Query 031665
Match_columns 155
No_of_seqs 119 out of 1164
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:41:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01518 RHOD_YceA Member of th 99.7 1.1E-17 2.3E-22 116.1 5.7 77 49-154 2-78 (101)
2 KOG1530 Rhodanese-related sulf 99.7 6.9E-17 1.5E-21 117.0 6.9 87 45-154 19-106 (136)
3 cd01523 RHOD_Lact_B Member of 99.7 9.2E-17 2E-21 111.1 6.5 77 51-154 1-78 (100)
4 cd01520 RHOD_YbbB Member of th 99.7 3.6E-17 7.8E-22 118.6 3.5 101 51-154 1-104 (128)
5 cd01533 4RHOD_Repeat_2 Member 99.6 1.3E-16 2.8E-21 112.2 4.7 75 46-154 7-83 (109)
6 cd01522 RHOD_1 Member of the R 99.6 4.6E-16 1E-20 111.2 7.6 79 51-154 1-81 (117)
7 cd01534 4RHOD_Repeat_3 Member 99.6 3.1E-16 6.7E-21 107.8 4.9 70 51-154 1-73 (95)
8 PLN02160 thiosulfate sulfurtra 99.6 7.1E-16 1.5E-20 113.4 7.0 84 47-154 13-98 (136)
9 cd01519 RHOD_HSP67B2 Member of 99.6 7E-16 1.5E-20 107.3 6.0 80 52-154 2-83 (106)
10 cd01527 RHOD_YgaP Member of th 99.6 8E-16 1.7E-20 106.1 5.7 70 49-154 2-71 (99)
11 cd01526 RHOD_ThiF Member of th 99.6 6.7E-16 1.4E-20 110.9 5.2 85 45-154 4-89 (122)
12 cd01528 RHOD_2 Member of the R 99.6 2.8E-15 6E-20 104.0 6.2 73 50-154 1-75 (101)
13 cd01530 Cdc25 Cdc25 phosphatas 99.6 4.5E-15 9.8E-20 106.9 7.3 76 49-154 2-86 (121)
14 PRK00162 glpE thiosulfate sulf 99.6 2.1E-15 4.5E-20 105.9 4.2 73 47-154 3-75 (108)
15 TIGR03167 tRNA_sel_U_synt tRNA 99.6 1.2E-15 2.6E-20 126.1 3.3 89 64-154 2-92 (311)
16 PF00581 Rhodanese: Rhodanese- 99.6 1.4E-14 3.1E-19 100.6 8.0 84 52-154 1-84 (113)
17 cd01447 Polysulfide_ST Polysul 99.6 7.2E-15 1.6E-19 101.4 5.7 77 51-154 1-78 (103)
18 PRK11784 tRNA 2-selenouridine 99.6 4.6E-15 1E-19 124.2 5.5 100 52-154 4-106 (345)
19 cd01449 TST_Repeat_2 Thiosulfa 99.5 9.8E-15 2.1E-19 103.4 6.0 82 51-154 1-95 (118)
20 cd01444 GlpE_ST GlpE sulfurtra 99.5 5.5E-15 1.2E-19 100.9 4.4 70 50-154 1-73 (96)
21 cd01524 RHOD_Pyr_redox Member 99.5 5.7E-15 1.2E-19 100.5 3.4 68 51-154 1-68 (90)
22 cd01531 Acr2p Eukaryotic arsen 99.5 1.2E-14 2.7E-19 102.8 5.3 75 48-154 1-80 (113)
23 cd01525 RHOD_Kc Member of the 99.5 2.2E-14 4.7E-19 99.7 5.9 78 51-154 1-82 (105)
24 cd01443 Cdc25_Acr2p Cdc25 enzy 99.5 3.1E-14 6.7E-19 100.8 6.5 76 49-154 2-84 (113)
25 PRK01415 hypothetical protein; 99.5 1.5E-14 3.3E-19 116.0 5.4 79 47-154 110-188 (247)
26 cd01521 RHOD_PspE2 Member of t 99.5 3.3E-14 7.1E-19 100.3 5.1 73 48-154 7-83 (110)
27 cd01448 TST_Repeat_1 Thiosulfa 99.5 1.2E-13 2.7E-18 98.5 8.0 85 51-153 2-96 (122)
28 PRK05320 rhodanese superfamily 99.5 5.6E-14 1.2E-18 113.5 5.9 80 46-154 107-192 (257)
29 cd01529 4RHOD_Repeats Member o 99.5 6.7E-14 1.5E-18 96.1 5.4 64 62-154 10-73 (96)
30 TIGR03865 PQQ_CXXCW PQQ-depend 99.4 2.8E-13 6.1E-18 102.4 7.7 86 46-154 33-134 (162)
31 PRK00142 putative rhodanese-re 99.4 1.3E-13 2.9E-18 114.1 6.0 80 46-154 109-188 (314)
32 PRK07411 hypothetical protein; 99.4 5.1E-13 1.1E-17 113.5 6.1 79 46-154 279-359 (390)
33 cd01532 4RHOD_Repeat_1 Member 99.4 2.8E-13 6.2E-18 92.7 3.6 58 59-150 5-63 (92)
34 COG2897 SseA Rhodanese-related 99.4 1.3E-12 2.8E-17 106.8 7.1 83 48-152 155-249 (285)
35 COG0607 PspE Rhodanese-related 99.4 1.4E-12 2.9E-17 90.7 6.2 69 53-154 9-78 (110)
36 TIGR02981 phageshock_pspE phag 99.3 4.2E-13 9.1E-18 94.1 2.8 58 63-154 17-75 (101)
37 smart00450 RHOD Rhodanese Homo 99.3 2.1E-12 4.5E-17 87.0 5.5 71 62-154 2-73 (100)
38 PRK10287 thiosulfate:cyanide s 99.3 2E-12 4.3E-17 91.2 5.4 59 62-154 18-77 (104)
39 cd00158 RHOD Rhodanese Homolog 99.3 1E-12 2.2E-17 87.5 3.6 66 56-154 2-67 (89)
40 PLN02723 3-mercaptopyruvate su 99.3 1.9E-12 4.1E-17 107.3 5.4 82 51-153 192-285 (320)
41 cd01445 TST_Repeats Thiosulfat 99.3 6.5E-12 1.4E-16 92.5 7.5 83 51-151 1-112 (138)
42 PRK05600 thiamine biosynthesis 99.3 1.6E-12 3.6E-17 109.8 4.7 76 49-154 271-349 (370)
43 PRK07878 molybdopterin biosynt 99.3 2.8E-12 6.1E-17 109.0 5.9 76 46-154 284-360 (392)
44 PRK11493 sseA 3-mercaptopyruva 99.3 8E-12 1.7E-16 101.7 8.1 84 49-150 5-100 (281)
45 PRK08762 molybdopterin biosynt 99.3 1.7E-12 3.7E-17 109.6 4.3 72 48-154 2-74 (376)
46 cd01446 DSP_MapKP N-terminal r 99.2 1.5E-11 3.4E-16 89.1 6.0 43 50-92 1-45 (132)
47 PRK11493 sseA 3-mercaptopyruva 99.2 1.4E-11 3E-16 100.3 5.2 80 51-153 155-247 (281)
48 cd01535 4RHOD_Repeat_4 Member 99.2 1.1E-11 2.3E-16 92.2 2.8 64 56-154 2-66 (145)
49 PRK09629 bifunctional thiosulf 99.2 6.4E-11 1.4E-15 105.8 8.1 82 49-148 9-92 (610)
50 PRK05597 molybdopterin biosynt 99.2 3E-11 6.6E-16 101.6 5.4 74 46-154 258-331 (355)
51 PRK09629 bifunctional thiosulf 99.2 3.9E-11 8.4E-16 107.2 6.3 83 49-153 147-239 (610)
52 PLN02723 3-mercaptopyruvate su 99.2 1.3E-10 2.9E-15 96.3 8.4 84 49-150 22-116 (320)
53 PRK01269 tRNA s(4)U8 sulfurtra 99.0 1.3E-10 2.8E-15 101.3 3.8 57 63-154 406-466 (482)
54 KOG2017 Molybdopterin synthase 98.8 3.9E-09 8.6E-14 88.0 3.3 79 46-154 314-394 (427)
55 COG1054 Predicted sulfurtransf 98.7 1.2E-08 2.5E-13 83.5 3.6 79 47-154 111-189 (308)
56 KOG3772 M-phase inducer phosph 98.5 9.3E-08 2E-12 79.1 3.8 50 45-94 152-207 (325)
57 COG2897 SseA Rhodanese-related 98.4 1.6E-06 3.5E-11 71.1 7.9 84 48-149 10-102 (285)
58 COG2603 Predicted ATPase [Gene 98.0 1.7E-06 3.7E-11 70.9 0.4 94 56-152 7-103 (334)
59 KOG1529 Mercaptopyruvate sulfu 97.7 1.9E-05 4.2E-10 64.4 2.9 69 62-152 170-251 (286)
60 PF04273 DUF442: Putative phos 96.8 0.0032 7E-08 44.7 4.9 74 49-152 13-101 (110)
61 TIGR01244 conserved hypothetic 96.6 0.008 1.7E-07 43.9 6.1 29 49-77 13-41 (135)
62 COG5105 MIH1 Mitotic inducer, 95.9 0.0054 1.2E-07 51.3 2.3 46 46-91 239-290 (427)
63 KOG1529 Mercaptopyruvate sulfu 95.6 0.064 1.4E-06 44.1 7.6 82 50-149 6-100 (286)
64 PRK00142 putative rhodanese-re 91.5 0.041 8.9E-07 45.8 -0.8 39 51-90 16-54 (314)
65 PLN02727 NAD kinase 91.4 0.73 1.6E-05 43.7 7.1 77 46-151 264-355 (986)
66 cd00127 DSPc Dual specificity 90.7 0.82 1.8E-05 32.3 5.5 68 63-152 27-97 (139)
67 PF13350 Y_phosphatase3: Tyros 90.4 0.45 9.7E-06 35.4 4.1 51 41-91 20-75 (164)
68 COG3453 Uncharacterized protei 88.0 1.5 3.3E-05 31.8 5.1 88 49-152 14-102 (130)
69 TIGR03167 tRNA_sel_U_synt tRNA 87.6 2 4.3E-05 35.8 6.4 36 47-82 134-172 (311)
70 KOG1093 Predicted protein kina 82.9 0.32 6.9E-06 43.8 -0.5 42 46-90 619-660 (725)
71 smart00195 DSPc Dual specifici 77.7 6.4 0.00014 27.8 5.0 20 133-152 74-94 (138)
72 PF00782 DSPc: Dual specificit 75.2 4.6 0.0001 28.3 3.7 20 133-152 69-89 (133)
73 PRK07688 thiamine/molybdopteri 71.3 3.7 8.1E-05 34.5 2.7 38 46-84 274-317 (339)
74 KOG1717 Dual specificity phosp 67.9 2.6 5.6E-05 34.9 1.0 40 49-92 4-43 (343)
75 KOG3636 Uncharacterized conser 65.0 2.9 6.3E-05 36.9 0.8 40 50-89 308-351 (669)
76 COG2453 CDC14 Predicted protei 62.9 7.6 0.00016 29.4 2.7 27 125-151 93-120 (180)
77 PF05706 CDKN3: Cyclin-depende 61.5 4.8 0.0001 30.7 1.4 28 125-152 121-149 (168)
78 PF11339 DUF3141: Protein of u 54.1 14 0.0003 33.3 3.2 80 63-154 69-158 (581)
79 PF07879 PHB_acc_N: PHB/PHA ac 52.3 15 0.00033 23.6 2.3 30 47-76 16-46 (64)
80 PRK12361 hypothetical protein; 52.1 37 0.0008 30.2 5.6 20 134-153 172-192 (547)
81 COG1891 Uncharacterized protei 41.0 23 0.0005 27.7 2.2 28 48-76 5-32 (235)
82 PF04343 DUF488: Protein of un 40.9 30 0.00065 24.3 2.7 23 52-74 1-24 (122)
83 PTZ00242 protein tyrosine phos 39.7 22 0.00048 26.7 2.0 18 135-152 96-114 (166)
84 smart00404 PTPc_motif Protein 38.7 26 0.00056 22.8 2.0 16 137-152 39-55 (105)
85 smart00012 PTPc_DSPc Protein t 38.7 26 0.00056 22.8 2.0 16 137-152 39-55 (105)
86 TIGR01848 PHA_reg_PhaR polyhyd 37.9 34 0.00074 24.2 2.5 30 47-76 16-46 (107)
87 cd00047 PTPc Protein tyrosine 32.4 47 0.001 25.5 2.9 28 125-152 152-182 (231)
88 PTZ00393 protein tyrosine phos 28.4 52 0.0011 26.6 2.5 32 121-152 150-186 (241)
89 PF14566 PTPlike_phytase: Inos 27.5 72 0.0016 23.3 3.0 23 124-147 112-134 (149)
90 smart00194 PTPc Protein tyrosi 24.0 79 0.0017 24.8 2.8 28 125-152 180-209 (258)
91 PF00102 Y_phosphatase: Protei 22.2 83 0.0018 23.7 2.5 27 125-151 157-185 (235)
92 PRK11784 tRNA 2-selenouridine 21.8 3.7E+02 0.0081 22.7 6.5 35 49-83 150-187 (345)
93 PF03568 Peptidase_C50: Peptid 20.1 1.2E+02 0.0026 25.8 3.3 30 114-148 289-319 (383)
No 1
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.71 E-value=1.1e-17 Score=116.15 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=60.4
Q ss_pred cccCHHHHHHHHhcCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHH
Q 031665 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (155)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~~ 128 (155)
+.|+++|+.++++.++.+|||||++.||+.||||||+|+|+..+... ++.+.
T Consensus 2 ~~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~----------------------------~~~~~ 53 (101)
T cd01518 2 TYLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREF----------------------------PFWLD 53 (101)
T ss_pred CcCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhHh----------------------------HHHHH
Confidence 46899999999987788999999999999999999999998765321 01111
Q ss_pred HHHhhCCCCCeEEEEcCCCccccccc
Q 031665 129 SVKSQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 129 ~~~~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
++. ..+++++|||||++|.||..++
T Consensus 54 ~~~-~~~~~~~ivvyC~~G~rs~~a~ 78 (101)
T cd01518 54 ENL-DLLKGKKVLMYCTGGIRCEKAS 78 (101)
T ss_pred hhh-hhcCCCEEEEECCCchhHHHHH
Confidence 111 1368899999999999998765
No 2
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.68 E-value=6.9e-17 Score=117.03 Aligned_cols=87 Identities=28% Similarity=0.498 Sum_probs=73.8
Q ss_pred ccCCcccCHHHHHHHHhcCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCCh
Q 031665 45 RADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124 (155)
Q Consensus 45 ~~~~~~Is~~e~~~~l~~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~ 124 (155)
......++.++++.+++.++.++||||+|+||.+||+|.++|||+...... +...|+
T Consensus 19 ~~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~-----------------------~~l~~~ 75 (136)
T KOG1530|consen 19 ASNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGA-----------------------GALKNP 75 (136)
T ss_pred cCCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccc-----------------------cccCCH
Confidence 356788999999999988889999999999999999999999999654332 123579
Q ss_pred HHHHHHHhhCCC-CCeEEEEcCCCccccccc
Q 031665 125 EFVQSVKSQFSP-ESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 125 ~f~~~~~~~~~~-d~~ivv~C~~G~rS~~aa 154 (155)
+|++.+...+|+ |++||++|++|.||..|.
