Query 031660
Match_columns 155
No_of_seqs 150 out of 363
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 05:11:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lju_A Putative oxidoreductase 100.0 7.9E-53 2.7E-57 315.6 13.0 104 40-149 3-107 (108)
2 2jya_A AGR_C_3324P, uncharacte 100.0 6E-52 2.1E-56 310.0 8.3 96 51-149 3-99 (106)
3 4b0z_A RPN12, 26S proteasome r 84.2 0.47 1.6E-05 37.9 2.2 22 105-126 199-220 (229)
4 3t5v_A Nuclear mRNA export pro 83.8 0.88 3E-05 38.5 3.9 45 105-151 233-277 (316)
5 4b4t_T 26S proteasome regulato 77.6 0.92 3.1E-05 37.4 1.8 21 105-125 208-228 (274)
6 2hpu_A NOSL protein; alpha bet 68.0 3.1 0.00011 32.4 2.7 52 72-123 70-132 (175)
7 1ng7_A Poliovirus 3A-N, genome 66.3 2.5 8.5E-05 28.3 1.5 14 112-125 32-45 (60)
8 2yzh_A Probable thiol peroxida 54.3 13 0.00044 26.5 3.8 38 105-144 84-123 (171)
9 3bsu_A Ribonuclease H1, RNAse 39.6 15 0.00052 23.2 1.9 16 105-120 35-50 (53)
10 1qhk_A RNAse HI, protein (ribo 38.0 12 0.00041 23.2 1.2 14 105-118 33-46 (47)
11 3jtn_A YPBH, adapter protein M 35.5 21 0.0007 24.4 2.2 17 105-121 4-20 (91)
12 2fiu_A Conserved hypothetical 34.9 24 0.00084 24.4 2.5 15 105-119 58-72 (99)
13 1rz4_A Eukaryotic translation 33.6 14 0.00048 29.6 1.2 39 106-144 162-205 (226)
14 3jtp_A Adapter protein MECA 1; 33.4 25 0.00085 24.4 2.4 18 105-123 10-27 (98)
15 2nz2_A Argininosuccinate synth 30.9 19 0.00065 31.2 1.7 21 107-127 154-174 (413)
16 4dgh_A Sulfate permease family 30.4 22 0.00074 24.7 1.6 15 107-121 111-125 (130)
17 3lo3_A Uncharacterized conserv 30.1 33 0.0011 23.5 2.6 15 105-119 57-71 (94)
18 3syx_A Sprouty-related, EVH1 d 29.8 26 0.00087 26.4 2.0 44 71-120 66-114 (130)
19 1qc6_A EVH1 domain from ENA/VA 29.2 29 0.001 25.3 2.2 18 105-122 89-106 (130)
20 3eyt_A Uncharacterized protein 28.7 33 0.0011 23.4 2.4 22 109-130 78-99 (158)
21 2hw0_A Replicase; alpha+beta, 28.5 59 0.002 23.5 3.8 24 108-131 86-110 (115)
22 3p3d_A Nucleoporin 53; structu 27.6 27 0.00092 26.4 1.8 21 105-125 66-86 (132)
23 2ebb_A Pterin-4-alpha-carbinol 27.5 33 0.0011 24.2 2.2 30 87-120 14-44 (101)
24 3ewt_E Tumor necrosis factor r 27.4 34 0.0012 19.0 1.8 14 110-123 12-25 (25)
25 4g2e_A Peroxiredoxin; redox pr 27.4 46 0.0016 23.6 3.0 25 105-129 69-93 (157)
26 1snn_A DHBP synthase, 3,4-dihy 26.8 34 0.0011 28.0 2.4 20 109-128 194-213 (227)
27 2kln_A Probable sulphate-trans 26.6 23 0.00078 24.6 1.2 15 107-121 110-124 (130)
28 2gjf_A Designed protein; proca 26.2 87 0.003 20.1 4.0 25 105-129 52-76 (78)
29 1xod_A Spred1; sprouty, EVH1, 26.1 35 0.0012 24.7 2.2 17 105-121 92-108 (118)
30 1usm_A DCOH, hepatocyte nuclea 25.1 40 0.0014 22.5 2.2 31 89-121 1-31 (80)
31 1egx_A VAsp, vasodilator-stimu 25.1 38 0.0013 24.4 2.2 16 105-120 90-105 (115)
32 4fle_A Esterase; structural ge 25.0 23 0.00077 25.1 0.9 35 88-133 8-42 (202)
33 1gqe_A Release factor 2, RF2; 25.0 33 0.0011 29.8 2.1 16 115-130 153-168 (365)
34 1evh_A WH1 domain, protein (ME 24.5 40 0.0014 24.1 2.2 16 105-120 88-103 (112)
35 2p6w_A VP54, putative glycosyl 24.4 35 0.0012 27.8 2.0 20 110-129 25-44 (213)
36 3drn_A Peroxiredoxin, bacterio 23.7 62 0.0021 22.6 3.1 26 105-130 68-93 (161)
37 1ddw_A GLGF-domain protein hom 23.3 45 0.0015 24.3 2.3 16 105-120 87-102 (120)
38 2jp2_A Spred-2, sprouty-relate 23.2 43 0.0015 24.6 2.2 17 105-121 101-117 (126)
39 4dgf_A Sulfate transporter sul 23.0 37 0.0013 23.8 1.7 15 107-121 114-128 (135)
40 3e21_A HFAF1, FAS-associated f 22.6 30 0.001 21.4 1.1 18 109-126 19-36 (45)
41 3jst_A Putative pterin-4-alpha 22.4 57 0.002 22.6 2.6 31 86-120 16-48 (97)
42 2ihr_1 Peptide chain release f 22.2 36 0.0012 29.6 1.8 16 115-130 141-156 (365)
43 2a4v_A Peroxiredoxin DOT5; yea 21.9 61 0.0021 22.5 2.7 26 105-130 73-98 (159)
44 3d5a_X RF1, peptide chain rele 21.8 37 0.0013 29.4 1.8 16 115-130 132-147 (354)
45 1zbt_A RF-1, peptide chain rel 21.7 37 0.0013 29.6 1.8 16 115-130 150-165 (371)
46 1xvw_A Hypothetical protein RV 21.5 50 0.0017 22.7 2.2 26 105-130 75-100 (160)
47 1tif_A IF3-N, translation init 21.2 67 0.0023 22.0 2.7 28 105-132 25-52 (78)
48 4gqc_A Thiol peroxidase, perox 21.1 71 0.0024 22.9 3.0 25 105-129 72-96 (164)
49 2jpc_A SSRB; DNA binding prote 20.9 37 0.0013 20.2 1.2 19 105-123 40-58 (61)
50 3mio_A DHBP synthase, 3,4-dihy 20.7 52 0.0018 26.4 2.3 19 109-127 176-194 (206)
51 1psq_A Probable thiol peroxida 20.6 65 0.0022 22.6 2.7 26 105-130 79-105 (163)
52 1rq0_A RF-1, peptide chain rel 20.5 41 0.0014 29.0 1.8 16 115-130 113-128 (342)
