999999999999999999999999999999999999999999 999999997
No 3
>3j20_T 30S ribosomal protein S19P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.7e-66 Score=401.42 Aligned_cols=129 Identities=54% Similarity=0.905 Sum_probs=107.8
Q ss_pred eeeeeecCChhHHhcCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEeccCCceeccCcccc
Q 031659 23 KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGS 102 (155)
Q Consensus 23 ~kFtYRG~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~Ikt~~R~~~IlP~mVG~ 102 (155)
++|||||+|||||++||+|||++|+||||||++.||++..+.+||++++++++++ +|++|+||+|+|+|+|+|||+
T Consensus 4 ~kftyrG~~ld~L~~ms~~~l~~L~~ar~rRslkkG~~~~~~~LlkKi~k~~~~~----~~~~ikT~sR~s~IlP~mVG~ 79 (132)
T 3j20_T 4 KEFRYRGYTLEQLMNMSLEELARLFPARQRRSLKRGLTPEQKKLLRKIRLAKKGK----YKKPIRTHCRDMIILPEMVGL 79 (132)
T ss_dssp --CCSSSSCHHHHHHHHHHHHHHHSCHHHHHHHHHCCCHHHHHHHHHHHHHSSSS----CCCCEEECCCSCBCCGGGTTC
T ss_pred cEEEEcCCcHHHHHcCCHHHHHHHhhHHHHHHhhcCCchhhHHHHHHHHHHHhcc----CCcceEecccCCEeChHHCCc
Confidence 6899999999999999999999999999999999999988999999999998754 578999999999999999999
Q ss_pred EEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCcCcccCC
Q 031659 103 IIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155 (155)
Q Consensus 103 ~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~Hg~pGigAT~sS~FvplK 155 (155)
+|+|||||+|++|+|+||||||||||||+||+++.||+|||||||||+|||||
T Consensus 80 ti~VyNGK~f~~V~It~eMVGhkLGEFa~Trk~~~H~~pGigAT~sS~fiplK 132 (132)
T 3j20_T 80 TIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKKVEHGAPGVGATRSSMFVAVK 132 (132)
T ss_dssp EEEEECSSSEEEEECCGGGTTSBGGGTSCSSCCCCCC----------------
T ss_pred EEEEECCCeeeeeecccCccceeeeeeeeEeccCcCCCCCcCcccccccccCC
Confidence 99999999999999999999999999999999999999999999999999997
No 4
>2xzm_S RPS15E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_S 3j0o_S 3j0l_S 3j0p_S 3j0q_S
Probab=100.00 E-value=2.2e-64 Score=394.35 Aligned_cols=132 Identities=49% Similarity=0.943 Sum_probs=114.1
Q ss_pred cccceeeeeeecCChhHHhc---------CCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEe
Q 031659 18 KKRTFKKFSFRGVDLDALLD---------MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRT 88 (155)
Q Consensus 18 Kkrtf~kFtYRG~~ld~L~~---------ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~Ikt 88 (155)
||++|++|||||+|||||++ ||+|||++|+||||||++.||+..++.+||+++++++++++++++|++|+|
T Consensus 4 ~k~~~~kftyrG~~l~~L~~~~~~~~~~~m~~~~~~~l~~ar~RRSlkKGpfv~~~~LLkKi~k~~~~~~~~~k~~vIKT 83 (144)
T 2xzm_S 4 NKKSIKKFTFRGKGLEELTALASGSNSEKLISDELAALFDAKTRRRVKRGISEKYAKFVNKVRRSKEKCPAGEKPVPVKT 83 (144)
T ss_dssp -------CCCCTTCHHHHHHHHSSTTCCSSSCHHHHHHSCHHHHHHHHHHCCSHHHHHHHHHHHHHHHSCTTTCCCCEEE
T ss_pred cccceeeeeecCCcHHHHHhhhcccccccCCHHHHHHHhchhhhhhhhCCCCcccHHHHHHHHHHhhhhhccCCCceEEE
Confidence 67899999999999999999 999999999999999999999998899999999999998888889999999
Q ss_pred ccCCceeccCccccEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCc
Q 031659 89 HLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSS 149 (155)
Q Consensus 89 ~~R~~~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~Hg~pGigAT~sS 149 (155)
|+|+|+|+|+|||++|+|||||+|++|+|+||||||||||||+||++++|++|||||||||
T Consensus 84 wsR~stIlPemVG~ti~VyNGK~fvpV~IteeMVGHKLGEFa~TRk~~~H~~pGigat~s~ 144 (144)
T 2xzm_S 84 HYRSMIVIPELVGGIVGVYNGKEFVNVEVKFDMIGKYLAEFAMTYKPTTHGKTGAAGGKGK 144 (144)
