BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031662
(155 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 89.0 bits (219), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 70/123 (56%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
L AA+ E V L S G +++KDS GRT LH A+ GH IV+ LI +G D+NA +
Sbjct: 41 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 100
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA 145
+ TPLHYA GH E+ K L+ GA+++ +S +TP+D A G +I+ +
Sbjct: 101 SDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Query: 146 QLE 148
LE
Sbjct: 161 WLE 163
Score = 83.2 bits (204), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 65/112 (58%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
L+ AA + + V L G +++ DS GRT LH A+ GH IV+ LI +G D+NA +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
+ TPLHYA GH E+ K L+ GA+++ +S +TP+ A G +I+
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIV 119
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 71/123 (57%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
L AA E V L S G +++KDS GRT LH A+ NGH +V+ LI +G D+NA +
Sbjct: 41 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 100
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA 145
+ TPLH+A NGH EV K L+ GA+++ +S +TP+D A G +++ +
Sbjct: 101 SDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Query: 146 QLE 148
LE
Sbjct: 161 WLE 163
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 67/112 (59%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
L+ AA + + V L G +++ DS GRT LH A+ NGH +V+ LI +G D+NA +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
+ TPLH+A NGH EV K L+ GA+++ +S +TP+ A G +++
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVV 119
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 70/112 (62%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AAR +E V L AG +++KD GRT LH+A+ NGHL +V+ L+ G D+NA ++
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
TPLH A NGH EV K L+ +GA+++ + + +TP+ A G ++++ +
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 56/86 (65%)
Query: 55 GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
GRT LH+A+ NGHL +V+ L+ G D+NA ++ TPLH A NGH EV K L+ +GA++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 115 SVLNSHEQTPIDEALSRGKMDIIDAI 140
+ + + +TP+ A G ++++ +
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLL 87
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 68/115 (59%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AAR +E V L AG +++KD G T LH+A+ GHL IVE L+ G D+NA +++
Sbjct: 42 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 101
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTA 143
TPLH A GH E+ + L+ +GA+++ + +TP D A+ G DI + + A
Sbjct: 102 YTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKA 156
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 72/122 (59%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G +++KD G T LH+A+ GHL IVE L+ G D+NA +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA 145
++ TPLH A GH E+ + L+ +GA+++ + TP+ A G ++I++ + A A
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 146 QL 147
+
Sbjct: 126 DV 127
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 78/148 (52%), Gaps = 8/148 (5%)
Query: 1 MEQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALH 60
+E ADP+ ++ +P L AA E V L S G ++KDS GRT LH
Sbjct: 24 LENGADPN---ASDSDGRTP-----LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLH 75
Query: 61 MASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSH 120
A+ NGH IV+ L+ +G D NA + + TPLHYA NGH E+ K L+ GA+ + +S
Sbjct: 76 YAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSD 135
Query: 121 EQTPIDEALSRGKMDIIDAINTAVAQLE 148
+TP+D A G +I+ + LE
Sbjct: 136 GRTPLDLAREHGNEEIVKLLEKQGGWLE 163
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 64/112 (57%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
L+ AA + + V L G ++ DS GRT LH A+ NGH IV+ L+ +G D NA +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
+ TPLHYA NGH E+ K L+ GA+ + +S +TP+ A G +I+
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIV 119
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 68/115 (59%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AAR +E V L AG +++KD G T LH+A+ GHL IVE L+ G D+NA +++
Sbjct: 42 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 101
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTA 143
TPLH A GH E+ + L+ +GA+++ + +TP D A+ G DI + + A
Sbjct: 102 YTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKA 156
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 72/122 (59%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G +++KD G T LH+A+ GHL IVE L+ G D+NA +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA 145
++ TPLH A GH E+ + L+ +GA+++ + TP+ A G ++I++ + A A
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 146 QL 147
+
Sbjct: 126 DV 127
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 74/115 (64%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G ++++D G+T LH+A+ GHL IVE L+ G D+NA++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
+ +TPLH A L GH E+ + L+ +GA+++ +++ TP+ A G ++I++ +
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%)
Query: 35 IEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY 94
+E V L G +++ D G T LH+A+ GHL IVE L+ G D+NA++ TPLH
Sbjct: 60 LEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHL 119
Query: 95 ACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
A GH E+ + L+ GA+++ + +T D ++ G D+
Sbjct: 120 AADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 70/115 (60%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G ++++D G T LH+A+ GHL IVE L+ G D+NA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
TPLH A GH E+ + L+ +GA+++ +SH TP+ A RG ++I++ +
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 63/108 (58%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA + +E V L G +++KDS G T LH+A+ GHL IVE L+ G D+NAS+
Sbjct: 54 AAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHG 113
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
TPLH A GH E+ + L+ +GA+++ + +T D ++ G D+
Sbjct: 114 FTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AAR +E V L G +++ DS G T LH+A+ GHL IVE L+ G D+NA ++
Sbjct: 87 AARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFG 146
Query: 89 NTPLHYACLNGHTEVAKKL 107
T + NG+ ++A+ L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 67/120 (55%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA E V L S G ++KDS G+T LH+A+ NGH +V+ L+ +G D NA + +
Sbjct: 44 AAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 103
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLE 148
TPLH A NGH EV K L+ GA+ + +S +TP+D A G +++ + LE
Sbjct: 104 KTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 65/112 (58%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
L+ AA + + V L G +++ DS G+T LH+A+ NGH +V+ L+ +G D NA +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
+ TPLH A NGH EV K L+ GA+ + +S +TP+ A G +++
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVV 119
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 72/122 (59%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G +++KD G T LH+A+ GHL IVE L+ G D+NA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA 145
++ TPLH A GH E+ + L+ +GA+++ + TP+ A G ++I++ + A A
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 146 QL 147
+
Sbjct: 138 DV 139
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 64/108 (59%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AAR +E V L AG +++KD G T LH+A+ GHL IVE L+ G D+NA +++
Sbjct: 54 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 113
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
TPLH A GH E+ + L+ +GA+++ + +T D ++ G D+
Sbjct: 114 YTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDL 161
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 70/115 (60%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G +++ D QG T LH+A+ GH IVE L+ G D+NA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
+ TPLH A NGH E+ + L+ GA+++ +++ TP+ A RG ++I++ +
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVL 132
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 56/96 (58%)
Query: 41 LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGH 100
L G ++++D+ G T LH+A+ NGHL IVE L+ G D+NA + TPLH A GH
Sbjct: 66 LLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGH 125
Query: 101 TEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
E+ + L+ GA+++ + +T D ++ G D+
Sbjct: 126 LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 35 IEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY 94
+E V L G ++++D+ G T LH+A+ GHL IVE L+ G D+NA ++ T
Sbjct: 93 LEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 95 ACLNGHTEVAKKL 107
+ NG+ ++A+ L
Sbjct: 153 SIDNGNEDLAEIL 165
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 70/115 (60%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G +++ D+ G T LH+A++NGHL IVE L+ G D+NAS+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
TPLH A GH E+ + L+ GA+++ ++ TP+ A G ++I++ +
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVL 132
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 61/108 (56%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA +E V L G +++ D G T LH+A+A GHL IVE L+ G D+NA + +
Sbjct: 54 AASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDG 113
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
+TPLH A GH E+ + L+ GA+++ + +T D ++ G D+
Sbjct: 114 HTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 71/115 (61%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G +++ D+ G T LH+A+ +GHL IVE L+ G D++AS+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
TPLH A GH E+ + L+ +GA+++ ++S TP+ A G ++I++ +
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVL 132
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 59/108 (54%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA +E V L G +D+ D G T LH+A+ GHL IVE L+ G D+NA + +
Sbjct: 54 AAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDG 113
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
TPLH A G+ E+ + L+ GA+++ + +T D ++ G D+
Sbjct: 114 MTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 70/115 (60%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G +++ D+ G T LH+A+ GHL IVE L+ G D+NA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
+TPLH A L GH E+ + L+ GA+++ +++ TP+ A G ++I++ +
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 61/108 (56%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA Y +E V L G +++ D G T LH+A+ GHL IVE L+ G D+NA +
Sbjct: 54 AATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWG 113
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
+TPLH A + GH E+ + L+ GA+++ + +T D ++ G D+
Sbjct: 114 DTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 54/84 (64%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AAR +E V L AG +++KD GRT LH+A+ NGHL +V+ L+ G D+NA ++
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 89 NTPLHYACLNGHTEVAKKLVLSGA 112
TPLH A NGH EV K L+ +GA
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAGA 92
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 56/86 (65%)
Query: 55 GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
GRT LH+A+ NGHL +V+ L+ G D+NA ++ TPLH A NGH EV K L+ +GA++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 115 SVLNSHEQTPIDEALSRGKMDIIDAI 140
+ + + +TP+ A G ++++ +
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLL 87
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 70/115 (60%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G +++ D+ G T LH+A+ GHL IVE L+ G D+NA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
+TPLH A L GH E+ + L+ GA+++ +++ TP+ A G ++I++ +
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 61/108 (56%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA Y +E V L G +++ D G T LH+A+ GHL IVE L+ G D+NA +
Sbjct: 54 AATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWG 113
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
+TPLH A + GH E+ + L+ GA+++ + +T D ++ G D+
Sbjct: 114 DTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGR--TALHMASANGHLGIVEYLIGRGVDINA 83
LL AA+ D+E V L + ++ +D +GR T LH A+ + +VEYL+ G D++A
Sbjct: 12 LLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Query: 84 SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
++ PLH AC GH EVA+ LV GA ++V + + TP+ EA ++GK +I
Sbjct: 71 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC 124
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 6/138 (4%)
Query: 8 SINRTQTTETSSPENIDA-----LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMA 62
++ + T ++ + +I+ L AA Y+ + V L G + +KD G LH A
Sbjct: 23 TVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA 82
Query: 63 SANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQ 122
+ GH + E L+ G +N ++ K TPLH A G E+ K L+ GA+ + N
Sbjct: 83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 142
Query: 123 TPIDEALSRGKMDIIDAI 140
TP+D + G DI D +
Sbjct: 143 TPLD-LVKDGDTDIQDLL 159
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGR--TALHMASANGHLGIVEYLIGRGVDINA 83
LL AA+ D+E V L + ++ +D +GR T LH A+ + +VEYL+ G D++A
Sbjct: 14 LLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 72
Query: 84 SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
++ PLH AC GH EVA+ LV GA ++V + + TP+ EA ++GK +I
Sbjct: 73 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC 126
