Query 031660
Match_columns 155
No_of_seqs 150 out of 363
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 03:37:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3389 NADH:ubiquinone oxidor 100.0 3.1E-55 6.8E-60 347.0 9.1 131 22-153 42-176 (178)
2 PF04800 ETC_C1_NDUFA4: ETC co 100.0 1.9E-51 4.1E-56 305.9 7.4 96 52-150 1-97 (101)
3 PF09954 DUF2188: Uncharacteri 81.5 2.2 4.8E-05 28.3 3.3 36 105-140 22-62 (62)
4 PHA02552 4 head completion pro 78.6 1.9 4.2E-05 34.5 2.7 70 52-132 60-141 (151)
5 PRK05370 argininosuccinate syn 76.7 2.3 5E-05 39.4 3.0 21 107-127 165-185 (447)
6 PF08727 P3A: Poliovirus 3A pr 74.2 2 4.3E-05 29.5 1.4 16 112-127 30-45 (57)
7 PF05573 NosL: NosL; InterPro 73.4 3 6.5E-05 32.4 2.5 50 72-122 77-135 (149)
8 PF08722 Tn7_Tnp_TnsA_N: TnsA 65.8 7.1 0.00015 27.2 2.8 19 111-129 69-87 (88)
9 PF03462 PCRF: PCRF domain; I 60.7 6.7 0.00014 29.3 2.0 15 115-129 73-87 (115)
10 PRK04527 argininosuccinate syn 59.4 8.2 0.00018 35.2 2.7 20 107-126 150-169 (400)
11 PF11360 DUF3110: Protein of u 56.7 14 0.00031 26.8 3.1 25 107-131 53-77 (86)
12 PF06194 Phage_Orf51: Phage Co 46.7 18 0.00038 26.4 2.2 23 105-127 51-73 (80)
13 PF10075 PCI_Csn8: COP9 signal 46.0 13 0.00029 28.0 1.6 20 106-126 107-126 (143)
14 PF13031 DUF3892: Protein of u 45.3 20 0.00043 25.1 2.3 22 107-128 29-50 (85)
15 KOG4748 Subunit of Golgi manno 45.3 15 0.00032 33.4 2.0 23 110-132 127-149 (364)
16 PF07045 DUF1330: Protein of u 45.2 18 0.00039 24.1 2.0 14 105-118 43-56 (65)
17 PF11360 DUF3110: Protein of u 44.3 18 0.00039 26.2 2.0 16 105-120 26-41 (86)
18 PF02844 GARS_N: Phosphoribosy 44.2 29 0.00063 25.9 3.1 29 105-133 45-73 (100)
19 KOG2854 Possible pfkB family c 42.9 18 0.0004 32.6 2.2 22 105-126 216-237 (343)
20 PF12518 DUF3721: Protein of u 42.4 25 0.00053 21.8 2.1 16 108-123 1-16 (34)
21 PF01071 GARS_A: Phosphoribosy 40.5 26 0.00057 28.9 2.7 26 105-130 20-45 (194)
22 PRK05773 3,4-dihydroxy-2-butan 38.1 28 0.0006 29.4 2.5 18 109-126 191-208 (219)
23 PF07862 Nif11: Nitrogen fixat 37.1 17 0.00037 22.9 0.8 21 108-128 26-46 (49)
24 COG0108 RibB 3,4-dihydroxy-2-b 36.5 30 0.00064 29.2 2.4 19 109-127 172-190 (203)
25 PF01693 Cauli_VI: Caulimoviru 36.4 27 0.00059 21.8 1.7 13 105-117 32-44 (44)
26 PF08803 ydhR: Putative mono-o 35.9 16 0.00035 27.4 0.6 29 91-121 38-66 (97)
27 PF03682 UPF0158: Uncharacteri 33.9 31 0.00067 27.5 2.0 20 111-130 127-146 (163)
28 PLN00139 hypothetical protein; 33.2 38 0.00082 29.6 2.6 26 106-131 195-220 (320)
29 PF03793 PASTA: PASTA domain; 33.0 50 0.0011 21.1 2.6 22 109-130 9-30 (63)
30 PRK00823 phhB pterin-4-alpha-c 32.8 41 0.0009 24.2 2.4 35 86-122 16-50 (97)
31 PF10566 Glyco_hydro_97: Glyco 31.6 49 0.0011 28.7 3.0 25 105-129 28-52 (273)
32 cd00913 PCD_DCoH_subfamily_a P 31.6 62 0.0014 22.2 3.0 29 90-120 1-29 (76)
33 PRK13864 type IV secretion sys 30.8 71 0.0015 27.5 3.8 25 105-129 69-96 (245)
34 PF03108 DBD_Tnp_Mut: MuDR fam 30.5 84 0.0018 20.6 3.5 33 105-137 7-43 (67)
35 PRK08179 prfH peptide chain re 30.5 39 0.00084 28.2 2.1 18 115-132 27-44 (200)
36 COG0137 ArgG Argininosuccinate 29.4 40 0.00086 31.2 2.2 21 107-128 151-171 (403)
37 COG0216 PrfA Protein chain rel 28.9 44 0.00095 30.5 2.4 19 115-133 139-157 (363)
38 PF05637 Glyco_transf_34: gala 28.4 36 0.00078 28.3 1.6 18 112-129 31-48 (239)
39 PF09383 NIL: NIL domain; Int 28.3 62 0.0013 21.7 2.5 18 111-128 59-76 (76)
40 smart00156 PP2Ac Protein phosp 27.8 1.1E+02 0.0023 26.0 4.4 41 83-130 176-219 (271)
41 COG5470 Uncharacterized conser 27.8 54 0.0012 24.7 2.3 20 95-117 50-69 (96)
42 cd00914 PCD_DCoH_subfamily_b P 27.7 58 0.0013 22.4 2.3 29 90-120 1-29 (76)
43 cd01206 Homer Homer type EVH1 27.3 63 0.0014 24.9 2.6 23 96-120 79-102 (111)
44 KOG0237 Glycinamide ribonucleo 27.3 61 0.0013 32.0 3.1 76 72-150 17-94 (788)
45 smart00461 WH1 WASP homology r 27.2 52 0.0011 24.1 2.1 16 105-120 86-101 (106)
46 PRK11118 putative monooxygenas 27.2 66 0.0014 24.4 2.7 29 91-121 41-69 (100)
47 PF00568 WH1: WH1 domain; Int 26.9 54 0.0012 24.0 2.2 16 105-120 91-106 (111)
48 PF00076 RRM_1: RNA recognitio 26.8 72 0.0016 19.6 2.5 19 105-123 43-62 (70)
49 PF14259 RRM_6: RNA recognitio 26.5 58 0.0013 20.6 2.1 19 104-122 42-60 (70)
50 PRK09437 bcp thioredoxin-depen 26.3 72 0.0016 23.6 2.8 27 104-130 68-94 (154)
51 TIGR00506 ribB 3,4-dihydroxy-2 26.0 59 0.0013 27.0 2.5 19 108-126 172-190 (199)
52 COG0290 InfC Translation initi 26.0 1.1E+02 0.0024 25.3 4.0 37 105-141 30-68 (176)
53 TIGR03072 release_prfH putativ 25.7 52 0.0011 27.4 2.1 17 115-131 26-42 (200)
54 PLN00200 argininosuccinate syn 25.5 49 0.0011 30.2 2.1 20 107-126 152-171 (404)
55 PRK01792 ribB 3,4-dihydroxy-2- 25.5 61 0.0013 27.3 2.5 19 108-126 182-200 (214)
56 COG3341 Predicted double-stran 25.5 40 0.00087 28.9 1.4 14 107-120 39-52 (225)
57 cd00837 EVH1 EVH1 (Enabled, Va 25.0 62 0.0013 23.5 2.2 16 105-120 84-99 (104)
58 PRK13820 argininosuccinate syn 24.7 66 0.0014 29.2 2.7 18 110-127 148-165 (394)
59 KOG0097 GTPase Rab14, small G 24.4 56 0.0012 27.0 2.0 44 85-128 99-153 (215)
60 PF01329 Pterin_4a: Pterin 4 a 24.4 58 0.0013 23.3 1.9 30 87-120 16-46 (95)
61 PF02786 CPSase_L_D2: Carbamoy 24.2 74 0.0016 26.0 2.7 22 108-129 24-45 (211)
62 KOG1468 Predicted translation 23.9 77 0.0017 28.6 2.9 51 92-150 245-295 (354)
63 cd01207 Ena-Vasp Enabled-VASP- 23.9 61 0.0013 24.7 2.0 16 105-120 87-102 (111)
64 PF05198 IF3_N: Translation in 23.8 84 0.0018 22.1 2.6 28 105-132 24-51 (76)
65 COG4314 NosL Predicted lipopro 23.6 59 0.0013 26.8 2.0 22 106-127 131-152 (176)
66 PRK12354 carbamate kinase; Rev 23.6 71 0.0015 28.2 2.6 22 107-128 125-146 (307)
67 PF00926 DHBP_synthase: 3,4-di 23.3 74 0.0016 26.3 2.6 19 108-126 167-185 (194)
68 PF14657 Integrase_AP2: AP2-li 22.7 72 0.0016 19.8 1.9 13 108-120 24-36 (46)
69 PRK00910 ribB 3,4-dihydroxy-2- 22.6 75 0.0016 26.9 2.5 19 108-126 183-201 (218)
70 PF08759 DUF1792: Domain of un 22.4 47 0.001 28.3 1.3 26 40-65 125-153 (225)
