BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031666
         (155 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L35|B Chain B, Structure Of The Dap12-Nkg2c Transmembrane Heterotrimer
          Length = 32

 Score = 26.2 bits (56), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 75 CPIRQPGVLLIIVVGDWVLSIL 96
          C    PGVL  IVVGD VL++L
Sbjct: 1  CSTVSPGVLAGIVVGDLVLTVL 22


>pdb|2L34|A Chain A, Structure Of The Dap12 Transmembrane Homodimer
 pdb|2L34|B Chain B, Structure Of The Dap12 Transmembrane Homodimer
          Length = 33

 Score = 26.2 bits (56), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 75 CPIRQPGVLLIIVVGDWVLSIL 96
          C    PGVL  IVVGD VL++L
Sbjct: 1  CSTVSPGVLAGIVVGDLVLTVL 22


>pdb|2L35|A Chain A, Structure Of The Dap12-Nkg2c Transmembrane Heterotrimer
          Length = 63

 Score = 25.8 bits (55), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 75 CPIRQPGVLLIIVVGDWVLSIL 96
          C    PGVL  IVVGD VL++L
Sbjct: 1  CSTVSPGVLAGIVVGDLVLTVL 22


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.137    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,914,463
Number of Sequences: 62578
Number of extensions: 123354
Number of successful extensions: 251
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 7
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)