T Consensus 76 eF~kqvg~~kp~~d~eiIf~C~SG~Rs~~A~ 106 (136)
T KOG1530|consen 76 EFLKQVGSSKPPHDKEIIFGCASGVRSLKAT 106 (136)
T ss_pred HHHHHhcccCCCCCCcEEEEeccCcchhHHH
Confidence 999999988775 679999999999998763
No 3
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.68 E-value=9.2e-17 Score=111.14 Aligned_cols=77 Identities=23% Similarity=0.389 Sum_probs=60.1
Q ss_pred cCHHHHHHHHhc-CCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHH
Q 031665 51 VNAEEAKNLIAV-ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQS 129 (155)
Q Consensus 51 Is~~e~~~~l~~-~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~~~ 129 (155)
|+++|+.+++++ ++.+|||||++.||+.||||||+|+|+..+.+.. .+..++
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~---------------------------~~~~~~ 53 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDF---------------------------LEIEED 53 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHH---------------------------HHhhHH
Confidence 688999999876 5689999999999999999999999987654310 000122
Q ss_pred HHhhCCCCCeEEEEcCCCccccccc
Q 031665 130 VKSQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 130 ~~~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
....++++++||+||.+|.||..++
T Consensus 54 ~~~~~~~~~~ivv~C~~G~rs~~aa 78 (100)
T cd01523 54 ILDQLPDDQEVTVICAKEGSSQFVA 78 (100)
T ss_pred HHhhCCCCCeEEEEcCCCCcHHHHH
Confidence 2345688999999999999998765
No 4
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.66 E-value=3.6e-17 Score=118.62 Aligned_cols=101 Identities=21% Similarity=0.405 Sum_probs=63.5
Q ss_pred cCHHHHHHHHhcCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCC-hHHHHH
Q 031665 51 VNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN-PEFVQS 129 (155)
Q Consensus 51 Is~~e~~~~l~~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~-~~f~~~ 129 (155)
|+++|+.++++ ++.+|||||++.||..||||||+|+|+..+..........++....+ +.+.|..+..+. ++++++
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 77 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREA--AIELGLELVSGKLKRILNE 77 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHH--HHHHHHHHHhhhHHHHHHH
Confidence 68999999987 67899999999999999999999999975432110011111000000 000011111111 345554
Q ss_pred HH-hhCCCCCeEEEEcC-CCccccccc
Q 031665 130 VK-SQFSPESKLLVVCQ-EGLRSVFIF 154 (155)
Q Consensus 130 ~~-~~~~~d~~ivv~C~-~G~rS~~aa 154 (155)
+. ..++++++|||||+ +|.||..++
T Consensus 78 ~~~~~i~~~~~vvvyC~~~G~rs~~a~ 104 (128)
T cd01520 78 AWEARLERDPKLLIYCARGGMRSQSLA 104 (128)
T ss_pred HHHhccCCCCeEEEEeCCCCccHHHHH
Confidence 44 35789999999997 689987664
No 5
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.65 E-value=1.3e-16 Score=112.20 Aligned_cols=75 Identities=25% Similarity=0.232 Sum_probs=59.4
Q ss_pred cCCcccCHHHHHHHHhcC-CcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCCh
Q 031665 46 ADVNYVNAEEAKNLIAVE-RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124 (155)
Q Consensus 46 ~~~~~Is~~e~~~~l~~~-~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~ 124 (155)
.....|+++|+.++++++ +.+|||||++.||..||||||+|+|+..+...
T Consensus 7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~~----------------------------- 57 (109)
T cd01533 7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVLR----------------------------- 57 (109)
T ss_pred ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHH-----------------------------
Confidence 456789999999998764 57899999999999999999999998654321
Q ss_pred HHHHHHHhh-CCCCCeEEEEcCCCccccccc
Q 031665 125 EFVQSVKSQ-FSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 125 ~f~~~~~~~-~~~d~~ivv~C~~G~rS~~aa 154 (155)
++ .. .+++++|||||++|.||..++
T Consensus 58 --~~---~l~~~~~~~ivv~C~~G~rs~~a~ 83 (109)
T cd01533 58 --VG---ELAPDPRTPIVVNCAGRTRSIIGA 83 (109)
T ss_pred --HH---hcCCCCCCeEEEECCCCchHHHHH
Confidence 11 11 246789999999999997654
No 6
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.65 E-value=4.6e-16 Score=111.23 Aligned_cols=79 Identities=20% Similarity=0.410 Sum_probs=64.5
Q ss_pred cCHHHHHHHHhc-CCcEEEeeCChhhhh-hccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHH
Q 031665 51 VNAEEAKNLIAV-ERYAVLDVRDNSQYN-RAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (155)
Q Consensus 51 Is~~e~~~~l~~-~~~~lIDVR~~~ey~-~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~~ 128 (155)
|+++|+.+++++ ++.++||||++.||+ .||||||+|+|+..+.+. .++++|..
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~-------------------------~~~~~~~~ 55 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM-------------------------EINPNFLA 55 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc-------------------------ccCHHHHH
Confidence 689999999987 578999999999999 999999999998766431 11245666
Q ss_pred HHHhhCCCCCeEEEEcCCCccccccc
Q 031665 129 SVKSQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 129 ~~~~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
++....+++++||+||++|.||..++
T Consensus 56 ~l~~~~~~~~~ivv~C~~G~rs~~aa 81 (117)
T cd01522 56 ELEEKVGKDRPVLLLCRSGNRSIAAA 81 (117)
T ss_pred HHHhhCCCCCeEEEEcCCCccHHHHH
Confidence 66666678999999999999997764
No 7
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.63 E-value=3.1e-16 Score=107.76 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=55.1
Q ss_pred cCHHHHHHHHhcC--CcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHH
Q 031665 51 VNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (155)
Q Consensus 51 Is~~e~~~~l~~~--~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~~ 128 (155)
|+++|+.++++++ +.++||||++.||..||||||+|+|+..+... ..
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~--~~----------------------------- 49 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQE--TD----------------------------- 49 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHH--HH-----------------------------
Confidence 6889999999764 57899999999999999999999998654321 00
Q ss_pred HHHhhC-CCCCeEEEEcCCCccccccc
Q 031665 129 SVKSQF-SPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 129 ~~~~~~-~~d~~ivv~C~~G~rS~~aa 154 (155)
... .++++||+||++|.||..++
T Consensus 50 ---~~~~~~~~~iv~~c~~G~rs~~aa 73 (95)
T cd01534 50 ---HFAPVRGARIVLADDDGVRADMTA 73 (95)
T ss_pred ---HhcccCCCeEEEECCCCChHHHHH
Confidence 111 24789999999999987765
No 8
>PLN02160 thiosulfate sulfurtransferase
Probab=99.63 E-value=7.1e-16 Score=113.40 Aligned_cols=84 Identities=30% Similarity=0.537 Sum_probs=65.5
Q ss_pred CCcccCHHHHHHHHhcCCcEEEeeCChhhhhhccCCCe--eeeccccccCCCcchhhhhhhccccccccccCCCCCCCCh
Q 031665 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSS--YHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124 (155)
Q Consensus 47 ~~~~Is~~e~~~~l~~~~~~lIDVR~~~ey~~ghIpgA--vniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~ 124 (155)
.+..++++|+.+++++ +.+|||||++.||..|||||| +|+|+..+..... -.++
T Consensus 13 ~~~~i~~~e~~~~~~~-~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~-----------------------l~~~ 68 (136)
T PLN02160 13 EVVSVDVSQAKTLLQS-GHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGR-----------------------VKNQ 68 (136)
T ss_pred eeeEeCHHHHHHHHhC-CCEEEECCCHHHHhcCCCCCcceecccchhcCcccc-----------------------cCCH
Confidence 4678999999999874 568999999999999999999 8999854422100 0124
Q ss_pred HHHHHHHhhCCCCCeEEEEcCCCccccccc
Q 031665 125 EFVQSVKSQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 125 ~f~~~~~~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
+|+..+...++++++||+||++|.||..|+
T Consensus 69 ~~~~~~~~~~~~~~~IivyC~sG~RS~~Aa 98 (136)
T PLN02160 69 EFLEQVSSLLNPADDILVGCQSGARSLKAT 98 (136)
T ss_pred HHHHHHHhccCCCCcEEEECCCcHHHHHHH
Confidence 566655555678899999999999998875
No 9
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.62 E-value=7e-16 Score=107.27 Aligned_cols=80 Identities=24% Similarity=0.310 Sum_probs=60.4
Q ss_pred CHHHHHHHHh-cCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHH
Q 031665 52 NAEEAKNLIA-VERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSV 130 (155)
Q Consensus 52 s~~e~~~~l~-~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~~~~ 130 (155)
+++++.++++ .++.+|||||++.||..||||||+|+|+..+.+... ....+|.+.+
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~-----------------------~~~~~~~~~~ 58 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDALA-----------------------LSEEEFEKKY 58 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhhC-----------------------CCHHHHHHHh
Confidence 6789999887 667999999999999999999999999876543100 0113454444
Q ss_pred Hhh-CCCCCeEEEEcCCCccccccc
Q 031665 131 KSQ-FSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 131 ~~~-~~~d~~ivv~C~~G~rS~~aa 154 (155)
... .+++++||+||.+|.||..++
T Consensus 59 ~~~~~~~~~~ivv~c~~g~~s~~~~ 83 (106)
T cd01519 59 GFPKPSKDKELIFYCKAGVRSKAAA 83 (106)
T ss_pred cccCCCCCCeEEEECCCcHHHHHHH
Confidence 433 357899999999999987654
No 10
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.61 E-value=8e-16 Score=106.09 Aligned_cols=70 Identities=20% Similarity=0.362 Sum_probs=58.4
Q ss_pred cccCHHHHHHHHhcCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHH
Q 031665 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (155)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~~ 128 (155)
..|+++|+.++++.+ .+|||||++.||..||||||+|+|+..+....
T Consensus 2 ~~i~~~el~~~~~~~-~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~-------------------------------- 48 (99)
T cd01527 2 TTISPNDACELLAQG-AVLVDIREPDEYLRERIPGARLVPLSQLESEG-------------------------------- 48 (99)
T ss_pred CccCHHHHHHHHHCC-CEEEECCCHHHHHhCcCCCCEECChhHhcccc--------------------------------
Confidence 568999999998764 89999999999999999999999987654310
Q ss_pred HHHhhCCCCCeEEEEcCCCccccccc
Q 031665 129 SVKSQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 129 ~~~~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
..++++++||+||++|.||..++
T Consensus 49 ---~~~~~~~~iv~~c~~g~~s~~~~ 71 (99)
T cd01527 49 ---LPLVGANAIIFHCRSGMRTQQNA 71 (99)
T ss_pred ---cCCCCCCcEEEEeCCCchHHHHH
Confidence 12467899999999999987765
No 11
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.61 E-value=6.7e-16 Score=110.91 Aligned_cols=85 Identities=19% Similarity=0.309 Sum_probs=63.4
Q ss_pred ccCCcccCHHHHHHHHhc-CCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCC
Q 031665 45 RADVNYVNAEEAKNLIAV-ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN 123 (155)
Q Consensus 45 ~~~~~~Is~~e~~~~l~~-~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~ 123 (155)
......|+++|+.+++++ ++.+|||||++.||..||||||+|+|+..+.+.. ....+
T Consensus 4 ~~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~--~~~~~-------------------- 61 (122)
T cd01526 4 LSPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSKA--AELKS-------------------- 61 (122)
T ss_pred CCcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhh--hhhhh--------------------
Confidence 345678999999999976 6788999999999999999999999987764321 11000
Q ss_pred hHHHHHHHhhCCCCCeEEEEcCCCccccccc
Q 031665 124 PEFVQSVKSQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 124 ~~f~~~~~~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
. ......++++++||+||++|.||..++
T Consensus 62 --~-~~~~~~~~~~~~ivv~C~~G~rs~~aa 89 (122)
T cd01526 62 --L-QELPLDNDKDSPIYVVCRRGNDSQTAV 89 (122)
T ss_pred --h-hhcccccCCCCcEEEECCCCCcHHHHH
Confidence 0 000123478899999999999997665
No 12
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.59 E-value=2.8e-15 Score=103.97 Aligned_cols=73 Identities=22% Similarity=0.373 Sum_probs=57.1
Q ss_pred ccCHHHHHHHHhcC--CcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHH
Q 031665 50 YVNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFV 127 (155)
Q Consensus 50 ~Is~~e~~~~l~~~--~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~ 127 (155)
.|+++|+.++++.+ +.++||||++.||..+|||||+|+|+..+.+ +.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~-------------------------------~~ 49 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPE-------------------------------RS 49 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHH-------------------------------HH
Confidence 37899999999764 5789999999999999999999999865532 11
Q ss_pred HHHHhhCCCCCeEEEEcCCCccccccc
Q 031665 128 QSVKSQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 128 ~~~~~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
+.+.. .++++++|+||++|.||..++
T Consensus 50 ~~~~~-~~~~~~vv~~c~~g~rs~~~~ 75 (101)
T cd01528 50 KELDS-DNPDKDIVVLCHHGGRSMQVA 75 (101)
T ss_pred HHhcc-cCCCCeEEEEeCCCchHHHHH
Confidence 11111 146889999999999987764
No 13
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.58 E-value=4.5e-15 Score=106.95 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=58.1
Q ss_pred cccCHHHHHHHHhcC------CcEEEeeCChhhhhhccCCCeeeeccc-cccCCCcchhhhhhhccccccccccCCCCCC
Q 031665 49 NYVNAEEAKNLIAVE------RYAVLDVRDNSQYNRAHIKSSYHVPLF-IENQDNDLGTIIKRTVHNNFSGLFFGLPFTK 121 (155)
Q Consensus 49 ~~Is~~e~~~~l~~~------~~~lIDVR~~~ey~~ghIpgAvniP~~-~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~ 121 (155)
..|+++|+.+++.++ +.+|||||++.||..||||||+|+|+. .+.+.