53 1mwq_A Hypothetical protein HI 20.4 50 0.0017 22.2 1.9 25 105-129 65-96 (101)
54 3hh1_A Tetrapyrrole methylase 20.4 85 0.0029 21.7 3.2 31 91-129 84-115 (117)
55 3gkn_A Bacterioferritin comigr 20.4 53 0.0018 22.7 2.1 26 105-130 74-99 (163)
56 1tp9_A Peroxiredoxin, PRX D (t 20.4 84 0.0029 22.1 3.3 37 105-142 76-114 (162)
57 3llo_A Prestin; STAS domain, c 20.2 25 0.00084 24.7 0.3 16 106-121 126-141 (143)
58 1vjq_A Designed protein; struc 20.2 99 0.0034 19.8 3.3 25 105-129 44-68 (79)
59 2cqy_A Propionyl-COA carboxyla 20.1 83 0.0029 20.2 3.0 25 107-131 30-54 (108)
No 1
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=100.00 E-value=7.9e-53 Score=315.65 Aligned_cols=104 Identities=35% Similarity=0.582 Sum_probs=97.0
Q ss_pred ccccCCCcccccceEEEecCCCCCCCCCCCCCCCcEEEccCC-CCCCCCCCCCCCCCCccCccCCceeecCCHHHHHHHH
Q 031660 40 GMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMST-QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFA 118 (155)
Q Consensus 40 ~~vsG~P~e~~~r~vrIy~Pak~a~QSG~~~t~~W~LeFe~~-~~w~nPLMGWtss~D~~sqv~~~~L~F~SkE~AI~fa 118 (155)
+...|.|+. ++||||+|+|+|||||++++++|+|||++. ++|+|||||||||+||++|| +|+|+|+|+||+||
T Consensus 3 ~~~~~~~~~---~~arIy~Pak~amQSG~~~t~~W~lefe~~~~r~~nPLMGWtsS~D~~~qv---~L~F~skE~AiayA 76 (108)
T 2lju_A 3 GSMQEQVSN---VRARIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQV---CLSFTTRELAIAYA 76 (108)
T ss_dssp --CCCCCCC---CEEEEECCCCCCSSSSCCSCCCEEEEECCCSSCCCCCCCCCSSSCCCCCCS---CEEESSHHHHHHHH
T ss_pred cccCCCCCC---CEEEEeCCCCCccccCCCCCCceEEEEecCCCCccCCCccccCCCCccccc---eEecCCHHHHHHHH
Confidence 445666766 889999999999999999999999999996 69999999999999999998 99999999999999
Q ss_pred HHcCccEEEecCCCCccCcccccccCCCCCC
Q 031660 119 ERHGWEYVVRKPHRPLLKVKSYADNFKWKGP 149 (155)
Q Consensus 119 ek~Gw~Y~V~~p~~~~~~~KsYadNF~~~g~ 149 (155)
|||||+|+|++|+++++++|+|||||+|++.
T Consensus 77 ek~G~~y~V~ep~~~~~r~ksYadNF~~~r~ 107 (108)
T 2lju_A 77 VAHKIDYTVLQDNPRTIVPKSYADNFTKPRD 107 (108)
T ss_dssp HHTTCEEEEECSSCCCCCCCCCCCCCCCCCC
T ss_pred HHcCCEEEEecCCcccCCcCchHHHCCccCC
Confidence 9999999999999999999999999999975
No 2
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=100.00 E-value=6e-52 Score=310.00 Aligned_cols=96 Identities=38% Similarity=0.649 Sum_probs=77.1
Q ss_pred cceEEEecCCCCCCCCCCCCCCCcEEEccCC-CCCCCCCCCCCCCCCccCccCCceeecCCHHHHHHHHHHcCccEEEec
Q 031660 51 RRRVVIYTPARTATQQGSGKLGRWKINFMST-QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRK 129 (155)
Q Consensus 51 ~r~vrIy~Pak~a~QSG~~~t~~W~LeFe~~-~~w~nPLMGWtss~D~~sqv~~~~L~F~SkE~AI~faek~Gw~Y~V~~ 129 (155)
..+||||+|+|+|||||++++++|+|||++. ++|+|||||||||+||++|| +|+|+|+|+||+|||||||+|+|++
T Consensus 3 ~m~arIy~Pak~amQSG~~~t~~W~lefe~~~~rw~nPLMGWtsS~D~~~qv---~L~F~skE~AiayAek~G~~y~V~e 79 (106)
T 2jya_A 3 HMSAKIYRPAKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQV---KLTFETQEQAEAYAQRKGIEYRVIL 79 (106)
T ss_dssp -CEEEEECCSSCCCTTTTCCSCCEEEEEEEECCSCCCTTTCSCSCCCSEEEE---EEEESSHHHHHHHHHHHTCEEEECC
T ss_pred CcEEEEeCCCCCccccCCCCCCceEEEEecCCCCccCCCcCcCCCCCccccc---eEecCCHHHHHHHHHHcCCEEEEeC
Confidence 3679999999999999999999999999986 79999999999999999998 9999999999999999999999999
Q ss_pred CCCCccCcccccccCCCCCC
Q 031660 130 PHRPLLKVKSYADNFKWKGP 149 (155)
Q Consensus 130 p~~~~~~~KsYadNF~~~g~ 149 (155)
|+++++++|+|||||+|+++
T Consensus 80 p~~~~~r~ksYadNF~~~r~ 99 (106)
T 2jya_A 80 PKEATRKVVSYTDNFRFNRT 99 (106)
T ss_dssp CTTC----------------
T ss_pred CCcCcCCcCchHHhCCcCCC
Confidence 99999999999999999875
No 3
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=84.19 E-value=0.47 Score=37.92 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=20.1
Q ss_pred eeecCCHHHHHHHHHHcCccEE
Q 031660 105 GLSFDSKEAAREFAERHGWEYV 126 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw~Y~ 126 (155)
.|.|+|.++++.||+++||...
T Consensus 199 ~L~f~s~~e~~~f~~~~gw~i~ 220 (229)
T 4b0z_A 199 LLYLENTKETEKLAEERGWDIR 220 (229)
T ss_dssp HTTCSSHHHHHHHHHHHTCEEE
T ss_pred HhCCCCHHHHHHHHHHcCCEEe
Confidence 5899999999999999999763
No 4
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=83.84 E-value=0.88 Score=38.49 Aligned_cols=45 Identities=18% Similarity=0.119 Sum_probs=29.5
Q ss_pred eeecCCHHHHHHHHHHcCccEEEecCCCCccCcccccccCCCCCCCC
Q 031660 105 GLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKWKGPPK 151 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw~Y~V~~p~~~~~~~KsYadNF~~~g~p~ 151 (155)
.|.|+|.|++++||+.+||.+. .+. ....+...+-+.|..++.|.