71 smart00757 CRA CT11-RanBPM. pr 21.9 65 0.0014 22.1 1.7 17 110-126 2-18 (99)
72 PF12745 HGTP_anticodon2: Anti 21.8 97 0.0021 26.7 3.1 23 108-130 43-65 (273)
73 COG1225 Bcp Peroxiredoxin [Pos 21.6 68 0.0015 25.7 2.0 30 104-133 68-97 (157)
74 PRK00014 ribB 3,4-dihydroxy-2- 21.4 82 0.0018 26.9 2.5 19 108-126 187-205 (230)
75 PF10686 DUF2493: Protein of u 21.2 1E+02 0.0023 21.2 2.6 19 113-131 48-66 (71)
76 PF14542 Acetyltransf_CG: GCN5 21.1 87 0.0019 21.6 2.2 18 111-128 44-61 (78)
77 cd06576 PASTA_Pbp2x-like_1 PAS 21.0 1.5E+02 0.0033 17.5 3.1 22 109-130 8-29 (55)
78 PTZ00056 glutathione peroxidas 21.0 91 0.002 25.0 2.6 22 108-129 88-109 (199)
79 smart00481 POLIIIAc DNA polyme 20.9 1.4E+02 0.003 19.3 3.0 24 109-132 15-38 (67)
80 PF10009 DUF2252: Uncharacteri 20.7 60 0.0013 29.2 1.6 42 82-123 287-335 (385)
81 cd03421 SirA_like_N SirA_like_ 20.7 1.1E+02 0.0023 20.1 2.5 21 110-130 37-57 (67)
82 TIGR01465 cobM_cbiF precorrin- 20.6 1.3E+02 0.0029 23.9 3.5 33 89-129 74-106 (229)
83 PF09691 PulS_OutS: Bacterial 20.5 65 0.0014 24.5 1.6 15 112-126 53-67 (109)
84 PF12123 Amidase02_C: N-acetyl 20.2 1.2E+02 0.0027 19.6 2.6 18 110-127 28-45 (45)
85 COG0007 CysG Uroporphyrinogen- 20.0 1.3E+02 0.0028 25.9 3.4 31 94-132 89-119 (244)
No 1
>KOG3389 consensus NADH:ubiquinone oxidoreductase, NDUFS4/18 kDa subunit [Energy production and conversion]
Probab=100.00 E-value=3.1e-55 Score=347.00 Aligned_cols=131 Identities=60% Similarity=1.081 Sum_probs=123.8
Q ss_pred ccccccccccc-c--cccCccccccCCCcccc-cceEEEecCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCCc
Q 031660 22 FSRAFSADALV-E--VKPGEIGMVSGIPEEHL-RRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDP 97 (155)
Q Consensus 22 ~~r~fs~d~~~-~--~~~~~~~~vsG~P~e~~-~r~vrIy~Pak~a~QSG~~~t~~W~LeFe~~~~w~nPLMGWtss~D~ 97 (155)
+.|+|+.|+.+ + .+-++++-|+|+|+||+ .|+||||.|+|++||||.+|+++|+|||+.+.+||||||||+|++||
T Consensus 42 la~~~~~Dak~ve~d~kld~i~~v~GvPeeH~~sRkvrIf~PAR~~tQSg~gntkkWkiefd~r~rWENPLMGWtsTaDP 121 (178)
T KOG3389|consen 42 LARPFATDAKVVESDYKLDEIGKVSGVPEEHLDSRKVRIFSPARTATQSGSGNTKKWKIEFDSRLRWENPLMGWTSTADP 121 (178)
T ss_pred ccccccccceeEeehhhhcccccccCCChHHhcceeEEEecchhhhhhcccCCccceEEEecchhhccCccccccccCCc
Confidence 47899999955 4 45678999999999999 69999999999999999999999999999999999999999999999
Q ss_pred cCccCCceeecCCHHHHHHHHHHcCccEEEecCCCCccCcccccccCCCCCCCCCC
Q 031660 98 YANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKWKGPPKTD 153 (155)
Q Consensus 98 ~sqv~~~~L~F~SkE~AI~faek~Gw~Y~V~~p~~~~~~~KsYadNF~~~g~p~~~ 153 (155)
|+||+ +.|.|+|+||||.|||||||+|.|++|+.+++++|+|||||+|||++.-+
T Consensus 122 lsNvg-m~L~F~tkEdA~sFaEkngW~ydveep~~pk~K~KsYg~NFsWn~rtr~~ 176 (178)
T KOG3389|consen 122 LSNVG-MALAFDTKEDAKSFAEKNGWDYDVEEPNTPKLKVKSYGDNFSWNGRTRPE 176 (178)
T ss_pred ccccc-eeeeeccHHHHHHHHHHcCCcccccCCCCCccccccccccccccCCCCCC
Confidence 99996 79999999999999999999999999999999999999999999998654
No 2
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=100.00 E-value=1.9e-51 Score=305.94 Aligned_cols=96 Identities=49% Similarity=0.987 Sum_probs=60.8
Q ss_pred ceEEEecCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCCccCc-cCCceeecCCHHHHHHHHHHcCccEEEecC
Q 031660 52 RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYAN-VGDAGLSFDSKEAAREFAERHGWEYVVRKP 130 (155)
Q Consensus 52 r~vrIy~Pak~a~QSG~~~t~~W~LeFe~~~~w~nPLMGWtss~D~~sq-v~~~~L~F~SkE~AI~faek~Gw~Y~V~~p 130 (155)
|+||||+|+|+|||||++++++|+|||+..++|+|||||||||+||++| | +|+|+|+|+||+|||+|||+|+|++|
T Consensus 1 r~arIy~pak~amQSG~~~t~~W~lefe~~~~~~~PLMGWtss~D~~~q~v---~l~F~skE~Ai~yaer~G~~Y~V~~p 77 (101)
T PF04800_consen 1 RKARIYQPAKNAMQSGTANTKKWVLEFETRARWENPLMGWTSSGDPLSQSV---RLKFDSKEDAIAYAERNGWDYEVEEP 77 (101)
T ss_dssp -EEEEE--SS--STTTT-SS--EEEEEEESSS---TTT-SSSS--SEEE-C---EEEESSHHHHHHHHHHCT-EEEEE-S
T ss_pred CeEEEeCCCCCCCCCCCCCCCCEEEeecCcCCcCCCccCCCCCCChhhCee---EeeeCCHHHHHHHHHHcCCeEEEeCC
Confidence 6899999999999999999999999999889999999999999999998 7 99999999999999999999999999
Q ss_pred CCCccCcccccccCCCCCCC
Q 031660 131 HRPLLKVKSYADNFKWKGPP 150 (155)
Q Consensus 131 ~~~~~~~KsYadNF~~~g~p 150 (155)
+.+++++|+|||||+|+++.
T Consensus 78 ~~r~~~~ksY~dNF~~~r~~ 97 (101)
T PF04800_consen 78 KKRKRRPKSYADNFSWNRRT 97 (101)
T ss_dssp TT------------------
T ss_pred CCCcCCcccHHHhCCcCCCC
Confidence 99999999999999999863
No 3
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=81.52 E-value=2.2 Score=28.28 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=23.8
Q ss_pred eeecCCHHHHHHHHH----Hc-CccEEEecCCCCccCcccc
Q 031660 105 GLSFDSKEAAREFAE----RH-GWEYVVRKPHRPLLKVKSY 140 (155)
Q Consensus 105 ~L~F~SkE~AI~fae----k~-Gw~Y~V~~p~~~~~~~KsY 140 (155)
...|+|+++||++|+ ++ +-+..|....-+.....+|
T Consensus 22 ~~~~~Tk~eAi~~Ar~~a~~~~~~el~Ih~~dG~i~~~~sy 62 (62)
T PF09954_consen 22 SKTFDTKAEAIEAARELAKNQGGGELIIHGRDGKIREERSY 62 (62)
T ss_pred ccccCcHHHHHHHHHHHHHhCCCcEEEEECCCCeEEEeecC
Confidence 568999999998875 44 6677776654433333333
No 4
>PHA02552 4 head completion protein; Provisional
Probab=78.60 E-value=1.9 Score=34.47 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=42.5
Q ss_pred ceEEEecCCCCCC-CCCCCCCCCcEEEccCCCCCCCCCCCCCCCCCccCccCCceeecC-----------CHHHHHHHHH
Q 031660 52 RRVVIYTPARTAT-QQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFD-----------SKEAAREFAE 119 (155)
Q Consensus 52 r~vrIy~Pak~a~-QSG~~~t~~W~LeFe~~~~w~nPLMGWtss~D~~sqv~~~~L~F~-----------SkE~AI~fae 119 (155)
.++|.|-|.=-+. ..| ....+|.-+..+..+|.+- ..-|+.+ ...|. --++|.+||+
T Consensus 60 Gk~r~Y~PDFLV~~~dG----~~~lvEVKp~~~~~~p~~~--~~~~~~~-----~~~~~~~~~~w~~~~~K~~Aa~~~a~ 128 (151)
T PHA02552 60 GKRRRYFMDFYVKVDNG----QKFLIEVKPKKETQPPKKP--AKMTTAA-----KKRFINEVYTWSVNTDKWKAARALCE 128 (151)
T ss_pred CCeeeEcCcEEEEEeCC----CEEEEEEccHHHccCcccc--cccchhh-----hhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4577888873332 233 4788888887766666442 1111100 11222 2378999999
Q ss_pred HcCccEEEecCCC
Q 031660 120 RHGWEYVVRKPHR 132 (155)
Q Consensus 120 k~Gw~Y~V~~p~~ 132 (155)
++||.|.|.....