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 6/138 (4%)
Query: 8 SINRTQTTETSSPENIDA-----LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMA 62
++ + T ++ + +I+ L AA Y+ + V L G + +KD G LH A
Sbjct: 25 TVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA 84
Query: 63 SANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQ 122
+ GH + E L+ G +N ++ K TPLH A G E+ K L+ GA+ + N
Sbjct: 85 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 144
Query: 123 TPIDEALSRGKMDIIDAI 140
TP+D + G DI D +
Sbjct: 145 TPLD-LVKDGDTDIQDLL 161
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 75.9 bits (185), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 69/115 (60%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G ++++D+ G T LH+A+ NGHL IVE L+ G D+NA +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
TPL A L GH E+ + L+ +GA+++ + TP+ A G ++I++ +
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 62/108 (57%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA +E V L G +++ D G T L +A+ GHL IVE L+ G D+NA++ E
Sbjct: 54 AAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEG 113
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
+TPLH A + GH E+ + L+ +GA+++ + +T D ++ G D+
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA + +E V L G +++ D +G T LH+A+ GHL IVE L+ G D+NA ++
Sbjct: 87 AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG 146
Query: 89 NTPLHYACLNGHTEVAKKL 107
T + NG+ ++A+ L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 75.9 bits (185), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGR--TALHMASANGHLGIVEYLIGRGVDINA 83
LL AA+ D+E V L + ++ +D +GR T LH A+ + +VEYL+ G D++A
Sbjct: 16 LLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 74
Query: 84 SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
++ PLH AC GH EVA+ LV GA ++V + + TP+ EA ++GK +I
Sbjct: 75 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC 128
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 6/146 (4%)
Query: 8 SINRTQTTETSSPENIDA-----LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMA 62
++ + T ++ + +I+ L AA Y+ + V L G + +KD G LH A
Sbjct: 27 TVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA 86
Query: 63 SANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQ 122
+ GH + E L+ G +N ++ K TPLH A G E+ K L+ GA+ + N
Sbjct: 87 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 146
Query: 123 TPIDEALSRGKMDIIDAINTAVAQLE 148
TP+D + G DI D + A L+
Sbjct: 147 TPLD-LVKDGDTDIQDLLRGDAALLD 171
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 75.9 bits (185), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Query: 28 AAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEE 87
AAA DD +V L + G +++ D G T LH+A+ANG L IVE L+ G D+NAS+
Sbjct: 14 AAAGQDD--EVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSA 71
Query: 88 KNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
TPLH A +GH E+ + L+ GA+++ + TP+ A G+++I++ +
Sbjct: 72 GITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 64/108 (59%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA +E V L G +++ DS G T LH+A+ +GHL IVE L+ G D+NA +
Sbjct: 46 AAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAG 105
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
TPLH A L+G E+ + L+ GA+++ ++ T D ++++G+ D+
Sbjct: 106 WTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDL 153
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 30 ARYDD-IEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
A YD +E V L G +++ D G T LH+A+ +G L IVE L+ G D+NA +
Sbjct: 79 AAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALG 138
Query: 89 NTPLHYACLNGHTEVAKKL 107
T + G ++A+ L
Sbjct: 139 LTAFDISINQGQEDLAEIL 157
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 49/72 (68%)
Query: 57 TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
T LH+A+++GH IV+ L+ DINA NE N PLHYAC G +VA+ LV +GA +S+
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133
Query: 117 LNSHEQTPIDEA 128
N + + P+D+A
Sbjct: 134 CNKYGEMPVDKA 145
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 19 SPENIDALLAAARYDDIEDV-ISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGR 77
SPE +D + R + V + L + L+ D G + LH A G +VE LI R
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 78 GVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGK 133
G IN N +TPLH A +GH ++ +KL+ A+I+ +N H P+ A G+
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 117
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 80 DINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDA 139
D+N ++ +PLH+AC G + V + L++ GA I+V+N + TP+ A S G DI+
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 140 I 140
+
Sbjct: 91 L 91
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 49/72 (68%)
Query: 57 TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
T LH+A+++GH IV+ L+ DINA NE N PLHYAC G +VA+ LV +GA +S+
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 128
Query: 117 LNSHEQTPIDEA 128
N + + P+D+A
Sbjct: 129 CNKYGEMPVDKA 140
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%)
Query: 48 LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKL 107
L+ D G + LH A G +VE LI RG IN N +TPLH A +GH ++ +KL
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 86
Query: 108 VLSGANISVLNSHEQTPIDEALSRGK 133
+ A+I+ +N H P+ A G+
Sbjct: 87 LQYKADINAVNEHGNVPLHYACFWGQ 112
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 80 DINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDA 139
D+N ++ +PLH+AC G + V + L++ GA I+V+N + TP+ A S G DI+
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 140 I 140
+
Sbjct: 86 L 86
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 67/115 (58%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G ++ D GRT LHMA+A GHL IVE L+ G D+NA +
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
TPLH A GH E+ + L+ GA+++ ++ TP+ A G ++I++ +
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVL 120
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 60/108 (55%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA +E V L G +++ D+ G T LH+A++ GHL IVE L+ G D+NA +
Sbjct: 42 AAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATG 101
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
TPL+ A GH E+ + L+ GA+++ + +T D ++ G D+
Sbjct: 102 ITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDL 149
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 69/115 (60%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G +++ D+ G T LH+A+ +GHL IVE L+ G D++A++
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
TPLH A + GH E+ + L+ GA+++ + TP+ A G ++I++ +
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVL 132
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%)
Query: 35 IEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY 94
+E V L G +D+ D G T LH+A+ GHL IVE L+ G D+NA + +TPLH
Sbjct: 60 LEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHL 119
Query: 95 ACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
A GH E+ + L+ GA+++ + +T D ++ G D+
Sbjct: 120 AADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA +E V L G +++ D G T LH+A+ GHL IVE L+ G D+NA ++
Sbjct: 87 AAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFG 146
Query: 89 NTPLHYACLNGHTEVAK 105
T + NG+ ++AK
Sbjct: 147 KTAFDISIDNGNEDLAK 163
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 66/115 (57%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G +++ D G T LH+ NGHL I+E L+ D+NAS+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
+ TPLH A GH E+ + L+ GA+++ ++ TP+ A G ++I++ +
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 53/89 (59%)
Query: 48 LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKL 107
+++ D G T LH+A+ GHL IVE L+ G D+NA + + TPLH A +GH E+ + L
Sbjct: 73 VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Query: 108 VLSGANISVLNSHEQTPIDEALSRGKMDI 136
+ GA+++ + +T D ++ G D+
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 27 LAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNE 86
LAA R +E V L G +++ D QG T LH+A+ +GHL IVE L+ G D+NA ++
Sbjct: 86 LAAYR-GHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDK 144
Query: 87 EKNTPLHYACLNGHTEVAKKL 107
T + NG+ ++A+ L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 66/111 (59%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G +++KD G T L++A+A+GHL IVE L+ G D+NA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
TPLH A GH E+A+ L+ GA+++ + +T D ++ G D+
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDL 128
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 63/108 (58%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA+ +E V L G +++ D+ G T LH+A+ NGHL IVE L+ G D+NA + E
Sbjct: 54 AAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEG 113
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
TPLH A +GH E+ + L+ GA+++ + +T D ++ G D+
Sbjct: 114 FTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G +++ D G T LH+A+ GHL IVE L+ G D+NA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
TPLH A NGH E+ + L+ GA+++ + TP+ A G ++I++ +
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 70/115 (60%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G +++ D G T LH+A+ GHL IVE L+ G D+NA +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
+TPLH A GH E+ + L+ +GA+++ + + TP+ A +RG ++I++ +
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 62/108 (57%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA + +E V L G +++ D+ G T LH+A+ GHL IVE L+ G D+NA ++
Sbjct: 54 AAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNG 113
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
TPLH A GH E+ + L+ GA+++ + +T D +++ G D+
Sbjct: 114 ITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDL 161
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 65/111 (58%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G +++ D +G T LH+A+ HL IVE L+ G D+NA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
+ +TPLH A L GH E+ + L+ GA+++ + +T D ++ G D+
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 69/115 (60%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G ++++D+ G T LH+A+ GHL IVE L+ G D+NA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
+TPLH A GH E+ + L+ GA+++ ++ TP+ A G ++I++ +
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 60/108 (55%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AAR +E V L G +++ D G T LH+A+ GHL IVE L+ G D+NA +
Sbjct: 54 AARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIG 113
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
+TPLH A GH E+ + L+ GA+++ + +T D ++ G D+
Sbjct: 114 STPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 62/111 (55%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL A R ++V L + G +++ D G T LH+A+ GHL IVE L+ G D+NAS+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
TPLH A GH E+ + L+ GA+++ + +T D ++ G D+
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA+ +E V L G +++ DS GRT LH+A+ GHL IVE L+ G D+NA ++
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 89 NTPLHYACLNGHTEVAKKL 107
T + NG+ ++A+ L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 68/115 (59%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G +++ D G T LH+A+ GHL IVE L+ G D+NA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
TPLH A GH EV + L+ +GA+++ + + TP+ A + G ++I++ +
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVL 132
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 61/108 (56%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA + +E V L G +++ DS G T LH+A+ GHL +VE L+ G D+NA++
Sbjct: 54 AAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNG 113
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
TPLH A GH E+ + L+ GA+++ + +T D ++ G D+
Sbjct: 114 FTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA +E V L G +++ D G T LH+A+ GHL IVE L+ G D+NA ++
Sbjct: 87 AADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFG 146
Query: 89 NTPLHYACLNGHTEVAKKL 107
T + NG+ ++A+ L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 58/108 (53%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA+Y L AGV D++ RT LHMA++ GH IVE L+ G D+NA + K
Sbjct: 41 AAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLK 100
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
T LH+A + H EV + L+ GA++ + +T D ++ G D+
Sbjct: 101 MTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL 148
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G P + D G + LH+A+ GH E L+ GV +A
Sbjct: 6 LLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
+ TPLH A GH + + L+ GA+++ + + T + A ++++ +
Sbjct: 65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 63/111 (56%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G +++ D G T LH+A+ GHL IVE L+ G D+NA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
TPLH A + GH E+ + L+ GA+++ + +T D ++ G D+
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA+ +E V L G ++++D+ G T LH+A+ GHL IVE L+ G D+NA ++
Sbjct: 54 AAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFG 113
Query: 89 NTPLHYACLNGHTEVAKKL 107
T + NG+ ++A+ L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 62/111 (55%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL A R ++V L + G +++ D G T LH+A+ GHL IVE L+ G D+NAS+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
TPLH A GH E+ + L+ GA+++ + +T D ++ G D+
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA+ +E V L G +++ D GRT LH+A+ GHL IVE L+ G D+NA ++
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 89 NTPLHYACLNGHTEVAKKL 107