T Consensus 233 ~L~Fds~ee~~~F~~~~gl~~~-~~~-~~~~~~~~~~~~~~~~~~p~ 277 (316)
T 3t5v_A 233 MLLFNNRQEIIEFCNYYSIEII-NGD-AADLKTLQHYSHKLSETQPL 277 (316)
T ss_dssp HTTCSSHHHHHHHHHHTTCCEE-TTT-EECGGGCCCSSSSCTTSCCC
T ss_pred HhCCCCHHHHHHHHHHCCCeEe-CCC-CchHHhhcchhccccccCCC
Confidence 5899999999999999999996 211 11122223445555555553
No 5
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.59 E-value=0.92 Score=37.43 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=19.4
Q ss_pred eeecCCHHHHHHHHHHcCccE
Q 031660 105 GLSFDSKEAAREFAERHGWEY 125 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw~Y 125 (155)
.|.|+|.+++++||+++||..
T Consensus 208 ~L~F~s~~e~~~F~~~~gW~~ 228 (274)
T 4b4t_T 208 LLFFNNEKETEKFALERNWPI 228 (274)
T ss_dssp HHTCCSHHHHHHHHHHTTCCC
T ss_pred HhCCCCHHHHHHHHHHcCCEE
Confidence 588999999999999999975
No 6
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=67.97 E-value=3.1 Score=32.40 Aligned_cols=52 Identities=19% Similarity=0.413 Sum_probs=33.2
Q ss_pred CCcEEEccC-CCCCCCCCCC-CCC--------CCCccCccC-CceeecCCHHHHHHHHHHcCc
Q 031660 72 GRWKINFMS-TQKWENPLMG-WTS--------TGDPYANVG-DAGLSFDSKEAAREFAERHGW 123 (155)
Q Consensus 72 ~~W~LeFe~-~~~w~nPLMG-Wts--------s~D~~sqv~-~~~L~F~SkE~AI~faek~Gw 123 (155)
..|+-+|.. ...|+.|--+ |.. .+|-..-++ ..-+-|.++++|.+|+++||=
T Consensus 70 aiyV~D~~t~~~~w~~p~~~~wIdA~~A~YVvgS~~~gpMG~~~l~pFa~k~dAe~Fa~~~GG 132 (175)
T 2hpu_A 70 VIYVNDMGAAGATWDQPGDGNWIAADKAFYVVGSARRGGMGAPEAVPFSSRDEAAAFVLAEGG 132 (175)
T ss_dssp EEEEEESCTTSSCTTCSCCCEEECGGGSEEEEESSSSCSSSCCCEEEESCHHHHHHHHHHTEE
T ss_pred EEEEEcCcccccccccCCCCceEECCeeEEEeCCCCCCCCCCCcccCcCCHHHHHHHHHHcCC
Confidence 458888876 3556655221 321 133222233 347889999999999999985
No 7
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=66.26 E-value=2.5 Score=28.30 Aligned_cols=14 Identities=29% Similarity=0.921 Sum_probs=12.5
Q ss_pred HHHHHHHHHcCccE
Q 031660 112 EAAREFAERHGWEY 125 (155)
Q Consensus 112 E~AI~faek~Gw~Y 125 (155)
|+-+.||+++||-.
T Consensus 32 ~eV~~YC~~kGwIi 45 (60)
T 1ng7_A 32 QEVRDYCEKKGWIV 45 (60)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHCCcee
Confidence 67799999999975
No 8
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=54.34 E-value=13 Score=26.53 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=28.9
Q ss_pred eeecCCHHHHHHHHHHcCc-cEEEecC-CCCccCcccccccC
Q 031660 105 GLSFDSKEAAREFAERHGW-EYVVRKP-HRPLLKVKSYADNF 144 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw-~Y~V~~p-~~~~~~~KsYadNF 144 (155)
-+..++.++..+|++++|+ .|.+... ..... +.|+-..
T Consensus 84 ~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~--~~~gv~~ 123 (171)
T 2yzh_A 84 VVSMDLPFAQKRFCESFNIQNVTVASDFRYRDM--EKYGVLI 123 (171)
T ss_dssp EEESSCHHHHHHHHHHTTCCSSEEEECTTTCGG--GGGTCBB
T ss_pred EEeCCCHHHHHHHHHHcCCCCeEEeecCccCcH--HHhCCEe
Confidence 6778999999999999999 8887654 33334 7777543
No 9
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=39.55 E-value=15 Score=23.24 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=13.7
Q ss_pred eeecCCHHHHHHHHHH
Q 031660 105 GLSFDSKEAAREFAER 120 (155)
Q Consensus 105 ~L~F~SkE~AI~faek 120 (155)
.-+|.|+++|.+|.+.
T Consensus 35 yK~F~t~~eA~~~l~~ 50 (53)
T 3bsu_A 35 FKKFATEDEAWAFVRK 50 (53)
T ss_dssp EEEESSHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHh
Confidence 5579999999999864
No 10
>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2
Probab=38.02 E-value=12 Score=23.18 Aligned_cols=14 Identities=36% Similarity=0.425 Sum_probs=12.1
Q ss_pred eeecCCHHHHHHHH
Q 031660 105 GLSFDSKEAAREFA 118 (155)
Q Consensus 105 ~L~F~SkE~AI~fa 118 (155)
.-+|.|+++|.+|.
T Consensus 33 yK~F~t~~eA~~~l 46 (47)
T 1qhk_A 33 YKKFNSYEQAKSFL 46 (47)
T ss_dssp CEEESCHHHHHHHH
T ss_pred cCCCCCHHHHHHHh
Confidence 45799999999985
No 11
>3jtn_A YPBH, adapter protein MECA 2; adaptor protein, competence, sporulation, protein binding; 2.09A {Bacillus subtilis} PDB: 3jto_A
Probab=35.48 E-value=21 Score=24.42 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=15.6
Q ss_pred eeecCCHHHHHHHHHHc
Q 031660 105 GLSFDSKEAAREFAERH 121 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~ 121 (155)
.++|++.|+.|++|+..
T Consensus 4 i~~F~~~edvI~~a~~l 20 (91)
T 3jtn_A 4 IYQFHSFEDIIQLSESL 20 (91)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHc
Confidence 68999999999999975
No 12
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=34.89 E-value=24 Score=24.40 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=13.6
Q ss_pred eeecCCHHHHHHHHH
Q 031660 105 GLSFDSKEAAREFAE 119 (155)
Q Consensus 105 ~L~F~SkE~AI~fae 119 (155)
-+.|+|.|+|.++..