T Consensus 129 ~~Gw~F~iiTE~~ 141 (151)
T PHA02552 129 KKGWKFKIITEDE 141 (151)
T ss_pred HcCCEEEEEEHHH
Confidence 9999999976543
No 5
>PRK05370 argininosuccinate synthase; Validated
Probab=76.74 E-value=2.3 Score=39.43 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=19.2
Q ss_pred ecCCHHHHHHHHHHcCccEEE
Q 031660 107 SFDSKEAAREFAERHGWEYVV 127 (155)
Q Consensus 107 ~F~SkE~AI~faek~Gw~Y~V 127 (155)
.|+|+++.|+||++||++..+
T Consensus 165 ~f~sR~e~i~Ya~~hGIpv~~ 185 (447)
T PRK05370 165 ELGGRAEMSEFLIAHGFDYKM 185 (447)
T ss_pred ccCCHHHHHHHHHHcCCCCCc
Confidence 689999999999999999754
No 6
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=74.24 E-value=2 Score=29.52 Aligned_cols=16 Identities=31% Similarity=0.717 Sum_probs=11.0
Q ss_pred HHHHHHHHHcCccEEE
Q 031660 112 EAAREFAERHGWEYVV 127 (155)
Q Consensus 112 E~AI~faek~Gw~Y~V 127 (155)
++-+.|||++||-..+
T Consensus 30 ~eV~~YC~~~GWIip~ 45 (57)
T PF08727_consen 30 PEVREYCEEQGWIIPA 45 (57)
T ss_dssp HHHHHHHHHHT--TT-
T ss_pred HHHHHHHHHCCccccC
Confidence 5589999999996554
No 7
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=73.42 E-value=3 Score=32.35 Aligned_cols=50 Identities=28% Similarity=0.595 Sum_probs=28.6
Q ss_pred CCcEEEccCCCCCCCCCC-CCCCC--------CCccCccCCceeecCCHHHHHHHHHHcC
Q 031660 72 GRWKINFMSTQKWENPLM-GWTST--------GDPYANVGDAGLSFDSKEAAREFAERHG 122 (155)
Q Consensus 72 ~~W~LeFe~~~~w~nPLM-GWtss--------~D~~sqv~~~~L~F~SkE~AI~faek~G 122 (155)
..|+-+|.. ..|.+|-- -|... .|-..-++..-+-|.++++|.+|+++||
T Consensus 77 ~~~V~D~~~-~~~~~p~~~~~Ida~~A~yV~gs~~~~pMg~~~~aF~~~~~A~~F~~~~G 135 (149)
T PF05573_consen 77 AIYVTDYST-TDWDQPGDGEWIDAKKAYYVVGSDVRGPMGPDLIAFASKEDAEAFAKEHG 135 (149)
T ss_dssp EEEEEES-T-S-TT-S---EEEEGGGSEEEEESSSS-TTS--EEEES-HHHHHHHHHHTE
T ss_pred EEEEEeccc-ccccCCCCCceEEcceEEEEECCCcCCCCCCcccccCCHHHHHHHHHHcC
Confidence 568888887 55555542 34333 2222233444678999999999999997
No 8
>PF08722 Tn7_Tnp_TnsA_N: TnsA endonuclease N terminal; InterPro: IPR014833 The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5'-end of the transposon is carried out by TnsA, and breakage and joining at the 3'-end is carried out by TnsB. The N-terminal domain of TnsA is catalytic. ; PDB: 1F1Z_B 1T0F_B.
Probab=65.77 E-value=7.1 Score=27.20 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCccEEEec
Q 031660 111 KEAAREFAERHGWEYVVRK 129 (155)
Q Consensus 111 kE~AI~faek~Gw~Y~V~~ 129 (155)
.+.|-.||+++||+|.|..
T Consensus 69 ~~~~~~y~~~~g~~f~ivT 87 (88)
T PF08722_consen 69 LEIEREYWEEQGIPFRIVT 87 (88)
T ss_dssp HHHHHHHHHHCT--EEEE-
T ss_pred HHHHHHHHHHcCCeEEEEc
Confidence 3568899999999999863
No 9
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=60.65 E-value=6.7 Score=29.29 Aligned_cols=15 Identities=40% Similarity=0.866 Sum_probs=12.6
Q ss_pred HHHHHHcCccEEEec
Q 031660 115 REFAERHGWEYVVRK 129 (155)
Q Consensus 115 I~faek~Gw~Y~V~~ 129 (155)
++||+++||+|+|.+
T Consensus 73 ~~~a~~~gw~~~~l~ 87 (115)
T PF03462_consen 73 QRYAERRGWKVEVLD 87 (115)
T ss_dssp HHHHHHTT-EEEEEE
T ss_pred HHHHHHcCCEEEEEe
Confidence 489999999999976
No 10
>PRK04527 argininosuccinate synthase; Provisional
Probab=59.36 E-value=8.2 Score=35.22 Aligned_cols=20 Identities=10% Similarity=0.302 Sum_probs=17.6
Q ss_pred ecCCHHHHHHHHHHcCccEE
Q 031660 107 SFDSKEAAREFAERHGWEYV 126 (155)
Q Consensus 107 ~F~SkE~AI~faek~Gw~Y~ 126 (155)
+++++++.|+||++||++..
T Consensus 150 k~~~R~~~i~ya~~~gipv~ 169 (400)
T PRK04527 150 HTQTRAYEQKYLEERGFGVR 169 (400)
T ss_pred ccccHHHHHHHHHHcCCCCC
Confidence 45799999999999999874
No 11
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=56.71 E-value=14 Score=26.75 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=19.5
Q ss_pred ecCCHHHHHHHHHHcCccEEEecCC
Q 031660 107 SFDSKEAAREFAERHGWEYVVRKPH 131 (155)
Q Consensus 107 ~F~SkE~AI~faek~Gw~Y~V~~p~ 131 (155)
.-=..++-+.||+++|+.|.|..+.
T Consensus 53 e~id~~~i~~fC~~~gy~~~iv~~g 77 (86)
T PF11360_consen 53 EEIDPEEIEEFCRSAGYEYEIVPPG 77 (86)
T ss_pred EEECHHHHHHHHHHCCceEEEECCC
Confidence 3345666677899999999998876
No 12
>PF06194 Phage_Orf51: Phage Conserved Open Reading Frame 51; InterPro: IPR009338 This entry is represented by the Staphylococcus phage PVL (bacteriophage phi-PVL), Orf51. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=46.67 E-value=18 Score=26.39 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=21.4
Q ss_pred eeecCCHHHHHHHHHHcCccEEE
Q 031660 105 GLSFDSKEAAREFAERHGWEYVV 127 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw~Y~V 127 (155)
...|+|+++=..|-+.+++.|+=
T Consensus 51 KktFn~~~Ef~~Yi~~~~L~~ee 73 (80)
T PF06194_consen 51 KKTFNNKEEFENYIKQHELYFEE 73 (80)
T ss_pred hhhcCcHHHHHHHHHHcCCceeh
Confidence 88999999999999999999874
No 13
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=46.00 E-value=13 Score=27.97 Aligned_cols=20 Identities=25% Similarity=0.611 Sum_probs=15.3
Q ss_pred eecCCHHHHHHHHHHcCccEE
Q 031660 106 LSFDSKEAAREFAERHGWEYV 126 (155)
Q Consensus 106 L~F~SkE~AI~faek~Gw~Y~ 126 (155)
|-|+ .+++++||+++||.++
T Consensus 107 Lg~~-~~el~~~~~~~gW~~d 126 (143)
T PF10075_consen 107 LGLS-EEELEKFIKSRGWTVD 126 (143)
T ss_dssp TTS--HHHHHHHHHHHT-EE-
T ss_pred hCCC-HHHHHHHHHHcCCEEC
Confidence 5566 8999999999999987
No 14
>PF13031 DUF3892: Protein of unknown function (DUF3892)
Probab=45.34 E-value=20 Score=25.11 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.5
Q ss_pred ecCCHHHHHHHHHHcCccEEEe
Q 031660 107 SFDSKEAAREFAERHGWEYVVR 128 (155)
Q Consensus 107 ~F~SkE~AI~faek~Gw~Y~V~ 128 (155)
-.-|+++||+++|+..|.|.|.
T Consensus 29 ~~~s~~~~i~~ie~g~~~~yv~ 50 (85)
T PF13031_consen 29 WKYSREEAIAWIENGKWSFYVE 50 (85)
T ss_pred ccccHHHHHHHHHcCCceEEeC
Confidence 4458999999999998999998
No 15
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=45.32 E-value=15 Score=33.41 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHcCccEEEecCCC
Q 031660 110 SKEAAREFAERHGWEYVVRKPHR 132 (155)
Q Consensus 110 SkE~AI~faek~Gw~Y~V~~p~~ 132 (155)
+-+-=|+||++||+++++..-..
T Consensus 127 ~ikNridYA~rHgy~~~~~~~~~ 149 (364)
T KOG4748|consen 127 SIKNRIDYARRHGYEFEYKNATL 149 (364)
T ss_pred HHHhHHHHHHHhCCeEEEEeccc
Confidence 67778999999999999876543
No 16
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=45.19 E-value=18 Score=24.06 Aligned_cols=14 Identities=36% Similarity=0.432 Sum_probs=12.7
Q ss_pred eeecCCHHHHHHHH
Q 031660 105 GLSFDSKEAAREFA 118 (155)
Q Consensus 105 ~L~F~SkE~AI~fa 118 (155)
-+.|+|.++|++|-
T Consensus 43 iieFPs~~aa~~~~ 56 (65)
T PF07045_consen 43 IIEFPSMEAAKAWY 56 (65)
T ss_dssp EEEESSHHHHHHHH
T ss_pred EEECCCHHHHHHHH
Confidence 89999999999983
No 17
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=44.35 E-value=18 Score=26.24 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=14.6
Q ss_pred eeecCCHHHHHHHHHH
Q 031660 105 GLSFDSKEAAREFAER 120 (155)
Q Consensus 105 ~L~F~SkE~AI~faek 120 (155)
.|-|.+.+||.+||.-
T Consensus 26 Vl~FE~edDA~RYa~l 41 (86)
T PF11360_consen 26 VLMFEDEDDAERYAGL 41 (86)
T ss_pred EEEEccHHHHHHHHHH
Confidence 8999999999999954
No 18
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=44.18 E-value=29 Score=25.87 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=23.4
Q ss_pred eeecCCHHHHHHHHHHcCccEEEecCCCC
Q 031660 105 GLSFDSKEAAREFAERHGWEYVVRKPHRP 133 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw~Y~V~~p~~~ 133 (155)
.+...+.++-++||+++++++.|.-|..+
T Consensus 45 ~~~~~d~~~l~~~a~~~~idlvvvGPE~p 73 (100)
T PF02844_consen 45 PIDITDPEELADFAKENKIDLVVVGPEAP 73 (100)
T ss_dssp -S-TT-HHHHHHHHHHTTESEEEESSHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEECChHH
Confidence 34678899999999999999999988764
No 19
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=42.93 E-value=18 Score=32.62 Aligned_cols=22 Identities=36% Similarity=0.770 Sum_probs=20.0
Q ss_pred eeecCCHHHHHHHHHHcCccEE
Q 031660 105 GLSFDSKEAAREFAERHGWEYV 126 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw~Y~ 126 (155)
-+-|.+.+||.+||+-+||+-.
T Consensus 216 DiifgNe~EA~af~~~~~~~t~ 237 (343)
T KOG2854|consen 216 DIIFGNEDEAAAFARAHGWETK 237 (343)
T ss_pred eEEEcCHHHHHHHHHhhCCccc
Confidence 6789999999999999999865
No 20
>PF12518 DUF3721: Protein of unknown function; InterPro: IPR022196 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length. There is a conserved WMPC sequence motif. There are two completely conserved residues (A and C) that may be functionally important.