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~-------------------------- 55 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEF-------------------------- 55 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHH--------------------------
Confidence 569999999999753 689999999999999999999999985 23210
Q ss_pred CChHHHHHH-HhhCCCCCeEEEEcC-CCccccccc
Q 031665 122 QNPEFVQSV-KSQFSPESKLLVVCQ-EGLRSVFIF 154 (155)
Q Consensus 122 ~~~~f~~~~-~~~~~~d~~ivv~C~-~G~rS~~aa 154 (155)
+.+.. ...++++++||+||+ +|.||..++
T Consensus 56 ----~~~~~~~~~~~~~~~vv~yC~~sg~rs~~aa 86 (121)
T cd01530 56 ----FLDKPGVASKKKRRVLIFHCEFSSKRGPRMA 86 (121)
T ss_pred ----HHHhhcccccCCCCEEEEECCCccccHHHHH
Confidence 00000 012468999999997 999998775
No 14
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.57 E-value=2.1e-15 Score=105.88 Aligned_cols=73 Identities=19% Similarity=0.311 Sum_probs=60.3
Q ss_pred CCcccCHHHHHHHHhcCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHH
Q 031665 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (155)
Q Consensus 47 ~~~~Is~~e~~~~l~~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f 126 (155)
..+.++++|+.+++++.+.++||||++.||..||||||+|+|+..+.+ +
T Consensus 3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~-------------------------------~ 51 (108)
T PRK00162 3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGA-------------------------------F 51 (108)
T ss_pred CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHHHHHH-------------------------------H
Confidence 467899999999997777899999999999999999999999754321 1
Q ss_pred HHHHHhhCCCCCeEEEEcCCCccccccc
Q 031665 127 VQSVKSQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 127 ~~~~~~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
+ ..++++.+++|||.+|.||..++
T Consensus 52 ~----~~~~~~~~ivv~c~~g~~s~~a~ 75 (108)
T PRK00162 52 M----RQADFDTPVMVMCYHGNSSQGAA 75 (108)
T ss_pred H----HhcCCCCCEEEEeCCCCCHHHHH
Confidence 1 23578899999999999987664
No 15
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.57 E-value=1.2e-15 Score=126.14 Aligned_cols=89 Identities=20% Similarity=0.387 Sum_probs=72.7
Q ss_pred CcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCC-hHHHHHHHhhCCCCCeEEE
Q 031665 64 RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN-PEFVQSVKSQFSPESKLLV 142 (155)
Q Consensus 64 ~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~-~~f~~~~~~~~~~d~~ivv 142 (155)
+.+|||||++.||..||||||+|+|+....++..+++++||.+.. .+...|..++.++ +++++++....+++++||+
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~--~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvv 79 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPF--AAIKLGLALVSPNLAAHVEQWRAFADGPPQPLL 79 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHH--HHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEE
Confidence 468999999999999999999999998877776788888877655 4555677766667 7788887776777778999
Q ss_pred EcC-CCccccccc
Q 031665 143 VCQ-EGLRSVFIF 154 (155)
Q Consensus 143 ~C~-~G~rS~~aa 154 (155)
||. +|.||..++
T Consensus 80 yC~~gG~RS~~aa 92 (311)
T TIGR03167 80 YCWRGGMRSGSLA 92 (311)
T ss_pred EECCCChHHHHHH
Confidence 996 789998765
No 16
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.56 E-value=1.4e-14 Score=100.58 Aligned_cols=84 Identities=23% Similarity=0.413 Sum_probs=60.1
Q ss_pred CHHHHHHHHhcCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHHH
Q 031665 52 NAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVK 131 (155)
Q Consensus 52 s~~e~~~~l~~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~~~~~ 131 (155)
||+|+.+++++++.+|||+|++.+|..||||||+|+|+..+........ .....++.....
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~ 61 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLS-------------------EDKLDEFLKELG 61 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCH-------------------HHHHHHHHHHHT
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCcccccccccccccccc-------------------cccccccccccc
Confidence 6899999996689999999999999999999999999976521111000 001133334444
Q ss_pred hhCCCCCeEEEEcCCCccccccc
Q 031665 132 SQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 132 ~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
..++++++||+||.+|.++..++
T Consensus 62 ~~~~~~~~iv~yc~~~~~~~~~~ 84 (113)
T PF00581_consen 62 KKIDKDKDIVFYCSSGWRSGSAA 84 (113)
T ss_dssp HGSTTTSEEEEEESSSCHHHHHH
T ss_pred ccccccccceeeeecccccchhH
Confidence 45678899999999888876543
No 17
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.55 E-value=7.2e-15 Score=101.38 Aligned_cols=77 Identities=22% Similarity=0.379 Sum_probs=56.6
Q ss_pred cCHHHHHHHHhcCCcEEEeeCChhhh-hhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHH
Q 031665 51 VNAEEAKNLIAVERYAVLDVRDNSQY-NRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQS 129 (155)
Q Consensus 51 Is~~e~~~~l~~~~~~lIDVR~~~ey-~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~~~ 129 (155)
|+++|+.+++++++.+|||||++.+| ..||||||+|+|+..+....+.... +.
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~~~~~------------------------~~-- 54 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDSP------------------------YH-- 54 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcCcccc------------------------cc--
Confidence 68899999997778899999999998 5799999999998654321110000 00
Q ss_pred HHhhCCCCCeEEEEcCCCccccccc
Q 031665 130 VKSQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 130 ~~~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
...++++++|||||++|.||..++
T Consensus 55 -~~~~~~~~~ivv~c~~g~~s~~~~ 78 (103)
T cd01447 55 -KPAFAEDKPFVFYCASGWRSALAG 78 (103)
T ss_pred -ccCCCCCCeEEEEcCCCCcHHHHH
Confidence 013578899999999999987654
No 18
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.55 E-value=4.6e-15 Score=124.23 Aligned_cols=100 Identities=21% Similarity=0.397 Sum_probs=73.6
Q ss_pred CHHHHHHHHhcCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCC-hHHHHHH
Q 031665 52 NAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN-PEFVQSV 130 (155)
Q Consensus 52 s~~e~~~~l~~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~-~~f~~~~ 130 (155)
+..++.+++. ++.+|||||++.||..||||||+|+|+....++..+++++||.+.. .+...|..++.++ ++++.+.
T Consensus 4 ~~~~~~~~~~-~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~--~a~~lg~~lv~~~l~~~~~~~ 80 (345)
T PRK11784 4 DAQDFRALFL-NDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQF--AAIALGHALVAGNIAAHREEA 80 (345)
T ss_pred cHHHHHHHHh-CCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHH--HHHHhhhhhcchhHHHHHHHH
Confidence 4566666653 6889999999999999999999999998777666788888876544 2223454555555 5555554
Q ss_pred HhhCC-CCCeEEEEcC-CCccccccc
Q 031665 131 KSQFS-PESKLLVVCQ-EGLRSVFIF 154 (155)
Q Consensus 131 ~~~~~-~d~~ivv~C~-~G~rS~~aa 154 (155)
...++ ++++||+||+ +|.||..++
T Consensus 81 ~~~~~~~~~~ivvyC~rgG~RS~~aa 106 (345)
T PRK11784 81 WADFPRANPRGLLYCWRGGLRSGSVQ 106 (345)
T ss_pred HHhcccCCCeEEEEECCCChHHHHHH
Confidence 44444 7899999995 789998764
No 19
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.54 E-value=9.8e-15 Score=103.42 Aligned_cols=82 Identities=20% Similarity=0.388 Sum_probs=61.4
Q ss_pred cCHHHHHHHHhcCCcEEEeeCChhhhhh-----------ccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCC
Q 031665 51 VNAEEAKNLIAVERYAVLDVRDNSQYNR-----------AHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (155)
Q Consensus 51 Is~~e~~~~l~~~~~~lIDVR~~~ey~~-----------ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~ 119 (155)
++++++.+++++++.+|||||++.||.. ||||||+|+|+..+.... .
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~----------------------~ 58 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDED----------------------G 58 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCC----------------------C
Confidence 5789999998766789999999999987 999999999987654320 1
Q ss_pred CCCChHHHHHHHhh--CCCCCeEEEEcCCCccccccc
Q 031665 120 TKQNPEFVQSVKSQ--FSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 120 ~~~~~~f~~~~~~~--~~~d~~ivv~C~~G~rS~~aa 154 (155)
..++++.+.+.... ++++++||+||++|.||..++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~ 95 (118)
T cd01449 59 TFKSPEELRALFAALGITPDKPVIVYCGSGVTACVLL 95 (118)
T ss_pred CcCCHHHHHHHHHHcCCCCCCCEEEECCcHHHHHHHH
Confidence 12334444433333 468899999999999887654
No 20
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.54 E-value=5.5e-15 Score=100.90 Aligned_cols=70 Identities=24% Similarity=0.362 Sum_probs=57.7
Q ss_pred ccCHHHHHHHHhc-CCcEEEeeCChhhhhh--ccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHH
Q 031665 50 YVNAEEAKNLIAV-ERYAVLDVRDNSQYNR--AHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (155)
Q Consensus 50 ~Is~~e~~~~l~~-~~~~lIDVR~~~ey~~--ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f 126 (155)
.|+++|+.+++++ .+.++||||++.||.. ||||||+|+|+..+.+
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~-------------------------------- 48 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDD-------------------------------- 48 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHH--------------------------------
Confidence 3789999999876 5689999999999999 9999999999865421
Q ss_pred HHHHHhhCCCCCeEEEEcCCCccccccc
Q 031665 127 VQSVKSQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 127 ~~~~~~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
....++++++|||||++|.||..++
T Consensus 49 ---~~~~~~~~~~ivv~c~~g~~s~~a~ 73 (96)
T cd01444 49 ---WLGDLDRDRPVVVYCYHGNSSAQLA 73 (96)
T ss_pred ---HHhhcCCCCCEEEEeCCCChHHHHH
Confidence 0123578999999999999987764
No 21
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.53 E-value=5.7e-15 Score=100.47 Aligned_cols=68 Identities=24% Similarity=0.447 Sum_probs=55.0
Q ss_pred cCHHHHHHHHhcCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHH
Q 031665 51 VNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSV 130 (155)
Q Consensus 51 Is~~e~~~~l~~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~~~~ 130 (155)
++++|+.+++ .++.++||+|++.+|..||||||+|+|+..+...
T Consensus 1 ~~~~e~~~~~-~~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~----------------------------------- 44 (90)
T cd01524 1 VQWHELDNYR-ADGVTLIDVRTPQEFEKGHIKGAINIPLDELRDR----------------------------------- 44 (90)
T ss_pred CCHHHHHHHh-cCCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHH-----------------------------------
Confidence 5789999988 5678999999999999999999999997654210
Q ss_pred HhhCCCCCeEEEEcCCCccccccc
Q 031665 131 KSQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 131 ~~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
...++++++||+||++|.++..++
T Consensus 45 ~~~~~~~~~vvl~c~~g~~a~~~a 68 (90)
T cd01524 45 LNELPKDKEIIVYCAVGLRGYIAA 68 (90)
T ss_pred HHhcCCCCcEEEEcCCChhHHHHH
Confidence 123567889999999998887664
No 22
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.53 E-value=1.2e-14 Score=102.82 Aligned_cols=75 Identities=27% Similarity=0.412 Sum_probs=57.2
Q ss_pred CcccCHHHHHHHHhc--CCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChH
Q 031665 48 VNYVNAEEAKNLIAV--ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (155)
Q Consensus 48 ~~~Is~~e~~~~l~~--~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~ 125 (155)
++.|+++|+.+++.. ++.++||||++ ||..||||||+|+|+..+... .
T Consensus 1 ~~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~--~--------------------------- 50 (113)
T cd01531 1 VSYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQ--L--------------------------- 50 (113)
T ss_pred CCcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhC--H---------------------------
Confidence 467999999999876 45789999999 999999999999998765431 1
Q ss_pred HHHHHHhh--CCCCCeEEEEcC-CCccccccc
Q 031665 126 FVQSVKSQ--FSPESKLLVVCQ-EGLRSVFIF 154 (155)
Q Consensus 126 f~~~~~~~--~~~d~~ivv~C~-~G~rS~~aa 154 (155)
.++... .+++.+||+||. +|.|+..++
T Consensus 51 --~~~~~~~~~~~~~~iv~yC~~~~~r~~~aa 80 (113)
T cd01531 51 --NQLVQLLSGSKKDTVVFHCALSQVRGPSAA 80 (113)
T ss_pred --HHHHHHHhcCCCCeEEEEeecCCcchHHHH
Confidence 111111 256789999998 678877664
No 23
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.52 E-value=2.2e-14 Score=99.66 Aligned_cols=78 Identities=15% Similarity=0.327 Sum_probs=55.8
Q ss_pred cCHHHHHHHHhcC--CcEEEeeCChhhhhhccCCCeeeeccccccCCC-cchhhhhhhccccccccccCCCCCCCC-hHH
Q 031665 51 VNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDN-DLGTIIKRTVHNNFSGLFFGLPFTKQN-PEF 126 (155)
Q Consensus 51 Is~~e~~~~l~~~--~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~-~~~~~~k~~~~~~~~~~~~g~~~~~~~-~~f 126 (155)
|+++|+.+++.++ +.+|||||++.||..||||||+|+|+..+.... .... .++ ++|
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~--------------------~~~~~~~ 60 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQ--------------------LPTVPRL 60 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhccccccccc--------------------ccchHHH
Confidence 6899999999753 679999999999999999999999987653210 0000 001 111
Q ss_pred HHHHHhhCCCCCeEEEEcCCCccccccc
Q 031665 127 VQSVKSQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 127 ~~~~~~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
. . .++++||+||.+|.||..++
T Consensus 61 ~----~--~~~~~vv~~c~~g~~s~~~a 82 (105)
T cd01525 61 E----N--YKGKIIVIVSHSHKHAALFA 82 (105)
T ss_pred H----h--hcCCeEEEEeCCCccHHHHH
Confidence 1 1 24789999999999987654
No 24
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.51 E-value=3.1e-14 Score=100.84 Aligned_cols=76 Identities=24% Similarity=0.366 Sum_probs=55.6
Q ss_pred cccCHHHHHHHHhcC------CcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCC
Q 031665 49 NYVNAEEAKNLIAVE------RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQ 122 (155)
Q Consensus 49 ~~Is~~e~~~~l~~~------~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~ 122 (155)
+.|+++|++++++.+ +.+|||||++ ||..||||||+|+|+..+.+. .
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~--~------------------------ 54 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQT--L------------------------ 54 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHH--H------------------------
Confidence 579999999999764 5789999999 999999999999998764321 0
Q ss_pred ChHHHHHHHhhCCCCCeEEEEcCC-Cccccccc
Q 031665 123 NPEFVQSVKSQFSPESKLLVVCQE-GLRSVFIF 154 (155)
Q Consensus 123 ~~~f~~~~~~~~~~d~~ivv~C~~-G~rS~~aa 154 (155)
++.++.+. ..+.++||+||.+ |.||..++
T Consensus 55 -~~~~~~~~--~~~~~~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 55 -PQVYALFS--LAGVKLAIFYCGSSQGRGPRAA 84 (113)
T ss_pred -HHHHHHhh--hcCCCEEEEECCCCCcccHHHH
Confidence 11111111 1356789999996 68876654
No 25
>PRK01415 hypothetical protein; Validated
Probab=99.51 E-value=1.5e-14 Score=116.02 Aligned_cols=79 Identities=20% Similarity=0.299 Sum_probs=63.8
Q ss_pred CCcccCHHHHHHHHhcCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHH
Q 031665 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (155)
Q Consensus 47 ~~~~Is~~e~~~~l~~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f 126 (155)
..++|+|+++.+++++++.++||||++.||+.||||||+|+|...+.+- +++
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e~----------------------------~~~ 161 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQF----------------------------PAW 161 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHhhh----------------------------HHH
Confidence 5688999999999988899999999999999999999999998655321 111
Q ss_pred HHHHHhhCCCCCeEEEEcCCCccccccc
Q 031665 127 VQSVKSQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 127 ~~~~~~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
++.. ..++++++|++||.+|.||..|+
T Consensus 162 ~~~~-~~~~k~k~Iv~yCtgGiRs~kAa 188 (247)
T PRK01415 162 VQQN-QELLKGKKIAMVCTGGIRCEKST 188 (247)
T ss_pred Hhhh-hhhcCCCeEEEECCCChHHHHHH
Confidence 1111 12468899999999999998876
No 26
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.49 E-value=3.3e-14 Score=100.28 Aligned_cols=73 Identities=14% Similarity=0.222 Sum_probs=57.5
Q ss_pred CcccCHHHHHHHHhc--CCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChH
Q 031665 48 VNYVNAEEAKNLIAV--ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (155)
Q Consensus 48 ~~~Is~~e~~~~l~~--~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~ 125 (155)
-..++++|+.+++.. ++.+|||||++.+|..||||||+|+|...+...