T Consensus 58 iieFpS~~aa~~~~~ 72 (99)
T 2fiu_A 58 VIEFPSVQHAIDCYN 72 (99)
T ss_dssp EEEESSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHc
Confidence 789999999999875
No 13
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=33.65 E-value=14 Score=29.62 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=26.0
Q ss_pred eecCCHHHHHHHHHHcCccEE-----EecCCCCccCcccccccC
Q 031660 106 LSFDSKEAAREFAERHGWEYV-----VRKPHRPLLKVKSYADNF 144 (155)
Q Consensus 106 L~F~SkE~AI~faek~Gw~Y~-----V~~p~~~~~~~KsYadNF 144 (155)
|-|.|.++...||+++||..+ +...++...++|...++-
T Consensus 162 Lg~~s~~el~~fi~~~GW~vd~~g~I~~~n~e~~~k~~~~~E~i 205 (226)
T 1rz4_A 162 LGDLSDSQLKVWMSKYGWSADESGQIFICSQEESIKPKNIVEKI 205 (226)
T ss_dssp TTSCCHHHHHHHHHHHTCEECC--CEECCCHHHHTSCCCSSCCC
T ss_pred HcCCCHHHHHHHHHHCCCEECCCccEEeCCCcccccceeeeecc
Confidence 347899999999999999873 222222345666666553
No 14
>3jtp_A Adapter protein MECA 1; MECA;adaptor protein;degradation TAG, competence, sporulation, protein binding; 2.17A {Bacillus subtilis} PDB: 2y1r_I* 3pxg_a
Probab=33.43 E-value=25 Score=24.41 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=15.9
Q ss_pred eeecCCHHHHHHHHHHcCc
Q 031660 105 GLSFDSKEAAREFAERHGW 123 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw 123 (155)
.+.|++.|+.|++|+ .+.
T Consensus 10 i~~F~d~edvI~~a~-~~~ 27 (98)
T 3jtp_A 10 VLRFGDFEDVISLSK-LNV 27 (98)
T ss_dssp EEEESSHHHHHHHHH-TTC
T ss_pred EEEcCCHHHHHHHhC-CCC
Confidence 689999999999999 543
No 15
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=30.87 E-value=19 Score=31.22 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=17.7
Q ss_pred ecCCHHHHHHHHHHcCccEEE
Q 031660 107 SFDSKEAAREFAERHGWEYVV 127 (155)
Q Consensus 107 ~F~SkE~AI~faek~Gw~Y~V 127 (155)
.|.+|++-++||+++|++|..
T Consensus 154 ~~~sK~EI~~yA~~~Gip~~~ 174 (413)
T 2nz2_A 154 RFKGRNDLMEYAKQHGIPIPV 174 (413)
T ss_dssp TCC-CHHHHHHHHHTTCCCCS
T ss_pred cCCCHHHHHHHHHHcCCCeec
Confidence 466999999999999999874
No 16
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=30.44 E-value=22 Score=24.73 Aligned_cols=15 Identities=20% Similarity=0.027 Sum_probs=13.3
Q ss_pred ecCCHHHHHHHHHHc
Q 031660 107 SFDSKEAAREFAERH 121 (155)
Q Consensus 107 ~F~SkE~AI~faek~ 121 (155)
.|+|.++|++.|+.+
T Consensus 111 i~~s~~~Al~~~~~~ 125 (130)
T 4dgh_A 111 VYPVFEGALSAALTE 125 (130)
T ss_dssp EESSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH
Confidence 699999999999864
No 17
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=30.12 E-value=33 Score=23.46 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=13.6
Q ss_pred eeecCCHHHHHHHHH
Q 031660 105 GLSFDSKEAAREFAE 119 (155)
Q Consensus 105 ~L~F~SkE~AI~fae 119 (155)
-+.|+|.|+|.++..
T Consensus 57 iieFps~~aa~a~y~ 71 (94)
T 3lo3_A 57 ILEFPSREDAYNWYH 71 (94)
T ss_dssp EEEESSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHC
Confidence 899999999999864
No 18
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=29.83 E-value=26 Score=26.39 Aligned_cols=44 Identities=23% Similarity=0.338 Sum_probs=27.0
Q ss_pred CCCcEEEccCCC--CC---CCCCCCCCCCCCccCccCCceeecCCHHHHHHHHHH
Q 031660 71 LGRWKINFMSTQ--KW---ENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAER 120 (155)
Q Consensus 71 t~~W~LeFe~~~--~w---~nPLMGWtss~D~~sqv~~~~L~F~SkE~AI~faek 120 (155)
.+.++|++.-.. ++ ...+--|.-. | ++ =-|.|.|+|||-+|++.
T Consensus 66 d~~vvinc~I~~~l~Ynkatp~FHqWrd~-~---~~--yGL~F~S~~dA~~F~~~ 114 (130)
T 3syx_A 66 DKMVVLECMLKKDLIYNKVTPTFHHWKID-D---KK--FGLTFQSPADARAFDRG 114 (130)
T ss_dssp TCCEEEEEECCTTCEEEEEETTEEEEEET-T---EE--EEEEESSHHHHHHHHHH
T ss_pred CCeEEEeeeecCCceEEeccccccccccc-C---eE--eecccCCHHHHHHHHHH
Confidence 456888875321 11 1233345432 2 33 27999999999999974
No 19
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=29.19 E-value=29 Score=25.27 Aligned_cols=18 Identities=44% Similarity=0.593 Sum_probs=15.8
Q ss_pred eeecCCHHHHHHHHHHcC
Q 031660 105 GLSFDSKEAAREFAERHG 122 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~G 122 (155)
-|.|.|.|||-+|.++.-
T Consensus 89 GL~F~se~eA~~F~~~~~ 106 (130)
T 1qc6_A 89 GLNFASKEEATTFSNAML 106 (130)
T ss_dssp EEEESCHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHH
Confidence 899999999999987643
No 20
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=28.73 E-value=33 Score=23.42 Aligned_cols=22 Identities=9% Similarity=0.061 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHcCccEEEecC
Q 031660 109 DSKEAAREFAERHGWEYVVRKP 130 (155)
Q Consensus 109 ~SkE~AI~faek~Gw~Y~V~~p 130 (155)
++.++..+|++++|+.|.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~d 99 (158)
T 3eyt_A 78 MTPISLKAFLHEYRIKFPVGVD 99 (158)
T ss_dssp SCHHHHHHHHHHTTCCSCEEEE
T ss_pred CCHHHHHHHHHHcCCCceEEEc
Confidence 5999999999999999886543
No 21
>2hw0_A Replicase; alpha+beta, hydrolase, replication; NMR {Porcine circovirus 2}
Probab=28.55 E-value=59 Score=23.53 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=18.1
Q ss_pred cCCHHHHHHHHHHcCcc-EEEecCC
Q 031660 108 FDSKEAAREFAERHGWE-YVVRKPH 131 (155)
Q Consensus 108 F~SkE~AI~faek~Gw~-Y~V~~p~ 131 (155)
=.|.|+|++||.|.|=- ++.-+|.