T ss_dssp CCTTCBCCGGGTTCEEEEECSSSEEEEECCGGGTTSBGGGGSCCSCCCCCCC---------
T ss_pred eccCcCcCHhHCCcEEEEecCCeeeeeeecccccceeeeceeeecccCccCCCCcCcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999997
No 5
>3bbn_S Ribosomal protein S19; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=5.3e-39 Score=234.99 Aligned_cols=84 Identities=31% Similarity=0.537 Sum_probs=77.3
Q ss_pred hhcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceeccCccccEEEEecCCcccccccCCCcceeeeeeeee
Q 031659 55 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI 131 (155)
Q Consensus 55 ~~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~Ikt~~R~~~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~ 131 (155)
|.||+|++|+ +||++++++++ .+ ++++|+||+|+|+|+|+|||++|+|||||+|++|+|+||||||||||||+
T Consensus 1 M~RS~~Kgpfv~~~Llkki~~~~~---~~-~~~~ikT~sR~stIlPemVG~ti~VhNGK~fv~V~It~~MVGhkLGEFa~ 76 (92)
T 3bbn_S 1 MTRSLKKNPFVANHLLRKIEKLNK---KA-EKEIIVTWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFAP 76 (92)
T ss_dssp CCCSCSSCCCCCHHHHHHHHTTTT---TT-CCCCEEECCCSCCCCTTCTTCCEEEECSSCEEEECCCSSCSSCCSTTTSC
T ss_pred CCCccccCcccCHHHHHHHHHHHh---cC-CCcceEEEecCcccChhhcCcEEEEecCceEEEEEEeccccceEecceee
Confidence 6899999997 89999998765 23 37899999999999999999999999999999999999999999999999
Q ss_pred eeecccCCCCC
Q 031659 132 SYKPVKHGRPG 142 (155)
Q Consensus 132 Trk~~~Hg~pG 142 (155)
||+++.|++..
T Consensus 77 Trk~~~H~~~~ 87 (92)
T 3bbn_S 77 TLNFRGHAKND 87 (92)
T ss_dssp SSCCSSSCCCC
T ss_pred eecccccCCCc
Confidence 99999998754
No 6
>3a1p_B 30S ribosomal protein S19; RIMM N-terminal domain, PRC-barrel domain, beta barrels, ribosome, 30S ribosomal subunit, ribosome biogenesis; 2.30A {Thermus thermophilus} PDB: 1fka_S 1gix_V* 1hnw_S* 1hnx_S* 1hnz_S* 1hr0_S 1ibk_S* 1ibl_S* 1ibm_S 1jgo_V* 1jgp_V* 1jgq_V* 1ml5_V* 1xmo_S* 1xmq_S* 1xnq_S* 1xnr_S* 1yl4_V 2b64_S* 2b9m_S* ...
Probab=100.00 E-value=5.4e-39 Score=235.42 Aligned_cols=83 Identities=35% Similarity=0.549 Sum_probs=69.6
Q ss_pred hhcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceeccCccccEEEEecCCcccccccCCCcceeeeeeeee
Q 031659 55 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI 131 (155)
Q Consensus 55 ~~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~Ikt~~R~~~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~ 131 (155)
|.||+|++|+ +||++++++++. ++|++|+||+|+|+|+|+|||++|+|||||+|++|+|+||||||||||||+
T Consensus 1 M~RS~~Kgpfv~~~Llkki~~~~~~----~~~~~ikT~sR~stIlP~mVG~ti~VhNGK~fv~V~It~eMVGhkLGEFa~ 76 (93)
T 3a1p_B 1 MPRSLKKGVFVDDHLLEKVLELNAK----GEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAP 76 (93)
T ss_dssp --------CCCCHHHHHHHHHHHHH----TCCCCEEECCSSSBCCGGGTTCEEEEECSSSEEEEECCGGGTTSBGGGGCC
T ss_pred CCCccccCcccCHHHHHHHHHHHhc----CCCcceEEEecCcCcChhhcCcEEEEecCceEEEEEeccCccceeecceee
Confidence 6899999997 899999998763 247899999999999999999999999999999999999999999999999
Q ss_pred eeecccCCCC
Q 031659 132 SYKPVKHGRP 141 (155)
Q Consensus 132 Trk~~~Hg~p 141 (155)
||+++.|++.
T Consensus 77 Trk~~~H~~~ 86 (93)
T 3a1p_B 77 TRTYRGHGKE 86 (93)
T ss_dssp CSCCCCTTGG
T ss_pred eecccccCcc
Confidence 9999999753
No 7
>3i1m_S 30S ribosomal protein S19; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_S* 3e1a_L 3e1c_L 1vs5_S 3i1o_S 3i1q_S 3i1s_S 3i1z_S 3i21_S 3izv_W* 3izw_W* 3kc4_S 3or9_S 3ora_S 3sfs_S* 3uoq_S* 4gaq_S* 4gas_S* 2qal_S* 1p6g_S ...