T + NG+ ++A+ L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 73/133 (54%), Gaps = 1/133 (0%)
Query: 16 ETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLI 75
+T S + L+ AA + +E V L AG +D KD++G T LH+A+ GH +V+YL+
Sbjct: 38 DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL 97
Query: 76 GRG-VDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKM 134
G +D+N ++ TP+ +A H ++ K L+ G++I++ ++ E + A G +
Sbjct: 98 SNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV 157
Query: 135 DIIDAINTAVAQL 147
DI + + A L
Sbjct: 158 DIAEILLAAKCDL 170
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
L AAA ++ L AG +D+ RT L A+ N HL V+YLI G ++ +
Sbjct: 15 LHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKD 74
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSG-ANISVLNSHEQTPIDEALSRGKMDII 137
E +T LH A GH EV + L+ +G +++ + TP+ A +D++
Sbjct: 75 AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 56 RTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANIS 115
R+ LH A+ GH+ I L+ G +I+ +E++ TPL A N H E K L+ +GA +
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 116 VLNSHEQTPIDEALSRGKMDII 137
++ T + A +G +++
Sbjct: 72 PKDAEGSTCLHLAAKKGHYEVV 93
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 51/103 (49%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
++ A Y ++ V L S G ++ +D++ LH A+ +G + I E L+ D++A N
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN 174
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA 128
++PLH A + + +++++ N +TP+ A
Sbjct: 175 IHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 79 VDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
++ ++ K +PLH A GH ++ LV +GANI + ++TP+ EA ++ +
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Score = 32.7 bits (73), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 41 LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGH 100
L +A L + + G + LH+A+ V + R D+ N+E TPL A LN
Sbjct: 163 LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLN-- 220
Query: 101 TEVAKKLVLSGA 112
++V L +S A
Sbjct: 221 SQVWSALQMSKA 232
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 63/111 (56%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G ++++D G T LH+A+ N HL IVE L+ G D+NA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
TPLH + GH E+ + L+ GA+++ + +T D ++ G D+
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 61/111 (54%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G +++ D G T LH+A+ GHL IVE L+ G D+NA+
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
TPLH A H E+ + L+ GA+++ + +T D ++ G D+
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA+ E+V L S G ++++ G T LH+A+ NGH IV+ L+ +G D+NA +++
Sbjct: 16 AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG 75
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISV 116
NTP H A NGH E+ K L GA+++
Sbjct: 76 NTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 50 SKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVL 109
SKD G T LH A+ NGH V+ L+ +G D+NA +++ NTPLH A NGH E+ K L+
Sbjct: 6 SKD--GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
Query: 110 SGANISVLNSHEQTPIDEALSRGKMDII 137
GA+++ + TP A G +I+
Sbjct: 64 KGADVNARSKDGNTPEHLAKKNGHHEIV 91
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 61/113 (53%)
Query: 25 ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
AL A E V L GVP++ KD G + LH+A++ G IV+ L+G+G +NA
Sbjct: 43 ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 102
Query: 85 NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
N+ TPLHYA E+A L+ GAN + +E T + A ++G + +I
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI 155
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA + E + L G D+KD TA+H A+A G+L ++ L+ N + E
Sbjct: 113 AASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEG 172
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
NTPLH AC E AK LV GA+I + N E+TP+ +++G + +I
Sbjct: 173 NTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQ--VAKGGLGLI 219
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 52 DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSG 111
D RTALH A + GH IVE+L+ GV +N ++ +PLH A G E+ K L+ G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 96
Query: 112 ANISVLNSHEQTPIDEALSRGKMDI 136
A ++ +N + TP+ A S+ + +I
Sbjct: 97 AQVNAVNQNGCTPLHYAASKNRHEI 121
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%)
Query: 84 SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTA 143
++++ T LH+AC GHTE+ + L+ G ++ + +P+ A S G+ +I+ A+
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 144 VAQL 147
AQ+
Sbjct: 96 GAQV 99
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 61/113 (53%)
Query: 25 ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
AL A E V L GVP++ KD G + LH+A++ G IV+ L+G+G +NA
Sbjct: 44 ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 103
Query: 85 NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
N+ TPLHYA E+A L+ GAN + +E T + A ++G + +I
Sbjct: 104 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI 156
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA + E + L G D+KD TA+H A+A G+L ++ L+ N + E
Sbjct: 114 AASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEG 173
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
NTPLH AC E AK LV GA+I + N E+TP+ +++G + +I
Sbjct: 174 NTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQ--VAKGGLGLI 220
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 52 DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSG 111
D RTALH A + GH IVE+L+ GV +N ++ +PLH A G E+ K L+ G
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 112 ANISVLNSHEQTPIDEALSRGKMDI 136
A ++ +N + TP+ A S+ + +I
Sbjct: 98 AQVNAVNQNGCTPLHYAASKNRHEI 122
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%)
Query: 84 SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTA 143
++++ T LH+AC GHTE+ + L+ G ++ + +P+ A S G+ +I+ A+
Sbjct: 37 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 144 VAQL 147
AQ+
Sbjct: 97 GAQV 100
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 61/111 (54%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL A R ++V L + G +++ D G T LH+A+ GHL IVE L+ G D+NA +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDI 136
TPLH A GH E+ + L+ GA+++ + +T D ++ G D+
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA+ +E V L G ++++D GRT LH+A+ GHL IVE L+ G D+NA ++
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 89 NTPLHYACLNGHTEVAKKL 107
T + NG+ ++A+ L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 5/137 (3%)
Query: 5 ADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASA-GVPLDSKDSQGRTALHMAS 63
ADPS T E D LL AAR + E +++L + V + D + T LH+A+
Sbjct: 11 ADPSAKAVLTGEYKK----DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA 66
Query: 64 ANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQT 123
+ IV+ L+ G D++A ++ PLH AC GH EV + L+ GA ++ ++ + T
Sbjct: 67 GYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFT 126
Query: 124 PIDEALSRGKMDIIDAI 140
P+ EA S+ ++++ +
Sbjct: 127 PLHEAASKNRVEVCSLL 143
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA Y+ + V L G + +KD G LH A + GH + E L+ G +NA + +
Sbjct: 65 AAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ 124
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA 128
TPLH A EV L+ GA+ +++N H ++ +D A
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMA 164
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 25 ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGH---LGIVEYLIGRGVDI 81
+LL AAR D+ V + + + TALH A A+ H + E L+ +G ++
Sbjct: 181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV 240
Query: 82 NASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMD---IID 138
N N++ TPLH A H +V + L GA ++ L+S QT + A G + ++
Sbjct: 241 NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL 300
Query: 139 AINTAVAQLELGGFTVS 155
+ + + + L GFT +
Sbjct: 301 SYGSDPSIISLQGFTAA 317
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 49 DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV 108
+ KD G T L A + GH +V L+ G INASN + NT LH A + H V + L+
Sbjct: 146 NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLL 205
Query: 109 LSGANISVLNSHEQTPIDEALSRGK-MDIIDAINTAVAQLE 148
L GA++ VLN ++T +D A K M+++ + + VA L+
Sbjct: 206 LHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLD 246
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 15/128 (11%)
Query: 18 SSPENIDALLAAARYDDIEDVISL-----ASAGVPLDSKDSQGRTALHMASANGHLGIVE 72
SSP ++ AL A D+I L A+AG ++++ LH+A GH +V+
Sbjct: 87 SSPLHVAALHGRA------DLIPLLLKHGANAG----ARNADQAVPLHLACQQGHFQVVK 136
Query: 73 YLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRG 132
L+ N + NTPL YAC GH E+ L+ GA+I+ N+ T + EA+
Sbjct: 137 CLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEK 196
Query: 133 KMDIIDAI 140
+ +++ +
Sbjct: 197 HVFVVELL 204
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 45 GVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVA 104
GV + S+D G + LH+A+ +G ++ L+ G + A N ++ PLH AC GH +V
Sbjct: 78 GVNVTSQD--GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 105 KKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
K L+ S A + + TP+ A S G +++
Sbjct: 136 KCLLDSNAKPNKKDLSGNTPLIYACSGGHHELV 168
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 35/63 (55%)
Query: 78 GVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
G+ +N ++++ ++PLH A L+G ++ L+ GAN N+ + P+ A +G ++
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 138 DAI 140
+
Sbjct: 136 KCL 138
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LAA D E+V+ L G ++ + G TALH A + ++ +V++L+ G +IN +
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPID 126
E PLH A G+ ++A+ L+ GA++ +NS TP+D
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD 144
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 62 ASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHE 121
A ++G V L+ RG DIN +N + T LH AC++ + ++ K LV +GANI+ ++
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 122 QTPIDEALSRGKMDI 136
P+ A S G +DI
Sbjct: 107 WIPLHAAASCGYLDI 121
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 55 GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
G TALH+A+A G+ +++ LI D+N + + TPLH A G E + LV + ++
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258
Query: 115 SVLNSHEQTPIDEA 128
+N QT D A
Sbjct: 259 EAVNKVGQTAFDVA 272
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 66/175 (37%), Gaps = 63/175 (36%)
Query: 22 NIDALLA---AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRG 78
N+D L A A D+++ V L G ++ D++G LH A++ G+L I EYLI +G
Sbjct: 70 NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129
Query: 79 ----------------------------------VDINASNEEKN--------------- 89
VDI A+ +E+
Sbjct: 130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189
Query: 90 -----------TPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGK 133
T LH A G+TEV K L+ + ++++ + TP+ A GK
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK 244
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA + E + L G D+KD TA+H A+A G+L +V L+ N + E
Sbjct: 113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG 172
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
NTPLH AC E AK LV GA+I + N E+TP+ +++G + +I
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQ--VAKGGLGLI 219
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 52 DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSG 111
D RTALH A + GH IVE+L+ GV +N ++ +PLH A G E+ K L++ G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 112 ANISVLNSHEQTPIDEALSRGKMDI 136
A+++ +N + TP+ A S+ + +I
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHEI 121
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%)
Query: 25 ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
AL A E V L GVP++ KD G + LH+A++ G IV+ L+ +G +NA
Sbjct: 43 ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV 102
Query: 85 NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
N+ TPLHYA E+A L+ GAN + ++ T + A ++G + ++
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV 155
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 84 SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
++++ T LH+AC GHTE+ + L+ G ++ + +P+ A S G +I+ A+
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKAL 92
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA + E + L G D+KD TA+H A+A G+L +V L+ N + E
Sbjct: 113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG 172
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
NTPLH AC E AK LV GA+I + N E+TP+ +++G + +I
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQ--VAKGGLGLI 219
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 52 DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSG 111
D RTALH A + GH IVE+L+ GV +N ++ +PLH A G E+ K L++ G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 112 ANISVLNSHEQTPIDEALSRGKMDI 136
A+++ +N + TP+ A S+ + +I
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHEI 121
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%)
Query: 25 ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
AL A E V L GVP++ KD G + LH+A++ G IV+ L+ +G +NA
Sbjct: 43 ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAV 102
Query: 85 NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
N+ TPLHYA E+A L+ GAN + ++ T + A ++G + ++
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV 155
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 84 SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