T Consensus 86 rgs~~q~~~Yc~Keg~~i~e~G~~~ 110 (115)
T 2hw0_A 86 KGTDQQNKEYCSKEGNLLMECGAPR 110 (115)
T ss_dssp CSCHHHHHHHHHTTSCEEEEEECCC
T ss_pred cCCHHHHHHHhccCCcEEEEecccc
Confidence 36789999999999843 4665554
No 22
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=27.60 E-value=27 Score=26.37 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=19.3
Q ss_pred eeecCCHHHHHHHHHHcCccE
Q 031660 105 GLSFDSKEAAREFAERHGWEY 125 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw~Y 125 (155)
+|+|+|+.+|.+-+.+||--+
T Consensus 66 kItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 66 KITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp EEEBSSHHHHHHHHTTTTCEE
T ss_pred EEEcCCHHHHHHHHHhCCeEe
Confidence 899999999999999999654
No 23
>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}
Probab=27.52 E-value=33 Score=24.16 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=23.7
Q ss_pred CCCCCCCCCCc-cCccCCceeecCCHHHHHHHHHH
Q 031660 87 PLMGWTSTGDP-YANVGDAGLSFDSKEAAREFAER 120 (155)
Q Consensus 87 PLMGWtss~D~-~sqv~~~~L~F~SkE~AI~faek 120 (155)
.|-||+-.++. +.. ..+|++-.+|++|..+
T Consensus 14 ~l~gW~~~~~~~i~r----~f~F~~f~~a~~F~~~ 44 (101)
T 2ebb_A 14 KADGWKLADERWIVK----KYRFQDYLQGIEFVRR 44 (101)
T ss_dssp TSTTCEEETTTEEEE----EEECSSHHHHHHHHHH
T ss_pred cCCCCeECCCCCEEE----EEEeCCHHHHHHHHHH
Confidence 57789888777 433 7899999999998665
No 24
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=27.42 E-value=34 Score=18.97 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHcCc.
Q 031660 110 SKEAAREFAERHGW. 123 (155)
Q Consensus 110 SkE~AI~faek~Gw. 123 (155)
+..+...|+++||+
T Consensus 12 ~~~~Vk~fvR~~gi. 25 (25)
T 3ewt_E 12 TLSQVKGFVRKNGVx 26 (26)
T ss_pred hHHHHHHHHHHcCC.
Confidence 45788999999985
No 25
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=27.42 E-value=46 Score=23.57 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=22.0
Q ss_pred eeecCCHHHHHHHHHHcCccEEEec
Q 031660 105 GLSFDSKEAAREFAERHGWEYVVRK 129 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw~Y~V~~ 129 (155)
.+..++.++..+|++++|++|.+..
T Consensus 69 ~vs~d~~~~~~~~~~~~~~~~p~l~ 93 (157)
T 4g2e_A 69 GISVDPPFSNKAFKEHNKLNFTILS 93 (157)
T ss_dssp EEESSCHHHHHHHHHHTTCCSEEEE
T ss_pred eecccchhHHHHHHHHcCCcEEEEE
Confidence 5677999999999999999998764
No 26
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=26.77 E-value=34 Score=27.98 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHcCccEEEe
Q 031660 109 DSKEAAREFAERHGWEYVVR 128 (155)
Q Consensus 109 ~SkE~AI~faek~Gw~Y~V~ 128 (155)
..++++++||++||+++.-.
T Consensus 194 ar~~~l~~fA~~h~l~~iti 213 (227)
T 1snn_A 194 MSKNETKRYAEKHNLIYLSG 213 (227)
T ss_dssp CCHHHHHHHHHHHTCCEEEH
T ss_pred CCHHHHHHHHHHcCCcEEEH
Confidence 46899999999999998743
No 27
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=26.58 E-value=23 Score=24.61 Aligned_cols=15 Identities=20% Similarity=0.111 Sum_probs=13.7
Q ss_pred ecCCHHHHHHHHHHc
Q 031660 107 SFDSKEAAREFAERH 121 (155)
Q Consensus 107 ~F~SkE~AI~faek~ 121 (155)
.|+|.++|++.|++.
T Consensus 110 i~~t~~~Al~~~~~~ 124 (130)
T 2kln_A 110 IFMTLPTAVQAFRRR 124 (130)
T ss_dssp EESCHHHHHHHHTTC
T ss_pred eECCHHHHHHHHHhh
Confidence 699999999999985
No 28
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=26.17 E-value=87 Score=20.06 Aligned_cols=25 Identities=20% Similarity=0.104 Sum_probs=22.7
Q ss_pred eeecCCHHHHHHHHHHcCccEEEec
Q 031660 105 GLSFDSKEAAREFAERHGWEYVVRK 129 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw~Y~V~~ 129 (155)
.+.....++-.+|-+++|++|+|.-
T Consensus 52 ~V~p~~~~~f~~~L~~~~I~y~Vli 76 (78)
T 2gjf_A 52 LIPSDMVEWFLEMLKAKGIPFTVYV 76 (78)
T ss_dssp EECTTSHHHHHHHHHHHTCCEEEEE
T ss_pred EECHHHHHHHHHHHHHCCCcEEEEe
Confidence 7789999999999999999999863
No 29
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=26.08 E-value=35 Score=24.68 Aligned_cols=17 Identities=41% Similarity=0.634 Sum_probs=15.4
Q ss_pred eeecCCHHHHHHHHHHc
Q 031660 105 GLSFDSKEAAREFAERH 121 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~ 121 (155)
-|.|.|++||-+|+++-
T Consensus 92 GL~F~se~eA~~F~~~v 108 (118)
T 1xod_A 92 GLTFQSPADARAFDRGI 108 (118)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHH
Confidence 79999999999998864
No 30
>1usm_A DCOH, hepatocyte nuclear factor 1-alpha; transcriptional stimulator, dimerization cofactor, dehydratase, 4A-carbinolamine dehydratase; 1.2A {Thermus thermophilus} SCOP: d.74.1.1 PDB: 1uso_A
Probab=25.13 E-value=40 Score=22.54 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=20.2
Q ss_pred CCCCCCCCccCccCCceeecCCHHHHHHHHHHc
Q 031660 89 MGWTSTGDPYANVGDAGLSFDSKEAAREFAERH 121 (155)
Q Consensus 89 MGWtss~D~~sqv~~~~L~F~SkE~AI~faek~ 121 (155)
+||+-.+|+.. +. ...+|++-.+|++|..+-
T Consensus 1 ~gW~~~~~~~~-i~-r~f~F~~f~~a~~F~~~V 31 (80)
T 1usm_A 1 MDWEERENLKR-LV-KTFAFPNFREALDFANRV 31 (80)
T ss_dssp CCCEEC---CC-EE-EEEECSSHHHHHHHHHHH
T ss_pred CCCeEeCCccE-EE-EEEEeCCHHHHHHHHHHH
Confidence 58887777432 21 378999999999987653
No 31
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=25.10 E-value=38 Score=24.36 Aligned_cols=16 Identities=56% Similarity=0.816 Sum_probs=14.9
Q ss_pred eeecCCHHHHHHHHHH
Q 031660 105 GLSFDSKEAAREFAER 120 (155)
Q Consensus 105 ~L~F~SkE~AI~faek 120 (155)
-|.|.|++||-+|.++
T Consensus 90 GLnF~se~eA~~F~~~ 105 (115)
T 1egx_A 90 GLNFGSKEDAAQFAAG 105 (115)
T ss_dssp EEEESSHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHH
Confidence 7999999999999876
No 32
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=25.03 E-value=23 Score=25.14 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=23.4
Q ss_pred CCCCCCCCCccCccCCceeecCCHHHHHHHHHHcCccEEEecCCCC
Q 031660 88 LMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRP 133 (155)
Q Consensus 88 LMGWtss~D~~sqv~~~~L~F~SkE~AI~faek~Gw~Y~V~~p~~~ 133 (155)
|-||.|+.+..- ...-.+||+++|..|.|..|.-+
T Consensus 8 lHGf~ss~~s~k-----------~~~l~~~~~~~~~~~~v~~pdl~ 42 (202)
T 4fle_A 8 IHGFNSSPSSAK-----------ATTFKSWLQQHHPHIEMQIPQLP 42 (202)
T ss_dssp ECCTTCCTTCHH-----------HHHHHHHHHHHCTTSEEECCCCC
T ss_pred eCCCCCCCCccH-----------HHHHHHHHHHcCCCcEEEEeCCC
Confidence 568988765310 01123689999999999888754
No 33
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=25.00 E-value=33 Score=29.81 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=14.0
Q ss_pred HHHHHHcCccEEEecC
Q 031660 115 REFAERHGWEYVVRKP 130 (155)
Q Consensus 115 I~faek~Gw~Y~V~~p 130 (155)
.+||+++||+++|.+-
T Consensus 153 ~r~Ae~~g~k~evl~~ 168 (365)
T 1gqe_A 153 LRWAESRGFKTEIIEE 168 (365)
T ss_dssp HHHHHHTTCEEEEEEE
T ss_pred HHHHHHCCCeEEEEec
Confidence 5799999999999764
No 34
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=24.51 E-value=40 Score=24.09 Aligned_cols=16 Identities=56% Similarity=0.773 Sum_probs=14.8
Q ss_pred eeecCCHHHHHHHHHH
Q 031660 105 GLSFDSKEAAREFAER 120 (155)
Q Consensus 105 ~L~F~SkE~AI~faek 120 (155)
-|.|.|.+||-+|++.