Probab=100.00 E-value=8.2e-39 Score=234.05 Aligned_cols=82 Identities=38% Similarity=0.568 Sum_probs=72.0
Q ss_pred hhcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceeccCccccEEEEecCCcccccccCCCcceeeeeeeee
Q 031659 55 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI 131 (155)
Q Consensus 55 ~~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~Ikt~~R~~~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~ 131 (155)
|.||+|++|+ +||++++++++.. ++++|+||+|+|+|+|+|||++|+|||||+|++|+|+||||||||||||+
T Consensus 1 M~RS~~KGpfv~~~Llkki~k~~~~~----~~~~ikT~sR~stIlP~mVG~ti~VyNGK~fv~V~It~~MVGhkLGEFa~ 76 (92)
T 3i1m_S 1 MPRSLKKGPFIDLHLLKKVEKAVESG----DKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAP 76 (92)
T ss_dssp --CCCCSSCCCCHHHHHHHHHHHHTC----CCSCCEECCTTCBCCGGGSSCCCEEECSSSEEECCCCTTCCSSBGGGSSC
T ss_pred CCcccccCcCcCHHHHHHHHHHHhcC----CCcceEEecCCCEechHHCCCEEEEEcCceEEEEEeecCeeeeEeeeeee
Confidence 7899999997 9999999988643 46789999999999999999999999999999999999999999999999
Q ss_pred eeecccCCC
Q 031659 132 SYKPVKHGR 140 (155)
Q Consensus 132 Trk~~~Hg~ 140 (155)
||+++.|++
T Consensus 77 TRk~~~H~~ 85 (92)
T 3i1m_S 77 TRTYRGHAA 85 (92)
T ss_dssp CCCCC----
T ss_pred EecccccCc
Confidence 999999986
No 8
>3r8n_S 30S ribosomal protein S19; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_S 3fih_S* 3j18_S* 2wwl_S 3oar_S 3oaq_S 3ofb_S 3ofa_S 3ofp_S 3ofx_S 3ofy_S 3ofo_S 3r8o_S 4a2i_S 4gd1_S 4gd2_S 2gy9_S 2gyb_S
Probab=100.00 E-value=6.6e-37 Score=218.53 Aligned_cols=75 Identities=40% Similarity=0.602 Sum_probs=69.6
Q ss_pred cCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceeccCccccEEEEecCCcccccccCCCcceeeeeeeeeee
Q 031659 57 RGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISY 133 (155)
Q Consensus 57 Rgl~k~~~---~Llkklrkak~~~~~~~kp~~Ikt~~R~~~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Tr 133 (155)
||+||+|+ +||++++++++.. ++++|+||+|+|+|+|+|||++|+|||||+|++|+|+||||||||||||+||
T Consensus 1 RS~~Kgpfv~~~Llkki~k~~~~~----~~~~ikT~sR~stIlP~mVG~ti~VyNGk~f~~V~It~~MVGhkLGEFa~TR 76 (79)
T 3r8n_S 1 RSLKKGPFIDLHLLKKVEKAVESG----DKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTR 76 (79)
T ss_dssp CCCCSCCCCCHHHHHHHGGGTTSC----CCSCEECCCTTSBCCSTTTTCCEEEECSSSEECCCCCTTCCSSBTTTTSCSS
T ss_pred CCcccCcCcCHHHHHHHHHHHhcC----CCcceEEecCCCEECHHHCCCEEEEECCCeeEEEEeccCeeceEeeeeeeEe
Confidence 78999996 9999999887532 4678999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 031659 134 KP 135 (155)
Q Consensus 134 k~ 135 (155)
++
T Consensus 77 ~~ 78 (79)
T 3r8n_S 77 TY 78 (79)
T ss_dssp CC
T ss_pred ec
Confidence 86
No 9
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=77.50 E-value=1.1 Score=32.94 Aligned_cols=34 Identities=29% Similarity=0.498 Sum_probs=27.1
Q ss_pred cCChhHHhcCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHH
Q 031659 29 GVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLR 71 (155)
Q Consensus 29 G~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklr 71 (155)
+++.|+|.+||.+||-.+| +|+++.+...|+..|
T Consensus 7 ~~sd~~Lv~m~v~elN~~L---------~~Ls~~e~~~lK~~R 40 (107)
T 3a5t_A 7 SLTDEELVTMSVRELNQHL---------RGLSKEEIIQLKQRR 40 (107)
T ss_dssp CCCHHHHHHSCHHHHHHTT---------TTCCHHHHHHHHHHH
T ss_pred CCCHHHHhcCCHHHHHHHH---------hCCCHHHHHHHHHHH
Confidence 5789999999999997665 577777777777665
No 10
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=63.24 E-value=3.3 Score=35.94 Aligned_cols=24 Identities=17% Similarity=0.509 Sum_probs=20.8
Q ss_pred eeeeecCChhHHhc--CCHHHHHHHH
Q 031659 24 KFSFRGVDLDALLD--MSTDELAKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~--ms~eel~~L~ 47 (155)
...|||++++||.+ -++||.+-||
T Consensus 30 ~L~YRGy~i~dLa~~~~~fEeva~LL 55 (385)
T 2ifc_A 30 ILRYGGYSVEDIIASGAQDEEIQYLF 55 (385)
T ss_dssp EEEETTEEHHHHHHTTCCHHHHHHHH
T ss_pred EEEECCccHHHHHhcCCCHHHHHHHH
Confidence 48899999999998 6799988774
No 11
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=60.89 E-value=6.7 Score=28.30 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=27.5
Q ss_pred cCChhHHhcCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHH
Q 031659 29 GVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRK 72 (155)
Q Consensus 29 G~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrk 72 (155)
+++.||+.+||.+||-+++. ..+|+..+..+++++|.