++++ T LH+AC GHTE+ + L+ G ++ + +P+ A S G+ +I+ A+
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKAL 92
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%)
Query: 57 TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
T LH+AS GHL IV+ L+ RG N SN + TPLH A GHTEVAK L+ + A ++
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 117 LNSHEQTPIDEALSRGKMDIIDAI 140
+QTP+ A G +++ +
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLL 99
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
L+A + + DV L GV +D+ G T LH+AS G++ +V++L+ D+NA
Sbjct: 284 LVAQEGHVPVADV--LIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT 341
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
+ +PLH A GHT++ L+ +GA+ + ++S TP+ A G + + D +
Sbjct: 342 KLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AA+ + +E SL G +++ QG T LH+A+ GH +V L+ + + N N+
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
TPLH GH VA L+ G + TP+ A G + ++ +
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%)
Query: 57 TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
T LHMA+ GH + +YL+ +NA ++ TPLH A GHT + K L+ + AN ++
Sbjct: 49 TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL 108
Query: 117 LNSHEQTPIDEALSRGKMDIIDAI 140
+ TP+ A G ++ + A+
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLAL 132
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%)
Query: 19 SPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRG 78
S + + L AA+ E V L S + + G T LH+ + GH+ + + LI G
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 301
Query: 79 VDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
V ++A+ TPLH A G+ ++ K L+ A+++ +P+ +A +G DI+
Sbjct: 302 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIV 360
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 1 MEQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALH 60
+E +A+P++ TT +P +I AAR +E V++L +G T LH
Sbjct: 100 LENNANPNL---ATTAGHTPLHI-----AAREGHVETVLALLEKEASQACMTKKGFTPLH 151
Query: 61 MASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSH 120
+A+ G + + E L+ R NA+ + TPLH A + + ++ K L+ G + +
Sbjct: 152 VAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN 211
Query: 121 EQTPIDEALSRGKMDIIDAINTAVAQLELGG 151
TP+ A + ++++ ++ L+ GG
Sbjct: 212 GYTPLHIAAKQNQVEVARSL------LQYGG 236
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 8/140 (5%)
Query: 1 MEQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALH 60
+E+DA P+ + + L A +++++ V L G S G T LH
Sbjct: 166 LERDAHPN--------AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLH 217
Query: 61 MASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSH 120
+A+ + + L+ G NA + + TPLH A GH E+ L+ AN ++ N
Sbjct: 218 IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 277
Query: 121 EQTPIDEALSRGKMDIIDAI 140
TP+ G + + D +
Sbjct: 278 GLTPLHLVAQEGHVPVADVL 297
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AAR E L +++K +T LH A+ GH +V+ L+ + N +
Sbjct: 54 AARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 113
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
+TPLH A GH E L+ A+ + + TP+ A GK+ + + +
Sbjct: 114 HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
L AA+Y + L ++ G T LH+A + +L IV+ L+ RG ++
Sbjct: 150 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA 209
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA 145
TPLH A EVA+ L+ G + + + TP+ A G +++ + + A
Sbjct: 210 WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQA 269
Query: 146 QLELG 150
LG
Sbjct: 270 NGNLG 274
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 47 PLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKK 106
L+ KD +G TAL A N LGI E L+ +G ++N + TPL ++ + G++E++
Sbjct: 60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYF 119
Query: 107 LVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLELG 150
L+ GAN++ N +TP+ A G+ +I+ + LELG
Sbjct: 120 LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL------LELG 157
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%)
Query: 1 MEQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALH 60
ME D + E E AL+ A + + + L S G +++KD G+T L
Sbjct: 47 MENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM 106
Query: 61 MASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANIS 115
+ G+ + +L+ G ++N N E TPL A G +E+ KKL+ GA+IS
Sbjct: 107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS 161
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 51 KDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLS 110
+DS RT L +A G ++ L+ + + E +T L +A N +A+KL+
Sbjct: 31 RDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK 90
Query: 111 GANISVLNSHEQTPI 125
G+N++ + +TP+
Sbjct: 91 GSNVNTKDFSGKTPL 105
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 41 LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGH 100
L G ++ ++ +G T L +AS G IV+ L+ G DI+A + T A + G
Sbjct: 120 LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR 179
Query: 101 TEVAK 105
EV K
Sbjct: 180 QEVIK 184
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 54 QGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGAN 113
+G T LH+AS G + VEYL+ G D N + TPLH AC +GH +V + L+ A
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 114 ISVLNSHEQTPIDEALSRGKMDII 137
++ +P+ +A G +DI+
Sbjct: 69 VNTTGYQNDSPLHDAAKNGHVDIV 92
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%)
Query: 34 DIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLH 93
DI V L G + KD G T LH A +GHL +VE L+ +N + + ++PLH
Sbjct: 22 DIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLH 81
Query: 94 YACLNGHTEVAKKLVLSGANISVLNSHEQTPID 126
A NGH ++ K L+ GA+ + +N P+D
Sbjct: 82 DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVD 114
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 54 QGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY 94
Q + LH A+ NGH+ IV+ L+ G NA N P+ Y
Sbjct: 75 QNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 19 SPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQ-GRTALHMASANGHLGIVEYLIGR 77
SP + AL DDIE V+ L G +++K SQ G+TAL +A ++G + +V+ L+
Sbjct: 147 SPIMLTALATLKTQDDIETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLAC 205
Query: 78 GVDINASNEEKNTPLHYACLNGHTEVAKKLV-LSGANISVLNSHEQTPIDEALSRGKMDI 136
D+N +++ +T L AC +GH E+A L+ + +IS+ + T + AL G+ +I
Sbjct: 206 EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEI 265
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 52 DSQGRTALHMASANGHLGIVEYLIGRGV-DINASNEEKNTPLHYACL-----NGHTEVAK 105
DS G TALH + ++ + +V+ L+ GV ++ N +P+ L E
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVL 167
Query: 106 KLVLSGANISVLNSHE-QTPIDEALSRGKMDIIDAI 140
+L G NI+ S QT + A+S G++D++ A+
Sbjct: 168 QLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKAL 202
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
L+ A+ + +IE V L G + +AL +AS G+ IV L+ R VDIN +
Sbjct: 40 LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA 145
TPL YA H + + L+ GA+++ TP+D A++ G + I +
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159
Query: 146 QL 147
+L
Sbjct: 160 KL 161
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 48/93 (51%)
Query: 48 LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKL 107
++ D +G T L ASA G + V +L+ G D + +E+ + L A G+T++ L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 108 VLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
+ +I++ + + TP+ A+ + ++A+
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G +++KD G T LH+A+ GHL IVE L+ G D+NA +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 86 EEKNTPLHYACLNGHTEVAKKL 107
+ T + NG+ ++A+ L
Sbjct: 66 KFGKTAFDISIDNGNEDLAEIL 87
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 55 GRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
G+ L A A G V L+ G D+NA +++ TPLH A GH E+ + L+ +GA++
Sbjct: 3 GKKLLEAARA-GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 115 SVLNSHEQTPIDEALSRGKMDIIDAINTA 143
+ + +T D ++ G D+ + + A
Sbjct: 62 NAQDKFGKTAFDISIDNGNEDLAEILQKA 90
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
L+ A+ + +IE V L G + +AL +AS G+ IV L+ R VDIN +
Sbjct: 40 LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA 145
TPL YA H + + L+ GA+++ TP+D A++ G + I +
Sbjct: 100 WNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159
Query: 146 QL 147
+L
Sbjct: 160 KL 161
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 48/93 (51%)
Query: 48 LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKL 107
++ D +G T L ASA G + V +L+ G D + +E+ + L A G+T++ L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 108 VLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
+ +I++ + + TP+ A+ + ++A+
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVHGNHVKCVEAL 121
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
+ A + D+++V + G ++ GR LH A+ G L I+E+L+ +G DINA +
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
+ TPL A GH K L+ GA+ +V
Sbjct: 66 KHHITPLLSAVYEGHVSCVKLLLSKGADKTV 96
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 61 MASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSH 120
A NG L V+ + +G D+N + E PLHYA G E+ + L+L GA+I+ + H
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 121 EQTPIDEALSRGKMDII 137
TP+ A+ G + +
Sbjct: 68 HITPLLSAVYEGHVSCV 84
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
+ A + D+++V + G ++ GR LH A+ G L I+E+L+ +G DINA +
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
+ TPL A GH K L+ GA+ +V
Sbjct: 71 KHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 61 MASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSH 120
A NG L V+ + +G D+N + E PLHYA G E+ + L+L GA+I+ + H
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 121 EQTPIDEALSRGKMDII 137
TP+ A+ G + +
Sbjct: 73 HITPLLSAVYEGHVSCV 89
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 52 DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSG 111
+ +G TALH A GH IV++L+ GV++NA++ + TPLH A + +V K LV SG
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 112 ANISVLN-SHEQTPIDEA 128
A + + S QT D+
Sbjct: 127 AAVFAMTYSDMQTAADKC 144
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 62 ASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHE 121
+S G +V+ +I D + N+E T LH A GHTE+ K LV G N++ +S
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 122 QTPIDEALS 130
TP+ A S
Sbjct: 104 WTPLHCAAS 112
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 52 DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSG 111
+ +G TALH A GH IV++L+ GV++NA++ + TPLH A + +V K LV SG
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 112 ANISVLN-SHEQTPIDEA 128
A + + S QT D+
Sbjct: 127 AAVFAMTYSDMQTAADKC 144
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 62 ASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHE 121
+S G +V+ +I D + N+E T LH A GHTE+ K LV G N++ +S
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 122 QTPIDEALS 130
TP+ A S
Sbjct: 104 WTPLHCAAS 112
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G + +KD G T LH+A+ NGHL +V+ L+ G D+NA +
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 86 EEKNTPLHYACLNGHTEVAKKL 107
+ T + NG+ ++A+ L
Sbjct: 70 KFGKTAFDISIDNGNEDLAEIL 91
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 71 VEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALS 130
V L+ G D+ A ++ +TPLH A NGH EV K L+ +GA+++ + +T D ++
Sbjct: 22 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISID 81
Query: 131 RGKMDI 136
G D+
Sbjct: 82 NGNEDL 87
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 16 ETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKD-SQGRTALHMASANGHLGIVEYL 74
E + + + AL A + E V L G +D+ D GR+ L A N L +V+ L
Sbjct: 110 EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169
Query: 75 IGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKM 134
+ G ++NA ++ LH A G + + LV SGA+ S+ N H TP+ A SR +
Sbjct: 170 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI 229
Query: 135 DII 137
DI+
Sbjct: 230 DIL 232
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 52 DSQGRTALHMASANGHLGIVEYLI------GRGVDINASNEEKNTPLHYACLNGHTEVAK 105
D G T LH+A G+L V L+ GR +DI N + TPLH A + V +
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI--YNNLRQTPLHLAVITTLPSVVR 63
Query: 106 KLVLSGANISVLNSHEQT 123
LV +GA+ L+ H QT
Sbjct: 64 LLVTAGASPMALDRHGQT 81
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 84 SNEEKNTPLHYACLNGHTEVAKKLV----LSGANISVLNSHEQTPIDEAL 129
++E+ +TPLH A + G+ +LV G + + N+ QTP+ A+
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV 54
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 49 DSKDSQGRTALHMASANGHLGIVEYLIG-RGVDINASNEEKNTPLHYACLNGHTEVAKKL 107
DS+ +GRTALH A+ + IV+YL+G +G + + +E+ TP+ A G EV L
Sbjct: 273 DSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYL 332
Query: 108 VLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLE 148
+ GA++ +++ + T A + +I+D + + E
Sbjct: 333 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 56 RTALHMASANGHLGIVEYLI--------GRGVDINASNEEKNTPLHYACLNGHTEVAKKL 107
RT LH ++N E LI G D+NA + ++NTPL A L + L
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYL 185
Query: 108 VLSGANISVLNSHEQTPIDEA 128
+GA+ ++ N E++ + +A
Sbjct: 186 XKAGADPTIYNKSERSALHQA 206
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 6 DPSINRT---QTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMA 62
DP NRT SS E + L+ + + +AG +++ D T L +A
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLI-------VHEAKECIAAGADVNAXDCDENTPLXLA 173