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~------------------------------ 56 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREICEN------------------------------ 56 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhH------------------------------
Confidence 357999999999875 358999999999999999999999998664311
Q ss_pred HHHHHHhhCCCCCeEEEEcCCCc--cccccc
Q 031665 126 FVQSVKSQFSPESKLLVVCQEGL--RSVFIF 154 (155)
Q Consensus 126 f~~~~~~~~~~d~~ivv~C~~G~--rS~~aa 154 (155)
....++++.+||+||++|. +|..++
T Consensus 57 ----~~~~i~~~~~vvvyc~~g~~~~s~~~a 83 (110)
T cd01521 57 ----ATAKLDKEKLFVVYCDGPGCNGATKAA 83 (110)
T ss_pred ----hhhcCCCCCeEEEEECCCCCchHHHHH
Confidence 0133578899999999874 666554
No 27
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.49 E-value=1.2e-13 Score=98.49 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=62.4
Q ss_pred cCHHHHHHHHhcCCcEEEeeCCh-------hhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCC
Q 031665 51 VNAEEAKNLIAVERYAVLDVRDN-------SQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN 123 (155)
Q Consensus 51 Is~~e~~~~l~~~~~~lIDVR~~-------~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~ 123 (155)
++++++.+++.+++.+|||+|++ .+|..||||||+|+|+..+..... + .....++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~--~----------------~~~~~~~ 63 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKS--P----------------GPHMLPS 63 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCC--C----------------CCCCCCC
Confidence 78999999997778899999999 999999999999999877643210 0 1112233
Q ss_pred -hHHHHHHHhh-CCCCCeEEEEcCC-Ccccccc
Q 031665 124 -PEFVQSVKSQ-FSPESKLLVVCQE-GLRSVFI 153 (155)
Q Consensus 124 -~~f~~~~~~~-~~~d~~ivv~C~~-G~rS~~a 153 (155)
++|.+.+... ++++++||+||++ |.++..+
T Consensus 64 ~~~~~~~~~~~~~~~~~~vv~~c~~g~~~a~~~ 96 (122)
T cd01448 64 PEEFAELLGSLGISNDDTVVVYDDGGGFFAARA 96 (122)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCCccHHHH
Confidence 4454444432 6789999999999 4777654
No 28
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.47 E-value=5.6e-14 Score=113.47 Aligned_cols=80 Identities=14% Similarity=0.198 Sum_probs=61.5
Q ss_pred cCCcccCHHHHHHHHhcC------CcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCC
Q 031665 46 ADVNYVNAEEAKNLIAVE------RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (155)
Q Consensus 46 ~~~~~Is~~e~~~~l~~~------~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~ 119 (155)
.....++++|+.+++++. +.++||||++.||+.||||||+|+|+..+.+.
T Consensus 107 ~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~~------------------------ 162 (257)
T PRK05320 107 GRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTEF------------------------ 162 (257)
T ss_pred CcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhhh------------------------
Confidence 456789999999988652 47899999999999999999999998765331
Q ss_pred CCCChHHHHHHHhhCCCCCeEEEEcCCCccccccc
Q 031665 120 TKQNPEFVQSVKSQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 120 ~~~~~~f~~~~~~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
++.+.+....+ ++++||+||.+|.||..|+
T Consensus 163 ----~~~l~~~~~~~-kdk~IvvyC~~G~Rs~~Aa 192 (257)
T PRK05320 163 ----PEALAAHRADL-AGKTVVSFCTGGIRCEKAA 192 (257)
T ss_pred ----HHHHHhhhhhc-CCCeEEEECCCCHHHHHHH
Confidence 11222211222 7899999999999998876
No 29
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.47 E-value=6.7e-14 Score=96.12 Aligned_cols=64 Identities=19% Similarity=0.267 Sum_probs=48.2
Q ss_pred cCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHHHhhCCCCCeEE
Q 031665 62 VERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPESKLL 141 (155)
Q Consensus 62 ~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~d~~iv 141 (155)
+++.+|||||++.||..||||||+|+|+..+... .+.++. ....+++++||
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~----------------------------~~~~~~-~~~~~~~~~iv 60 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALVLR----------------------------SQELQA-LEAPGRATRYV 60 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCC----------------------------HHHHHH-hhcCCCCCCEE
Confidence 3578999999999999999999999998654321 112222 12357889999
Q ss_pred EEcCCCccccccc
Q 031665 142 VVCQEGLRSVFIF 154 (155)
Q Consensus 142 v~C~~G~rS~~aa 154 (155)
+||.+|.+|..++
T Consensus 61 v~c~~g~~s~~~~ 73 (96)
T cd01529 61 LTCDGSLLARFAA 73 (96)
T ss_pred EEeCChHHHHHHH
Confidence 9999999887654
No 30
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.45 E-value=2.8e-13 Score=102.39 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=60.6
Q ss_pred cCCcccCHHHHHHHHhcCCcEEEeeCChh----hhhhc---------cCCCeeeeccccccCCCcchhhhhhhccccccc
Q 031665 46 ADVNYVNAEEAKNLIAVERYAVLDVRDNS----QYNRA---------HIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSG 112 (155)
Q Consensus 46 ~~~~~Is~~e~~~~l~~~~~~lIDVR~~~----ey~~g---------hIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~ 112 (155)
.....|+++|+.+++++++.+|||||++. ||..| |||||+|+|+....+-...
T Consensus 33 ~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~~~-------------- 98 (162)
T TIGR03865 33 KGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLAPA-------------- 98 (162)
T ss_pred CCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCCCc--------------
Confidence 56788999999999988889999999865 46544 9999999996432110000
Q ss_pred cccCCCCCCCChHHHHHHHhh--CCCCCeEEEEcCCCc-cccccc
Q 031665 113 LFFGLPFTKQNPEFVQSVKSQ--FSPESKLLVVCQEGL-RSVFIF 154 (155)
Q Consensus 113 ~~~g~~~~~~~~~f~~~~~~~--~~~d~~ivv~C~~G~-rS~~aa 154 (155)
..+.|.+.+... .+++++||+||++|. ||..++
T Consensus 99 ---------~~~~~~~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa 134 (162)
T TIGR03865 99 ---------WQAYFRRGLERATGGDKDRPLVFYCLADCWMSWNAA 134 (162)
T ss_pred ---------hhHHHHHHHHHhcCCCCCCEEEEEECCCCHHHHHHH
Confidence 013355555443 268999999999986 776553
No 31
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.44 E-value=1.3e-13 Score=114.13 Aligned_cols=80 Identities=16% Similarity=0.292 Sum_probs=63.0
Q ss_pred cCCcccCHHHHHHHHhcCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChH
Q 031665 46 ADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (155)
Q Consensus 46 ~~~~~Is~~e~~~~l~~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~ 125 (155)
.....++++|+.+++++++.+|||||++.||+.||||||+|+|+..+.+. ++
T Consensus 109 ~~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~----------------------------~~ 160 (314)
T PRK00142 109 NVGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFREF----------------------------PP 160 (314)
T ss_pred cCCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhh----------------------------HH
Confidence 34578999999999988889999999999999999999999998765431 11
Q ss_pred HHHHHHhhCCCCCeEEEEcCCCccccccc
Q 031665 126 FVQSVKSQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 126 f~~~~~~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
.+++. ....++++||+||.+|.||..++
T Consensus 161 ~l~~~-~~~~kdk~IvvyC~~G~Rs~~aa 188 (314)
T PRK00142 161 WVEEN-LDPLKDKKVVMYCTGGIRCEKAS 188 (314)
T ss_pred HHHHh-cCCCCcCeEEEECCCCcHHHHHH
Confidence 11110 11347899999999999998775
No 32
>PRK07411 hypothetical protein; Validated
Probab=99.38 E-value=5.1e-13 Score=113.53 Aligned_cols=79 Identities=27% Similarity=0.402 Sum_probs=62.2
Q ss_pred cCCcccCHHHHHHHHhcC--CcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCC
Q 031665 46 ADVNYVNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN 123 (155)
Q Consensus 46 ~~~~~Is~~e~~~~l~~~--~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~ 123 (155)
.....|+++|+.++++.+ +.++||||++.||+.||||||+|+|+..+.+...
T Consensus 279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~~-------------------------- 332 (390)
T PRK07411 279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGPG-------------------------- 332 (390)
T ss_pred cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhcccc--------------------------
Confidence 456789999999998753 5789999999999999999999999877643210
Q ss_pred hHHHHHHHhhCCCCCeEEEEcCCCccccccc
Q 031665 124 PEFVQSVKSQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 124 ~~f~~~~~~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
.+++ ..++++++||+||++|.||..++
T Consensus 333 ---~~~l-~~l~~d~~IVvyC~~G~RS~~aa 359 (390)
T PRK07411 333 ---VEKV-KELLNGHRLIAHCKMGGRSAKAL 359 (390)
T ss_pred ---hHHH-hhcCCCCeEEEECCCCHHHHHHH
Confidence 1111 12457899999999999998775
No 33
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.38 E-value=2.8e-13 Score=92.65 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=44.3
Q ss_pred HHhcCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHHHhhC-CCC
Q 031665 59 LIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQF-SPE 137 (155)
Q Consensus 59 ~l~~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~~~~~~~~-~~d 137 (155)
++++++.+|||||++.||..+|||||+|+|+..+... . ...+ +++
T Consensus 5 ~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~---------------------------------~-~~~~~~~~ 50 (92)
T cd01532 5 LLAREEIALIDVREEDPFAQSHPLWAANLPLSRLELD---------------------------------A-WVRIPRRD 50 (92)
T ss_pred hhcCCCeEEEECCCHHHHhhCCcccCeeCCHHHHHhh---------------------------------h-HhhCCCCC
Confidence 4455788999999999999999999999998654211 0 0112 358
Q ss_pred CeEEEEcCCCccc
Q 031665 138 SKLLVVCQEGLRS 150 (155)
Q Consensus 138 ~~ivv~C~~G~rS 150 (155)
++|||||.+|.|+
T Consensus 51 ~~ivl~c~~G~~~ 63 (92)
T cd01532 51 TPIVVYGEGGGED 63 (92)
T ss_pred CeEEEEeCCCCch
Confidence 8999999999874
No 34
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.37 E-value=1.3e-12 Score=106.79 Aligned_cols=83 Identities=20% Similarity=0.398 Sum_probs=65.0
Q ss_pred CcccCHHHHHHHHhcCCcEEEeeCChhhhhh----------ccCCCeeeeccccccCCCcchhhhhhhccccccccccCC
Q 031665 48 VNYVNAEEAKNLIAVERYAVLDVRDNSQYNR----------AHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGL 117 (155)
Q Consensus 48 ~~~Is~~e~~~~l~~~~~~lIDVR~~~ey~~----------ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~ 117 (155)
...++..+.....+....+|||+|++++|.. ||||||+|+|+..+.++ +.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~---~~----------------- 214 (285)
T COG2897 155 KAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDD---GG----------------- 214 (285)
T ss_pred cccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcC---CC-----------------
Confidence 3457778888888878889999999999997 99999999999988762 11
Q ss_pred CCCCCChHHHHHHHh--hCCCCCeEEEEcCCCccccc
Q 031665 118 PFTKQNPEFVQSVKS--QFSPESKLLVVCQEGLRSVF 152 (155)
Q Consensus 118 ~~~~~~~~f~~~~~~--~~~~d~~ivv~C~~G~rS~~ 152 (155)
....++.++.+.+ .++++++||+||++|.||+.
T Consensus 215 --~~~~~~~~~~l~~~~gi~~~~~vI~yCgsG~~As~ 249 (285)
T COG2897 215 --LFKSPEEIARLYADAGIDPDKEVIVYCGSGVRASV 249 (285)
T ss_pred --ccCcHHHHHHHHHhcCCCCCCCEEEEcCCchHHHH
Confidence 1123555555553 37899999999999999864
No 35
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.36 E-value=1.4e-12 Score=90.69 Aligned_cols=69 Identities=30% Similarity=0.495 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCCcEEEeeCChhhhhhccCCC-eeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHHH
Q 031665 53 AEEAKNLIAVERYAVLDVRDNSQYNRAHIKS-SYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVK 131 (155)
Q Consensus 53 ~~e~~~~l~~~~~~lIDVR~~~ey~~ghIpg-AvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~~~~~ 131 (155)
..+.......++.++||||++.||+.+|||| ++|+|...+.+.....