T Consensus 30 Pfs~~eIv~lpv~efn~lLk-------~~~Ls~~Ql~~ir~~RR 66 (92)
T 1skn_P 30 PVSAFQISEMSLSELQQVLK-------NESLSEYQRQLIRKIRR 66 (92)
T ss_dssp SSCHHHHHHSCHHHHHHHHH-------HSCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHCcHHHHHHHHH-------hCCCCHHHHHHHHHHHH
Confidence 46899999999999977764 34666666666666654
No 12
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=60.48 E-value=4 Score=35.24 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=20.6
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031659 24 KFSFRGVDLDALLD-MSTDELAKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ .++||.+-||
T Consensus 26 ~L~YRGy~i~~La~~~~fEeva~LL 50 (373)
T 1vgp_A 26 RLYYRGYSIYDLAEFSNFEEVSYLI 50 (373)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEEcCeeHHHHHccCCHHHHHHHH
Confidence 48899999999987 6799988775
No 13
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima}
Probab=60.44 E-value=4 Score=35.21 Aligned_cols=24 Identities=21% Similarity=0.540 Sum_probs=20.8
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031659 24 KFSFRGVDLDALLD-MSTDELAKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ .++||.+-||
T Consensus 25 ~L~YRGy~i~dLa~~~~feeva~LL 49 (367)
T 2p2w_A 25 RLYYRGIPVEELAEKSTFEETAYFL 49 (367)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEECCeeHHHHHcCCCHHHHHHHH
Confidence 48899999999987 6899988775
No 14
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=60.38 E-value=4 Score=35.24 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.6
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031659 24 KFSFRGVDLDALLD-MSTDELAKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ .++||.+-||
T Consensus 28 ~L~YRGy~i~dLa~~~~fEeva~LL 52 (378)
T 1a59_A 28 SLLYRGYPVQELAAKCSFEQVAYLL 52 (378)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred eEEEcCccHHHHHhcCCHHHHHHHH
Confidence 48899999999987 6799988775
No 15
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=60.31 E-value=4 Score=35.31 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.5
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031659 24 KFSFRGVDLDALLD-MSTDELAKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ .++||.+-||
T Consensus 26 ~L~YRGy~i~dLa~~~~fEeva~LL 50 (377)
T 1iom_A 26 KLYYYGIPIQELAEKSSFEETTFLL 50 (377)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEEcCeeHHHHHccCCHHHHHHHH
Confidence 48899999999987 6799988774
No 16
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=60.19 E-value=4 Score=35.21 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=20.6
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031659 24 KFSFRGVDLDALLD-MSTDELAKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ .++||.+-||
T Consensus 24 ~L~YRGy~i~~La~~~~fEeva~LL 48 (371)
T 1aj8_A 24 KLYYRGYSVEELAELSTFEEVVYLL 48 (371)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEEcCccHHHHHccCCHHHHHHHH
Confidence 47899999999987 6799988775
No 17
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=58.56 E-value=2.8 Score=30.01 Aligned_cols=31 Identities=32% Similarity=0.588 Sum_probs=24.4
Q ss_pred hHHhcCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHH
Q 031659 33 DALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRK 72 (155)
Q Consensus 33 d~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrk 72 (155)
|+|..||..||-.++ +|+++.+...|+..|-
T Consensus 1 deLv~msVreLN~~L---------~gls~eev~~lKq~RR 31 (90)
T 2wt7_B 1 DQLVSMSVRELNRHL---------RGFTKDEVIRLKQKRR 31 (90)
T ss_dssp CHHHHSCHHHHHTTC---------TTCCHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHH---------cCCCHHHHHHHHHHHH
Confidence 689999999985544 5888888888887764
No 18
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum}
Probab=58.39 E-value=4.5 Score=35.46 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=20.4
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031659 24 KFSFRGVDLDALLD-MSTDELAKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ .++||.+-||
T Consensus 45 ~L~YRGy~i~dLa~~~~fEeva~LL 69 (409)
T 2ibp_A 45 ILWYRGYRIEELARLSTYEEVSYLI 69 (409)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEEcCccHHHHHccCCHHHHHHHH
Confidence 48899999999988 5789987774
No 19
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=56.51 E-value=8.3 Score=27.77 Aligned_cols=38 Identities=18% Similarity=0.490 Sum_probs=30.4