Probab=42.37 E-value=25 Score=21.81 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=14.2
Q ss_pred cCCHHHHHHHHHHcCc
Q 031660 108 FDSKEAAREFAERHGW 123 (155)
Q Consensus 108 F~SkE~AI~faek~Gw 123 (155)
|+|+++|.+=|.+.|-
T Consensus 1 y~tk~eAe~~A~~~GC 16 (34)
T PF12518_consen 1 YPTKAEAEKRAKELGC 16 (34)
T ss_pred CCcHHHHHHHHHHcCC
Confidence 8999999999998774
No 21
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=40.51 E-value=26 Score=28.87 Aligned_cols=26 Identities=38% Similarity=0.523 Sum_probs=21.5
Q ss_pred eeecCCHHHHHHHHHHcCccEEEecC
Q 031660 105 GLSFDSKEAAREFAERHGWEYVVRKP 130 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw~Y~V~~p 130 (155)
--.|.+.++|++|.++++.++.|..+
T Consensus 20 ~~~f~~~~~A~~~l~~~~~p~~ViKa 45 (194)
T PF01071_consen 20 YKVFTDYEEALEYLEEQGYPYVVIKA 45 (194)
T ss_dssp EEEESSHHHHHHHHHHHSSSEEEEEE
T ss_pred eeEECCHHHHHHHHHhcCCCceEEcc
Confidence 34799999999999999999944443
No 22
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=38.11 E-value=28 Score=29.42 Aligned_cols=18 Identities=39% Similarity=0.501 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHcCccEE
Q 031660 109 DSKEAAREFAERHGWEYV 126 (155)
Q Consensus 109 ~SkE~AI~faek~Gw~Y~ 126 (155)
-++++|++||++||+++.
T Consensus 191 ~~~~~~~~fA~~~~l~~i 208 (219)
T PRK05773 191 LSKEKAKKIAKNLGFPLV 208 (219)
T ss_pred cCHHHHHHHHHHcCCcEE
Confidence 379999999999999983
No 23
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=37.09 E-value=17 Score=22.88 Aligned_cols=21 Identities=14% Similarity=0.374 Sum_probs=18.0
Q ss_pred cCCHHHHHHHHHHcCccEEEe
Q 031660 108 FDSKEAAREFAERHGWEYVVR 128 (155)
Q Consensus 108 F~SkE~AI~faek~Gw~Y~V~ 128 (155)
..+.|+-|++|+.+|+.|...
T Consensus 26 ~~~~~e~~~lA~~~Gy~ft~~ 46 (49)
T PF07862_consen 26 CQNPEEVVALAREAGYDFTEE 46 (49)
T ss_pred cCCHHHHHHHHHHcCCCCCHH
Confidence 459999999999999998643
No 24
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=36.49 E-value=30 Score=29.18 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHcCccEEE
Q 031660 109 DSKEAAREFAERHGWEYVV 127 (155)
Q Consensus 109 ~SkE~AI~faek~Gw~Y~V 127 (155)
..++++++||++||+++.-
T Consensus 172 ar~~~~~~fa~~h~l~~it 190 (203)
T COG0108 172 ARLPELEEFAKEHGLPVIT 190 (203)
T ss_pred cChHHHHHHHHHcCCcEEE
Confidence 4679999999999999864
No 25
>PF01693 Cauli_VI: Caulimovirus viroplasmin; InterPro: IPR011320 This entry represents the N-terminal domain of RNase HI, which has a 3-layer alpha/beta/alpha structure []. This domain is lacking in retroviral and prokaryotic enzymes, but shows a striking structural similarity to the ribosomal protein L9 N-terminal domain, and may function as a regulatory RNA-binding module. However, the topology of this domain differs from structures of known RNA binding domains such as the double-stranded RNA binding domain (dsRBD), the hnRNP K homology (KH) domain and the RNP motif. Eukaryotic RNases HI possess either one or two copies of this small N-terminal domain, in addition to the well-conserved catalytic RNase H domain. RNase HI belongs to the family of ribonuclease H enzymes that recognise RNA:DNA hybrids and degrade the RNA component. ; PDB: 1QHK_A 3BSU_C.
Probab=36.35 E-value=27 Score=21.75 Aligned_cols=13 Identities=46% Similarity=0.636 Sum_probs=11.6
Q ss_pred eeecCCHHHHHHH
Q 031660 105 GLSFDSKEAAREF 117 (155)
Q Consensus 105 ~L~F~SkE~AI~f 117 (155)
..+|+|.|+|.+|
T Consensus 32 ~k~F~t~~eA~~~ 44 (44)
T PF01693_consen 32 YKSFKTREEAEEF 44 (44)
T ss_dssp EEEESSHHHHHHH
T ss_pred ECCcCCHHHHhhC
Confidence 6789999999986
No 26
>PF08803 ydhR: Putative mono-oxygenase ydhR; InterPro: IPR014910 YdhR is a homodimeric protein that comprises of a central four-stranded beta sheet and four surrounding alpha helices []. It shows structural homology to the ActVA-Orf6 and YgiN proteins which indicates it could be a mono-oxygenase. ; PDB: 1WD6_B 2HIQ_B 2ASY_B.
Probab=35.94 E-value=16 Score=27.42 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=22.4
Q ss_pred CCCCCCccCccCCceeecCCHHHHHHHHHHc
Q 031660 91 WTSTGDPYANVGDAGLSFDSKEAAREFAERH 121 (155)
Q Consensus 91 Wtss~D~~sqv~~~~L~F~SkE~AI~faek~ 121 (155)
||.+.++.. .+| -.-|+|+++|.+|+++|
T Consensus 38 Wten~~t~e-aGG-iYLFe~e~~A~aY~~~h 66 (97)
T PF08803_consen 38 WTENEETGE-AGG-IYLFEDEASAEAYLEMH 66 (97)
T ss_dssp EEEETTTTE-EEE-EEEESSHHHHHHHHHHH
T ss_pred EEecCCCCc-cce-EEEECCHHHHHHHHHHH
Confidence 777766643 233 56799999999999987
No 27
>PF03682 UPF0158: Uncharacterised protein family (UPF0158); InterPro: IPR005361 This is a small family of hypothetical bacterial proteins of unknown function.
Probab=33.86 E-value=31 Score=27.49 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCccEEEecC
Q 031660 111 KEAAREFAERHGWEYVVRKP 130 (155)
Q Consensus 111 kE~AI~faek~Gw~Y~V~~p 130 (155)
++.|+.+|+.|||.|...++
T Consensus 127 r~~a~eWleen~I~~~~~~~ 146 (163)
T PF03682_consen 127 RERAIEWLEENGIEPVFEED 146 (163)
T ss_pred HHHHHHHHHHcCCCcccccc
Confidence 67899999999999998775
No 28
>PLN00139 hypothetical protein; Provisional
Probab=33.18 E-value=38 Score=29.64 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=21.7
Q ss_pred eecCCHHHHHHHHHHcCccEEEecCC
Q 031660 106 LSFDSKEAAREFAERHGWEYVVRKPH 131 (155)
Q Consensus 106 L~F~SkE~AI~faek~Gw~Y~V~~p~ 131 (155)
..-++++++.+||.++|++|+-.+..
T Consensus 195 F~t~d~~eve~~~~~~g~~~eW~~dg 220 (320)
T PLN00139 195 FGTSDKAEAERRAKALGMDMEWLPNG 220 (320)
T ss_pred hCCCCHHHHHHHHHHcCCeEEEcCCC
Confidence 44578999999999999999986544
No 29
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=32.99 E-value=50 Score=21.09 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHcCccEEEecC
Q 031660 109 DSKEAAREFAERHGWEYVVRKP 130 (155)
Q Consensus 109 ~SkE~AI~faek~Gw~Y~V~~p 130 (155)
-|.++|.+..+.+||.+.+...
T Consensus 9 ~~~~~a~~~l~~~g~~~~~~~~ 30 (63)
T PF03793_consen 9 MTYDEAKSILEAAGLTVNVVEE 30 (63)
T ss_dssp SBHHHHHHHHHHTT-EEEEEEE
T ss_pred CcHHHHHHHHHHCCCEEEEEEE
Confidence 4789999999999998887653
No 30
>PRK00823 phhB pterin-4-alpha-carbinolamine dehydratase; Validated
Probab=32.84 E-value=41 Score=24.25 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=24.8
Q ss_pred CCCCCCCCCCCccCccCCceeecCCHHHHHHHHHHcC
Q 031660 86 NPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHG 122 (155)
Q Consensus 86 nPLMGWtss~D~~sqv~~~~L~F~SkE~AI~faek~G 122 (155)
..|-||.-..|+.. +. ...+|++-.+|++|+.+-+
T Consensus 16 ~~l~gW~~~~~~~~-l~-r~f~f~~f~~a~~f~~~Va 50 (97)
T PRK00823 16 PQLPGWTLVGDRDA-IE-RTFKFKNFNEAFAFMNRVA 50 (97)
T ss_pred hcCCCCeEeCCcCe-EE-EEEEeCCHHHHHHHHHHHH
Confidence 45679988877431 21 2788999999999877643
No 31
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=31.63 E-value=49 Score=28.70 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=20.8
Q ss_pred eeecCCHHHHHHHHHHcCccEEEec
Q 031660 105 GLSFDSKEAAREFAERHGWEYVVRK 129 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw~Y~V~~ 129 (155)
.+.+++...=|+||.++||+|.+..
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD 52 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVD 52 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEB
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEec
Confidence 3578888899999999999999884
No 32
>cd00913 PCD_DCoH_subfamily_a PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein).