T Consensus 88 GLnF~se~eA~~F~~~ 103 (112)
T 1evh_A 88 GLNFGSKEDANVFASA 103 (112)
T ss_dssp EEEESSHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHH
Confidence 7999999999999875
No 35
>2p6w_A VP54, putative glycosyltransferase (mannosyltransferase in glycosylating the PBCV-1 major...; HET: FLC; 1.60A {Paramecium bursaria chlorella virus 1} PDB: 2p72_A* 2p73_A*
Probab=24.42 E-value=35 Score=27.80 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHcCccEEEec
Q 031660 110 SKEAAREFAERHGWEYVVRK 129 (155)
Q Consensus 110 SkE~AI~faek~Gw~Y~V~~ 129 (155)
+.+-=++||++||++..+..
T Consensus 25 siKNK~DYArrHGYelfy~d 44 (213)
T 2p6w_A 25 TKELVEEYCSIHGYNFYYEE 44 (213)
T ss_dssp HHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHHcCCeEEEee
Confidence 44555789999999999864
No 36
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=23.67 E-value=62 Score=22.58 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=23.1
Q ss_pred eeecCCHHHHHHHHHHcCccEEEecC
Q 031660 105 GLSFDSKEAAREFAERHGWEYVVRKP 130 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw~Y~V~~p 130 (155)
.+..++.++..+|++++|++|.+...
T Consensus 68 ~vs~d~~~~~~~~~~~~~~~~~~~~d 93 (161)
T 3drn_A 68 GVSSDDINSHKRFKEKYKLPFILVSD 93 (161)
T ss_dssp EEESCCHHHHHHHHHHTTCCSEEEEC
T ss_pred EEeCCCHHHHHHHHHHhCCCceEEEC
Confidence 67789999999999999999998764
No 37
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=23.32 E-value=45 Score=24.29 Aligned_cols=16 Identities=44% Similarity=0.771 Sum_probs=14.7
Q ss_pred eeecCCHHHHHHHHHH
Q 031660 105 GLSFDSKEAAREFAER 120 (155)
Q Consensus 105 ~L~F~SkE~AI~faek 120 (155)
-|.|.|+|||-+|++.
T Consensus 87 GLnF~s~~eA~~F~~~ 102 (120)
T 1ddw_A 87 GLGFSSEHHLSKFAEK 102 (120)
T ss_dssp EEECSSHHHHHHHHHH
T ss_pred EeccCCHHHHHHHHHH
Confidence 7999999999999875
No 38
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=23.22 E-value=43 Score=24.63 Aligned_cols=17 Identities=41% Similarity=0.638 Sum_probs=15.3
Q ss_pred eeecCCHHHHHHHHHHc
Q 031660 105 GLSFDSKEAAREFAERH 121 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~ 121 (155)
-|.|.|.+||-+|+++-
T Consensus 101 GLnF~se~eA~~F~~~v 117 (126)
T 2jp2_A 101 GLTFQSPADARAFDRGV 117 (126)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHH
Confidence 89999999999998763
No 39
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=23.00 E-value=37 Score=23.79 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=13.2
Q ss_pred ecCCHHHHHHHHHHc
Q 031660 107 SFDSKEAAREFAERH 121 (155)
Q Consensus 107 ~F~SkE~AI~faek~ 121 (155)
.|+|.++||+.|+.+
T Consensus 114 i~~t~~~Al~~~~~~ 128 (135)
T 4dgf_A 114 VFDHIDKALAYAKLL 128 (135)
T ss_dssp BCSSHHHHHHHHHHH
T ss_pred eeCCHHHHHHHHHHH
Confidence 699999999999864
No 40
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=22.61 E-value=30 Score=21.38 Aligned_cols=18 Identities=22% Similarity=0.591 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHcCccEE
Q 031660 109 DSKEAAREFAERHGWEYV 126 (155)
Q Consensus 109 ~SkE~AI~faek~Gw~Y~ 126 (155)
+..+.|+.|-+.++|+++
T Consensus 19 ~d~~~A~~~Lea~nWDLe 36 (45)
T 3e21_A 19 ENIDEAITLLEQNNWDLV 36 (45)
T ss_dssp CCHHHHHHHHHHTTTCHH
T ss_pred CCHHHHHHHHHHcCCcHH
Confidence 456999999999999975
No 41
>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0
Probab=22.42 E-value=57 Score=22.60 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=23.0
Q ss_pred CCCCCCCCCCC--ccCccCCceeecCCHHHHHHHHHH
Q 031660 86 NPLMGWTSTGD--PYANVGDAGLSFDSKEAAREFAER 120 (155)
Q Consensus 86 nPLMGWtss~D--~~sqv~~~~L~F~SkE~AI~faek 120 (155)
..|-||+-..| -+.. ..+|++-.+|++|..+
T Consensus 16 ~~l~gW~~~~~~~~l~r----~f~f~~f~~a~~f~~~ 48 (97)
T 3jst_A 16 RALDGWQKVDGREAITR----SFKFKDFSTAFGFMAQ 48 (97)
T ss_dssp HTSTTCEECTTSSCEEE----EEECSSHHHHHHHHHH
T ss_pred hcCCCCeEeCCCCeEEE----EEEeCCHHHHHHHHHH
Confidence 35778987744 3433 7899999999998765
No 42
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=22.23 E-value=36 Score=29.61 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=14.1
Q ss_pred HHHHHHcCccEEEecC
Q 031660 115 REFAERHGWEYVVRKP 130 (155)
Q Consensus 115 I~faek~Gw~Y~V~~p 130 (155)
.+||+++||+++|.+-
T Consensus 141 ~r~Ae~~g~k~evl~~ 156 (365)
T 2ihr_1 141 TRFAERQGFQVEVVDL 156 (365)
T ss_dssp HHHHHTTTCEEEEEEE
T ss_pred HHHHHHcCCeEEEEec
Confidence 5899999999999864
No 43
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=21.88 E-value=61 Score=22.46 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=22.8
Q ss_pred eeecCCHHHHHHHHHHcCccEEEecC
Q 031660 105 GLSFDSKEAAREFAERHGWEYVVRKP 130 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw~Y~V~~p 130 (155)
-+..++.++..+|++++|+.|.+...