Query: 63 SANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN 98
+V YL G D N+ + + LH A N
Sbjct: 174 VLARRRRLVAYLXKAGADPTIYNKSERSALHQAAAN 209
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
L A R + V+ L G D +G + +H+A+ GH IV YLI +G D++ +
Sbjct: 80 LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD 139
Query: 86 EEKNTPLHYACLNGHTEVAKKLVLSGANISVL---NSHEQTPIDEALSRGKMDII 137
+ TPL +A H+ +L+L+ N+SV H+ T + A+ G +I
Sbjct: 140 QNGMTPLMWAAYRTHSVDPTRLLLT-FNVSVNLGDKYHKNTALHWAVLAGNTTVI 193
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
++ A +Y E L AG + D + T LH A+ N + +V+Y I +G ++
Sbjct: 13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG 72
Query: 86 EEKN-TPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
+ N TPLH+A GH + +L+ GA+ S+++ + I A G I+
Sbjct: 73 GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIV 125
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 21 ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQ-GRTALHMASANGHLGIVEYLIGRGV 79
EN+ L AA + I+ V S G +D T LH A+ GHL +V L+ G
Sbjct: 41 ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGA 100
Query: 80 DINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSR 131
D + + E + +H A GHT + L+ G ++ +++ + TP+ A R
Sbjct: 101 DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR 152
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 39 ISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN 98
+ L G + +D+ G + +H A+ G L ++ L+ G D+N + P+H A
Sbjct: 58 LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 117
Query: 99 GHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAIN 141
GHT V L + +++ ++ TP++ AL RG D++D +
Sbjct: 118 GHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQ 159
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 24 DALLAAARYDDIEDVISLASAG-VPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDIN 82
D L AA D+++V L V D+ + G+TAL + G I L+ +G N
Sbjct: 10 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPN 68
Query: 83 ASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
+ +P+H A G + K LV GA+++V + PI A+ G ++
Sbjct: 69 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 123
Score = 32.7 bits (73), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 19/125 (15%)
Query: 1 MEQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALH 60
++Q A P++ Q T +SP + AAR ++ + L G ++ D G +H
Sbjct: 61 LKQGASPNV---QDTSGTSPVH-----DAARTGFLDTLKVLVEHGADVNVPDGTGALPIH 112
Query: 61 MASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSH 120
+A GH +V +L D++ + TPL A G ++ + +L H
Sbjct: 113 LAVQEGHTAVVSFLAAES-DLHRRDARGLTPLELALQRGAQDL----------VDILQGH 161
Query: 121 EQTPI 125
P+
Sbjct: 162 MVAPL 166
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 39 ISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN 98
+ L G + +D+ G + +H A+ G L ++ L+ G D+N + P+H A
Sbjct: 52 LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 111
Query: 99 GHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAIN 141
GHT V L + +++ ++ TP++ AL RG D++D +
Sbjct: 112 GHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 24 DALLAAARYDDIEDVISLASAG-VPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDIN 82
D L AA D+++V L V D+ + G+TAL + G I L+ +G N
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPN 62
Query: 83 ASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
+ +P+H A G + K LV GA+++V + PI A+ G ++
Sbjct: 63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 117
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 1 MEQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALH 60
++Q A P++ Q T +SP + AAR ++ + L G ++ D G +H
Sbjct: 55 LKQGASPNV---QDTSGTSPVH-----DAARTGFLDTLKVLVEHGADVNVPDGTGALPIH 106
Query: 61 MASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNG 99
+A GH +V +L D++ + TPL A G
Sbjct: 107 LAVQEGHTAVVSFLAAES-DLHRRDARGLTPLELALQRG 144
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASN 85
LL AAR ++V L + G + +KD G T LH+A+ NGHL +V+ L+ G D+ A +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 86 EEKNTPLHYACLNGHTEVAKKL 107
+ T + NG+ ++A+ L
Sbjct: 88 KFGKTAFDISIDNGNEDLAEIL 109
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 71 VEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALS 130
V L+ G D+ A ++ +TPLH A NGH EV K L+ +GA++ + +T D ++
Sbjct: 40 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99
Query: 131 RGKMDI 136
G D+
Sbjct: 100 NGNEDL 105
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 57 TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
+ LH A GHL V+ L+ G +N + +TPL AC++G + L+ GA++
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 153
Query: 117 LNSHEQTPIDEALSRGKMDIIDAI 140
S +PI EA RG ++ ++++
Sbjct: 154 -ESDLASPIHEAARRGHVECVNSL 176
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 57 TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
+ +H A+ +GH + LI +G +N + +PLH ACL GH K L+ GA ++
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 117 LNSHEQTPIDEALSRGKMDIIDAI 140
+ + TP+ A G D ++ +
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLL 144
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AAR +E V SL + G +D K S T L++A N V+ L+ G D+N + +
Sbjct: 164 AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQ 222
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPID 126
++PLH E+A L+ GA+ N+ + P++
Sbjct: 223 DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVE 260
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 57 TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANI 114
+ +H A+ GH+ V LI G +I+ TPL+ AC N KKL+ SGA++
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 216
Score = 29.3 bits (64), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 30/58 (51%)
Query: 90 TPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQL 147
+P+H A ++GH + L+ G ++++ + +P+ EA G + + + AQ+
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 118
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 57 TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
+ +H A+ +GH + LI +G +N + +PLH ACL GH K L+ GA ++
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 117 LNSHEQTPIDEALSRGKMDIIDAI 140
+ + TP+ A G D ++ +
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLL 88
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 57 TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
+ LH A GHL V+ L+ G +N + +TPL AC++G + L+ GA++
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 97
Query: 117 LNSHEQTPIDEALSRGKMDIIDAI 140
S +PI EA RG ++ ++++
Sbjct: 98 -ESDLASPIHEAARRGHVECVNSL 120
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AAR +E V SL + G +D K S T L++A N V+ L+ G D+N + +
Sbjct: 108 AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQ 166
Query: 89 NTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPID 126
++PLH E+A L+ GA+ N+ + P++
Sbjct: 167 DSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVE 204
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 57 TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANIS 115
+ +H A+ GH+ V LI G +I+ TPL+ AC N KKL+ SGA+++
Sbjct: 103 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 161
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 30/58 (51%)
Query: 90 TPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQL 147
+P+H A ++GH + L+ G ++++ + +P+ EA G + + + AQ+
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 62
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 49 DSKDSQGRTALHMASANGHLGIVEYLIGRGV--DINASNEEKNTPLHYACLNGHTEVAKK 106
D D G T H+A + G+L +V+ L R + D+N + T LH A EV++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 107 LVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI----NTAVAQLELGGFT 153
L+ +GA++ + + Q P+ A S G + +I+ + +AV + G+T
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 176
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 48 LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKL 107
L+ +QG T LH+A + ++LI G + ++ PLH A G ++ +
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE-- 157
Query: 108 VLSGANISVLNSHEQ---TPIDEALSRGKMD 135
+L G S +N ++ TP+ AL+ G D
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 41 LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD-INASNEEKNTPLHYACLNG 99
L G + KD + LH A++ G L ++E L G G +N +++ TPL +A G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 100 HTEVAKKLV 108
H + A LV
Sbjct: 186 HGDAAVLLV 194
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 49 DSKDSQGRTALHMASANGHLGIVEYLIGRGV--DINASNEEKNTPLHYACLNGHTEVAKK 106
D D G T H+A + G+L +V+ L R + D+N + T LH A EV++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 107 LVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
L+ +GA++ + + Q P+ A S G + +I+ +
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 48 LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKL 107
L+ +QG T LH+A + ++LI G + ++ PLH A G ++ +
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE-- 157
Query: 108 VLSGANISVLNSHEQ---TPIDEALSRGKMD 135
+L G S +N ++ TP+ AL+ G D
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 41 LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD-INASNEEKNTPLHYACLNG 99
L G + KD + LH A++ G L ++E L G G +N +++ TPL +A G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 100 HTEVAKKLV 108
H + A LV
Sbjct: 186 HGDAAVLLV 194
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 49 DSKDSQGRTALHMASANGHLGIVEYLIGRGV--DINASNEEKNTPLHYACLNGHTEVAKK 106
D D G T H+A + G+L +V+ L R + D+N + T LH A EV++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 107 LVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI----NTAVAQLELGGFT 153
L+ +GA++ + + Q P+ A S G + +I+ + +AV + G+T
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 176
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 48 LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKL 107
L+ +QG T LH+A + ++LI G + ++ PLH A G ++ +
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE-- 157
Query: 108 VLSGANISVLNSHEQ---TPIDEALSRGKMD 135
+L G S +N ++ TP+ AL+ G D
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 41 LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD-INASNEEKNTPLHYACLNG 99
L G + KD + LH A++ G L ++E L G G +N +++ TPL +A G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 100 HTEVAKKLV 108
H + A LV
Sbjct: 186 HGDAAVLLV 194
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 35 IEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY 94
+ED+I+ A +++ D+ G+TALH A+A + V L+ + +A +++ TPL
Sbjct: 134 VEDLIT---ADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFL 190
Query: 95 ACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
A G E +K L+ + AN + + ++ P D A R DI+
Sbjct: 191 AAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIV 233
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 39 ISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN 98
I L + L+++ G T L +A+ G+VE LI DINA++ T LH+A
Sbjct: 102 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAV 161
Query: 99 GHTEVAKKLVLSGANISVLNSHEQTPI 125
+TE L++ AN + ++TP+
Sbjct: 162 NNTEAVNILLMHHANRDAQDDKDETPL 188
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 25/140 (17%)
Query: 17 TSSPENIDALLAAARYDDIEDVI------------SLASAGV-------P-----LDSKD 52
T+ PE +ALL A ++ D LAS GV P L + +
Sbjct: 52 TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 111
Query: 53 SQGRTALHMASANGHLGIVEYLIGRGVDINASNE-EKNTPLHYACLNGHTEVAKKLVLSG 111
G T LH+AS +G+LGIVE L+ G D+NA T LH A + ++ L+ G
Sbjct: 112 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 171
Query: 112 ANISVLNSHEQTPIDEALSR 131
A+++ + +P R
Sbjct: 172 ADVNRVTYQGYSPYQLTWGR 191
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 48 LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNG 99
L+ +++ +T LH+A I E L+G G D + NTPLH AC G
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG 86
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 81 INASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKM 134
+N N + TPLH A + E+A+ L+ +G + + + TP+ A +G +
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCL 88
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 41 LASAGVPLDSKD-SQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNG 99
L S G +++++ GRTALH+A + +V L+ G D+N + +P
Sbjct: 133 LVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRP 192
Query: 100 HTEVAKKL 107
T + ++L
Sbjct: 193 STRIQQQL 200
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%)
Query: 21 ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD 80
E L+ AA + I V L G +AL +A + G+ IV+ L+ GVD
Sbjct: 51 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD 110
Query: 81 INASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
+N + TPL YA H + K L+ SGA+ ++ +D A++ G + I
Sbjct: 111 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 170
Query: 141 NTAVAQL 147
+ + +L
Sbjct: 171 ESHLLKL 177
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 54 QGRTAL--HMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSG 111
QG +L H +A G + + I + IN ++EE TPL +A +G V + L+ +G
Sbjct: 16 QGANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG 75
Query: 112 ANISVLNSHEQTPIDEALSRGKMDIIDAI 140
A+ +L ++ + A S+G DI+ +
Sbjct: 76 ADPQLLGKGRESALSLACSKGYTDIVKML 104
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 17 TSSPENIDALLAAARYDDIEDVI------------SLASAGV-------P-----LDSKD 52
T+ PE +ALL A ++ D LAS GV P L + +
Sbjct: 55 TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 114
Query: 53 SQGRTALHMASANGHLGIVEYLIGRGVDINASNE-EKNTPLHYACLNGHTEVAKKLVLSG 111
