BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031660
(155 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FJW4|NDUS4_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1
Length = 154
Score = 215 bits (547), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/143 (72%), Positives = 122/143 (85%), Gaps = 4/143 (2%)
Query: 13 RTVR--GTVCPFSRAFSADALVE--VKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGS 68
RT+R T+ +R F+ DA+VE K GEIG VSGIPEEHL R+V+IY+PARTATQ GS
Sbjct: 9 RTIRIAATLRRVARPFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGS 68
Query: 69 GKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVR 128
GKLG+WKINF+ST KWENPLMGWTSTGDPYANVGD+ L+FDS+EAA+ FAERHGW+Y V+
Sbjct: 69 GKLGKWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDYKVK 128
Query: 129 KPHRPLLKVKSYADNFKWKGPPK 151
KP+ PLLKVKSY+DNFKWKG P+
Sbjct: 129 KPNTPLLKVKSYSDNFKWKGNPQ 151
>sp|Q5XIF3|NDUS4_RAT NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Rattus norvegicus GN=Ndufs4 PE=1 SV=1
Length = 175
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 75/125 (60%), Gaps = 9/125 (7%)
Query: 23 SRAFSADALVEVKPGEIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMST 81
++ + D ++V P ++G+PEEH++ R+V I+ PAR Q G +WK+ F +
Sbjct: 50 TQLITVDEKLDVTP-----LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTR 104
Query: 82 QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYA 141
++WENPLMGW ST DP +N+ L+F +KE A FAE+HGW Y V P K KSY
Sbjct: 105 ERWENPLMGWASTADPLSNM---VLTFSAKEDAVAFAEKHGWSYDVEGRKVPKPKSKSYG 161
Query: 142 DNFKW 146
NF W
Sbjct: 162 ANFSW 166
>sp|O43181|NDUS4_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1
Length = 175
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 70/110 (63%), Gaps = 4/110 (3%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F + ++WENPLMGW ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
P +N+ L+F +KE A FAE++GW Y + + P K KSY NF W
Sbjct: 120 PLSNM---VLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166
>sp|Q0MQH0|NDUS4_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS4 PE=2
SV=1
Length = 175
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 70/110 (63%), Gaps = 4/110 (3%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F + ++WENPLMGW ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
P +N+ L+F +KE A FAE++GW Y + + P K KSY NF W
Sbjct: 120 PLSNM---VLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166
>sp|Q66XS7|NDUS4_GECJA NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Gecko japonicus GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 71/110 (64%), Gaps = 4/110 (3%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F + ++WENPLMGW+ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWSSTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
P +N+ L+F +KE A FAE++GW + V + P K KSY NF W
Sbjct: 120 PLSNL---VLTFSTKEDAVAFAEKNGWSFDVEERKVPKPKSKSYGANFSW 166
>sp|Q02375|NDUS4_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Bos taurus GN=NDUFS4 PE=1 SV=1
Length = 175
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 4/110 (3%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+ I+ PAR Q G +WK+ F + ++WENPLMGW ST D
Sbjct: 60 DITTITGVPEEHIKTRKARIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
P +N+ L+F +KE A FAE++GW Y V + P K KSY NF W
Sbjct: 120 PLSNL---VLTFSTKEDAVAFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166
>sp|P0CB96|NDUS4_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Pongo pygmaeus GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 70/110 (63%), Gaps = 4/110 (3%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F + ++WENPLMGW ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
P +N+ L+F +KE A FAE++GW Y V + P K KSY NF W
Sbjct: 120 PLSNM---VLTFRTKEDAVSFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166
>sp|P0CB95|NDUS4_PONAB NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Pongo abelii GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 70/110 (63%), Gaps = 4/110 (3%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F + ++WENPLMGW ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