T Consensus 73 ~is~d~~~~~~~~~~~~~~~~~~l~D 98 (159)
T 2a4v_A 73 GLSADSVTSQKKFQSKQNLPYHLLSD 98 (159)
T ss_dssp EEESCCHHHHHHHHHHHTCSSEEEEC
T ss_pred EEeCCCHHHHHHHHHHhCCCceEEEC
Confidence 67889999999999999999988654
No 44
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=21.81 E-value=37 Score=29.40 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=14.0
Q ss_pred HHHHHHcCccEEEecC
Q 031660 115 REFAERHGWEYVVRKP 130 (155)
Q Consensus 115 I~faek~Gw~Y~V~~p 130 (155)
..||+++||+++|.+-
T Consensus 132 ~r~ae~~g~k~ev~~~ 147 (354)
T 3d5a_X 132 LRFAEEMGFETEVLDS 147 (354)
T ss_dssp HHHHHHHTCEEEEEEE
T ss_pred HHHHHHcCCeEEEEeC
Confidence 5799999999999764
No 45
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=21.70 E-value=37 Score=29.59 Aligned_cols=16 Identities=31% Similarity=0.910 Sum_probs=14.1
Q ss_pred HHHHHHcCccEEEecC
Q 031660 115 REFAERHGWEYVVRKP 130 (155)
Q Consensus 115 I~faek~Gw~Y~V~~p 130 (155)
..||+++||+++|.+-
T Consensus 150 ~r~Ae~~g~kvevl~~ 165 (371)
T 1zbt_A 150 QKYAENQGWKFEVMEA 165 (371)
T ss_dssp HHHHHHHTCEEEEEEE
T ss_pred HHHHHHcCCeEEEEec
Confidence 5899999999999764
No 46
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=21.51 E-value=50 Score=22.68 Aligned_cols=26 Identities=12% Similarity=0.314 Sum_probs=22.9
Q ss_pred eeecCCHHHHHHHHHHcCccEEEecC
Q 031660 105 GLSFDSKEAAREFAERHGWEYVVRKP 130 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw~Y~V~~p 130 (155)
.+..++.++..+|++++|+.|.+...
T Consensus 75 ~is~d~~~~~~~~~~~~~~~~~~~~d 100 (160)
T 1xvw_A 75 AISVGPPPTHKIWATQSGFTFPLLSD 100 (160)
T ss_dssp EEESCCHHHHHHHHHHHTCCSCEEEC
T ss_pred EEeCCCHHHHHHHHHhcCCCceEEec
Confidence 67789999999999999999987654
No 47
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=21.22 E-value=67 Score=22.02 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=23.5
Q ss_pred eeecCCHHHHHHHHHHcCccEEEecCCC
Q 031660 105 GLSFDSKEAAREFAERHGWEYVVRKPHR 132 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw~Y~V~~p~~ 132 (155)
.|-.-+.++|++-|++.|++.....|..
T Consensus 25 ~lGv~~~~eAl~~A~e~~LDLVevsp~a 52 (78)
T 1tif_A 25 QLGIKSKQEALEIAARRNLDLVLVAPNA 52 (78)
T ss_dssp EEEEEEHHHHHHHHHHTTCEEEEEETTS
T ss_pred CCCcccHHHHHHHHHHcCCCEEEECCCC
Confidence 3455678999999999999999888864
No 48
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=21.07 E-value=71 Score=22.91 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=22.0
Q ss_pred eeecCCHHHHHHHHHHcCccEEEec
Q 031660 105 GLSFDSKEAAREFAERHGWEYVVRK 129 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw~Y~V~~ 129 (155)
.+.-++.++.-+|++++|++|.+..
T Consensus 72 ~is~d~~~~~~~~~~~~~~~fp~l~ 96 (164)
T 4gqc_A 72 AISVDSPWCLKKFKDENRLAFNLLS 96 (164)
T ss_dssp EEESSCHHHHHHHHHHTTCCSEEEE
T ss_pred EecCCCHHHHHHHHHhcCcccceee
Confidence 5677999999999999999998764
No 49
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=20.91 E-value=37 Score=20.18 Aligned_cols=19 Identities=16% Similarity=0.057 Sum_probs=16.5
Q ss_pred eeecCCHHHHHHHHHHcCc
Q 031660 105 GLSFDSKEAAREFAERHGW 123 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw 123 (155)
+|...+..+++.+|.++||
T Consensus 40 kl~~~~~~~l~~~~~~~g~ 58 (61)
T 2jpc_A 40 KLQVHKVTELLNCARRMRL 58 (61)
T ss_dssp HHTCSSHHHHHHHHHCSCC
T ss_pred HHCCCCHHHHHHHHHHcCC
Confidence 5677899999999999987
No 50
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=20.74 E-value=52 Score=26.44 Aligned_cols=19 Identities=26% Similarity=0.552 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHcCccEEE
Q 031660 109 DSKEAAREFAERHGWEYVV 127 (155)
Q Consensus 109 ~SkE~AI~faek~Gw~Y~V 127 (155)
..++++++||++||+++.-
T Consensus 176 ar~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 176 AHTDELRVFADEHGLALIT 194 (206)
T ss_dssp CCHHHHHHHHHHHTCEEEE
T ss_pred CCHHHHHHHHHHcCCcEEE
Confidence 4689999999999998763
No 51
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=20.65 E-value=65 Score=22.56 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=22.2
Q ss_pred eeecCCHHHHHHHHHHcCc-cEEEecC
Q 031660 105 GLSFDSKEAAREFAERHGW-EYVVRKP 130 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw-~Y~V~~p 130 (155)
-+..++.++..+|++++|+ .|.+...