Q ss_pred cCChhHHhcCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHh
Q 031659 29 GVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKA 73 (155)
Q Consensus 29 G~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrka 73 (155)
.++.||+.+||.+||-+++. ..+|+..|..++..+|.-
T Consensus 34 Pfs~~~Iv~lpv~efn~ll~-------~~~Ls~~Ql~lIrdiRRR 71 (91)
T 2kz5_A 34 PFPTDKIVNLPVDDFNELLA-------RYPLTESQLALVRDIRRR 71 (91)
T ss_dssp SSCHHHHHHSCHHHHHHHHH-------HSCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHCcHHHHHHHHH-------HcCCCHHHHHHHHHHHHH
Confidence 35889999999999977664 347888888999988743
No 20
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis}
Probab=56.18 E-value=5.1 Score=34.53 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.3
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031659 24 KFSFRGVDLDALLD-MSTDELAKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ -++||.+-||
T Consensus 24 ~L~YRGy~i~dLa~~~~fEeva~LL 48 (363)
T 2c6x_A 24 RLIYRGHHAKDIALNHSFEEAAYLI 48 (363)
T ss_dssp EEEETTEEHHHHHHHSCHHHHHHHH
T ss_pred EEEEcCccHHHHHccCCHHHHHHHH
Confidence 48899999999988 5789987774
No 21
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=55.93 E-value=5.2 Score=34.58 Aligned_cols=24 Identities=33% Similarity=0.663 Sum_probs=20.5
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031659 24 KFSFRGVDLDALLD-MSTDELAKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ -++||.+-||
T Consensus 28 ~L~YRGy~i~dLa~~~~fEeva~LL 52 (378)
T 1vgm_A 28 ILRYRGYDINDLVNYASYEELIHLM 52 (378)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred eEEEcCeeHHHHHhcCCHHHHHHHH
Confidence 48899999999988 5789988774
No 22
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1
Probab=55.91 E-value=5.2 Score=34.56 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=20.7
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031659 24 KFSFRGVDLDALLD-MSTDELAKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ -++||.+-||
T Consensus 27 ~L~YRGy~i~dLa~~~~feeva~LL 51 (377)
T 1o7x_A 27 ILRYRGYNIEDLVNYGSYEETIYLM 51 (377)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEECCccHHHHHcCCCHHHHHHHH
Confidence 48899999999988 5799988875
No 23
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=54.30 E-value=5.1 Score=35.13 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=20.4
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031659 24 KFSFRGVDLDALLD-MSTDELAKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ -++||.+-||
T Consensus 56 ~L~YRGy~I~dLa~~~~fEevayLL 80 (404)
T 3o8j_A 56 DLHYRGYDILDLAEHCEFEEVAHLL 80 (404)
T ss_dssp CEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEECCeEHHHHHhcCCHHHHHHHH
Confidence 58999999999976 6789988775
No 24
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=52.78 E-value=5.7 Score=34.46 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=21.1
Q ss_pred eeeeeecCChhHHhc-CCHHHHHHHH
Q 031659 23 KKFSFRGVDLDALLD-MSTDELAKLF 47 (155)
Q Consensus 23 ~kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
....|||++++||.+ -+.||.+-||
T Consensus 29 g~L~YRGy~I~dLa~~~~feev~yLL 54 (375)
T 3tqg_A 29 HGLTYRGYRIEDLAANATFEEVAYLL 54 (375)
T ss_dssp CCEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred CEEEECCeeHHHHHhcCCHHHHHHHH
Confidence 358999999999975 6799988776
No 25
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=51.99 E-value=6.6 Score=34.61 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=20.4
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031659 24 KFSFRGVDLDALLD-MSTDELAKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ -++||.+-||
T Consensus 72 ~L~YRGy~I~dLa~~~~fEevayLL 96 (414)
T 3hwk_A 72 SLTYRGYPVQDLAARCSFEQVAFLL 96 (414)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEECCeEHHHHHhcCCHHHHHHHH
Confidence 58999999999975 6799987776
No 26
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis}
Probab=49.09 E-value=7 Score=34.58 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=20.1
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031659 24 KFSFRGVDLDALLD-MSTDELAKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ -+.||.+-||
T Consensus 74 ~L~YRGy~I~dLa~~~~feevayLL 98 (427)
T 3msu_A 74 VLLHRGYPIEEWTQKSNYRTLCYAL 98 (427)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEECCeEHHHHhccCCHHHHHHHH
Confidence 47999999999976 6788887776
No 27