T Consensus 9 ~~~~~~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~-------------------------------- 56 (110)
T COG0607 9 EDEAALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLL-------------------------------- 56 (110)
T ss_pred HHHHHHhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhhccc--------------------------------
Confidence 3344444445789999999999999999999 9999998875431100
Q ss_pred hhCCCCCeEEEEcCCCccccccc
Q 031665 132 SQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 132 ~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
. .++++++|+||++|.||..|+
T Consensus 57 ~-~~~~~~ivv~C~~G~rS~~aa 78 (110)
T COG0607 57 E-LPDDDPIVVYCASGVRSAAAA 78 (110)
T ss_pred c-cCCCCeEEEEeCCCCChHHHH
Confidence 0 468999999999999998875
No 36
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.35 E-value=4.2e-13 Score=94.10 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=45.8
Q ss_pred CCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHHHhh-CCCCCeEE
Q 031665 63 ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQ-FSPESKLL 141 (155)
Q Consensus 63 ~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~~~~~~~-~~~d~~iv 141 (155)
....+||||+++||..||||||+|+|+.++... +... .+++.+||
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~----------------------------------l~~~~~~~~~~vv 62 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIKEH----------------------------------IATAVPDKNDTVK 62 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHHHHHHH----------------------------------HHHhCCCCCCeEE
Confidence 567899999999999999999999998654321 0111 24678999
Q ss_pred EEcCCCccccccc
Q 031665 142 VVCQEGLRSVFIF 154 (155)
Q Consensus 142 v~C~~G~rS~~aa 154 (155)
+||++|.||..++
T Consensus 63 lyC~~G~rS~~aa 75 (101)
T TIGR02981 63 LYCNAGRQSGMAK 75 (101)
T ss_pred EEeCCCHHHHHHH
Confidence 9999999998764
No 37
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.33 E-value=2.1e-12 Score=87.02 Aligned_cols=71 Identities=25% Similarity=0.345 Sum_probs=50.4
Q ss_pred cCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHHHh-hCCCCCeE
Q 031665 62 VERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKS-QFSPESKL 140 (155)
Q Consensus 62 ~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~~~~~~-~~~~d~~i 140 (155)
+++.+|||||++.||..||||||+|+|+..+........ ...+.+.... ..+++++|
T Consensus 2 ~~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~i 59 (100)
T smart00450 2 DEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELD----------------------ILEFEELLKRLGLDKDKPV 59 (100)
T ss_pred CCCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcC----------------------HHHHHHHHHHcCCCCCCeE
Confidence 357899999999999999999999999977654211100 0122232222 35688999
Q ss_pred EEEcCCCccccccc
Q 031665 141 LVVCQEGLRSVFIF 154 (155)
Q Consensus 141 vv~C~~G~rS~~aa 154 (155)
|+||.+|.++..++
T Consensus 60 v~~c~~g~~a~~~~ 73 (100)
T smart00450 60 VVYCRSGNRSAKAA 73 (100)
T ss_pred EEEeCCCcHHHHHH
Confidence 99999999886553
No 38
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.33 E-value=2e-12 Score=91.20 Aligned_cols=59 Identities=19% Similarity=0.295 Sum_probs=45.8
Q ss_pred cCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHHHhh-CCCCCeE
Q 031665 62 VERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQ-FSPESKL 140 (155)
Q Consensus 62 ~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~~~~~~~-~~~d~~i 140 (155)
..+-++||+|++.||..||||||+|+|+..+.+. +... .+++++|
T Consensus 18 ~~~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~----------------------------------l~~l~~~~~~~I 63 (104)
T PRK10287 18 FAAEHWIDVRVPEQYQQEHVQGAINIPLKEVKER----------------------------------IATAVPDKNDTV 63 (104)
T ss_pred cCCCEEEECCCHHHHhcCCCCccEECCHHHHHHH----------------------------------HHhcCCCCCCeE
Confidence 3567899999999999999999999998654221 1111 2457889
Q ss_pred EEEcCCCccccccc
Q 031665 141 LVVCQEGLRSVFIF 154 (155)
Q Consensus 141 vv~C~~G~rS~~aa 154 (155)
|+||++|.||..++
T Consensus 64 VlyC~~G~rS~~aa 77 (104)
T PRK10287 64 KLYCNAGRQSGQAK 77 (104)
T ss_pred EEEeCCChHHHHHH
Confidence 99999999988765
No 39
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.33 E-value=1e-12 Score=87.46 Aligned_cols=66 Identities=26% Similarity=0.422 Sum_probs=51.2
Q ss_pred HHHHHhcCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHHHhhCC
Q 031665 56 AKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFS 135 (155)
Q Consensus 56 ~~~~l~~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~ 135 (155)
+.++++.++..+||+|++.||..+|||||+|+|+..+.... .....+
T Consensus 2 ~~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~---------------------------------~~~~~~ 48 (89)
T cd00158 2 LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEERA---------------------------------ALLELD 48 (89)
T ss_pred hHHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhhHH---------------------------------HhhccC
Confidence 45566567899999999999999999999999987653310 012346
Q ss_pred CCCeEEEEcCCCccccccc
Q 031665 136 PESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 136 ~d~~ivv~C~~G~rS~~aa 154 (155)
++++||+||..|.++..++
T Consensus 49 ~~~~vv~~c~~~~~a~~~~ 67 (89)
T cd00158 49 KDKPIVVYCRSGNRSARAA 67 (89)
T ss_pred CCCeEEEEeCCCchHHHHH
Confidence 8899999999998877654
No 40
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.32 E-value=1.9e-12 Score=107.33 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=60.6
Q ss_pred cCHHHHHHHHhcCCcEEEeeCChhhh-----------hhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCC
Q 031665 51 VNAEEAKNLIAVERYAVLDVRDNSQY-----------NRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (155)
Q Consensus 51 Is~~e~~~~l~~~~~~lIDVR~~~ey-----------~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~ 119 (155)
++.+|+.+.+++++.+|||+|++.|| ..||||||+|+|+..+.+.. +.
T Consensus 192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~--~~------------------- 250 (320)
T PLN02723 192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSS--QT------------------- 250 (320)
T ss_pred ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCC--CC-------------------
Confidence 78899999887778899999999998 46999999999997654321 00
Q ss_pred CCCChHHHHHHHh-hCCCCCeEEEEcCCCcccccc
Q 031665 120 TKQNPEFVQSVKS-QFSPESKLLVVCQEGLRSVFI 153 (155)
Q Consensus 120 ~~~~~~f~~~~~~-~~~~d~~ivv~C~~G~rS~~a 153 (155)
..+..++.+.+.. .++++++||+||++|.||..+
T Consensus 251 ~~~~~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~ 285 (320)
T PLN02723 251 LLPAEELKKRFEQEGISLDSPIVASCGTGVTACIL 285 (320)
T ss_pred CCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHH
Confidence 1122444444443 367899999999999998754
No 41
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.31 E-value=6.5e-12 Score=92.54 Aligned_cols=83 Identities=13% Similarity=0.208 Sum_probs=58.6
Q ss_pred cCHHHHHHHHh----cCCcEEEeeCCh--------hhhhh------------ccCCCeeeeccccccCCCcchhhhhhhc
Q 031665 51 VNAEEAKNLIA----VERYAVLDVRDN--------SQYNR------------AHIKSSYHVPLFIENQDNDLGTIIKRTV 106 (155)
Q Consensus 51 Is~~e~~~~l~----~~~~~lIDVR~~--------~ey~~------------ghIpgAvniP~~~l~~~~~~~~~~k~~~ 106 (155)
|+++|+.+.++ +++++|||+|+. .+|.. ||||||+|+|+..+.....
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~--------- 71 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAG--------- 71 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCC---------
Confidence 58899999997 467899999987 89988 9999999999865432100
Q ss_pred cccccccccCCCCCCCC-hHHHHHHHhh-CCCCCeEEEEcCC---Ccccc
Q 031665 107 HNNFSGLFFGLPFTKQN-PEFVQSVKSQ-FSPESKLLVVCQE---GLRSV 151 (155)
Q Consensus 107 ~~~~~~~~~g~~~~~~~-~~f~~~~~~~-~~~d~~ivv~C~~---G~rS~ 151 (155)
......++ .+|.+.+... +.++++||+||.+ |.++.
T Consensus 72 ---------~~~~~~p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~ 112 (138)
T cd01445 72 ---------FEESMEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTAC 112 (138)
T ss_pred ---------CCCCCCCCHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHH
Confidence 01123344 3555555443 6789999999985 55544
No 42
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.31 E-value=1.6e-12 Score=109.79 Aligned_cols=76 Identities=20% Similarity=0.329 Sum_probs=58.5
Q ss_pred cccCHHHHHHHHhcCCcEEEeeCChhhhhhccCC---CeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChH
Q 031665 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIK---SSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (155)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDVR~~~ey~~ghIp---gAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~ 125 (155)
..++++|+.+++++++.++||||++.||+.|||| ||+|+|+..+.+..+
T Consensus 271 ~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~~---------------------------- 322 (370)
T PRK05600 271 ARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDAD---------------------------- 322 (370)
T ss_pred cccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcchh----------------------------
Confidence 3689999999998777899999999999999998 599999987753210
Q ss_pred HHHHHHhhCCCCCeEEEEcCCCccccccc
Q 031665 126 FVQSVKSQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 126 f~~~~~~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
+..++ ..++++ +|||||++|.||..|+
T Consensus 323 ~~~~l-~~~~~~-~Ivv~C~sG~RS~~Aa 349 (370)
T PRK05600 323 ILHAL-SPIDGD-NVVVYCASGIRSADFI 349 (370)
T ss_pred hhhhc-cccCCC-cEEEECCCChhHHHHH
Confidence 01111 112344 8999999999999876
No 43
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.30 E-value=2.8e-12 Score=109.01 Aligned_cols=76 Identities=18% Similarity=0.355 Sum_probs=61.5
Q ss_pred cCCcccCHHHHHHHHhc-CCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCCh
Q 031665 46 ADVNYVNAEEAKNLIAV-ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124 (155)
Q Consensus 46 ~~~~~Is~~e~~~~l~~-~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~ 124 (155)
.....|+++|+.+++++ .+.++||||++.||..||||||+|+|+..+.....
T Consensus 284 ~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~~~--------------------------- 336 (392)
T PRK07878 284 AAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILSGEA--------------------------- 336 (392)
T ss_pred CCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcchhH---------------------------
Confidence 34578999999999875 35789999999999999999999999876542100
Q ss_pred HHHHHHHhhCCCCCeEEEEcCCCccccccc
Q 031665 125 EFVQSVKSQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 125 ~f~~~~~~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
...++++++||+||++|.||..++
T Consensus 337 ------~~~l~~d~~iVvyC~~G~rS~~aa 360 (392)
T PRK07878 337 ------LAKLPQDRTIVLYCKTGVRSAEAL 360 (392)
T ss_pred ------HhhCCCCCcEEEEcCCChHHHHHH
Confidence 023578899999999999998765
No 44
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.30 E-value=8e-12 Score=101.65 Aligned_cols=84 Identities=18% Similarity=0.254 Sum_probs=60.8
Q ss_pred cccCHHHHHHHHhcCCcEEEeeCC----------hhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCC
Q 031665 49 NYVNAEEAKNLIAVERYAVLDVRD----------NSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLP 118 (155)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDVR~----------~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~ 118 (155)
..++++++.+++++++.+|||+|+ +.+|..||||||+|+|+..+..... ..+
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~------------------~~~ 66 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTS------------------PLP 66 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCC------------------CCC
Confidence 358999999999888899999997 6899999999999999866543210 011
Q ss_pred CCCCC-hHHHHHHHhh-CCCCCeEEEEcCCCccc
Q 031665 119 FTKQN-PEFVQSVKSQ-FSPESKLLVVCQEGLRS 150 (155)
Q Consensus 119 ~~~~~-~~f~~~~~~~-~~~d~~ivv~C~~G~rS 150 (155)
...+. .+|.+.+... ++++++||+||.+|.++
T Consensus 67 ~~~~~~~~~~~~~~~~Gi~~d~~VVvyc~~~~~~ 100 (281)
T PRK11493 67 HMMPRPETFAVAMRELGVNQDKHLVVYDEGNLFS 100 (281)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCch
Confidence 12233 3444444443 67899999999987653
No 45
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.30 E-value=1.7e-12 Score=109.63 Aligned_cols=72 Identities=15% Similarity=0.319 Sum_probs=58.2
Q ss_pred CcccCHHHHHHHHhcCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHH
Q 031665 48 VNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFV 127 (155)
Q Consensus 48 ~~~Is~~e~~~~l~~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~ 127 (155)
++.|+++|+.+++++ +.++||||++.||..||||||+|+|+..+.+.
T Consensus 2 v~~is~~el~~~l~~-~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~-------------------------------- 48 (376)
T PRK08762 2 IREISPAEARARAAQ-GAVLIDVREAHERASGQAEGALRIPRGFLELR-------------------------------- 48 (376)
T ss_pred CceeCHHHHHHHHhC-CCEEEECCCHHHHhCCcCCCCEECCHHHHHHH--------------------------------
Confidence 567999999999864 58999999999999999999999998654221
Q ss_pred HHHHhh-CCCCCeEEEEcCCCccccccc
Q 031665 128 QSVKSQ-FSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 128 ~~~~~~-~~~d~~ivv~C~~G~rS~~aa 154 (155)
+... .+++++||+||++|.||..++
T Consensus 49 --~~~~~~~~~~~IvvyC~~G~rs~~aa 74 (376)
T PRK08762 49 --IETHLPDRDREIVLICASGTRSAHAA 74 (376)
T ss_pred --HhhhcCCCCCeEEEEcCCCcHHHHHH
Confidence 0111 267899999999999987765
No 46
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.24 E-value=1.5e-11 Score=89.09 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=38.5
Q ss_pred ccCHHHHHHHHhc--CCcEEEeeCChhhhhhccCCCeeeeccccc
Q 031665 50 YVNAEEAKNLIAV--ERYAVLDVRDNSQYNRAHIKSSYHVPLFIE 92 (155)
Q Consensus 50 ~Is~~e~~~~l~~--~~~~lIDVR~~~ey~~ghIpgAvniP~~~l 92 (155)
.|+++|+.++++. ++.++||||++.+|..||||||+|+|+..+
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~ 45 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTI 45 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHH
Confidence 3799999999975 478999999999999999999999998754
No 47
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.21 E-value=1.4e-11 Score=100.25 Aligned_cols=80 Identities=15% Similarity=0.282 Sum_probs=56.6
Q ss_pred cCHHHHHHHHhcCCcEEEeeCChhhhh-----------hccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCC
Q 031665 51 VNAEEAKNLIAVERYAVLDVRDNSQYN-----------RAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (155)
Q Consensus 51 Is~~e~~~~l~~~~~~lIDVR~~~ey~-----------~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~ 119 (155)
++.+++...+..++.+|||+|++.||. .||||||+|+|+..+.++. .
T Consensus 155 ~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~~---~------------------- 212 (281)
T PRK11493 155 VRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREG---E------------------- 212 (281)
T ss_pred ecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCCC---C-------------------
Confidence 455666666655678999999999995 6999999999998765421 0
Q ss_pred CCCChHHHHH-HHh-hCCCCCeEEEEcCCCcccccc
Q 031665 120 TKQNPEFVQS-VKS-QFSPESKLLVVCQEGLRSVFI 153 (155)
Q Consensus 120 ~~~~~~f~~~-~~~-~~~~d~~ivv~C~~G~rS~~a 153 (155)
...++-+++ +.. .++++++||+||++|.||..+
T Consensus 213 -~~~~~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~ 247 (281)
T PRK11493 213 -LKTTDELDAIFFGRGVSFDRPIIASCGSGVTAAVV 247 (281)
T ss_pred -cCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHH
Confidence 011222332 222 257889999999999998764
No 48
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.18 E-value=1.1e-11 Score=92.17 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=48.4
Q ss_pred HHHHHhc-CCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHHHhhC
Q 031665 56 AKNLIAV-ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQF 134 (155)
Q Consensus 56 ~~~~l~~-~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~~~~~~~~ 134 (155)
+.+++.. .+.+|||||++.+|..||||||+|+|...+.. . ...+
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~----------------------------------~-l~~l 46 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRAQLAQ----------------------------------A-LEKL 46 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHHHHHH----------------------------------H-HHhc
Confidence 4455544 45899999999999999999999998644321 1 1235
Q ss_pred CCCCeEEEEcCCCccccccc
Q 031665 135 SPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 135 ~~d~~ivv~C~~G~rS~~aa 154 (155)
+++.+|||||.+|.+|..++
T Consensus 47 ~~~~~vVv~c~~g~~a~~aa 66 (145)
T cd01535 47 PAAERYVLTCGSSLLARFAA 66 (145)
T ss_pred CCCCCEEEEeCCChHHHHHH
Confidence 67789999999998887654
No 49
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.18 E-value=6.4e-11 Score=105.79 Aligned_cols=82 Identities=13% Similarity=0.194 Sum_probs=59.7
Q ss_pred cccCHHHHHHHHhcCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCC-hHHH
Q 031665 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN-PEFV 127 (155)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~-~~f~ 127 (155)
..|+++|+.+++++++.+|||||++.+|..||||||+|+|+........ ......+. .+|.
