Query 031666
Match_columns 155
No_of_seqs 111 out of 132
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 03:42:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04535 DUF588: Domain of unk 99.9 3.5E-27 7.6E-32 182.1 12.4 129 10-140 1-149 (149)
2 TIGR01569 A_tha_TIGR01569 plan 99.8 9.8E-20 2.1E-24 143.0 11.0 131 17-151 1-153 (154)
3 PF01284 MARVEL: Membrane-asso 98.9 8.2E-08 1.8E-12 70.9 12.6 129 15-147 5-144 (144)
4 KOG4016 Synaptic vesicle prote 80.8 14 0.00031 31.5 8.6 116 16-145 25-163 (233)
5 PF12304 BCLP: Beta-casein lik 43.9 1.9E+02 0.0041 24.1 10.4 95 53-152 44-162 (188)
6 PF07188 KSHV_K8: Kaposi's sar 17.4 72 0.0016 26.4 1.3 15 1-15 1-17 (238)
7 PF06016 Reovirus_L2: Reovirus 16.7 15 0.00032 38.2 -3.4 22 87-108 882-903 (1289)
8 TIGR03068 srtB_sig_NPQTN sorta 14.4 2.7E+02 0.0059 17.0 2.9 24 41-64 6-29 (33)
9 COG0833 LysP Amino acid transp 12.5 5.5E+02 0.012 24.7 5.8 44 14-59 370-413 (541)
10 cd04466 S1_YloQ_GTPase S1_YloQ 11.6 45 0.00097 21.5 -1.2 9 85-93 37-45 (68)
No 1
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=99.95 E-value=3.5e-27 Score=182.06 Aligned_cols=129 Identities=29% Similarity=0.382 Sum_probs=119.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhccc------------cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Q 031666 10 SVGTSASLSLRLGQTIFSSASLLFMSLGVE------------FYSYTSFCYLVTIMGLVIPWSFTMAIVDGYSVLVKCPI 77 (155)
Q Consensus 10 ~~Gt~~~L~LR~~q~~fa~~sl~~M~s~~~------------F~s~TaF~yLVa~~~Lq~lwSl~la~~d~yall~k~~l 77 (155)
++++..+++||+.|++++++|+++|++++| |+++++|+|+|+++++++.||+.|++.++|.+..|+ .
T Consensus 1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~-~ 79 (149)
T PF04535_consen 1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGK-L 79 (149)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-C
Confidence 356789999999999999999999999998 999999999999999999999999999999999999 7
Q ss_pred CCcceeeeeeehhHHHHHHHHHhhhhhhHHHHHHHHcCC------CCCCcc--cChHHHHHHHHHHHHHHH
Q 031666 78 RQPGVLLIIVVGDWVLSILTLAAACSTASVVDLLLRAEN------PYCPPK--FCSRYQISAAMAFLTWFL 140 (155)
Q Consensus 78 ~~~~~~~l~~vGD~V~a~L~~aAAcasagvt~vL~~~d~------~~C~~~--~C~~~~~S~amAFlswf~ 140 (155)
+++...++.+++||+.+||+++|+++++++++ +.++|. +.|... +|+|+++|++++|++|++
T Consensus 80 ~~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~-~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~ 149 (149)
T PF04535_consen 80 RSKLLAWFLFILDQVLAYLLFSAASAAAAVAY-LGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA 149 (149)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence 77788888999999999999999999999995 877773 469976 699999999999999974
No 2
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=99.82 E-value=9.8e-20 Score=143.00 Aligned_cols=131 Identities=21% Similarity=0.265 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc--------------cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcce
Q 031666 17 LSLRLGQTIFSSASLLFMSLGVE--------------FYSYTSFCYLVTIMGLVIPWSFTMAIVDGYSVLVKCPIRQPGV 82 (155)
Q Consensus 17 L~LR~~q~~fa~~sl~~M~s~~~--------------F~s~TaF~yLVa~~~Lq~lwSl~la~~d~yall~k~~l~~~~~ 82 (155)
+.||+..+.++++|..+|++++| |+++++|.|+|+++++.+.||+.+....+|.+.+++.. ..