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A
Probab=48.47 E-value=7.1 Score=34.48 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.1
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031659 24 KFSFRGVDLDALLD-MSTDELAKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ -+.||.+-||
T Consensus 65 ~L~YRGy~I~dLa~~~~feevayLL 89 (426)
T 3l96_A 65 ILLHRGFPIDQLATDSNYLEVCYIL 89 (426)
T ss_dssp EEEETTEEHHHHHHHSCHHHHHHHH
T ss_pred EEEECCeEHHHHHhcCCHHHHHHHH
Confidence 47999999999976 5788887776
No 28
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti}
Probab=48.47 E-value=7.2 Score=34.46 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.1
Q ss_pred eeeeecCChhHHhc-CCHHHHHHHH
Q 031659 24 KFSFRGVDLDALLD-MSTDELAKLF 47 (155)
Q Consensus 24 kFtYRG~~ld~L~~-ms~eel~~L~ 47 (155)
...|||++++||.+ -++||.+-||
T Consensus 73 ~L~YRGy~I~dLa~~~~feEvayLL 97 (436)
T 2h12_A 73 VLLHRGYPIAQLAENASYEEVIYLL 97 (436)
T ss_dssp EEEETTEEHHHHHHHCCHHHHHHHH
T ss_pred EEEECCeEHHHHHhcCCHHHHHHHH
Confidence 37899999999988 5799987774
No 29
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=45.56 E-value=12 Score=24.09 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=20.3
Q ss_pred ChhHHhcCCHHHHHHHHHHHH-hhhh
Q 031659 31 DLDALLDMSTDELAKLFSARA-RRRF 55 (155)
Q Consensus 31 ~ld~L~~ms~eel~~L~~ar~-RR~~ 55 (155)
+++++.++|.|||.++++... -+.+
T Consensus 26 s~~~i~~As~eeL~~vig~~~~A~~I 51 (63)
T 2a1j_A 26 NIAELAALSQDELTSILGNAANAKQL 51 (63)
T ss_dssp SHHHHHTCCHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHCCHHHHHHHcCchHHHHHH
Confidence 899999999999999977554 3443
No 30
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=44.73 E-value=16 Score=26.22 Aligned_cols=37 Identities=14% Similarity=0.481 Sum_probs=30.4
Q ss_pred CChhHHhcCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHh
Q 031659 30 VDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKA 73 (155)
Q Consensus 30 ~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrka 73 (155)
++.||+.+||.+||-+|+. ..+|+..|..|+..+|..
T Consensus 35 FsvdqIvnLpv~eFn~lL~-------~~~Lt~~Ql~lIrdiRRR 71 (90)
T 2lz1_A 35 FPVEKIINLPVVDFNEMMS-------KEQFNEAQLALIRDIRRR 71 (90)
T ss_dssp SCHHHHHHSCHHHHHHHHH-------HSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHCCHHHHHHHHH-------HcCCCHHHHHHHHHHHHh
Confidence 4889999999999977765 347888888999988864
No 31
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=44.53 E-value=11 Score=25.92 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=24.6
Q ss_pred ChhHHhcCCHHHHHHHHHHHH-hhhhhcCCC
Q 031659 31 DLDALLDMSTDELAKLFSARA-RRRFQRGLK 60 (155)
Q Consensus 31 ~ld~L~~ms~eel~~L~~ar~-RR~~~Rgl~ 60 (155)
++++|.++|.|||.++++... -+.+..-|.
T Consensus 40 Sl~~i~~AS~eEL~~vig~~~~A~~I~~~l~ 70 (84)
T 1z00_B 40 NIAELAALSQDELTSILGNAANAKQLYDFIH 70 (84)
T ss_dssp CHHHHHHSCHHHHHHHHSCHHHHHHHHHHHT
T ss_pred CHHHHHHCCHHHHHHHhCchHHHHHHHHHHH
Confidence 999999999999999998776 566655443
No 32
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Probab=42.17 E-value=7.8 Score=34.19 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=19.1
Q ss_pred eeeecCChhHHhcC----------CHHHHHHHH
Q 031659 25 FSFRGVDLDALLDM----------STDELAKLF 47 (155)
Q Consensus 25 FtYRG~~ld~L~~m----------s~eel~~L~ 47 (155)
..|||++++||.+- +.||++-||
T Consensus 62 l~YRGy~I~dLa~~~~~~~~~~~~~feev~yLL 94 (435)
T 1csh_A 62 IRFRGFSIPECQKLLPKAGGGEEPLPEGLFWLL 94 (435)
T ss_dssp EEETTEEHHHHHHHSCBCTTCCSBCHHHHHHHH
T ss_pred eeECCccHHHHHhhCcccccCCcCCHHHHHHHH
Confidence 58999999999985 388877764
No 33
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=41.75 E-value=13 Score=28.76 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=17.2
Q ss_pred cCChhHHhcCCHHHHHHHH
Q 031659 29 GVDLDALLDMSTDELAKLF 47 (155)
Q Consensus 29 G~~ld~L~~ms~eel~~L~ 47 (155)
..+||+|++||-+|+-++|
T Consensus 106 ~~TLe~LLemsd~evr~~L 124 (149)
T 2lpe_A 106 ELTLDALLEMDEAKAKEML 124 (149)
T ss_dssp TCSHHHHTTSCHHHHHHHH
T ss_pred hccHHHHHhcCHHHHHHHH
Confidence 5699999999999998887
No 34
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=36.22 E-value=34 Score=25.17 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=28.4
Q ss_pred eeeeeee-cCChhHHhcCCHHHHHHHHHHHHhhhhh
Q 031659 22 FKKFSFR-GVDLDALLDMSTDELAKLFSARARRRFQ 56 (155)
Q Consensus 22 f~kFtYR-G~~ld~L~~ms~eel~~L~~ar~RR~~~ 56 (155)
-+.|.|+ +-++.+|..++.+|+-.++.....++..