G T LH+AS +G+LGIVE L+ G D+NA T LH A + ++ L+ G
Sbjct: 115 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 174
Query: 112 ANISVLNSHEQTPIDEALSRGKMDI 136
A+++ + +P R I
Sbjct: 175 ADVNRVTYQGYSPYQLTWGRPSTRI 199
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 48 LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNG 99
L+ +++ +T LH+A I E L+G G D + NTPLH AC G
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG 89
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 81 INASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKM 134
+N N + TPLH A + E+A+ L+ +G + + + TP+ A +G +
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCL 91
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 41 LASAGVPLDSKD-SQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNG 99
L S G +++++ GRTALH+A + +V L+ G D+N + +P
Sbjct: 136 LVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRP 195
Query: 100 HTEVAKKL-VLSGANISVLNSHE 121
T + ++L L+ N+ +L E
Sbjct: 196 STRIQQQLGQLTLENLQMLPESE 218
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%)
Query: 21 ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD 80
E L+ AA + I V L G +AL +A + G+ IV+ L+ GVD
Sbjct: 35 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD 94
Query: 81 INASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
+N + TPL YA H + K L+ SGA+ ++ +D A++ G + I
Sbjct: 95 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154
Query: 141 NTAVAQL 147
+ + +L
Sbjct: 155 ESHLLKL 161
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 58 ALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVL 117
++H +A G + + I + IN ++EE TPL +A +G V + L+ +GA+ +L
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 118 NSHEQTPIDEALSRGKMDIIDAI 140
++ + A S+G DI+ +
Sbjct: 66 GKGRESALSLACSKGYTDIVKML 88
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 23 IDALLAAARYDDIEDVIS-LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDI 81
+ ALL AA D + V L +D D++G T L++A N + I + LI RG DI
Sbjct: 6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65
Query: 82 NASNEEKNTPLHYACLNGHTEV 103
N N ++P YA G TE+
Sbjct: 66 NLQNSISDSPYLYAGAQGRTEI 87
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 87 EKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
E NTPL+ A N E+AK L+ GA+I++ NS +P A ++G+ +I+
Sbjct: 38 EGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEIL 88
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 24 DALLAAARYDDIEDVISLASAGVP-LDSKDSQGRTALHMASA-----NGHLGIVEYLIGR 77
+AL+ AA I++V L G +D ++ G TAL A + IV+ L+
Sbjct: 108 NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN 167
Query: 78 GVDINASNEEKNTPLHYACLNGHTEVAKKL 107
G D + + T + YA G+TE++K L
Sbjct: 168 GADQSIKDNSGRTAMDYANQKGYTEISKIL 197
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%)
Query: 21 ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD 80
E L+ AA + I V L G +AL +A + G+ IV+ L+ GVD
Sbjct: 33 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD 92
Query: 81 INASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAI 140
+N + TPL YA H + K L+ SGA+ ++ +D A++ G + I
Sbjct: 93 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 152
Query: 141 NTAVAQL 147
+ + +L
Sbjct: 153 ESHLLKL 159
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 58 ALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVL 117
++H +A G + + I + IN ++EE TPL +A +G V + L+ +GA+ +L
Sbjct: 4 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 63
Query: 118 NSHEQTPIDEALSRGKMDIIDAI 140
++ + A S+G DI+ +
Sbjct: 64 GKGRESALSLACSKGYTDIVKML 86
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 46 VPLDSKDSQGRTALHMASANGHLGIVEYLIGR-GVDINASNEEKNTPLHYACLNGHTEVA 104
V ++ D G TAL+ A GH IVE L + +++N N+ +T LH A G+ ++
Sbjct: 97 VGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIV 156
Query: 105 KKLVLSGANISVLNSHEQTPIDEA 128
+ L+ GA + N ++ D A
Sbjct: 157 QLLLAKGARTDLRNIEKKLAFDXA 180
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 59 LHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISV-- 116
LH A+ G+L + + V +N ++ +T L++AC GH ++ + L + NI +
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXL-FTQPNIELNQ 135
Query: 117 LNSHEQTPIDEALSRGKMDIIDAINTAVAQLEL 149
N T + A +G DI+ + A+ +L
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 22 NIDALLAAARYDDIEDVISLASAGV------PLDSKDSQGRTALHMASAN---GHLGIVE 72
+ +L A + DI ++ + GV PL + TALH+A + L IV+
Sbjct: 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVD 189
Query: 73 YLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA 128
+L+ +++ + +T LHY CL + E K L+ A+I + N +TP+D A
Sbjct: 190 FLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 245
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 57 TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
T L A+A L E+L+ G ++N ++ PLH+A + GHT +A + GA++
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 117 LNSHEQTPIDEALSRGKMDIIDAINTA 143
+S + P+ A+ DI+ + A
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLLRLA 323
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%)
Query: 21 ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD 80
+N L+ A + + L G ++ DS GR LH A+ GH G+ + RG D
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 81 INASNEEKNTPLHYACLNGHTEVAKKLVLS 110
+ A + E PL A + ++ L L+
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLRLA 323
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 57 TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
T L A+A L E+L+ G ++N ++ PLH+A + GHT +A + GA++
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 117 LNSHEQTPIDEALSRGKMDIIDAINTA 143
+S + P+ A+ DI+ + A
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLLRLA 323
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 45 GVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVA 104
G ++ DS GR LH A+ GH G+ + RG D+ A + E PL A + ++
Sbjct: 258 GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317
Query: 105 KKLVLS 110
L L+
Sbjct: 318 TLLRLA 323
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 57 TALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISV 116
T L A+A L E+L+ G ++N ++ PLH+A + GHT +A + GA++
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 117 LNSHEQTPIDEALSRGKMDIIDAINTA 143
+S + P+ A+ DI+ + A
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLLRLA 323
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%)
Query: 21 ENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVD 80
+N L+ A + + L G ++ DS GR LH A+ GH G+ + RG D
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 81 INASNEEKNTPLHYA 95
+ A + E PL A
Sbjct: 294 LGARDSEGRDPLTIA 308
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 39 ISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN 98
+ L G + +D+ G + +H A+ G L ++ L+ G D+NA + + P+H A
Sbjct: 58 LELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIRE 117
Query: 99 GHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAIN 141
GH+ V L +++ ++ TP++ A RG +++D +
Sbjct: 118 GHSSVVSFLA-PESDLHHRDASGLTPLELARQRGAQNLMDILQ 159
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 1 MEQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALH 60
++Q A P++ Q +SP + AAR ++ + L G +++ DS G +H
Sbjct: 61 LKQGASPNV---QDASGTSPVH-----DAARTGFLDTLKVLVEHGADVNALDSTGSLPIH 112
Query: 61 MASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNG 99
+A GH +V +L D++ + TPL A G
Sbjct: 113 LAIREGHSSVVSFLAPES-DLHHRDASGLTPLELARQRG 150
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 39 ISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN 98
+ L G + +D+ G + +H A+ G L ++ L+ G D+NA + + P+H A
Sbjct: 60 LELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIRE 119
Query: 99 GHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAIN 141
GH+ V L +++ ++ TP++ A RG +++D +
Sbjct: 120 GHSSVVSFLA-PESDLHHRDASGLTPLELARQRGAQNLMDILQ 161
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 1 MEQDADPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALH 60
++Q A P++ Q +SP + AAR ++ + L G +++ DS G +H
Sbjct: 63 LKQGASPNV---QDASGTSPVH-----DAARTGFLDTLKVLVEHGADVNALDSTGSLPIH 114
Query: 61 MASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNG 99
+A GH +V +L D++ + TPL A G
Sbjct: 115 LAIREGHSSVVSFLAPES-DLHHRDASGLTPLELARQRG 152
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 49 DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV 108
D KD G +H A+ G L ++ L+ D+N + E N PLH A GH V + LV
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 109 L-SGANISVLNSHEQTPIDEALSRGKMDII 137
+ +N+ N T D A G+ +++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 5 ADPSINRTQTTETSSPENID-----ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTAL 59
+P I R ++P+ D + AAR ++ + +L ++ +D++G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
Query: 60 HMASANGHLGIVEYLIGR-GVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGA 112
H+A+ GHL +VE+L+ ++ N + +T A L G EV + +GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 49 DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV 108
D KD G +H A+ G L ++ L+ D+N + E N PLH A GH V + LV
Sbjct: 64 DLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 109 L-SGANISVLNSHEQTPIDEALSRGKMDII 137
+ +N+ N T D A G+ +++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 5 ADPSINRTQTTETSSPENID-----ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTAL 59
+P I R ++P+ D + AAR ++ + +L ++ +D++G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 60 HMASANGHLGIVEYLIGR-GVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGA 112
H+A+ GHL +VE+L+ ++ N + +T A L G EV + +GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 49 DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV 108
D KD G +H A+ G L ++ L+ D+N + E N PLH A GH V + LV
Sbjct: 64 DLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 109 L-SGANISVLNSHEQTPIDEALSRGKMDII 137
+ +N+ N T D A G+ +++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 5 ADPSINRTQTTETSSPENID-----ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTAL 59
+P I R ++P+ D + AAR ++ + +L ++ +D++G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 60 HMASANGHLGIVEYLIGR-GVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGA 112
H+A+ GHL +VE+L+ ++ N + +T A L G EV + +GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 49 DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV 108
D KD G +H A+ G L ++ L+ D+N + E N PLH A GH V + LV
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 109 L-SGANISVLNSHEQTPIDEALSRGKMDII 137
+ +N+ N T D A G+ +++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 6 DPSINRTQTTETSSPENID-----ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALH 60
+P I R ++P+ D + AAR ++ + +L ++ +D++G LH
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLH 108
Query: 61 MASANGHLGIVEYLIGR-GVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGA 112
+A+ GHL +VE+L+ ++ N + +T A L G EV + +GA
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 49 DSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV 108
D KD G +H A+ G L ++ L+ D+N + E N PLH A GH V + LV
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 109 L-SGANISVLNSHEQTPIDEALSRGKMDII 137
+ +N+ N T D A G+ +++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 5 ADPSINRTQTTETSSPENID-----ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTAL 59
+P I R ++P+ D + AAR ++ + +L ++ +D++G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 60 HMASANGHLGIVEYLIGR-GVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGA 112
H+A+ GHL +VE+L+ ++ N + +T A L G EV + +GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 18/108 (16%)
Query: 25 ALLAAARYDDIEDVISLASAGV-----PLDSKDSQGRTALHMASANGHLGIVEYLIGRGV 79
AL AA YD++E + L A P+ S+ +G+TALH+A N ++ +V L+ RG
Sbjct: 40 ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGA 99
Query: 80 DINASN-------------EEKNTPLHYACLNGHTEVAKKLVLSGANI 114
++A PL +A G E+ + L+ GA+I
Sbjct: 100 SVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI 147
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 52 DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSG 111
+ +G TALH A + IV++LI G ++N+ + TPLH A T + LV G
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110
Query: 112 ANI 114
A I
Sbjct: 111 AAI 113
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 62 ASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHE 121
A+ G L +V+ + D + NEE T LH A + + L+ +GAN++ +SH
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 122 QTPIDEALS 130
TP+ A S
Sbjct: 88 WTPLHCAAS 96
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 21 ENIDAL---LAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGR 77
E I AL + A Y ++ +I+ AG ++S DS G T LH A++ I L+
Sbjct: 53 EGITALHNAICGANYSIVDFLIT---AGANVNSPDSHGWTPLHCAASCNDTVICMALVQH 109
Query: 78 GVDINAS 84
G I A+
Sbjct: 110 GAAIFAT 116
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 52 DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSG 111
D + +H+A+ G V LI GV N T LH AC G + AK L G
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Query: 112 ANISVLNSHEQTPIDEALSRGKMDIIDAI 140
S+ H Q PI A+ K D++ A+
Sbjct: 77 EVHSLW--HGQKPIHLAVXANKTDLVVAL 103
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 7 PSINRTQTTETSSPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANG 66
P +NR ++ + EN + + AAR ++V L GV ++ G TALH+A G
Sbjct: 9 PKLNRIKSDD----ENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64
Query: 67 HLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV 108
+ +YL G + + +K P+H A T++ LV
Sbjct: 65 CVDTAKYLASVGEVHSLWHGQK--PIHLAVXANKTDLVVALV 104