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~------------------~~~~~lp~~~~l~ 70 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKP------------------PAPGLLPDTADLE 70 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCC------------------CCCCCCCCHHHHH
Confidence 3599999999998888999999999999999999999999754322100 01112233 3444
Q ss_pred HHHHhh-CCCCCeEEEEcCCCc
Q 031665 128 QSVKSQ-FSPESKLLVVCQEGL 148 (155)
Q Consensus 128 ~~~~~~-~~~d~~ivv~C~~G~ 148 (155)
+.+... ++++++|||||++|.
T Consensus 71 ~~l~~lGI~~d~~VVvYd~~g~ 92 (610)
T PRK09629 71 QLFGELGHNPDAVYVVYDDEGG 92 (610)
T ss_pred HHHHHcCCCCCCEEEEECCCCC
Confidence 444443 578999999999764
No 50
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.17 E-value=3e-11 Score=101.56 Aligned_cols=74 Identities=20% Similarity=0.324 Sum_probs=57.8
Q ss_pred cCCcccCHHHHHHHHhcCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChH
Q 031665 46 ADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (155)
Q Consensus 46 ~~~~~Is~~e~~~~l~~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~ 125 (155)
.....++++++.++. .+.+|||||+++||+.+|||||+|+|+..+......
T Consensus 258 ~~~~~i~~~~~~~~~--~~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~~~--------------------------- 308 (355)
T PRK05597 258 GFGEVLDVPRVSALP--DGVTLIDVREPSEFAAYSIPGAHNVPLSAIREGANP--------------------------- 308 (355)
T ss_pred CcccccCHHHHHhcc--CCCEEEECCCHHHHccCcCCCCEEeCHHHhhhcccc---------------------------
Confidence 344578888888553 568999999999999999999999999776442110
Q ss_pred HHHHHHhhCCCCCeEEEEcCCCccccccc
Q 031665 126 FVQSVKSQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 126 f~~~~~~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
..++++++||+||++|.||..++
T Consensus 309 ------~~~~~~~~IvvyC~~G~rS~~Aa 331 (355)
T PRK05597 309 ------PSVSAGDEVVVYCAAGVRSAQAV 331 (355)
T ss_pred ------ccCCCCCeEEEEcCCCHHHHHHH
Confidence 12467889999999999998765
No 51
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.17 E-value=3.9e-11 Score=107.19 Aligned_cols=83 Identities=16% Similarity=0.254 Sum_probs=61.0
Q ss_pred cccCHHHHHHHHhcCCcEEEeeCChhhhh--------hccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCC
Q 031665 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYN--------RAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFT 120 (155)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDVR~~~ey~--------~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~ 120 (155)
..++.+++.+.+++++.+|||+|++.||. .||||||+|+|+..+.+.. ..
T Consensus 147 ~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~--~~-------------------- 204 (610)
T PRK09629 147 PTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKA--RN-------------------- 204 (610)
T ss_pred ccccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCC--CC--------------------
Confidence 35789999999877788999999999995 6999999999986553321 00
Q ss_pred CCChHHHHHHHhh--CCCCCeEEEEcCCCcccccc
Q 031665 121 KQNPEFVQSVKSQ--FSPESKLLVVCQEGLRSVFI 153 (155)
Q Consensus 121 ~~~~~f~~~~~~~--~~~d~~ivv~C~~G~rS~~a 153 (155)
-+.++.++++... ++++++||+||++|.||..+
T Consensus 205 lk~~~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~ 239 (610)
T PRK09629 205 LRIRQDMPEILRDLGITPDKEVITHCQTHHRSGFT 239 (610)
T ss_pred CCCHHHHHHHHHHcCCCCCCCEEEECCCChHHHHH
Confidence 1123333333332 57899999999999988754
No 52
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.15 E-value=1.3e-10 Score=96.34 Aligned_cols=84 Identities=19% Similarity=0.216 Sum_probs=60.9
Q ss_pred cccCHHHHHHHHhcCCcEEEeeC--------C-hhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCC
Q 031665 49 NYVNAEEAKNLIAVERYAVLDVR--------D-NSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (155)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDVR--------~-~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~ 119 (155)
..|+++++.+++++++.+||||| + ..+|..||||||+|+|+..+.+... +.+.
T Consensus 22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~------------------~~~~ 83 (320)
T PLN02723 22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTT------------------DLPH 83 (320)
T ss_pred ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCC------------------CcCC
Confidence 57999999999987789999996 3 3789999999999999876543211 1122
Q ss_pred CCCC-hHHHHHHHhh-CCCCCeEEEEcCCCccc
Q 031665 120 TKQN-PEFVQSVKSQ-FSPESKLLVVCQEGLRS 150 (155)
Q Consensus 120 ~~~~-~~f~~~~~~~-~~~d~~ivv~C~~G~rS 150 (155)
..+. .+|.+.+.+. +.++++|||||.+|.++
T Consensus 84 ~lp~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~ 116 (320)
T PLN02723 84 MLPSEEAFAAAVSALGIENKDGVVVYDGKGIFS 116 (320)
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEEcCCCcch
Confidence 2334 4455555544 56889999999987654
No 53
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.04 E-value=1.3e-10 Score=101.26 Aligned_cols=57 Identities=14% Similarity=0.300 Sum_probs=47.9
Q ss_pred CCcEEEeeCChhhhhhccCCC----eeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHHHhhCCCCC
Q 031665 63 ERYAVLDVRDNSQYNRAHIKS----SYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPES 138 (155)
Q Consensus 63 ~~~~lIDVR~~~ey~~ghIpg----AvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~d~ 138 (155)
++.++||||+++||+.+|||| |+|+|+..+.+. ...+++++
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~-----------------------------------~~~l~~~~ 450 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQ-----------------------------------FGDLDQSK 450 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHH-----------------------------------HhhcCCCC
Confidence 578999999999999999999 999998765421 02356788
Q ss_pred eEEEEcCCCccccccc
Q 031665 139 KLLVVCQEGLRSVFIF 154 (155)
Q Consensus 139 ~ivv~C~~G~rS~~aa 154 (155)
++|+||++|.||..++
T Consensus 451 ~iivyC~~G~rS~~aa 466 (482)
T PRK01269 451 TYLLYCDRGVMSRLQA 466 (482)
T ss_pred eEEEECCCCHHHHHHH
Confidence 9999999999998876
No 54
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.78 E-value=3.9e-09 Score=87.96 Aligned_cols=79 Identities=16% Similarity=0.331 Sum_probs=62.9
Q ss_pred cCCcccCHHHHHHHHhc-CCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCCh
Q 031665 46 ADVNYVNAEEAKNLIAV-ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124 (155)
Q Consensus 46 ~~~~~Is~~e~~~~l~~-~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~ 124 (155)
.....|+..|.++.+++ ...++||||++.||+-.|+|.|+|||+.++..... .+
T Consensus 314 ~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~-~~------------------------ 368 (427)
T KOG2017|consen 314 EPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSG-KK------------------------ 368 (427)
T ss_pred ChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhh-hh------------------------
Confidence 45678999999999987 67899999999999999999999999988865421 00
Q ss_pred HHHHHHHhhC-CCCCeEEEEcCCCccccccc
Q 031665 125 EFVQSVKSQF-SPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 125 ~f~~~~~~~~-~~d~~ivv~C~~G~rS~~aa 154 (155)
.+... ....+|+|+|+.|+.|+.|+
T Consensus 369 -----~~~~~~~~~~~I~ViCrrGNdSQ~Av 394 (427)
T KOG2017|consen 369 -----LQGDLNTESKDIFVICRRGNDSQRAV 394 (427)
T ss_pred -----hcccccccCCCEEEEeCCCCchHHHH
Confidence 01122 24577999999999999875
No 55
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=98.70 E-value=1.2e-08 Score=83.51 Aligned_cols=79 Identities=15% Similarity=0.254 Sum_probs=62.9
Q ss_pred CCcccCHHHHHHHHhcCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHH
Q 031665 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (155)
Q Consensus 47 ~~~~Is~~e~~~~l~~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f 126 (155)
...+|+|.|..+++.++++++||+|+.-||+-||..||++.+...+.+= |++
T Consensus 111 vG~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFref----------------------------P~~ 162 (308)
T COG1054 111 VGTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFREF----------------------------PAW 162 (308)
T ss_pred ccCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhhhh----------------------------HHH
Confidence 3688999999999999999999999999999999999999997665430 333
Q ss_pred HHHHHhhCCCCCeEEEEcCCCccccccc
Q 031665 127 VQSVKSQFSPESKLLVVCQEGLRSVFIF 154 (155)
Q Consensus 127 ~~~~~~~~~~d~~ivv~C~~G~rS~~aa 154 (155)
+++.... -++++|+.||-+|+|-.++.
T Consensus 163 v~~~~~~-~~~KkVvmyCTGGIRCEKas 189 (308)
T COG1054 163 VEENLDL-LKDKKVVMYCTGGIRCEKAS 189 (308)
T ss_pred HHHHHHh-ccCCcEEEEcCCceeehhhH
Confidence 4433222 24669999999999987764
No 56
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=9.3e-08 Score=79.15 Aligned_cols=50 Identities=24% Similarity=0.400 Sum_probs=42.5
Q ss_pred ccCCcccCHHHHHHHHhc------CCcEEEeeCChhhhhhccCCCeeeeccccccC
Q 031665 45 RADVNYVNAEEAKNLIAV------ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQ 94 (155)
Q Consensus 45 ~~~~~~Is~~e~~~~l~~------~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~ 94 (155)
...+++|++++++.++.. ...+|||+|-|.||..|||+||+|++..+..+
T Consensus 152 ~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~ 207 (325)
T KOG3772|consen 152 SQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQ 207 (325)
T ss_pred cccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhh
Confidence 356789999999999975 13568999999999999999999999876544
No 57
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=98.37 E-value=1.6e-06 Score=71.13 Aligned_cols=84 Identities=12% Similarity=0.096 Sum_probs=60.1
Q ss_pred CcccCHHHHHHHHhcC-----CcEEEeeCCh--hhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCC
Q 031665 48 VNYVNAEEAKNLIAVE-----RYAVLDVRDN--SQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFT 120 (155)
Q Consensus 48 ~~~Is~~e~~~~l~~~-----~~~lIDVR~~--~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~ 120 (155)
..-|+++++.+.+.+. +..+++++.. .+|..+|||||+++++.....+.. +.+.+
T Consensus 10 ~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~------------------~~~~~ 71 (285)
T COG2897 10 EFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPV------------------PLPHM 71 (285)
T ss_pred ceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCC------------------CCCCC
Confidence 4568999999998754 6667777765 899999999999999877554311 12334
Q ss_pred CCC-hHHHHHHHhh-CCCCCeEEEEcCCCcc
Q 031665 121 KQN-PEFVQSVKSQ-FSPESKLLVVCQEGLR 149 (155)
Q Consensus 121 ~~~-~~f~~~~~~~-~~~d~~ivv~C~~G~r 149 (155)
.+. ++|.+.+.+. +..|++||+|...|.-
T Consensus 72 lp~~e~fa~~~~~~GI~~d~tVVvYdd~~~~ 102 (285)
T COG2897 72 LPSPEQFAKLLGELGIRNDDTVVVYDDGGGF 102 (285)
T ss_pred CCCHHHHHHHHHHcCCCCCCEEEEECCCCCe
Confidence 456 4555555554 7899999999986543
No 58
>COG2603 Predicted ATPase [General function prediction only]
Probab=97.98 E-value=1.7e-06 Score=70.85 Aligned_cols=94 Identities=17% Similarity=0.356 Sum_probs=64.6
Q ss_pred HHHHHhcCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCC--hHHHHHHHhh
Q 031665 56 AKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN--PEFVQSVKSQ 133 (155)
Q Consensus 56 ~~~~l~~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~--~~f~~~~~~~ 133 (155)
-.+.+...+..+||||.|.||..|+.|+++|.|.....+...+++.+|++.+. .+...|+..+..+ .+.++..++-
T Consensus 7 ~~~~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~--~a~alg~~~vcG~i~~~~l~ask~f 84 (334)
T COG2603 7 DYRALLLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQD--AAKALGHALVCGEIRQQRLEASKAF 84 (334)
T ss_pred HHHHHHhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcH--HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33444346899999999999999999999999998877777788888876555 3444555555555 3444433332
Q ss_pred CCCCCeEEEEcC-CCccccc
Q 031665 134 FSPESKLLVVCQ-EGLRSVF 152 (155)
Q Consensus 134 ~~~d~~ivv~C~-~G~rS~~ 152 (155)
--+.++-++|. +|.||..
T Consensus 85 -~e~~~~Gi~c~rgg~rsk~ 103 (334)
T COG2603 85 -QEENPVGILCARGGLRSKI 103 (334)
T ss_pred -HHhCCcceeeccccchhHH
Confidence 22345566688 5688754
No 59
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=97.75 E-value=1.9e-05 Score=64.42 Aligned_cols=69 Identities=17% Similarity=0.355 Sum_probs=46.7
Q ss_pred cCCcEEEeeCChhhhh-----------hccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHH
Q 031665 62 VERYAVLDVRDNSQYN-----------RAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSV 130 (155)
Q Consensus 62 ~~~~~lIDVR~~~ey~-----------~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~~~~ 130 (155)
..++.++|.|...+|. .||||||+|+|+..+... .+..| + ++-++..
T Consensus 170 ~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~---~g~~k------------------~-~edl~~~ 227 (286)
T KOG1529|consen 170 TKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDP---DGFIK------------------P-AEDLKHL 227 (286)
T ss_pred cccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhccc---ccccC------------------C-HHHHHHH
Confidence 3578999999999885 699999999999876531 11111 1 2222222
Q ss_pred Hh--hCCCCCeEEEEcCCCccccc
Q 031665 131 KS--QFSPESKLLVVCQEGLRSVF 152 (155)
Q Consensus 131 ~~--~~~~d~~ivv~C~~G~rS~~ 152 (155)
.. .+..++++|+.|..|..+..
T Consensus 228 f~~~~l~~~~p~~~sC~~Gisa~~ 251 (286)
T KOG1529|consen 228 FAQKGLKLSKPVIVSCGTGISASI 251 (286)
T ss_pred HHhcCcccCCCEEEeeccchhHHH
Confidence 22 24457999999999977543
No 60
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.75 E-value=0.0032 Score=44.73 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=37.6
Q ss_pred cccCHHHHHHHHhcCCcEEEeeCChhhhhhccCC------------C--eeeeccccccCCCcchhhhhhhccccccccc
Q 031665 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIK------------S--SYHVPLFIENQDNDLGTIIKRTVHNNFSGLF 114 (155)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDVR~~~ey~~ghIp------------g--AvniP~~~l~~~~~~~~~~k~~~~~~~~~~~ 114 (155)
..++++++.++....=-.||+.|+..|-. +-| | -+|+|+..