T Consensus 73 GkrlvY~F~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 108 (110)
T 1awc_A 73 GKRFVYKFVCDLKTLIGYSAAELNRLVIECEQKKLA 108 (110)
T ss_dssp TSTTEEEECSCHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCeeEEecCCCHHHHhCCCHHHHHHHHHHHhhhhhc
Confidence 3568888 6899999999999999988876665544
No 35
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=35.13 E-value=12 Score=27.26 Aligned_cols=14 Identities=36% Similarity=0.805 Sum_probs=11.9
Q ss_pred cCChhHHhcCCHHH
Q 031659 29 GVDLDALLDMSTDE 42 (155)
Q Consensus 29 G~~ld~L~~ms~ee 42 (155)
-+|+|+|++|+.|+
T Consensus 53 eIDiDeLLDl~sde 66 (99)
T 1j2m_A 53 EVNIDELLELESEE 66 (99)
T ss_dssp SCCSHHHHCCTTTT
T ss_pred ccCHHHHhcCCcHH
Confidence 57999999997766
No 36
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=27.24 E-value=29 Score=22.68 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=17.5
Q ss_pred CceeccCccccEEEEecCCcccc
Q 031659 92 NMIIVPEMIGSIIGVYNGKTFNQ 114 (155)
Q Consensus 92 ~~~IlP~mVG~~v~VyNGK~f~~ 114 (155)
....+|-.|-..-|.|+|++-+.
T Consensus 37 Ge~~~~H~vc~~CG~Y~gr~V~~ 59 (60)
T 3v2d_5 37 KAMKPPHTVCPECGYYAGRKVLE 59 (60)
T ss_dssp CCEECTTSCCTTTCEETTEECCC
T ss_pred CCeecceEEcCCCCcCCCEEeec
Confidence 34678888877778999998664
No 37
>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}
Probab=24.18 E-value=37 Score=24.55 Aligned_cols=40 Identities=15% Similarity=0.289 Sum_probs=31.7
Q ss_pred cccceeee---eeecCChhHHhcCCHHHHHHHHHHHHhhhhhc
Q 031659 18 KKRTFKKF---SFRGVDLDALLDMSTDELAKLFSARARRRFQR 57 (155)
Q Consensus 18 Kkrtf~kF---tYRG~~ld~L~~ms~eel~~L~~ar~RR~~~R 57 (155)
+++.|-.+ .+-+++=.||+.|+-+||.+++|+...|-.++
T Consensus 34 ~~kgFS~~tv~~Lg~ltGaqLf~Ltk~eL~~vCg~EG~Rlysq 76 (99)
T 1wwu_A 34 EAKAFSPRIVENLGILTGPQLFSLNKEELKKVCGEEGVRVYSQ 76 (99)
T ss_dssp HHHTCCTTHHHHTTSSCHHHHHTCCHHHHHHHHTTTHHHHHHH
T ss_pred HHcCCCHHHHHHHcCCCHHHHHcCCHHHHHHHCcchhHHHHHH
Confidence 34567777 46678889999999999999999877776543
No 38
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=24.15 E-value=48 Score=18.93 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=14.6
Q ss_pred hhHHhcCCHHHHHHHHHH
Q 031659 32 LDALLDMSTDELAKLFSA 49 (155)
Q Consensus 32 ld~L~~ms~eel~~L~~a 49 (155)
+|+|.+|+.-|+.+|..+
T Consensus 7 ie~i~~lTvlEl~eLvk~ 24 (30)
T 1zav_U 7 IEAIEKLTVSELAELVKK 24 (30)
T ss_dssp HHHHHHSBHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHH
Confidence 578889999888888764
No 39
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=23.07 E-value=24 Score=26.41 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=12.4
Q ss_pred eeeecCChhHHhcCCHHHHHH
Q 031659 25 FSFRGVDLDALLDMSTDELAK 45 (155)
Q Consensus 25 FtYRG~~ld~L~~ms~eel~~ 45 (155)
+.|-+-+..+.+|||+||+++
T Consensus 8 ~~~~~~~m~~~ld~sLDdii~ 28 (177)
T 2f3j_A 8 QQMGRDPMADKMDMSLDDIIK 28 (177)
T ss_dssp -------CCCSSSCCHHHHHH
T ss_pred eeccccchhhhhccCHHHHHh
Confidence 455556667889999999985
No 40
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=22.76 E-value=62 Score=20.81 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=15.3
Q ss_pred CChhHHhcCCHHHHHHHHH
Q 031659 30 VDLDALLDMSTDELAKLFS 48 (155)
Q Consensus 30 ~~ld~L~~ms~eel~~L~~ 48 (155)
-|+|-|.++|++||.+-+.