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 48 LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKL 107
LD + QG + LH A + + G+D+N + E PL+ + + K+L
Sbjct: 204 LDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAXVLLTKEL 263
Query: 108 V 108
+
Sbjct: 264 L 264
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 35 IEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY 94
+ED+I+ + +++ D G++ALH A+A ++ L+ G + + N ++ TPL
Sbjct: 105 LEDLIN---SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFL 161
Query: 95 ACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
A G E AK L+ AN + + ++ P D A R DI+
Sbjct: 162 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV 204
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%)
Query: 39 ISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLN 98
I L + LD++ G T L +A+ G++E LI D+NA ++ + LH+A
Sbjct: 73 ILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAV 132
Query: 99 GHTEVAKKLVLSGANISVLNSHEQTPI 125
+ + A L+ +GAN + N+ E+TP+
Sbjct: 133 NNVDAAVVLLKNGANKDMQNNKEETPL 159
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 25 ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLI-GRGVDINA 83
AL AARY + L A +D+ GRT LH A + G+ + L+ R D++A
Sbjct: 25 ALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDA 84
Query: 84 SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSH 120
+ TPL +A +L L G ++NSH
Sbjct: 85 RMHDGTTPL---------ILAARLALEGMLEDLINSH 112
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 70 IVEYLIGRGVDI-NASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA 128
++ I +G + N ++ T LH A ++ AK+L+ + A+ + ++ +TP+ A
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
Query: 129 LS 130
+S
Sbjct: 63 VS 64
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 35 IEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY 94
+ED+I+ + +++ D G++ALH A+A ++ L+ G + + N ++ TPL
Sbjct: 31 LEDLIN---SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFL 87
Query: 95 ACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
A G E AK L+ AN + + ++ P D A R DI+
Sbjct: 88 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV 130
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 41 LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGH 100
L + LD++ G T L +A+ G++E LI D+NA ++ + LH+A +
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 101 TEVAKKLVLSGANISVLNSHEQTPI 125
+ A L+ +GAN + N+ E+TP+
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPL 85
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 35 IEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY 94
+ED+I+ + +++ D G++ALH A+A ++ L+ G + + N + TPL
Sbjct: 108 LEDLIN---SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 164
Query: 95 ACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
A G E AK L+ AN + + ++ P D A R DI+
Sbjct: 165 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV 207
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 48 LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKL 107
LD++ G T L +A+ G++E LI D+NA ++ + LH+A + + A L
Sbjct: 85 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 144
Query: 108 VLSGANISVLNSHEQTPI 125
+ +GAN + N+ E+TP+
Sbjct: 145 LKNGANKDMQNNREETPL 162
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 25 ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLI-GRGVDINA 83
AL AARY + L A + +D+ GRT LH A + G+ + LI R D++A
Sbjct: 28 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 87
Query: 84 SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSH 120
+ TPL +A +L + G ++NSH
Sbjct: 88 RMHDGTTPL---------ILAARLAVEGMLEDLINSH 115
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 69 GIVEYLIGRGVDI-NASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDE 127
++ I +G + N ++ T LH A ++ AK+L+ + A+ ++ ++ +TP+
Sbjct: 5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 64
Query: 128 ALS 130
A+S
Sbjct: 65 AVS 67
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 52 DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYAC 96
D G TALH+A+ + L+ D N + TPLH A
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 66
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 35 IEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY 94
+ED+I+ + +++ D G++ALH A+A ++ L+ G + + N + TPL
Sbjct: 140 LEDLIN---SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 196
Query: 95 ACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
A G E AK L+ AN + + ++ P D A R DI+
Sbjct: 197 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV 239
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 48 LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKL 107
LD++ G T L +A+ G++E LI D+NA ++ + LH+A + + A L
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 108 VLSGANISVLNSHEQTPI 125
+ +GAN + N+ E+TP+
Sbjct: 177 LKNGANKDMQNNREETPL 194
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 25 ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLI-GRGVDINA 83
AL AA Y + L A + +D+ GRT LH A + G+ + LI R D++A
Sbjct: 60 ALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 84 SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSH 120
+ TPL +A +L + G ++NSH
Sbjct: 120 RMHDGTTPL---------ILAARLAVEGMLEDLINSH 147
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 52 DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYAC 96
D G TALH+A+A + L+ D N + TPLH A
Sbjct: 54 DRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 70 IVEYLIGRGVDI-NASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA 128
++ I +G + N ++ T LH A ++ AK+L+ + A+ ++ ++ +TP+ A
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Query: 129 LS 130
+S
Sbjct: 98 VS 99
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 35 IEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY 94
+ED+I+ + +++ D G++ALH A+A ++ L+ G + + N + TPL
Sbjct: 140 LEDLIN---SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 196
Query: 95 ACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
A G E AK L+ AN + + ++ P D A R DI+
Sbjct: 197 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV 239
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 48 LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKL 107
LD++ G T L +A+ G++E LI D+NA ++ + LH+A + + A L
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 108 VLSGANISVLNSHEQTPI 125
+ +GAN + N+ E+TP+
Sbjct: 177 LKNGANKDMQNNREETPL 194
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 25 ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLI-GRGVDINA 83
AL AARY + L A + +D+ GRT LH A + G+ + LI R D++A
Sbjct: 60 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 84 SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSH 120
+ TPL +A +L + G ++NSH
Sbjct: 120 RMHDGTTPL---------ILAARLAVEGMLEDLINSH 147
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 52 DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYAC 96
D G TALH+A+ + L+ D N + TPLH A
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 70 IVEYLIGRGVDI-NASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA 128
++ I +G + N ++ T LH A ++ AK+L+ + A+ ++ ++ +TP+ A
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Query: 129 LS 130
+S
Sbjct: 98 VS 99
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 35 IEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHY 94
+ED+I+ + +++ D G++ALH A+A ++ L+ G + + N + TPL
Sbjct: 141 LEDLIN---SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 197
Query: 95 ACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDII 137
A G E AK L+ AN + + ++ P D A R DI+
Sbjct: 198 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV 240
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 48 LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKL 107
LD++ G T L +A+ G++E LI D+NA ++ + LH+A + + A L
Sbjct: 118 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 177
Query: 108 VLSGANISVLNSHEQTPI 125
+ +GAN + N+ E+TP+
Sbjct: 178 LKNGANKDMQNNREETPL 195
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 25 ALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLI-GRGVDINA 83
AL AARY + L A + +D+ GRT LH A + G+ + LI R D++A
Sbjct: 61 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 120
Query: 84 SNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSH 120
+ TPL +A +L + G ++NSH
Sbjct: 121 RMHDGTTPL---------ILAARLAVEGMLEDLINSH 148
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 70 IVEYLIGRGVDI-NASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEA 128
++ I +G + N ++ T LH A ++ AK+L+ + A+ ++ ++ +TP+ A
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 98
Query: 129 LS 130
+S
Sbjct: 99 VS 100
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 52 DSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYAC 96
D G TALH+A+ + L+ D N + TPLH A
Sbjct: 55 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 99
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 45 GVPLDSKDSQG--RTALHMA---SANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNG 99
G PL D+Q LH+A + L +V+++I G ++A + NT LHYA L
Sbjct: 159 GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYN 218
Query: 100 HTEVAKKLVLSGANISVLNSHEQTPIDEALSR 131
+ K L+ A + +N +T +D A +
Sbjct: 219 QPDCLKLLLKGRALVGTVNEAGETALDIARKK 250
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 45 GVPLDSKDSQG--RTALHMA---SANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNG 99
G PL D+Q LH+A + L +V+++I G ++A + NT LHYA L
Sbjct: 178 GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYN 237
Query: 100 HTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA 145
+ K L+ A + +N +T +D A + + + + A A
Sbjct: 238 QPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA 283
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 41 LASAGVPLDSKDSQG-RTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYA 95
LA AG LD +D +G TALHMA+ +VE L+ G DI +E T L A
Sbjct: 95 LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 48 LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKN-TPLHYACLNGHTEVAKK 106
+D+ D GRTAL + G V L G D++ + T LH A EV +
Sbjct: 69 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128
Query: 107 LVLSGANISVLNSHEQTPIDEA 128
LV GA+I V + T ++ A
Sbjct: 129 LVELGADIEVEDERGLTALELA 150
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
Query: 24 DALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALH---MASANGHLGIVEYLIGRGVD 80
D L AA +E+V +L AG ++ +S GR + M SA + E L+ G +
Sbjct: 14 DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSAR----VAELLLLHGAE 69
Query: 81 INASNEEKNT-PLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDA 139
N ++ T P+H A G + L +GA + V ++ + P+D A G D+
Sbjct: 70 PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 129
Query: 140 INTA 143
+ A
Sbjct: 130 LRAA 133
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AAR ++ ++ L AG LD +D+ GR + +A GH + YL SN +
Sbjct: 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHAR 144
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
Query: 24 DALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALH---MASANGHLGIVEYLIGRGVD 80
D L AA +E+V +L AG ++ +S GR + M SA + E L+ G +
Sbjct: 14 DWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMMGSAR----VAELLLLHGAE 69
Query: 81 INASNEEKNT-PLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDA 139
N ++ T P+H A G + L +GA + V ++ + P+D A G D+
Sbjct: 70 PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 129
Query: 140 INTA 143
+ A
Sbjct: 130 LRAA 133
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 29 AARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEK 88
AAR ++ ++ L AG LD +D+ GR + +A GH + YL SN +
Sbjct: 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHAR 144
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 41 LASAGVPLDSKDSQG-RTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYA 95
LA AG LD +D +G TALHMA+ +VE L+ G DI +E T L A
Sbjct: 96 LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 48 LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKN-TPLHYACLNGHTEVAKK 106
+D+ D GRTAL + G V L G D++ + T LH A EV +
Sbjct: 70 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129
Query: 107 LVLSGANISVLNSHEQTPID 126
LV GA+I V + T ++
Sbjct: 130 LVELGADIEVEDERGLTALE 149
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQG-RTALHMASANGHLGIVEYLIGRGVDINAS 84
L+ A + +D++ V L G ++ ++ +G T LH A IVE L+ G D
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 85 NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKM 134
+ TP A + G ++ K + GA+++ + + T EA GK+
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 118
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 25 ALLAAARYDDIEDV-ISLASAGVPLDSKDSQGRTAL---HMASANGHL-GIVEYLIGRGV 79
AL+ AA +E + I L G +++ D+ GR AL ++S + + I L+ G
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210
Query: 80 DINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDA 139
D+N E TPL A H + ++L+ E I++ S GK ++ A
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLL----------EQEHIEINDTDSDGKTALLLA 260
Query: 140 INTAVAQL 147
+ + ++
Sbjct: 261 VELKLKKI 268
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 45 GVPLDSKDSQGRTALHMASANGHLGIVEYLIGR-GVDINASNEEKNTPLHYACLNGHTEV 103
G ++ + +G+T L +A HLG+V+ L+ + ++IN ++ + T L A ++
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 268
Query: 104 AKKLVLSGAN 113
A+ L GA+
Sbjct: 269 AELLCKRGAS 278
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQG-RTALHMASANGHLGIVEYLIGRGVDINAS 84