T Consensus 79 ~is~d~~~~~~~~~~~~~~~~~~~l~D 105 (163)
T 1psq_A 79 TVSMDLPFAQKRWCGAEGLDNAIMLSD 105 (163)
T ss_dssp EEESSCHHHHHHHHHHHTCTTSEEEEC
T ss_pred EEECCCHHHHHHHHHhcCCCCcEEecC
Confidence 6778999999999999999 8887554
No 52
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=20.55 E-value=41 Score=29.02 Aligned_cols=16 Identities=38% Similarity=0.787 Sum_probs=14.0
Q ss_pred HHHHHHcCccEEEecC
Q 031660 115 REFAERHGWEYVVRKP 130 (155)
Q Consensus 115 I~faek~Gw~Y~V~~p 130 (155)
..||+++||+++|.+-
T Consensus 113 ~r~ae~~g~kvevl~~ 128 (342)
T 1rq0_A 113 TRYAERKGWNLEVAEI 128 (342)
T ss_dssp HHHHHHHTCEEEEEEE
T ss_pred HHHHHHcCCeEEEEec
Confidence 5799999999999764
No 53
>1mwq_A Hypothetical protein HI0828; YCII_HAEIN, structural genomic structure 2 function project, S2F, unknown function; HET: MSE 1PE; 0.99A {Haemophilus influenzae} SCOP: d.58.4.7
Probab=20.43 E-value=50 Score=22.15 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=19.5
Q ss_pred eeecCCHHHHHHHHHH-----cCc--cEEEec
Q 031660 105 GLSFDSKEAAREFAER-----HGW--EYVVRK 129 (155)
Q Consensus 105 ~L~F~SkE~AI~faek-----~Gw--~Y~V~~ 129 (155)
-+.++|+|+|+++|++ +|+ .|+|.+
T Consensus 65 i~~a~s~eea~~~~~~dP~~~~G~~~~~eVrp 96 (101)
T 1mwq_A 65 IAQFENLQAAKDWAAQDPYVEAGVYADVIVKP 96 (101)
T ss_dssp EEECSSHHHHHHHHHTCHHHHTTCEEEEEEEE
T ss_pred EEEeCCHHHHHHHHHhCChhhcCCcceEEEEE
Confidence 5789999999999975 464 577764
No 54
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=20.40 E-value=85 Score=21.66 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=24.6
Q ss_pred CCC-CCCccCccCCceeecCCHHHHHHHHHHcCccEEEec
Q 031660 91 WTS-TGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRK 129 (155)
Q Consensus 91 Wts-s~D~~sqv~~~~L~F~SkE~AI~faek~Gw~Y~V~~ 129 (155)
--+ +|||. -|++-.+-++.|++.|++++|..
T Consensus 84 ~l~d~GdP~--------i~~~~~~l~~~~~~~gi~v~viP 115 (117)
T 3hh1_A 84 LVTDAGTPA--------ISDPGYTMASAAHAAGLPVVPVP 115 (117)
T ss_dssp EEEETTSCG--------GGSTTHHHHHHHHHTTCCEEEEC
T ss_pred EEecCCcCe--------EeccHHHHHHHHHHCCCcEEEeC
Confidence 345 68883 47888888999999999999863
No 55
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=20.39 E-value=53 Score=22.68 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=22.6
Q ss_pred eeecCCHHHHHHHHHHcCccEEEecC
Q 031660 105 GLSFDSKEAAREFAERHGWEYVVRKP 130 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw~Y~V~~p 130 (155)
-+..++.++..+|++++|+.|.+...
T Consensus 74 ~vs~d~~~~~~~~~~~~~~~~~~~~d 99 (163)
T 3gkn_A 74 GVSRDSVKSHDNFCAKQGFAFPLVSD 99 (163)
T ss_dssp EEESSCHHHHHHHHHHHCCSSCEEEC
T ss_pred EEeCCCHHHHHHHHHHhCCCceEEEC
Confidence 56789999999999999999988653
No 56
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=20.37 E-value=84 Score=22.12 Aligned_cols=37 Identities=5% Similarity=-0.099 Sum_probs=26.6
Q ss_pred eeecCCHHHHHHHHHHcCc--cEEEecCCCCccCcccccc
Q 031660 105 GLSFDSKEAAREFAERHGW--EYVVRKPHRPLLKVKSYAD 142 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw--~Y~V~~p~~~~~~~KsYad 142 (155)
-+..++.++..+|++++|+ +|.+..... ..-.+.||-
T Consensus 76 ~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~-~~~~~~~gv 114 (162)
T 1tp9_A 76 CISVNDPFVMKAWAKSYPENKHVKFLADGS-ATYTHALGL 114 (162)
T ss_dssp EEESSCHHHHHHHHHTCTTCSSEEEEECTT-SHHHHHTTC
T ss_pred EEECCCHHHHHHHHHhcCCCCCeEEEECCC-chHHHHcCc
Confidence 5778999999999999999 898765432 223345553
No 57
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=20.20 E-value=25 Score=24.72 Aligned_cols=16 Identities=25% Similarity=0.071 Sum_probs=13.5
Q ss_pred eecCCHHHHHHHHHHc
Q 031660 106 LSFDSKEAAREFAERH 121 (155)
Q Consensus 106 L~F~SkE~AI~faek~ 121 (155)
-.|+|.++||++|+.+
T Consensus 126 ~if~s~~~Al~~~~~~ 141 (143)
T 3llo_A 126 LLFHSIHDAVLGSQVR 141 (143)
T ss_dssp GEESSHHHHHHHTSSC
T ss_pred eEECcHHHHHHHHHhc
Confidence 3699999999998764
No 58
>1vjq_A Designed protein; structural genomics, engineered protein, PSI, protein struct initiative, structural genomics of pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Probab=20.17 E-value=99 Score=19.76 Aligned_cols=25 Identities=20% Similarity=0.104 Sum_probs=22.7
Q ss_pred eeecCCHHHHHHHHHHcCccEEEec
Q 031660 105 GLSFDSKEAAREFAERHGWEYVVRK 129 (155)
Q Consensus 105 ~L~F~SkE~AI~faek~Gw~Y~V~~ 129 (155)
.+.....++-.++-+++|+.|+|.-
T Consensus 44 ~V~p~~~~~f~~~L~~~~i~~~v~i 68 (79)
T 1vjq_A 44 LIPSDMVEWFLEMLKAKGIPFTVYV 68 (79)
T ss_dssp EECGGGHHHHHHHHHHTTCCEEEEE
T ss_pred EECHHHHHHHHHHHHHCCCcEEEEe
Confidence 6788899999999999999999864
No 59
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.08 E-value=83 Score=20.20 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=20.9
Q ss_pred ecCCHHHHHHHHHHcCccEEEecCC
Q 031660 107 SFDSKEAAREFAERHGWEYVVRKPH 131 (155)
Q Consensus 107 ~F~SkE~AI~faek~Gw~Y~V~~p~ 131 (155)
.+.+.+++.+++++.|+++.|....
T Consensus 30 ~~~~~~~~~~~~~~~~~P~vvKp~~ 54 (108)
T 2cqy_A 30 VVKDAEEAVRIAREIGYPVMIKASA 54 (108)
T ss_dssp CBSSHHHHHHHHHHHCSSEEEEETT
T ss_pred ccCCHHHHHHHHHhcCCCEEEEECC
Confidence 5678999999999999998886543
Done!