Probab=31.55 E-value=62 Score=22.22 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=21.1
Q ss_pred CCCCCCCccCccCCceeecCCHHHHHHHHHH
Q 031660 90 GWTSTGDPYANVGDAGLSFDSKEAAREFAER 120 (155)
Q Consensus 90 GWtss~D~~sqv~~~~L~F~SkE~AI~faek 120 (155)
||.-..|+.. +. .+..|++-.+|++|+.+
T Consensus 1 gW~~~~~~~~-l~-r~f~f~~f~~a~~f~~~ 29 (76)
T cd00913 1 GWELADDGLK-LE-RTFRFKNFVEALEFVNA 29 (76)
T ss_pred CCcCcCCCCe-EE-EEEEcCCHHHHHHHHHH
Confidence 7887776522 11 27889999999999776
No 33
>PRK13864 type IV secretion system lytic transglycosylase VirB1; Provisional
Probab=30.76 E-value=71 Score=27.53 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=19.4
Q ss_pred eeecCCHHHHHHHHHH---cCccEEEec
Q 031660 105 GLSFDSKEAAREFAER---HGWEYVVRK 129 (155)
Q Consensus 105 ~L~F~SkE~AI~faek---~Gw~Y~V~~ 129 (155)
.|.|.++++||+.+++ .|..|.|--
T Consensus 69 ~l~~qs~~EAi~~a~~l~~~g~s~DvGL 96 (245)
T PRK13864 69 TLHWQNHAQATQSVRHRLEARHSLDVGL 96 (245)
T ss_pred ccCCCCHHHHHHHHHHHHhcCCceeeec
Confidence 5789999999998864 677777643
No 34
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]. The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=30.48 E-value=84 Score=20.60 Aligned_cols=33 Identities=36% Similarity=0.672 Sum_probs=25.1
Q ss_pred eeecCCHHHH----HHHHHHcCccEEEecCCCCccCc
Q 031660 105 GLSFDSKEAA----REFAERHGWEYVVRKPHRPLLKV 137 (155)
Q Consensus 105 ~L~F~SkE~A----I~faek~Gw~Y~V~~p~~~~~~~ 137 (155)
.+.|+|+++. ..||-+++.+|.|..-...+.+.
T Consensus 7 G~~F~~~~e~k~av~~yai~~~~~~~v~ksd~~r~~~ 43 (67)
T PF03108_consen 7 GQTFPSKEEFKEAVREYAIKNGFEFKVKKSDKKRYRA 43 (67)
T ss_pred CCEECCHHHHHHHHHHHHHhcCcEEEEeccCCEEEEE
Confidence 6799999876 46999999999997765444333
No 35
>PRK08179 prfH peptide chain release factor-like protein; Reviewed
Probab=30.47 E-value=39 Score=28.16 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.0
Q ss_pred HHHHHHcCccEEEecCCC
Q 031660 115 REFAERHGWEYVVRKPHR 132 (155)
Q Consensus 115 I~faek~Gw~Y~V~~p~~ 132 (155)
+.||+++||+++|.+-..
T Consensus 27 ~~~a~~~g~~~~ii~~~~ 44 (200)
T PRK08179 27 LKEAARQGVRVTVLETET 44 (200)
T ss_pred HHHHHHcCCeEEEEeCCC
Confidence 579999999999977543
No 36
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=29.38 E-value=40 Score=31.15 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.8
Q ss_pred ecCCHHHHHHHHHHcCccEEEe
Q 031660 107 SFDSKEAAREFAERHGWEYVVR 128 (155)
Q Consensus 107 ~F~SkE~AI~faek~Gw~Y~V~ 128 (155)
.|. +|+-|+||+++|+++.+.
T Consensus 151 ~~~-R~~~i~Ya~~~gipv~~~ 171 (403)
T COG0137 151 NLT-REEEIEYAEEHGIPVKAT 171 (403)
T ss_pred ccC-hHHHHHHHHHcCCCcccc
Confidence 455 999999999999999886
No 37
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=28.93 E-value=44 Score=30.47 Aligned_cols=19 Identities=21% Similarity=0.573 Sum_probs=16.2
Q ss_pred HHHHHHcCccEEEecCCCC
Q 031660 115 REFAERHGWEYVVRKPHRP 133 (155)
Q Consensus 115 I~faek~Gw~Y~V~~p~~~ 133 (155)
..||+.+||.++|..-.+.
T Consensus 139 ~rYAe~kgWk~ei~s~se~ 157 (363)
T COG0216 139 SRYAESKGWKVEILSASES 157 (363)
T ss_pred HHHHHhCCCEEEEeecCcc
Confidence 3799999999999887664
No 38
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=28.45 E-value=36 Score=28.34 Aligned_cols=18 Identities=28% Similarity=0.682 Sum_probs=12.2
Q ss_pred HHHHHHHHHcCccEEEec
Q 031660 112 EAAREFAERHGWEYVVRK 129 (155)
Q Consensus 112 E~AI~faek~Gw~Y~V~~ 129 (155)
+-=+.||++||++|.+..
T Consensus 31 ~Nr~~Ya~~HgY~~~~~~ 48 (239)
T PF05637_consen 31 QNRVDYARRHGYDLYYRN 48 (239)
T ss_dssp --HHHHHHHHT-EEEEE-
T ss_pred HHHHHHHHhcCCEEEEEC
Confidence 334689999999999843
No 39
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=28.31 E-value=62 Score=21.68 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCccEEEe
Q 031660 111 KEAAREFAERHGWEYVVR 128 (155)
Q Consensus 111 kE~AI~faek~Gw~Y~V~ 128 (155)
.++|++|.+++|+..||.
T Consensus 59 ~~~a~~~L~~~~v~vEvl 76 (76)
T PF09383_consen 59 IEKAIAYLREQGVEVEVL 76 (76)
T ss_dssp HHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEC
Confidence 478999999999999873
No 40
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=27.81 E-value=1.1e+02 Score=26.04 Aligned_cols=41 Identities=22% Similarity=0.520 Sum_probs=28.4
Q ss_pred CCCCC---CCCCCCCCCccCccCCceeecCCHHHHHHHHHHcCccEEEecC
Q 031660 83 KWENP---LMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKP 130 (155)
Q Consensus 83 ~w~nP---LMGWtss~D~~sqv~~~~L~F~SkE~AI~faek~Gw~Y~V~~p 130 (155)
-|.|| .-||.-+. . +....|. .+++.+|++++|+++.|..-
T Consensus 176 lWsDP~~~~~~~~~~~--R----g~g~~fg-~~~~~~Fl~~n~l~~iiR~H 219 (271)
T smart00156 176 LWSDPDQPVDGFQPSI--R----GASYYFG-PDAVDEFLKKNNLKLIIRAH 219 (271)
T ss_pred eecCCCcccCCCccCC--C----CCccccC-HHHHHHHHHHCCCeEEEecC
Confidence 57777 35665442 1 1245675 78888999999999999653
No 41
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=27.80 E-value=54 Score=24.67 Aligned_cols=20 Identities=45% Similarity=0.486 Sum_probs=16.2
Q ss_pred CCccCccCCceeecCCHHHHHHH
Q 031660 95 GDPYANVGDAGLSFDSKEAAREF 117 (155)
Q Consensus 95 ~D~~sqv~~~~L~F~SkE~AI~f 117 (155)
.||-.+| .+.|+|+|.|.++
T Consensus 50 w~ptr~v---viEFps~~~ar~~ 69 (96)
T COG5470 50 WRPTRNV---VIEFPSLEAARDC 69 (96)
T ss_pred CCcccEE---EEEcCCHHHHHHH
Confidence 4666666 8999999999876
No 42
>cd00914 PCD_DCoH_subfamily_b PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon
Probab=27.66 E-value=58 Score=22.42 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=21.0
Q ss_pred CCCCCCCccCccCCceeecCCHHHHHHHHHH
Q 031660 90 GWTSTGDPYANVGDAGLSFDSKEAAREFAER 120 (155)
Q Consensus 90 GWtss~D~~sqv~~~~L~F~SkE~AI~faek 120 (155)
||.-..|+.. +. .+.+|++-.+|++|..+
T Consensus 1 gW~~~~~~~~-l~-r~f~f~~f~~a~~f~~~ 29 (76)
T cd00914 1 GWTLVDGRDA-IH-KSFKFKDFNEAFGFMTR 29 (76)
T ss_pred CCeEeCCCCe-EE-EEEEeCCHHHHHHHHHH
Confidence 6877766531 11 37899999999999766
No 43
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=27.30 E-value=63 Score=24.90 Aligned_cols=23 Identities=43% Similarity=0.671 Sum_probs=17.8
Q ss_pred CccC-ccCCceeecCCHHHHHHHHHH
Q 031660 96 DPYA-NVGDAGLSFDSKEAAREFAER 120 (155)
Q Consensus 96 D~~s-qv~~~~L~F~SkE~AI~faek 120 (155)
|+.+ +| --|.|.|+|||-.|+++
T Consensus 79 D~R~~tV--yGLnF~Sk~ea~~F~~~ 102 (111)
T cd01206 79 DSRANTV--YGLGFSSEQQLTKFAEK 102 (111)
T ss_pred cccccee--eecccCCHHHHHHHHHH
Confidence 5542 45 36999999999999976
No 44
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=27.26 E-value=61 Score=31.98 Aligned_cols=76 Identities=30% Similarity=0.437 Sum_probs=50.2
Q ss_pred CCcEEEccCC--CCCCCCCCCCCCCCCccCccCCceeecCCHHHHHHHHHHcCccEEEecCCCCccCcccccccCCCCCC
Q 031660 72 GRWKINFMST--QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKWKGP 149 (155)
Q Consensus 72 ~~W~LeFe~~--~~w~nPLMGWtss~D~~sqv~~~~L~F~SkE~AI~faek~Gw~Y~V~~p~~~~~~~KsYadNF~~~g~ 149 (155)
-.|+|--.|. .-..-|=-|=|+++|+- .|.+..+.-.+-|+-+.||++|.+.+.|.-|..+. ...-+|+|..-|.