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~----------------------- 67 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDG----------------------- 67 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----T-----------------------
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCC-----------------------
Confidence 46899999988764444799999875521 111 1 34555432
Q ss_pred cCCCCCCCChHHHHHHHhhCC-CCCeEEEEcCCCccccc
Q 031665 115 FGLPFTKQNPEFVQSVKSQFS-PESKLLVVCQEGLRSVF 152 (155)
Q Consensus 115 ~g~~~~~~~~~f~~~~~~~~~-~d~~ivv~C~~G~rS~~ 152 (155)
...+++-++.+...+. .+++|++||++|.||..
T Consensus 68 -----~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG~Ra~~ 101 (110)
T PF04273_consen 68 -----GAITEEDVEAFADALESLPKPVLAHCRSGTRASA 101 (110)
T ss_dssp -----TT--HHHHHHHHHHHHTTTTSEEEE-SCSHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHhCCCCEEEECCCChhHHH
Confidence 1223344444444432 35699999999999854
No 61
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.56 E-value=0.008 Score=43.85 Aligned_cols=29 Identities=10% Similarity=0.127 Sum_probs=21.2
Q ss_pred cccCHHHHHHHHhcCCcEEEeeCChhhhh
Q 031665 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYN 77 (155)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDVR~~~ey~ 77 (155)
..++++++..+.+.+=-.|||.|+..|..
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~ 41 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREEE 41 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCC
Confidence 56888888776544444799999977643
No 62
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=95.86 E-value=0.0054 Score=51.32 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=39.2
Q ss_pred cCCcccCHHHHHHHHhc------CCcEEEeeCChhhhhhccCCCeeeecccc
Q 031665 46 ADVNYVNAEEAKNLIAV------ERYAVLDVRDNSQYNRAHIKSSYHVPLFI 91 (155)
Q Consensus 46 ~~~~~Is~~e~~~~l~~------~~~~lIDVR~~~ey~~ghIpgAvniP~~~ 91 (155)
..++.|+++.++++++. .+.+|||.|=+-||..|||-+||||...+
T Consensus 239 Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~ 290 (427)
T COG5105 239 DSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTK 290 (427)
T ss_pred cchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHH
Confidence 45788999999998864 25679999999999999999999998653
No 63
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=95.62 E-value=0.064 Score=44.09 Aligned_cols=82 Identities=12% Similarity=0.139 Sum_probs=55.8
Q ss_pred ccCHHHHHHHHhcCCcEEEeeC---------ChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCC
Q 031665 50 YVNAEEAKNLIAVERYAVLDVR---------DNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFT 120 (155)
Q Consensus 50 ~Is~~e~~~~l~~~~~~lIDVR---------~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~ 120 (155)
-+++..+.+++.+++..|||.- ...||..-|||||.++.+........ . ....
T Consensus 6 iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~---~---------------~~~~ 67 (286)
T KOG1529|consen 6 IVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSS---P---------------YRHM 67 (286)
T ss_pred ccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCC---c---------------cccc
Confidence 4788899999887889999973 23477889999999998866543211 1 1122
Q ss_pred CCC-hHHHHHHHhh-CCCCCeEEEEcC--CCcc
Q 031665 121 KQN-PEFVQSVKSQ-FSPESKLLVVCQ--EGLR 149 (155)
Q Consensus 121 ~~~-~~f~~~~~~~-~~~d~~ivv~C~--~G~r 149 (155)
.+. +.|.+-+... ++.++.+|||.+ .|.-
T Consensus 68 lp~~e~Fa~y~~~lGi~n~d~vViYd~~~~Gm~ 100 (286)
T KOG1529|consen 68 LPTAEHFAEYASRLGVDNGDHVVIYDRGDGGMF 100 (286)
T ss_pred CccHHHHHHHHHhcCCCCCCeEEEEcCCCccee
Confidence 333 4455544444 678899999999 5543
No 64
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=91.45 E-value=0.041 Score=45.81 Aligned_cols=39 Identities=8% Similarity=0.009 Sum_probs=32.3
Q ss_pred cCHHHHHHHHhcCCcEEEeeCChhhhhhccCCCeeeeccc
Q 031665 51 VNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLF 90 (155)
Q Consensus 51 Is~~e~~~~l~~~~~~lIDVR~~~ey~~ghIpgAvniP~~ 90 (155)
-+++++.+.+. ....++|+|.+..|..+||||++|+|..
T Consensus 16 ~~~~~~~~~l~-~~~~~~d~rg~i~~a~egIngtis~~~~ 54 (314)
T PRK00142 16 EDPEAFRDEHL-ALCKSLGLKGRILVAEEGINGTVSGTIE 54 (314)
T ss_pred CCHHHHHHHHH-HHHHHcCCeeEEEEcCCCceEEEEecHH
Confidence 34677777664 3567899999999999999999999984
No 65
>PLN02727 NAD kinase
Probab=91.43 E-value=0.73 Score=43.69 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=48.2
Q ss_pred cCCcccCHHHHHHHHhcCCc-EEEeeCChhhhhhccCC----------C--eeeeccccccCCCcchhhhhhhccccccc
Q 031665 46 ADVNYVNAEEAKNLIAVERY-AVLDVRDNSQYNRAHIK----------S--SYHVPLFIENQDNDLGTIIKRTVHNNFSG 112 (155)
Q Consensus 46 ~~~~~Is~~e~~~~l~~~~~-~lIDVR~~~ey~~ghIp----------g--AvniP~~~l~~~~~~~~~~k~~~~~~~~~ 112 (155)
....+++++++..+.+ .++ .||+.|+..|- .++.+ | -+|+|+..
T Consensus 264 ~rsgQpspe~la~LA~-~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~--------------------- 320 (986)
T PLN02727 264 WRGGQVTEEGLKWLLE-KGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEV--------------------- 320 (986)
T ss_pred EEeCCCCHHHHHHHHH-CCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCC---------------------
Confidence 3456799999988765 455 69999997762 11110 1 23444321
Q ss_pred cccCCCCCCCChHHHHHHHhhC-C-CCCeEEEEcCCCcccc
Q 031665 113 LFFGLPFTKQNPEFVQSVKSQF-S-PESKLLVVCQEGLRSV 151 (155)
Q Consensus 113 ~~~g~~~~~~~~~f~~~~~~~~-~-~d~~ivv~C~~G~rS~ 151 (155)
...+.++.++++.+.+ + -.++|+++|++|.|+.
T Consensus 321 ------~~apt~EqVe~fa~~l~~slpkPVLvHCKSGarRA 355 (986)
T PLN02727 321 ------RTAPSAEQVEKFASLVSDSSKKPIYLHSKEGVWRT 355 (986)
T ss_pred ------CCCCCHHHHHHHHHHHHhhcCCCEEEECCCCCchH
Confidence 1223456666666666 3 4689999999998543
No 66
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=90.66 E-value=0.82 Score=32.33 Aligned_cols=68 Identities=22% Similarity=0.284 Sum_probs=36.7
Q ss_pred CCcEEEeeCChhhhhhccCCC--eeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHHHhhCCCCCeE
Q 031665 63 ERYAVLDVRDNSQYNRAHIKS--SYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPESKL 140 (155)
Q Consensus 63 ~~~~lIDVR~~~ey~~ghIpg--AvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~d~~i 140 (155)
+=..|||+++..++..-+.+| -.++|+.+.... +..... +++++-+......+.+|
T Consensus 27 gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~---------------------~~~~~~i~~~~~~~~~v 84 (139)
T cd00127 27 GITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQ-DISKYF---------------------DEAVDFIDDAREKGGKV 84 (139)
T ss_pred CCCEEEEcccCCCCcccCCCCceEEEEEceeCCCC-ChHHHH---------------------HHHHHHHHHHHhcCCcE
Confidence 344799999987752222222 456676543211 110000 22333333334456799
Q ss_pred EEEcCCCc-cccc
Q 031665 141 LVVCQEGL-RSVF 152 (155)
Q Consensus 141 vv~C~~G~-rS~~ 152 (155)
+|.|..|. ||..
T Consensus 85 lVHC~~G~~Rs~~ 97 (139)
T cd00127 85 LVHCLAGVSRSAT 97 (139)
T ss_pred EEECCCCCchhHH
Confidence 99999884 7754
No 67
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=90.42 E-value=0.45 Score=35.40 Aligned_cols=51 Identities=18% Similarity=0.359 Sum_probs=26.0
Q ss_pred hhhhccCCcccCHHHHHHHHhcCCcEEEeeCChhhhhh---ccCCCe--eeecccc
Q 031665 41 NLKIRADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNR---AHIKSS--YHVPLFI 91 (155)
Q Consensus 41 ~~~~~~~~~~Is~~e~~~~l~~~~~~lIDVR~~~ey~~---ghIpgA--vniP~~~ 91 (155)
.+-..+....+|+++...+..-.=-.|||.|++.|... -.++|. +|+|+..
T Consensus 20 ~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~ 75 (164)
T PF13350_consen 20 RLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFG 75 (164)
T ss_dssp SEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-
T ss_pred cEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccc
Confidence 34455667889999998777434457999999999874 334454 5666654
No 68
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.04 E-value=1.5 Score=31.83 Aligned_cols=88 Identities=11% Similarity=0.153 Sum_probs=45.6
Q ss_pred cccCHHHHHHHHhcCCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHH
Q 031665 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (155)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~~~f~~ 128 (155)
..++++++.++....=..||--||..|-. .=|+ +.-+ ....+ +.++.-.+.++......++-++
T Consensus 14 gQi~~~D~~~iaa~GFksiI~nRPDgEe~--~QP~------~~~i-----~~aa~---~aGl~y~~iPV~~~~iT~~dV~ 77 (130)
T COG3453 14 GQISPADIASIAALGFKSIICNRPDGEEP--GQPG------FAAI-----AAAAE---AAGLTYTHIPVTGGGITEADVE 77 (130)
T ss_pred CCCCHHHHHHHHHhccceecccCCCCCCC--CCCC------hHHH-----HHHHH---hcCCceEEeecCCCCCCHHHHH
Confidence 56889999887654334699999855431 1111 1100 00000 0011111112222223355555
Q ss_pred HHHhhCC-CCCeEEEEcCCCccccc
Q 031665 129 SVKSQFS-PESKLLVVCQEGLRSVF 152 (155)
Q Consensus 129 ~~~~~~~-~d~~ivv~C~~G~rS~~ 152 (155)
.++..++ -+-+|+-||++|.||..
T Consensus 78 ~f~~Al~eaegPVlayCrsGtRs~~ 102 (130)
T COG3453 78 AFQRALDEAEGPVLAYCRSGTRSLN 102 (130)
T ss_pred HHHHHHHHhCCCEEeeecCCchHHH
Confidence 5555553 57789999999999853
No 69
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=87.55 E-value=2 Score=35.80 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=31.7
Q ss_pred CCcccCHHHHHHHHhcCCcEEEeeCChhhhhh---ccCC
Q 031665 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNR---AHIK 82 (155)
Q Consensus 47 ~~~~Is~~e~~~~l~~~~~~lIDVR~~~ey~~---ghIp 82 (155)
+...+...++.+.+...+..+||+|+..+|.. ||||
T Consensus 134 g~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 134 GMTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CCCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCC
Confidence 45678899999999888889999999999997 8888
No 70
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=82.93 E-value=0.32 Score=43.83 Aligned_cols=42 Identities=29% Similarity=0.459 Sum_probs=36.4
Q ss_pred cCCcccCHHHHHHHHhcCCcEEEeeCChhhhhhccCCCeeeeccc
Q 031665 46 ADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLF 90 (155)
Q Consensus 46 ~~~~~Is~~e~~~~l~~~~~~lIDVR~~~ey~~ghIpgAvniP~~ 90 (155)
.....|+++++... ....++|.|...||.++|+++++|+|+.
T Consensus 619 e~~prmsAedl~~~---~~l~v~d~r~~~ef~r~~~s~s~nip~~ 660 (725)
T KOG1093|consen 619 EHCPRISAEDLIWL---KMLYVLDTRQESEFQREHFSDSINIPFN 660 (725)
T ss_pred hcCccccHHHHHHH---HHHHHHhHHHHHHHHHhhccccccCCcc
Confidence 44677888888776 5678999999999999999999999987
No 71
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=77.73 E-value=6.4 Score=27.83 Aligned_cols=20 Identities=40% Similarity=0.483 Sum_probs=15.4
Q ss_pred hCCCCCeEEEEcCCC-ccccc
Q 031665 133 QFSPESKLLVVCQEG-LRSVF 152 (155)
Q Consensus 133 ~~~~d~~ivv~C~~G-~rS~~ 152 (155)
....+.+|+|.|..| .||..
T Consensus 74 ~~~~~~~VlVHC~~G~~RS~~ 94 (138)
T smart00195 74 AEKKGGKVLVHCQAGVSRSAT 94 (138)
T ss_pred HhcCCCeEEEECCCCCchHHH
Confidence 345778999999998 47754
No 72
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=75.21 E-value=4.6 Score=28.29 Aligned_cols=20 Identities=40% Similarity=0.522 Sum_probs=15.3
Q ss_pred hCCCCCeEEEEcCCC-ccccc
Q 031665 133 QFSPESKLLVVCQEG-LRSVF 152 (155)
Q Consensus 133 ~~~~d~~ivv~C~~G-~rS~~ 152 (155)
...++.+|+|.|..| .||..
T Consensus 69 ~~~~~~~VlVHC~~G~~RS~~ 89 (133)
T PF00782_consen 69 AISEGGKVLVHCKAGLSRSGA 89 (133)
T ss_dssp HHHTTSEEEEEESSSSSHHHH
T ss_pred hhcccceeEEEeCCCcccchH
Confidence 345778999999988 57654
No 73
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=71.26 E-value=3.7 Score=34.49 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=31.0
Q ss_pred cCCcccCHHHHHHHHh------cCCcEEEeeCChhhhhhccCCCe
Q 031665 46 ADVNYVNAEEAKNLIA------VERYAVLDVRDNSQYNRAHIKSS 84 (155)
Q Consensus 46 ~~~~~Is~~e~~~~l~------~~~~~lIDVR~~~ey~~ghIpgA 84 (155)
.....++++++.+.+. ..+.++||||++. |+-.++|+-
T Consensus 274 ~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~g 317 (339)
T PRK07688 274 PHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDG 317 (339)
T ss_pred CCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCC
Confidence 4457799999999884 2477899999988 999998864
No 74
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=67.88 E-value=2.6 Score=34.86 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=31.9
Q ss_pred cccCHHHHHHHHhcCCcEEEeeCChhhhhhccCCCeeeeccccc
Q 031665 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIE 92 (155)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDVR~~~ey~~ghIpgAvniP~~~l 92 (155)
..++++|+.+.+..++.+++|.|+ +..||.+|+|+-+..+
T Consensus 4 ~~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPal 43 (343)
T KOG1717|consen 4 ISKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPAL 43 (343)
T ss_pred HHHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHH
Confidence 347888999988878999999999 5688888887755444
No 75
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=64.97 E-value=2.9 Score=36.95 Aligned_cols=40 Identities=23% Similarity=0.431 Sum_probs=29.5
Q ss_pred ccCHHHHHHHHh--cC--CcEEEeeCChhhhhhccCCCeeeecc
Q 031665 50 YVNAEEAKNLIA--VE--RYAVLDVRDNSQYNRAHIKSSYHVPL 89 (155)
Q Consensus 50 ~Is~~e~~~~l~--~~--~~~lIDVR~~~ey~~ghIpgAvniP~ 89 (155)
.|++-|+.+.-. .+ +++++|.|+.++|..||+-.|.|..-
T Consensus 308 pisv~el~~~~~~~~~~VrFFiVDcRpaeqynaGHlstaFhlDc 351 (669)
T KOG3636|consen 308 PISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTAFHLDC 351 (669)
T ss_pred chhHHHhhcccccccCceEEEEEeccchhhcccccchhhhcccH
Confidence 355555555321 12 56799999999999999999998764
No 76
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=62.94 E-value=7.6 Score=29.44 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=19.0
Q ss_pred HHHHHHHhhCCCCCeEEEEcCCC-cccc
Q 031665 125 EFVQSVKSQFSPESKLLVVCQEG-LRSV 151 (155)
Q Consensus 125 ~f~~~~~~~~~~d~~ivv~C~~G-~rS~ 151 (155)
++++-+.....+..+|+|.|+.| .||.