L+ A + +D++ V L G ++ ++ +G T LH A IVE L+ G D
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 88
Query: 85 NEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKM 134
+ TP A + G ++ K + GA+++ + + T EA GK+
Sbjct: 89 KKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 138
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 25 ALLAAARYDDIEDV-ISLASAGVPLDSKDSQGRTAL-H--MASANGHL-GIVEYLIGRGV 79
AL+ AA +E + I L G +++ D+ GR AL H ++S + + I L+ G
Sbjct: 171 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 230
Query: 80 DINASNEEKNTPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDA 139
D+N E TPL A H + ++L+ E I++ S GK ++ A
Sbjct: 231 DVNVRGERGKTPLILAVEKKHLGLVQRLL----------EQEHIEINDTDSDGKTALLLA 280
Query: 140 INTAVAQL 147
+ + ++
Sbjct: 281 VELKLKKI 288
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 41 LASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGR-GVDINASNEEKNTPLHYACLNG 99
L G ++ + +G+T L +A HLG+V+ L+ + ++IN ++ + T L A
Sbjct: 225 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 284
Query: 100 HTEVAKKLVLSGAN 113
++A+ L GA+
Sbjct: 285 LKKIAELLCKRGAS 298
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 26 LLAAARYDDIEDVISLASAGVPLDSKDSQGRTALH---MASANGHLGIVEYLIGRGVDIN 82
L AA +E V L AG ++ + GR + M SA + E L+ G + N
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQ----VAELLLLHGAEPN 71
Query: 83 ASNEEKNT-PLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAIN 141
++ T P+H A G + L +GA + V ++ + P+D A +G DI ++
Sbjct: 72 CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLH 131
Query: 142 TA 143
A
Sbjct: 132 AA 133
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 48 LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYAC-LNGHT 101
LD ++ G+TALH+A+ G VE L G + + +T LH AC + HT
Sbjct: 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHT 92
Score = 33.1 bits (74), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 55 GRTALHMASANGHLGIVEYLIGRGVD---INASNEEKNTPLHYACLNGHTEVAKKLVLSG 111
G TALH+A + H +++L+G ++ N+ T LH A + G +KL +G
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68
Query: 112 ANISV 116
A + V
Sbjct: 69 AGVLV 73
Score = 32.7 bits (73), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 21 ENIDA---LLAAARYDDIEDVISLASAGVPLDSKD-SQGRTALHMASANGHLGIVEYLIG 76
EN D L A + D E V L AG L+ + + GRT LH+A ++E L+
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 77 RGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGA 112
G D A TPL A L + +A+ L GA
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 48 LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEE-KNTPLHYACLNGHTEVAKK 106
L++++ G T LH+A + +V L G D+N TPLH A V +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 107 LVLSGANISVLNSHEQTPIDEALSR 131
L+ +GA+ + +TP+ AL R
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLR 235
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 48 LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYAC-LNGHT 101
LD ++ G+TALH+A+ G VE L G + + +T LH AC + HT
Sbjct: 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHT 92
Score = 33.1 bits (74), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 55 GRTALHMASANGHLGIVEYLIGRGVD---INASNEEKNTPLHYACLNGHTEVAKKLVLSG 111
G TALH+A + H +++L+G ++ N+ T LH A + G +KL +G
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68
Query: 112 ANISV 116
A + V
Sbjct: 69 AGVLV 73
Score = 32.7 bits (73), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 21 ENIDA---LLAAARYDDIEDVISLASAGVPLDSKD-SQGRTALHMASANGHLGIVEYLIG 76
EN D L A + D E V L AG L+ + + GRT LH+A ++E L+
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 77 RGVDINASNEEKNTPLHYACLNGHTEVAKKLVLSGA 112
G D A TPL A L + +A+ L GA
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 48 LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEE-KNTPLHYACLNGHTEVAKK 106
L++++ G T LH+A + +V L G D+N TPLH A V +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 107 LVLSGANISVLNSHEQTPIDEALSR 131
L+ +GA+ + +TP+ AL R
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLR 235
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 48 LDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYA 95
L+++DS G T L++A+ G++ IV+ L+ G D +N+ P+ +
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 85 NEEKNTPLHYACLNGHTEVAKKLVLSGAN 113
+E NTPLH+ + E+ K LV G+N
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSN 156
>pdb|3U5E|O Chain O, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|O Chain O, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
Length = 217
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 101 TEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA 145
T +AK+LVL+G I V+ + E I R K+ D + A A
Sbjct: 26 TVIAKQLVLNGQKIVVVRAEEALNISGEFFRNKLKYHDFLRKATA 70
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 77 RGVDINASNEEKNTPL-HYACLN--GHTEVAKKLVLSGANI 114
RG+ IN S+ E +TP HYA ++ GH + K ++ A +
Sbjct: 59 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQM 99
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 77 RGVDINASNEEKNTPL-HYACLN--GHTEVAKKLVLSGANI 114
RG+ IN S+ E +TP HYA ++ GH + K ++ A +
Sbjct: 58 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQM 98
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 77 RGVDINASNEEKNTPL-HYACLN--GHTEVAKKLVLSGANI 114
RG+ IN S+ E +TP HYA ++ GH + K ++ A +
Sbjct: 58 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQM 98
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 77 RGVDINASNEEKNTPL-HYACLN--GHTEVAKKLVLSGANI 114
RG+ IN S+ E +TP HYA ++ GH + K ++ A +
Sbjct: 59 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQM 99
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 77 RGVDINASNEEKNTPL-HYACLN--GHTEVAKKLVLSGANI 114
RG+ IN S+ E +TP HYA ++ GH + K ++ A +
Sbjct: 50 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQM 90
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 59 LHMASANGHLGIVEYLIGRGVDINASNEEKNTPLHYACLNGHTEVAKKLV 108
LH A+ IV+ L+ G+D + +++ NT L+YA +G+ + K V
Sbjct: 66 LHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFV 115
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 77 RGVDINASNEEKNTPL-HYACLN--GHTEVAKKLVLSGANI 114
RG+ IN S+ E +TP HYA ++ GH + K ++ A +
Sbjct: 58 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQM 98
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 77 RGVDINASNEEKNTPL-HYACLN--GHTEVAKKLVLSGANI 114
RG+ IN S+ E +TP HYA ++ GH + K ++ A +
Sbjct: 44 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQM 84
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 11 RTQTTETSSPENIDALLAAARYDDIEDVISLA 42
+ Q TE +N+D LLA ARY I ++++L
Sbjct: 226 KLQETE----QNLDVLLADARYQKIHEIVTLV 253
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 77 RGVDINASNEEKNTPL-HYACLN--GHTEVAKKLVLSGANI 114
RG+ IN S+ E +TP HYA ++ GH + K ++ A +
Sbjct: 343 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQM 383
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 19 SPENIDALLAAARYDDIEDVISLASA 44
SPEN+D +LA A + ++D+I+ A
Sbjct: 87 SPENVDDVLAVATFLQMQDIITACHA 112
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 19 SPENIDALLAAARYDDIEDVISLASA 44
SPEN+D +LA A + ++D+I+ A
Sbjct: 89 SPENVDDVLAVATFLQMQDIITACHA 114
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 27.7 bits (60), Expect = 2.7, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 76 GRGVDINASNEEKNTPL-HYACLN--GHTEVAKKLVLSGANI 114
RG+ IN S+ E +TP HYA ++ GH + K ++ A +
Sbjct: 342 ARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQM 383
>pdb|1NHJ|A Chain A, Crystal Structure Of N-Terminal 40kd MutlA100P MUTANT
PROTEIN COMPLEX With Adpnp And One Sodium
Length = 333
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 20/126 (15%)
Query: 30 ARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKN 89
A DD+E +ISL G L S S R L +A Y GR D+N + +
Sbjct: 83 ASLDDLEAIISLGFRGEALPSISSVSRLTLTSRTAEQQEAWQAYAEGR--DMNVTVKPAA 140
Query: 90 TPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLEL 149
P+ G + VL+ TP R + + I+ + ++ L
Sbjct: 141 HPV------------------GTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 182
Query: 150 GGFTVS 155
F V+
Sbjct: 183 ARFDVT 188
>pdb|1B62|A Chain A, Mutl Complexed With Adp
Length = 355
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 20/126 (15%)
Query: 30 ARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKN 89
A DD+E +ISL G L S S R L +A Y GR D+N + +
Sbjct: 87 ASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGR--DMNVTVKPAA 144
Query: 90 TPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLEL 149
P+ G + VL+ TP R + + I+ + ++ L
Sbjct: 145 HPV------------------GTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 186
Query: 150 GGFTVS 155
F V+
Sbjct: 187 ARFDVT 192
>pdb|1BKN|A Chain A, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
pdb|1BKN|B Chain B, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
Length = 352
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 20/126 (15%)
Query: 30 ARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKN 89
A DD+E +ISL G L S S R L +A Y GR D+N + +
Sbjct: 84 ASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGR--DMNVTVKPAA 141
Query: 90 TPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLEL 149
P+ G + VL+ TP R + + I+ + ++ L
Sbjct: 142 HPV------------------GTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 183
Query: 150 GGFTVS 155
F V+
Sbjct: 184 ARFDVT 189
>pdb|1B63|A Chain A, Mutl Complexed With Adpnp
pdb|1NHH|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl Protein (Ln40)
Complex With Adpnp And One Rubidium
pdb|1NHI|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl (Ln40) Complex
With Adpnp And One Potassium
Length = 333
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 20/126 (15%)
Query: 30 ARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKN 89
A DD+E +ISL G L S S R L +A Y GR D+N + +
Sbjct: 83 ASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGR--DMNVTVKPAA 140
Query: 90 TPLHYACLNGHTEVAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVAQLEL 149
P+ G + VL+ TP R + + I+ + ++ L
Sbjct: 141 HPV------------------GTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 182
Query: 150 GGFTVS 155
F V+
Sbjct: 183 ARFDVT 188
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 6 DPSINRTQTTETSSPENIDALLAAARYDDIEDVISLASA--------GVPLDSKDSQGRT 57
D T +T P+ + L +A R D I ++ +A P +G+T
Sbjct: 37 DEEFREPSTGKTCLPKALLNL-SAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQT 95
Query: 58 ALHMASANGHLGIVEYLIGRGVDINAS 84
ALH+A VE L+ +G D++A
Sbjct: 96 ALHIAIERRCKHYVELLVEKGADVHAQ 122
>pdb|4B6A|O Chain O, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 217
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 103 VAKKLVLSGANISVLNSHEQTPIDEALSRGKMDIIDAINTAVA 145
VAK+LVL+G I V+ + + I R K+ D + A A
Sbjct: 28 VAKQLVLNGQKIVVVRAEAELNISGEFFRNKLKYHDFLRKATA 70
>pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 1210
Score = 26.9 bits (58), Expect = 5.0, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 24 DALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALH 60
D L+A ED+I +A +PLD ++ RT LH
Sbjct: 885 DGLIAPGTRVSGEDIIIGKTAPIPLDHEELGQRTQLH 921
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 47 PLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINAS 84
P +G+TALH+A VE L+ +G D++A
Sbjct: 83 PFRDIYYRGQTALHIAIERRCKHYVELLVAQGADVHAQ 120
>pdb|3FGE|A Chain A, Crystal Structure Of Putative Flavin Reductase With
Split Barrel Domain (Yp_750721.1) From Shewanella
Frigidimarina Ncimb 400 At 1.74 A Resolution
Length = 203
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 19 SPENIDALLAAARYDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLG 69
S E+I+AL R I + SA + + ++D QG T L + S+ HLG
Sbjct: 5 SKEHINALETRTRAHFINSLSGFKSANL-IGTQDRQGNTNLSIVSSVIHLG 54
>pdb|2IKF|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Utp
pdb|2IKF|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Utp
pdb|2NOM|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Dutp
pdb|2NOM|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Dutp
pdb|2Q0C|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Ctp
pdb|2Q0C|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Ctp
pdb|2Q0D|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Atp
pdb|2Q0D|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Atp
pdb|2Q0E|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Gtp
pdb|2Q0E|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Gtp
pdb|2Q0F|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Utp And Ump
pdb|2Q0F|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Utp And Ump
pdb|2Q0G|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Upu
pdb|2Q0G|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Upu
Length = 353
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 31/74 (41%)
Query: 32 YDDIEDVISLASAGVPLDSKDSQGRTALHMASANGHLGIVEYLIGRGVDINASNEEKNTP 91
+D + VISL G+ + ++A A NG ++ I ++N + TP
Sbjct: 272 FDSDKQVISLNRPGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTP 331
Query: 92 LHYACLNGHTEVAK 105
L L H E A+
Sbjct: 332 LKRDFLRRHLEKAR 345
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.128 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,277,394
Number of Sequences: 62578
Number of extensions: 159915
Number of successful extensions: 927
Number of sequences better than 100.0: 138
Number of HSP's better than 100.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 379
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)