T Consensus 17 l~wkL~qSp~v~~v~vaPGn~G~a~~~~~-~~~~~dI~~~d~~ala~f~~e~~I~lVvvGPE~PL--~~Gl~~~l~~~gi 93 (788)
T KOG0237|consen 17 LAWKLKQSPKVKKVYVAPGNGGTASGDAS-KVPNLDISVADFEALASFCKEHNINLVVVGPELPL--VAGLADVLRSAGI 93 (788)
T ss_pred HHHHhhcCCccceEEEccCCCCcccCccc-cCcccccChhhHHHHHHHHHHcceeEEEECCchhh--hhhhhhhhhccCc
Confidence 3577766654 23445666667777763 23334667778999999999999999999988653 2334455554444
Q ss_pred C
Q 031660 150 P 150 (155)
Q Consensus 150 p 150 (155)
|
T Consensus 94 ~ 94 (788)
T KOG0237|consen 94 P 94 (788)
T ss_pred c
Confidence 3
No 45
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=27.24 E-value=52 Score=24.12 Aligned_cols=16 Identities=44% Similarity=0.870 Sum_probs=14.9
Q ss_pred eeecCCHHHHHHHHHH
Q 031660 105 GLSFDSKEAAREFAER 120 (155)
Q Consensus 105 ~L~F~SkE~AI~faek 120 (155)
-|.|.|.+||-+|.++
T Consensus 86 GLnF~se~EA~~F~~~ 101 (106)
T smart00461 86 GLNFASEEEAKKFRKK 101 (106)
T ss_pred EeecCCHHHHHHHHHH
Confidence 7999999999999876
No 46
>PRK11118 putative monooxygenase; Provisional
Probab=27.18 E-value=66 Score=24.38 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=22.3
Q ss_pred CCCCCCccCccCCceeecCCHHHHHHHHHHc
Q 031660 91 WTSTGDPYANVGDAGLSFDSKEAAREFAERH 121 (155)
Q Consensus 91 Wtss~D~~sqv~~~~L~F~SkE~AI~faek~ 121 (155)
||.+.++.. .+ --.-|++.++|-+|.++|
T Consensus 41 WTen~~t~e-aG-GiYlF~~e~~a~aYl~mH 69 (100)
T PRK11118 41 WTENEKTQE-AG-GIYLFEDEASAEAYLEMH 69 (100)
T ss_pred eecCCCCcc-cc-eEEEECCHHHHHHHHHHH
Confidence 777777643 23 367799999999999876
No 47
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=26.92 E-value=54 Score=23.97 Aligned_cols=16 Identities=44% Similarity=0.785 Sum_probs=14.9
Q ss_pred eeecCCHHHHHHHHHH
Q 031660 105 GLSFDSKEAAREFAER 120 (155)
Q Consensus 105 ~L~F~SkE~AI~faek 120 (155)
-|.|.|.+||-.|+++
T Consensus 91 GLnF~se~eA~~F~~~ 106 (111)
T PF00568_consen 91 GLNFASEEEADQFYKK 106 (111)
T ss_dssp EEEESSHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHH
Confidence 8999999999999875
No 48
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=26.78 E-value=72 Score=19.63 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=16.0
Q ss_pred eeecCCHHHHHHHHH-HcCc
Q 031660 105 GLSFDSKEAAREFAE-RHGW 123 (155)
Q Consensus 105 ~L~F~SkE~AI~fae-k~Gw 123 (155)
-+.|.+.|+|....+ -+|.
T Consensus 43 ~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 43 FVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp EEEESSHHHHHHHHHHHTTE
T ss_pred EEEEcCHHHHHHHHHHcCCC
Confidence 789999999999888 6663
No 49
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=26.45 E-value=58 Score=20.63 Aligned_cols=19 Identities=32% Similarity=0.270 Sum_probs=16.9
Q ss_pred ceeecCCHHHHHHHHHHcC
Q 031660 104 AGLSFDSKEAAREFAERHG 122 (155)
Q Consensus 104 ~~L~F~SkE~AI~faek~G 122 (155)
+-+.|.|.|+|...++.++
T Consensus 42 a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 42 AFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp EEEEESSHHHHHHHHHHHT
T ss_pred EEEEeCCHHHHHHHHHHCC
Confidence 3789999999999999876
No 50
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=26.29 E-value=72 Score=23.58 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.4
Q ss_pred ceeecCCHHHHHHHHHHcCccEEEecC
Q 031660 104 AGLSFDSKEAAREFAERHGWEYVVRKP 130 (155)
Q Consensus 104 ~~L~F~SkE~AI~faek~Gw~Y~V~~p 130 (155)
..+..++.+++.+|++++|+.|.+...
T Consensus 68 i~Is~d~~~~~~~~~~~~~~~~~~l~D 94 (154)
T PRK09437 68 LGISTDKPEKLSRFAEKELLNFTLLSD 94 (154)
T ss_pred EEEcCCCHHHHHHHHHHhCCCCeEEEC
Confidence 367889999999999999999998763
No 51
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=25.97 E-value=59 Score=27.01 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=16.7
Q ss_pred cCCHHHHHHHHHHcCccEE
Q 031660 108 FDSKEAAREFAERHGWEYV 126 (155)
Q Consensus 108 F~SkE~AI~faek~Gw~Y~ 126 (155)
-.+++++.+||++||+++.
T Consensus 172 m~~~~~~~~fA~~~~l~~i 190 (199)
T TIGR00506 172 MARKPELMEYAKKHNLKLI 190 (199)
T ss_pred ccCHHHHHHHHHHcCCcEE
Confidence 4678999999999999984
No 52
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=25.95 E-value=1.1e+02 Score=25.28 Aligned_cols=37 Identities=30% Similarity=0.394 Sum_probs=28.9
Q ss_pred eeecCCHHHHHHHHHHcCccEEEecCCCC--ccCccccc
Q 031660 105 GLSFDSKEAAREFAERHGWEYVVRKPHRP--LLKVKSYA 141 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw~Y~V~~p~~~--~~~~KsYa 141 (155)
.|---+.++|+..|+..|++.++..|+.. .-+.-.||
T Consensus 30 qlGiv~~~eAL~lA~e~~LDLV~Ispna~PPVcKImDYG 68 (176)
T COG0290 30 QLGIVSIEEALKLAEEAGLDLVEISPNAKPPVCKIMDYG 68 (176)
T ss_pred EEcceeHHHHHHHHHHcCCCEEEECCCCCCCeeEeeecc
Confidence 34456899999999999999999998753 33555666
No 53
>TIGR03072 release_prfH putative peptide chain release factor H. Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon.
Probab=25.73 E-value=52 Score=27.38 Aligned_cols=17 Identities=18% Similarity=0.055 Sum_probs=14.6
Q ss_pred HHHHHHcCccEEEecCC
Q 031660 115 REFAERHGWEYVVRKPH 131 (155)
Q Consensus 115 I~faek~Gw~Y~V~~p~ 131 (155)
..||+++||+++|.+-.
T Consensus 26 ~~~a~~~g~~~eii~~~ 42 (200)
T TIGR03072 26 TREAAARGVRVEVLEQE 42 (200)
T ss_pred HHHHHHcCCeEEEEeCC
Confidence 57999999999997754
No 54
>PLN00200 argininosuccinate synthase; Provisional
Probab=25.55 E-value=49 Score=30.22 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=17.1
Q ss_pred ecCCHHHHHHHHHHcCccEE
Q 031660 107 SFDSKEAAREFAERHGWEYV 126 (155)
Q Consensus 107 ~F~SkE~AI~faek~Gw~Y~ 126 (155)
.|.||++.++||+++|++..
T Consensus 152 ~~~~r~e~~~~A~~~Gipv~ 171 (404)
T PLN00200 152 DIKGREDLIEYAKKHNIPVP 171 (404)
T ss_pred CCCCHHHHHHHHHHcCCCCC
Confidence 45699999999999999753
No 55
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=25.50 E-value=61 Score=27.34 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=16.9
Q ss_pred cCCHHHHHHHHHHcCccEE
Q 031660 108 FDSKEAAREFAERHGWEYV 126 (155)
Q Consensus 108 F~SkE~AI~faek~Gw~Y~ 126 (155)
...++++++||++||+++.
T Consensus 182 ma~~~~~~~fA~~~~l~~i 200 (214)
T PRK01792 182 MARTPEIVEFAKKFGYAVV 200 (214)
T ss_pred ccCHHHHHHHHHHcCCcEE
Confidence 4678999999999999984
No 56
>COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein [General function prediction only]
Probab=25.49 E-value=40 Score=28.87 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=13.0
Q ss_pred ecCCHHHHHHHHHH
Q 031660 107 SFDSKEAAREFAER 120 (155)
Q Consensus 107 ~F~SkE~AI~faek 120 (155)
.|+|.|+|.+||+-
T Consensus 39 sf~s~EeA~a~~~g 52 (225)
T COG3341 39 SFKSYEEAEAYCEG 52 (225)
T ss_pred ccccHHHHHHHhcc
Confidence 59999999999995
No 57
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=24.98 E-value=62 Score=23.53 Aligned_cols=16 Identities=44% Similarity=0.812 Sum_probs=14.8
Q ss_pred eeecCCHHHHHHHHHH
Q 031660 105 GLSFDSKEAAREFAER 120 (155)
Q Consensus 105 ~L~F~SkE~AI~faek 120 (155)
-|.|.|.|||-.|.++
T Consensus 84 GL~F~se~eA~~F~~~ 99 (104)
T cd00837 84 GLNFASEEEAAQFRKK 99 (104)
T ss_pred EEeeCCHHHHHHHHHH
Confidence 7999999999999875
No 58
>PRK13820 argininosuccinate synthase; Provisional
Probab=24.66 E-value=66 Score=29.24 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHcCccEEE
Q 031660 110 SKEAAREFAERHGWEYVV 127 (155)
Q Consensus 110 SkE~AI~faek~Gw~Y~V 127 (155)
||++-++||+++|++|..
T Consensus 148 tK~ei~~ya~~~gip~~~ 165 (394)
T PRK13820 148 TREWEIEYAKEKGIPVPV 165 (394)
T ss_pred CHHHHHHHHHHcCCCCCc
Confidence 999999999999998853
No 59
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.44 E-value=56 Score=26.97 Aligned_cols=44 Identities=25% Similarity=0.337 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCCccCccCCcee-----------ecCCHHHHHHHHHHcCccEEEe
Q 031660 85 ENPLMGWTSTGDPYANVGDAGL-----------SFDSKEAAREFAERHGWEYVVR 128 (155)
Q Consensus 85 ~nPLMGWtss~D~~sqv~~~~L-----------~F~SkE~AI~faek~Gw~Y~V~ 128 (155)
.|.|..|-..+--+.|-+...+ +=-+-|+|.+|||+||+-|.--
T Consensus 99 ynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~ 153 (215)
T KOG0097|consen 99 YNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEA 153 (215)
T ss_pred hhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEe
Confidence 3777777665544433210011 1135799999999999988643
No 60
>PF01329 Pterin_4a: Pterin 4 alpha carbinolamine dehydratase; InterPro: IPR001533 DCoH is the dimerisation cofactor of hepatocyte nuclear factor 1 (HNF-1) that functions as both a transcriptional coactivator and a pterin dehydratase []. X-ray crystallographic studies have shown that the ligand binds at four sites per tetrameric enzyme, with little apparent conformational change in the protein.; GO: 0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 2V6T_B 2V6U_A 2V6S_B 2EBB_A 1USM_A 1F93_B 1DCP_C 1DCH_E 3HXA_E 1DCO_C ....