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~---~~ 77 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVF---FK 77 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch---hH
Confidence 47999999999999999999844 78899999999999999999999999999998877766 22
Q ss_pred eeeeeehhHHHHHHHHHhhhhhhHHHHHHHHcCCC------CCCcc--cChHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031666 83 LLIIVVGDWVLSILTLAAACSTASVVDLLLRAENP------YCPPK--FCSRYQISAAMAFLTWFLSMASSLFNLWL 151 (155)
Q Consensus 83 ~~l~~vGD~V~a~L~~aAAcasagvt~vL~~~d~~------~C~~~--~C~~~~~S~amAFlswf~~~~S~l~~~w~ 151 (155)
.++.++|||+.+||+++|+++++++++ +.++|.+ .|... ||+|...|++++|+++++...+++++-..
T Consensus 78 ~~~~f~~D~v~~~Ll~sa~sAA~av~~-l~~~G~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~~ 153 (154)
T TIGR01569 78 LIALFFLDLVMLALLSSGTSAAAAVAY-VGKLGNKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAIS 153 (154)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566899999999999999999999995 8888854 47763 89999999999999999999999987543
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=98.87 E-value=8.2e-08 Score=70.93 Aligned_cols=129 Identities=21% Similarity=0.247 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcc------ccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcceeeeeee
Q 031666 15 ASLSLRLGQTIFSSASLLFMSLGV------EFYSYTSFCYLVTIMGLVIPWSFTMAIVDGYSVLVKCPIRQPGVLLIIVV 88 (155)
Q Consensus 15 ~~L~LR~~q~~fa~~sl~~M~s~~------~F~s~TaF~yLVa~~~Lq~lwSl~la~~d~yall~k~~l~~~~~~~l~~v 88 (155)
-...+|+.|++++.+.+..++... .....++.-|.+++.++..++++...+.+.+. .|+.. +.......++
T Consensus 5 ~~~ilR~lq~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--~~~~~-~~~~~~~~~~ 81 (144)
T PF01284_consen 5 PSGILRILQLVFALIIFGLVASSIATGSQIYGGSPSACGFALFVAVLSFLYTLIFLLLYLFS--LKYRP-RIPWPLVEFI 81 (144)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH--Hhccc-ccccchhHHH
Confidence 456899999999999999998776 35667788899999999999999999999988 22222 2222233588
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHc-----CCCCCCcccChHHHHHHHHHHHHHHHHHHHHHH
Q 031666 89 GDWVLSILTLAAACSTASVVDLLLRA-----ENPYCPPKFCSRYQISAAMAFLTWFLSMASSLF 147 (155)
Q Consensus 89 GD~V~a~L~~aAAcasagvt~vL~~~-----d~~~C~~~~C~~~~~S~amAFlswf~~~~S~l~ 147 (155)
.|.+.+.+-+++++..+--.+ -.+. +........|+..+++.+++|++|++-..|..+
T Consensus 82 ~~~v~~il~l~a~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~l 144 (144)
T PF01284_consen 82 FDAVFAILWLAAFIALAAYLS-DHSCSNTGNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSAVL 144 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CcccccCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHC
Confidence 899999999998887664332 1111 112223336999999999999999999888753
No 4
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.76 E-value=14 Score=31.47 Aligned_cols=116 Identities=15% Similarity=0.105 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccc--------------ccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcc
Q 031666 16 SLSLRLGQTIFSSASLLFMSLGVEF--------------YSYTSFCYLVTIMGLVIPWSFTMAIVDGYSVLVKCPIRQPG 81 (155)
Q Consensus 16 ~L~LR~~q~~fa~~sl~~M~s~~~F--------------~s~TaF~yLVa~~~Lq~lwSl~la~~d~yall~k~~l~~~~ 81 (155)