T Consensus 93 ~~v~~i~~~~~~g~kVvVHC~~GigRSg 120 (180)
T COG2453 93 KIVDFIEEALSKGKKVVVHCQGGIGRSG 120 (180)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCCchHH
Confidence 34444555566778999999988 6664
No 77
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=61.54 E-value=4.8 Score=30.75 Aligned_cols=28 Identities=21% Similarity=0.482 Sum_probs=17.8
Q ss_pred HHHHHHHhhCCCCCeEEEEcCCC-ccccc
Q 031665 125 EFVQSVKSQFSPESKLLVVCQEG-LRSVF 152 (155)
Q Consensus 125 ~f~~~~~~~~~~d~~ivv~C~~G-~rS~~ 152 (155)
++++++...+..+.+|++.|++| .|+-.
T Consensus 121 ~i~~eL~~~L~~g~~V~vHC~GGlGRtGl 149 (168)
T PF05706_consen 121 QILEELAARLENGRKVLVHCRGGLGRTGL 149 (168)
T ss_dssp HHHHHHHHHHHTT--EEEE-SSSSSHHHH
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCCHHHH
Confidence 35556666677889999999988 56544
No 78
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=54.11 E-value=14 Score=33.29 Aligned_cols=80 Identities=23% Similarity=0.337 Sum_probs=44.2
Q ss_pred CCcEEEeeCChhhhhhccCCCeeeeccccccCCCcchhhhhhhccccccccccCCCCCCCC--------hHHHHHHHhhC
Q 031665 63 ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN--------PEFVQSVKSQF 134 (155)
Q Consensus 63 ~~~~lIDVR~~~ey~~ghIpgAvniP~~~l~~~~~~~~~~k~~~~~~~~~~~~g~~~~~~~--------~~f~~~~~~~~ 134 (155)
.-++|||-|. ||=||= .-+..+..++..++ .++-.||..|...+-.... .+|++++.+..
T Consensus 69 rP~vViDPRA------GHGpGI-----GGFK~dSevG~AL~-~GHPvYFV~F~p~P~pgQTl~DV~~ae~~Fv~~V~~~h 136 (581)
T PF11339_consen 69 RPFVVIDPRA------GHGPGI-----GGFKPDSEVGVALR-AGHPVYFVGFFPEPEPGQTLEDVMRAEAAFVEEVAERH 136 (581)
T ss_pred CCeEEeCCCC------CCCCCc-----cCCCcccHHHHHHH-cCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 4567777775 665541 11222223343344 4566677666655533332 57888888876
Q ss_pred CCCCeEEEE--cCCCccccccc
Q 031665 135 SPESKLLVV--CQEGLRSVFIF 154 (155)
Q Consensus 135 ~~d~~ivv~--C~~G~rS~~aa 154 (155)
+.-.+.++| |++|.-+...|
T Consensus 137 p~~~kp~liGnCQgGWa~~mlA 158 (581)
T PF11339_consen 137 PDAPKPNLIGNCQGGWAAMMLA 158 (581)
T ss_pred CCCCCceEEeccHHHHHHHHHH
Confidence 633244444 99987665443
No 79
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=52.25 E-value=15 Score=23.57 Aligned_cols=30 Identities=20% Similarity=0.468 Sum_probs=24.8
Q ss_pred CCcccCHHHHHHHHhc-CCcEEEeeCChhhh
Q 031665 47 DVNYVNAEEAKNLIAV-ERYAVLDVRDNSQY 76 (155)
Q Consensus 47 ~~~~Is~~e~~~~l~~-~~~~lIDVR~~~ey 76 (155)
.-.+|+.+++.+++.. .++.++|..+-++-
T Consensus 16 ~s~YiTL~di~~lV~~g~~~~V~D~ktgeDi 46 (64)
T PF07879_consen 16 TSSYITLEDIAQLVREGEDFKVVDAKTGEDI 46 (64)
T ss_pred CceeEeHHHHHHHHHCCCeEEEEECCCCccc
Confidence 4578999999999976 67899999986554
No 80
>PRK12361 hypothetical protein; Provisional
Probab=52.07 E-value=37 Score=30.20 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=14.9
Q ss_pred CCCCCeEEEEcCCC-cccccc
Q 031665 134 FSPESKLLVVCQEG-LRSVFI 153 (155)
Q Consensus 134 ~~~d~~ivv~C~~G-~rS~~a 153 (155)
...+.+|+|.|..| .||...
T Consensus 172 ~~~~~~VlVHC~~G~sRSa~v 192 (547)
T PRK12361 172 VRANKSVVVHCALGRGRSVLV 192 (547)
T ss_pred HHCCCeEEEECCCCCCcHHHH
Confidence 34678899999987 666543
No 81
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.04 E-value=23 Score=27.68 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=23.2
Q ss_pred CcccCHHHHHHHHhcCCcEEEeeCChhhh
Q 031665 48 VNYVNAEEAKNLIAVERYAVLDVRDNSQY 76 (155)
Q Consensus 48 ~~~Is~~e~~~~l~~~~~~lIDVR~~~ey 76 (155)
+..|+.+|+.+.+. .+.-||||.+|.|=
T Consensus 5 vSPin~eEA~eAie-GGAdIiDVKNP~EG 32 (235)
T COG1891 5 VSPINREEAIEAIE-GGADIIDVKNPAEG 32 (235)
T ss_pred eccCCHHHHHHHhh-CCCceEeccCcccC
Confidence 46789999999885 68889999998763
No 82
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=40.86 E-value=30 Score=24.28 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=16.5
Q ss_pred CHHHHHHHHhcCCc-EEEeeCChh
Q 031665 52 NAEEAKNLIAVERY-AVLDVRDNS 74 (155)
Q Consensus 52 s~~e~~~~l~~~~~-~lIDVR~~~ 74 (155)
+.+++.+.+...++ +|||||...
T Consensus 1 ~~e~f~~~l~~~~i~~lVDVR~~P 24 (122)
T PF04343_consen 1 SIERFYDLLKKNGIRVLVDVRLWP 24 (122)
T ss_pred CHHHHHHHHHHCCCeEEEEECCCC
Confidence 35677887766665 899999543
No 83
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=39.70 E-value=22 Score=26.66 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=14.1
Q ss_pred CCCCeEEEEcCCC-ccccc
Q 031665 135 SPESKLLVVCQEG-LRSVF 152 (155)
Q Consensus 135 ~~d~~ivv~C~~G-~rS~~ 152 (155)
.++.+|+|.|..| .||..
T Consensus 96 ~~g~~V~VHC~aGigRSgt 114 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPI 114 (166)
T ss_pred cCCCeEEEECCCCCCHHHH
Confidence 4588999999988 66653
No 84
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=38.73 E-value=26 Score=22.76 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=12.3
Q ss_pred CCeEEEEcCCC-ccccc
Q 031665 137 ESKLLVVCQEG-LRSVF 152 (155)
Q Consensus 137 d~~ivv~C~~G-~rS~~ 152 (155)
+.+|+|.|..| .|+..
T Consensus 39 ~~pvlVHC~~G~gRtg~ 55 (105)
T smart00404 39 SGPVVVHCSAGVGRTGT 55 (105)
T ss_pred CCCEEEEeCCCCChhhH
Confidence 67999999977 56643
No 85
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=38.73 E-value=26 Score=22.76 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=12.3
Q ss_pred CCeEEEEcCCC-ccccc
Q 031665 137 ESKLLVVCQEG-LRSVF 152 (155)
Q Consensus 137 d~~ivv~C~~G-~rS~~ 152 (155)
+.+|+|.|..| .|+..
T Consensus 39 ~~pvlVHC~~G~gRtg~ 55 (105)
T smart00012 39 SGPVVVHCSAGVGRTGT 55 (105)
T ss_pred CCCEEEEeCCCCChhhH
Confidence 67999999977 56643
No 86
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=37.87 E-value=34 Score=24.18 Aligned_cols=30 Identities=20% Similarity=0.501 Sum_probs=25.3
Q ss_pred CCcccCHHHHHHHHhc-CCcEEEeeCChhhh
Q 031665 47 DVNYVNAEEAKNLIAV-ERYAVLDVRDNSQY 76 (155)
Q Consensus 47 ~~~~Is~~e~~~~l~~-~~~~lIDVR~~~ey 76 (155)
.-.+|+.+++.+++.. .++.++|..+-++-
T Consensus 16 tS~YITLedi~~lV~~g~~f~V~DakTgeDi 46 (107)
T TIGR01848 16 TSSYVTLEDIRDLVREGREFQVVDSKSGDDL 46 (107)
T ss_pred ccceeeHHHHHHHHHCCCeEEEEECCCCchh
Confidence 4578999999999976 68899999987664
No 87
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=32.40 E-value=47 Score=25.54 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=17.9
Q ss_pred HHHHHHHhhC--CCCCeEEEEcCCC-ccccc
Q 031665 125 EFVQSVKSQF--SPESKLLVVCQEG-LRSVF 152 (155)
Q Consensus 125 ~f~~~~~~~~--~~d~~ivv~C~~G-~rS~~ 152 (155)
+|+..+.... +.+.+|+|.|..| .||..
T Consensus 152 ~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~ 182 (231)
T cd00047 152 DLLRKVRKSQQQPGSGPIVVHCSAGVGRTGT 182 (231)
T ss_pred HHHHHHHHHhccCCCCCeEEECCCCCCccch
Confidence 4444444433 3467999999976 67654
No 88
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=28.37 E-value=52 Score=26.57 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=19.6
Q ss_pred CCChHHHHHHHh----hCCCCCeEEEEcCCC-ccccc
Q 031665 121 KQNPEFVQSVKS----QFSPESKLLVVCQEG-LRSVF 152 (155)
Q Consensus 121 ~~~~~f~~~~~~----~~~~d~~ivv~C~~G-~rS~~ 152 (155)
.|..++++++.. .+..+.+|+|.|..| .|+..
T Consensus 150 aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGt 186 (241)
T PTZ00393 150 APTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPV 186 (241)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 344444444433 345678999999987 56543
No 89
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=27.53 E-value=72 Score=23.30 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=14.4
Q ss_pred hHHHHHHHhhCCCCCeEEEEcCCC
Q 031665 124 PEFVQSVKSQFSPESKLLVVCQEG 147 (155)
Q Consensus 124 ~~f~~~~~~~~~~d~~ivv~C~~G 147 (155)
.+|++-++.. +++.-+++-|+.|
T Consensus 112 D~fi~~v~~~-p~~~~l~fhC~~G 134 (149)
T PF14566_consen 112 DAFINFVKSL-PKDTWLHFHCQAG 134 (149)
T ss_dssp HHHHHHHHTS--TT-EEEEE-SSS
T ss_pred HHHHHHHHhC-CCCCeEEEECCCC
Confidence 3455555554 8899999999987
No 90
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=24.00 E-value=79 Score=24.81 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=17.2
Q ss_pred HHHHHHHhhCC-CCCeEEEEcCCC-ccccc
Q 031665 125 EFVQSVKSQFS-PESKLLVVCQEG-LRSVF 152 (155)
Q Consensus 125 ~f~~~~~~~~~-~d~~ivv~C~~G-~rS~~ 152 (155)
+|+..+..... .+.+|||.|..| .||..
T Consensus 180 ~~i~~v~~~~~~~~~pivVHC~~G~gRsg~ 209 (258)
T smart00194 180 DLVRAVRKSQSTSTGPIVVHCSAGVGRTGT 209 (258)
T ss_pred HHHHHHHHhhccCCCCEEEEeCCCCCccch
Confidence 44444444322 267999999976 66643
No 91
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=22.17 E-value=83 Score=23.71 Aligned_cols=27 Identities=30% Similarity=0.625 Sum_probs=17.3
Q ss_pred HHHHHHHhhC-CCCCeEEEEcCCC-cccc
Q 031665 125 EFVQSVKSQF-SPESKLLVVCQEG-LRSV 151 (155)
Q Consensus 125 ~f~~~~~~~~-~~d~~ivv~C~~G-~rS~ 151 (155)
+|++.+.... +.+.++||.|..| .||.
T Consensus 157 ~~~~~v~~~~~~~~~pivVhc~~G~gRsg 185 (235)
T PF00102_consen 157 DFIRKVNKSKDDPNGPIVVHCSDGVGRSG 185 (235)
T ss_dssp HHHHHHHHHHSTTSSEEEEESSSSSHHHH
T ss_pred hhhhhccccccCCccceEeeccccccccc
Confidence 3444444443 4678999999977 4543
No 92
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=21.81 E-value=3.7e+02 Score=22.66 Aligned_cols=35 Identities=14% Similarity=0.081 Sum_probs=25.5
Q ss_pred cccCHHHHHHHHhcCCcEEEeeCChhhhhh---ccCCC
Q 031665 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNR---AHIKS 83 (155)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDVR~~~ey~~---ghIpg 83 (155)
+-..-.++...+.+.+..+||+|+..+|.. |++++
T Consensus 150 TGsGKT~iL~~L~~~~~~vlDlE~~aehrGS~fG~~~~ 187 (345)
T PRK11784 150 TGSGKTELLQALANAGAQVLDLEGLANHRGSSFGRLGG 187 (345)
T ss_pred CcccHHHHHHHHHhcCCeEEECCchhhhccccccCCCC
Confidence 334556677777667888999999999973 55554
No 93
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=20.11 E-value=1.2e+02 Score=25.85 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=21.3
Q ss_pred ccCCCCCCCChHH-HHHHHhhCCCCCeEEEEcCCCc
Q 031665 114 FFGLPFTKQNPEF-VQSVKSQFSPESKLLVVCQEGL 148 (155)
Q Consensus 114 ~~g~~~~~~~~~f-~~~~~~~~~~d~~ivv~C~~G~ 148 (155)
|.|+....|.++. .+.+. +..+++||..|.
T Consensus 289 w~g~~g~~P~~~e~~~~l~-----~~dlf~Y~GHG~ 319 (383)
T PF03568_consen 289 WKGIIGRAPTEEEFLQALT-----SSDLFLYCGHGS 319 (383)
T ss_pred CCceECCCCCHHHHHHHHH-----hCCeEEEecCCc
Confidence 8888888888544 44333 456999999764
Done!