Probab=24.42 E-value=58 Score=23.34 Aligned_cols=30 Identities=30% Similarity=0.538 Sum_probs=21.9
Q ss_pred CCCCCCCCC-CccCccCCceeecCCHHHHHHHHHH
Q 031660 87 PLMGWTSTG-DPYANVGDAGLSFDSKEAAREFAER 120 (155)
Q Consensus 87 PLMGWtss~-D~~sqv~~~~L~F~SkE~AI~faek 120 (155)
.|-||.-.+ ..+.. ...|++-..|++|..+
T Consensus 16 ~l~~W~~~~~~~l~r----~f~f~~f~~a~~f~~~ 46 (95)
T PF01329_consen 16 ELPGWKLDGGGRLER----TFKFKDFAEAVEFVNR 46 (95)
T ss_dssp TSTTSEEETSSEEEE----EEE-SSHHHHHHHHHH
T ss_pred cCcCCEECCCCcEEE----EEEeCCHHHHHHHHHH
Confidence 567898888 44433 7899999999998654
No 61
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=24.23 E-value=74 Score=26.02 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=18.2
Q ss_pred cCCHHHHHHHHHHcCccEEEec
Q 031660 108 FDSKEAAREFAERHGWEYVVRK 129 (155)
Q Consensus 108 F~SkE~AI~faek~Gw~Y~V~~ 129 (155)
-.|.|+|++||++.|++..|..
T Consensus 24 ~~~~eea~~~a~~iGyPVliKa 45 (211)
T PF02786_consen 24 ISSVEEALEFAEEIGYPVLIKA 45 (211)
T ss_dssp BSSHHHHHHHHHHH-SSEEEEE
T ss_pred CCCHHHHHHHHHhcCCceEEee
Confidence 3789999999999999988754
No 62
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis]
Probab=23.91 E-value=77 Score=28.58 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=33.4
Q ss_pred CCCCCccCccCCceeecCCHHHHHHHHHHcCccEEEecCCCCccCcccccccCCCCCCC
Q 031660 92 TSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKWKGPP 150 (155)
Q Consensus 92 tss~D~~sqv~~~~L~F~SkE~AI~faek~Gw~Y~V~~p~~~~~~~KsYadNF~~~g~p 150 (155)
++.|||-.. -.|-.=|| .|+.||++|.|..|....-..-+-||.-.-..+|
T Consensus 245 arNGDTANK-------IGTy~LAv-~aKhhgipFyvaaP~tsid~~l~tG~eIiIEERp 295 (354)
T KOG1468|consen 245 ARNGDTANK-------IGTYQLAV-LAKHHGIPFYVAAPFTSIDLSLATGDEIIIEERP 295 (354)
T ss_pred eccCcchhh-------hhhhHHHH-HHHhcCCceEEeccccccccccCCCCeeEEeecC
Confidence 456777544 45667777 6999999999999987544444444444443333
No 63
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=23.90 E-value=61 Score=24.66 Aligned_cols=16 Identities=56% Similarity=0.760 Sum_probs=14.7
Q ss_pred eeecCCHHHHHHHHHH
Q 031660 105 GLSFDSKEAAREFAER 120 (155)
Q Consensus 105 ~L~F~SkE~AI~faek 120 (155)
-|.|.|+|||-+|.+.
T Consensus 87 GLnF~Se~eA~~F~~~ 102 (111)
T cd01207 87 GLNFGSKEDATMFASA 102 (111)
T ss_pred eeccCCHHHHHHHHHH
Confidence 7999999999999875
No 64
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=23.82 E-value=84 Score=22.11 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=21.9
Q ss_pred eeecCCHHHHHHHHHHcCccEEEecCCC
Q 031660 105 GLSFDSKEAAREFAERHGWEYVVRKPHR 132 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw~Y~V~~p~~ 132 (155)
.+-.=+.++|++-|++.|++-....|..
T Consensus 24 ~lGv~~~~eAl~~A~~~~lDLV~v~~~~ 51 (76)
T PF05198_consen 24 QLGVMSLREALRLAKEKGLDLVEVSPNA 51 (76)
T ss_dssp EEEEEEHHHHHHHHHHTT-EEEEEETTS
T ss_pred EeceEEHHHHHHHHHHcCCcEEEEcCCC
Confidence 3445578999999999999999887654
No 65
>COG4314 NosL Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]
Probab=23.62 E-value=59 Score=26.84 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=18.5
Q ss_pred eecCCHHHHHHHHHHcCccEEE
Q 031660 106 LSFDSKEAAREFAERHGWEYVV 127 (155)
Q Consensus 106 L~F~SkE~AI~faek~Gw~Y~V 127 (155)
+-|.++|+|.+|+.++|=...=
T Consensus 131 ~pF~~e~aA~~faa~~GGrvl~ 152 (176)
T COG4314 131 SPFSDEEAAERFAADNGGRVLR 152 (176)
T ss_pred ccccCHHHHHHHHHhcCCeEEe
Confidence 3599999999999999976543
No 66
>PRK12354 carbamate kinase; Reviewed
Probab=23.60 E-value=71 Score=28.23 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.6
Q ss_pred ecCCHHHHHHHHHHcCccEEEe
Q 031660 107 SFDSKEAAREFAERHGWEYVVR 128 (155)
Q Consensus 107 ~F~SkE~AI~faek~Gw~Y~V~ 128 (155)
.|-|+|+|.+.++++||.+...
T Consensus 125 ~~y~~~~a~~~~~e~g~~~~~d 146 (307)
T PRK12354 125 PVYDEAEAERLAAEKGWTIKPD 146 (307)
T ss_pred cccCHHHHHHHHHhcCCEEeec
Confidence 5999999999999999976665
No 67
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=23.32 E-value=74 Score=26.27 Aligned_cols=19 Identities=32% Similarity=0.644 Sum_probs=15.4
Q ss_pred cCCHHHHHHHHHHcCccEE
Q 031660 108 FDSKEAAREFAERHGWEYV 126 (155)
Q Consensus 108 F~SkE~AI~faek~Gw~Y~ 126 (155)
-.+++++.+||++||+++.
T Consensus 167 ~~~~~~~~~fA~~~~l~~v 185 (194)
T PF00926_consen 167 MARRDELEEFAKKHGLPIV 185 (194)
T ss_dssp BHCHHHHHHHHHHTT-EEE
T ss_pred cCCHHHHHHHHHHcCCcEE
Confidence 3578999999999999875
No 68
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=22.73 E-value=72 Score=19.82 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=11.9
Q ss_pred cCCHHHHHHHHHH
Q 031660 108 FDSKEAAREFAER 120 (155)
Q Consensus 108 F~SkE~AI~faek 120 (155)
|.|+.||..++.+
T Consensus 24 F~TkkeA~~~~~~ 36 (46)
T PF14657_consen 24 FKTKKEAEKALAK 36 (46)
T ss_pred CCcHHHHHHHHHH
Confidence 9999999999875
No 69
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=22.62 E-value=75 Score=26.90 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=17.1
Q ss_pred cCCHHHHHHHHHHcCccEE
Q 031660 108 FDSKEAAREFAERHGWEYV 126 (155)
Q Consensus 108 F~SkE~AI~faek~Gw~Y~ 126 (155)
...++++++||++||+++.
T Consensus 183 ma~~~~l~~fA~~h~l~~i 201 (218)
T PRK00910 183 MAKTPEIIAFGKLHNMPVL 201 (218)
T ss_pred cCCHHHHHHHHHHcCCcEE
Confidence 5689999999999999984
No 70
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=22.40 E-value=47 Score=28.32 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=20.2
Q ss_pred ccccCCCccccc--ceE-EEecCCCCCCC
Q 031660 40 GMVSGIPEEHLR--RRV-VIYTPARTATQ 65 (155)
Q Consensus 40 ~~vsG~P~e~~~--r~v-rIy~Pak~a~Q 65 (155)
...+|+--+++. +.| |||.|+|+|=+
T Consensus 125 ~sR~GvgnDLFdnaksI~rIicPsknAf~ 153 (225)
T PF08759_consen 125 KSRSGVGNDLFDNAKSIKRIICPSKNAFS 153 (225)
T ss_pred CeecCCCchhhhCccceEEEECCchhhHH
Confidence 456788888884 566 99999999843
No 71
>smart00757 CRA CT11-RanBPM. protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)
Probab=21.88 E-value=65 Score=22.08 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHcCccEE
Q 031660 110 SKEAAREFAERHGWEYV 126 (155)
Q Consensus 110 SkE~AI~faek~Gw~Y~ 126 (155)
+.++||.||+++=-+|.
T Consensus 2 ~~~eAi~yar~~l~~~~ 18 (99)
T smart00757 2 KIEEALAYARELLAPFA 18 (99)
T ss_pred cHHHHHHHHHHHHhhhc
Confidence 46899999998866664
No 72
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=21.80 E-value=97 Score=26.68 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=20.0
Q ss_pred cCCHHHHHHHHHHcCccEEEecC
Q 031660 108 FDSKEAAREFAERHGWEYVVRKP 130 (155)
Q Consensus 108 F~SkE~AI~faek~Gw~Y~V~~p 130 (155)
..|.||.+.+|..+|+.|.|.--
T Consensus 43 ~~S~Eel~~~~~~~gi~wiViik 65 (273)
T PF12745_consen 43 SPSQEELQSYCREDGISWIVIIK 65 (273)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEe
Confidence 35999999999999999998643
No 73
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=21.59 E-value=68 Score=25.74 Aligned_cols=30 Identities=30% Similarity=0.519 Sum_probs=25.6
Q ss_pred ceeecCCHHHHHHHHHHcCccEEEecCCCC
Q 031660 104 AGLSFDSKEAAREFAERHGWEYVVRKPHRP 133 (155)
Q Consensus 104 ~~L~F~SkE~AI~faek~Gw~Y~V~~p~~~ 133 (155)
.-++-+|.++=-+||+|+|+.|.+.....+
T Consensus 68 ~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~ 97 (157)
T COG1225 68 LGISPDSPKSHKKFAEKHGLTFPLLSDEDG 97 (157)
T ss_pred EEEeCCCHHHHHHHHHHhCCCceeeECCcH
Confidence 367899999999999999999998775543
No 74
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=21.36 E-value=82 Score=26.95 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=16.9
Q ss_pred cCCHHHHHHHHHHcCccEE
Q 031660 108 FDSKEAAREFAERHGWEYV 126 (155)
Q Consensus 108 F~SkE~AI~faek~Gw~Y~ 126 (155)
...++++++||++||+.+.