T Consensus 2 gdf~fLk~ls~eEL~~rl~ 20 (51)
T 2jo8_A 2 SDYEFLKSWTVEDLQKRLL 20 (51)
T ss_dssp CCCGGGGGSCHHHHHHHHH
T ss_pred CccHHHHhCCHHHHHHHHH
Confidence 3788999999999876653
No 41
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=21.29 E-value=33 Score=23.06 Aligned_cols=25 Identities=16% Similarity=0.521 Sum_probs=20.3
Q ss_pred eeeeeeecCC-hhHHhcCCHHHHHHH
Q 031659 22 FKKFSFRGVD-LDALLDMSTDELAKL 46 (155)
Q Consensus 22 f~kFtYRG~~-ld~L~~ms~eel~~L 46 (155)
...|.--|++ ++.|..|+.++|.+|
T Consensus 32 ~~~F~~~gid~~~~L~~lt~~DL~~l 57 (82)
T 2kso_A 32 TEHFMAAGYTAIEKVVQMTNDDIKRI 57 (82)
T ss_dssp HHHHHHTTCCSHHHHTTCCHHHHHHH
T ss_pred HHHHHHcCCChHHHHHhCCHHHHHHC
Confidence 3456677888 999999999998665
No 42
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=21.07 E-value=60 Score=22.73 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=15.2
Q ss_pred cCChhHHhcCCHHHHHHHHHH
Q 031659 29 GVDLDALLDMSTDELAKLFSA 49 (155)
Q Consensus 29 G~~ld~L~~ms~eel~~L~~a 49 (155)
|+...||.+||.|||.+.+..
T Consensus 2 ~MKa~ELR~~S~eEL~~~L~e 22 (86)
T 3jyw_X 2 GVKAYELRTKSKEQLASQLVD 22 (86)
T ss_dssp CSCHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHhCCHHHHHHHHHH
Confidence 456778888888887766554
No 43
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=20.85 E-value=37 Score=21.63 Aligned_cols=28 Identities=36% Similarity=0.591 Sum_probs=19.1
Q ss_pred cceeeeeeecCChhHHhcCCHHHHHHHHHH
Q 031659 20 RTFKKFSFRGVDLDALLDMSTDELAKLFSA 49 (155)
Q Consensus 20 rtf~kFtYRG~~ld~L~~ms~eel~~L~~a 49 (155)
+.|.+ .+|||+.+|--+. +|++++-+-+
T Consensus 11 k~F~~-~~rGY~~~EVD~F-Ld~v~~~~~~ 38 (57)
T 2wuj_A 11 KTFTK-SFRGYDEDEVNEF-LAQVRKDYEI 38 (57)
T ss_dssp CCCCE-ETTEEEHHHHHHH-HHHHHHHHHH
T ss_pred CcCCC-CCCCcCHHHHHHH-HHHHHHHHHH
Confidence 46765 6899988887666 6666555543
No 44
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=20.12 E-value=35 Score=23.36 Aligned_cols=26 Identities=35% Similarity=0.592 Sum_probs=20.6
Q ss_pred ceeeeeeecC-ChhHHhcCCHHHHHHH
Q 031659 21 TFKKFSFRGV-DLDALLDMSTDELAKL 46 (155)
Q Consensus 21 tf~kFtYRG~-~ld~L~~ms~eel~~L 46 (155)
....|.-.|+ +++.|..|+.++|.+|
T Consensus 41 Y~~~F~~~g~~~~~~l~~lt~~DL~~l 67 (94)
T 1b0x_A 41 YKDNFTAAGYTTLEAVVHMSQDDLARI 67 (94)
T ss_dssp GHHHHHHTTCCSHHHHTTCCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHhhCCHHHHHHC
Confidence 3345666788 8999999999998765
Done!