P +N+ L+F +KE A FAE++GW Y V + P K KSY NF W
Sbjct: 120 PLSNM---VLTFRTKEDAVSFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166
>sp|Q0MQH1|NDUS4_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Pan troglodytes GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 4/110 (3%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F + ++WENPLMGW ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
P +N+ L+ +KE A FAE++GW Y + + P K KSY NF W
Sbjct: 120 PLSNM---VLTXSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166
>sp|Q9CXZ1|NDUS4_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Mus musculus GN=Ndufs4 PE=1 SV=3
Length = 175
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 70/110 (63%), Gaps = 4/110 (3%)
Query: 38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
+I ++G+PEEH++ R+V I+ PAR Q G +WK+ F + ++WENPLMGW ST D
Sbjct: 60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
P +N+ L+F +KE A FAE++GW Y V + P K KSY NF W
Sbjct: 120 PLSNM---VLTFSAKEDAIAFAEKNGWSYDVEEKKVPKPKSKSYGANFSW 166
>sp|P25711|NDUS4_NEUCR NADH-ubiquinone oxidoreductase 21 kDa subunit, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-21 PE=1 SV=2
Length = 218
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 68/110 (61%), Gaps = 7/110 (6%)
Query: 40 GMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQK---WENPLMGWTSTGD 96
+VSG P E R V IY P++ ATQ + ++ W++++ +K WEN LMGW S+GD
Sbjct: 102 AVVSGAPMELQARTVRIYLPSKPATQSSNSRV-LWRMDWDVLEKGHRWENELMGWQSSGD 160
Query: 97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 146
V L+F +KE A +FAE+ G+EY V++P++ K+YA+NF +
Sbjct: 161 ---FVQGTHLTFRTKEEAIQFAEKQGYEYFVQEPNQRHFTPKAYANNFLY 207
>sp|P80268|NUO2_SOLTU NADH-ubiquinone oxidoreductase 18 kDa subunit (Fragment)
OS=Solanum tuberosum PE=1 SV=2
Length = 30
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/30 (80%), Positives = 29/30 (96%)
Query: 27 SADALVEVKPGEIGMVSGIPEEHLRRRVVI 56
+++ALVE+KPGEIGMVSGIP+EHLRR VVI
Sbjct: 1 ASEALVEIKPGEIGMVSGIPDEHLRRFVVI 30
>sp|Q8T1V6|NDUS4_DICDI NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Dictyostelium discoideum GN=ndufs4 PE=3
SV=2
Length = 190
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 52 RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSK 111
+ V IY P+R Q G+ + +W I KW + LMGW ++ D + L F+S+
Sbjct: 84 KSVNIYRPSRNTMQTGTLRTKKWVIELPFNPKWNDRLMGWWASKDT---LNQLNLRFNSE 140
Query: 112 EAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKWKG 148
A + + G Y + + L K K Y F+++G
Sbjct: 141 TDAVAYCKEIGLNYNIVEEDVTLRKKKKYGHRFRYRG 177
>sp|Q6BTX0|ATG2_DEBHA Autophagy-related protein 2 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=ATG2 PE=3 SV=2
Length = 1887
Score = 29.6 bits (65), Expect = 8.0, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 80 STQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKS 139
S+Q EN + + A + SFD + + A+R+ E K + L K K
Sbjct: 1167 SSQSLENGFNKLSISESDNAKDDASSFSFDEEHFSSNGADRNNTEVFPIKMNINLSKTKI 1226
Query: 140 YA-DNFKWKGPPKT 152
Y D F WKG KT
Sbjct: 1227 YLYDGFDWKGTRKT 1240
>sp|Q3JAW7|HEMH_NITOC Ferrochelatase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
11848) GN=hemH PE=3 SV=1
Length = 368
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 60 ARTATQQGSGKLGRWKINFMST---QKWENP-----LMGWTSTGDPYANVGDAGLSFDSK 111
AR ++ K G W+I F S ++W P L W G +V G + D
Sbjct: 230 ARLLAERLGLKEGEWQIAFQSRFGREEWLKPYADHLLQAWAEAGIKRVDVVCPGFAVDCL 289
Query: 112 EAAREFAERH 121
E E A+R+
Sbjct: 290 ETLEEMAQRN 299
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,507,362
Number of Sequences: 539616
Number of extensions: 2498387
Number of successful extensions: 4581
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4547
Number of HSP's gapped (non-prelim): 17
length of query: 155
length of database: 191,569,459
effective HSP length: 107
effective length of query: 48
effective length of database: 133,830,547
effective search space: 6423866256
effective search space used: 6423866256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)