T Consensus 187 ma~~~~l~~fA~~~~l~ii 205 (230)
T PRK00014 187 MMRGASLERYAAKEGLVAL 205 (230)
T ss_pred ccCHHHHHHHHHHcCCcEE
Confidence 4678999999999999984
No 75
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=21.16 E-value=1e+02 Score=21.23 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=16.2
Q ss_pred HHHHHHHHcCccEEEecCC
Q 031660 113 AAREFAERHGWEYVVRKPH 131 (155)
Q Consensus 113 ~AI~faek~Gw~Y~V~~p~ 131 (155)
-|..||+++|++.++..|.
T Consensus 48 iA~~wA~~~gv~~~~~~ad 66 (71)
T PF10686_consen 48 IAARWARERGVPVIRFPAD 66 (71)
T ss_pred HHHHHHHHCCCeeEEeCcC
Confidence 4778999999999987765
No 76
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=21.14 E-value=87 Score=21.59 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCccEEEe
Q 031660 111 KEAAREFAERHGWEYVVR 128 (155)
Q Consensus 111 kE~AI~faek~Gw~Y~V~ 128 (155)
.++|++||+++|+.....
T Consensus 44 ~~~~l~~a~~~~~kv~p~ 61 (78)
T PF14542_consen 44 VEAALDYARENGLKVVPT 61 (78)
T ss_dssp HHHHHHHHHHTT-EEEET
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 478999999999987643
No 77
>cd06576 PASTA_Pbp2x-like_1 PASTA domain of PBP2x-like proteins, first repeat. Penicillin-binding proteins (PBPs) are the major targets for beta-lactam antibiotics, like penicillins and cephalosporins. Beta-lactam antibiotics specifically inhibit transpeptidase activity by acylating the active site serine. PBPs catalyze key steps in the synthesis of the peptidoglycan, such as the interconnecting of glycan chains (polymers of N-glucosamine and N-acetylmuramic acid residues) and the cross-linking (transpeptidation) of short stem peptides, which are connected to glycan chains. Peptidoglycan is essential in cell division and protects bacteria from osmotic shock and lysis. PBP2x is one of the two monofunctional high molecular mass PBPs in Streptococcus pneumoniae and has been seen as the primary PBP target in beta-lactam-resistant strains. The PASTA domain is found at the C-termini of several PBPs and bacterial serine/threonine kinases. The name PASTA is derived from PBP and Serine/Threonine
Probab=21.02 E-value=1.5e+02 Score=17.51 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHcCccEEEecC
Q 031660 109 DSKEAAREFAERHGWEYVVRKP 130 (155)
Q Consensus 109 ~SkE~AI~faek~Gw~Y~V~~p 130 (155)
.+.++|.+.+++.|+.+++..+
T Consensus 8 ~~~~~a~~~l~~~g~~~~~~~~ 29 (55)
T cd06576 8 KSVEEAKKELKEAGLQPVVIGN 29 (55)
T ss_pred CCHHHHHHHHHHCCCEEEEeCC
Confidence 5789999999999999987654
No 78
>PTZ00056 glutathione peroxidase; Provisional
Probab=21.02 E-value=91 Score=24.99 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.4
Q ss_pred cCCHHHHHHHHHHcCccEEEec
Q 031660 108 FDSKEAAREFAERHGWEYVVRK 129 (155)
Q Consensus 108 F~SkE~AI~faek~Gw~Y~V~~ 129 (155)
+++.|++.+|++++|+.|.|..
T Consensus 88 ~d~~e~~~~f~~~~~~~fpvl~ 109 (199)
T PTZ00056 88 FPNTKDIRKFNDKNKIKYNFFE 109 (199)
T ss_pred CCCHHHHHHHHHHcCCCceeee
Confidence 4788999999999999999853
No 79
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=20.87 E-value=1.4e+02 Score=19.29 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHcCccEEEecCCC
Q 031660 109 DSKEAAREFAERHGWEYVVRKPHR 132 (155)
Q Consensus 109 ~SkE~AI~faek~Gw~Y~V~~p~~ 132 (155)
.+.++.++.|+++|++......+.
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCC
Confidence 368999999999999999877664
No 80
>PF10009 DUF2252: Uncharacterized protein conserved in bacteria (DUF2252); InterPro: IPR018721 This domain has no known function.
Probab=20.72 E-value=60 Score=29.18 Aligned_cols=42 Identities=21% Similarity=0.401 Sum_probs=27.3
Q ss_pred CCCCCCCCCCCCCCCc---cCccCCceeecC----CHHHHHHHHHHcCc
Q 031660 82 QKWENPLMGWTSTGDP---YANVGDAGLSFD----SKEAAREFAERHGW 123 (155)
Q Consensus 82 ~~w~nPLMGWtss~D~---~sqv~~~~L~F~----SkE~AI~faek~Gw 123 (155)
+.-.||++||++.++- ..|+...+.+|+ +.++...||+-.|+
T Consensus 287 q~~sD~~LG~~~~~g~~f~VRql~p~k~~~d~~~l~~~~~~~~a~~~g~ 335 (385)
T PF10009_consen 287 QAASDPFLGWVTIDGRDFYVRQLRPMKGSVDLEDLDPEELQDYARLCGR 335 (385)
T ss_pred hhcCCcccCceeeCCceEEEEECCCcCCCcChhhCCHHHHHHHHHHHHH
Confidence 3567999999998761 123333333433 66888888887765
No 81
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=20.69 E-value=1.1e+02 Score=20.05 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHcCccEEEecC
Q 031660 110 SKEAAREFAERHGWEYVVRKP 130 (155)
Q Consensus 110 SkE~AI~faek~Gw~Y~V~~p 130 (155)
+.++=.+||+++|+.+.+.+.
T Consensus 37 s~~~i~~~~~~~G~~~~~~~~ 57 (67)
T cd03421 37 AKENVSRFAESRGYEVSVEEK 57 (67)
T ss_pred HHHHHHHHHHHcCCEEEEEec
Confidence 346888999999999987654
No 82
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=20.57 E-value=1.3e+02 Score=23.87 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=25.7
Q ss_pred CCCCCCCCccCccCCceeecCCHHHHHHHHHHcCccEEEec
Q 031660 89 MGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRK 129 (155)
Q Consensus 89 MGWtss~D~~sqv~~~~L~F~SkE~AI~faek~Gw~Y~V~~ 129 (155)
...-.+|||. -|.+--.-+.+++++|++++|..
T Consensus 74 V~~L~~GDP~--------~~~~~~~l~~~~~~~g~~veviP 106 (229)
T TIGR01465 74 VVRLHTGDPS--------IYGAIAEQMQLLEALGIPYEVVP 106 (229)
T ss_pred EEEEeCcCcc--------ccccHHHHHHHHHHCCCCEEEEC
Confidence 3445689994 57777788889999999999974
No 83
>PF09691 PulS_OutS: Bacterial chaperone lipoprotein (PulS_OutS); InterPro: IPR019114 This family comprises lipoproteins from gamma proteobacterial species: pullulanase secretion protein PulS protein of Klebsiella pneumoniae (P20440 from SWISSPROT), the lipoprotein OutS protein of Erwinia chrysanthemi (Q01567 from SWISSPROT) and the functionally uncharacterised type II secretion protein EtpO (Q7BSV3 from SWISSPROT) from Escherichia coli O157:H7. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family. In addition to the PulS/OutS proteins this entry also includes other functionally uncharacterised proteins, such as YacC from Escherischia coli (P0AA95 from SWISSPROT).; PDB: 3SOL_A 3UYM_A 3UTK_A 4A56_A.
Probab=20.54 E-value=65 Score=24.47 Aligned_cols=15 Identities=40% Similarity=0.762 Sum_probs=10.9
Q ss_pred HHHHHHHHHcCccEE
Q 031660 112 EAAREFAERHGWEYV 126 (155)
Q Consensus 112 E~AI~faek~Gw~Y~ 126 (155)
-.||.||+++||+..
T Consensus 53 ~~a~~~A~~~gWd~~ 67 (109)
T PF09691_consen 53 RAAVIFAQQRGWDTS 67 (109)
T ss_dssp HHHHHHHHHTT--CG
T ss_pred HHHHHHHHHcCCCcc
Confidence 379999999999864
No 84
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=20.21 E-value=1.2e+02 Score=19.62 Aligned_cols=18 Identities=22% Similarity=0.553 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHcCccEEE
Q 031660 110 SKEAAREFAERHGWEYVV 127 (155)
Q Consensus 110 SkE~AI~faek~Gw~Y~V 127 (155)
.++.+-+|-+++||-|+|
T Consensus 28 ~L~k~~~wld~rgWwYe~ 45 (45)
T PF12123_consen 28 ELDKFTAWLDERGWWYEV 45 (45)
T ss_dssp HHHHHHHHHHHTT--EEE
T ss_pred HHHHHHHHHHhcCcEEeC
Confidence 467888999999999986
No 85
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=20.01 E-value=1.3e+02 Score=25.95 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=24.3
Q ss_pred CCCccCccCCceeecCCHHHHHHHHHHcCccEEEecCCC
Q 031660 94 TGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHR 132 (155)
Q Consensus 94 s~D~~sqv~~~~L~F~SkE~AI~faek~Gw~Y~V~~p~~ 132 (155)
+|||+ -|.=--+=++++.++|++|+|..--.
T Consensus 89 gGDP~--------iFGRggEE~~~l~~~gI~~eVVPGiT 119 (244)
T COG0007 89 GGDPY--------IFGRGGEEIEALAEAGIEFEVVPGIT 119 (244)
T ss_pred CCCCC--------eecCcHHHHHHHHHcCCceEEeCccc
Confidence 38885 47767777889999999999986433
Done!