..++|+..++|+++-+.-..+ .+| .+-.+=.|=+++-.+..+=++....+|+|-=......-+++
T Consensus 25 ~ti~R~~~~lFsliVf~si~~-eGy~n~~~~~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~~f~qISsv~~Rkr 103 (233)
T KOG4016|consen 25 QTILRVVSWLFSLIVFGSIVN-EGYLNSASSGEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDVYFPQISSVKDRKR 103 (233)
T ss_pred hhHHHHHHHHHHHhheeeecc-ccccCcccCCceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHH
Confidence 468999999999887664433 332 23344458899999999999999999999433322222223
Q ss_pred eeeeeeehhHHHHHH----HHHhhhh---hhHHHHHHHHcCCCCCCcc--cChHHHHHHHHHHHHHHHHHHHH
Q 031666 82 VLLIIVVGDWVLSIL----TLAAACS---TASVVDLLLRAENPYCPPK--FCSRYQISAAMAFLTWFLSMASS 145 (155)
Q Consensus 82 ~~~l~~vGD~V~a~L----~~aAAca---sagvt~vL~~~d~~~C~~~--~C~~~~~S~amAFlswf~~~~S~ 145 (155)
. +.+|.+++-| -|-+=|- .-.++ ++ ++| .-+..+++|+++|+|.+.-..-+
T Consensus 104 a----Vl~Dl~~SalwtflwfvGFc~l~nqwqvs-----~p----~~~~~~a~saraaIafsffSilsW~~~A 163 (233)
T KOG4016|consen 104 A----VLADLGVSALWAFLWFVGFCFLANQWQVS-----KP----KENPLGAGSARAAIAFSFFSILSWGGQA 163 (233)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----CC----CCCCcCcchHHHHHHHHHHHHHHHHHHH
Confidence 2 3345544322 1222221 11222 22 444 37799999999887755544433
No 5
>PF12304 BCLP: Beta-casein like protein; InterPro: IPR020977 This entry represents eukaryotic proteins that are typically between 216 to 240 amino acids in length which have two conserved sequence motifs: VLR and TRIY. Beta-casein-like protein is associated with cell morphology and a regulation of growth pattern of tumours. It is found in adenocarcinomas of uterine cervical tissues[].
Probab=43.88 E-value=1.9e+02 Score=24.10 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCCCc-ceeeeeeehhHHHHHHHHHhhhh-----hhHHHHHHHHcC-----------
Q 031666 53 MGLVIPWSFTMAIVDGYSVLVKCPIRQP-GVLLIIVVGDWVLSILTLAAACS-----TASVVDLLLRAE----------- 115 (155)
Q Consensus 53 ~~Lq~lwSl~la~~d~yall~k~~l~~~-~~~~l~~vGD~V~a~L~~aAAca-----sagvt~vL~~~d----------- 115 (155)
+++...=.+.-....|-+++..|.++++ -.|.+++.+ . .-.++++||+ +..+| +- ++|
T Consensus 44 Niisv~Sgll~I~~GI~AIvlSrnl~~~~L~W~Ll~~S-~--ln~LlSaAc~vGL~~ai~~T-v~-~~Gr~Ll~~C~f~~ 118 (188)
T PF12304_consen 44 NIISVTSGLLSIICGIVAIVLSRNLRNRPLHWTLLVVS-L--LNALLSAACAVGLLLAISLT-VA-NQGRNLLAGCNFTN 118 (188)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhccCCCCcchHHHHHHH-H--HHHHHHHHHHHHHHHHHHHH-HH-hCchhHhhcCCCCC
Confidence 4343333334445566677777777776 445544332 2 2345677776 33344 22 222
Q ss_pred -------CCCCCcccChHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031666 116 -------NPYCPPKFCSRYQISAAMAFLTWFLSMASSLFNLWLL 152 (155)
Q Consensus 116 -------~~~C~~~~C~~~~~S~amAFlswf~~~~S~l~~~w~l 152 (155)
-+.||.++++=|.++.++=+.+-++.+.=+.+++|-.
T Consensus 119 ~~~~~~it~dCPFDpTRIY~TtL~LW~ps~ll~~~EavfS~rCf 162 (188)
T PF12304_consen 119 LNALSSITNDCPFDPTRIYDTTLALWIPSILLSAVEAVFSVRCF 162 (188)
T ss_pred hhhccCCCCCCCCCcchHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2379999999999999999999999998888888753
No 6
>PF07188 KSHV_K8: Kaposi's sarcoma-associated herpesvirus (KSHV) K8 protein; InterPro: IPR010805 This family consists of Human herpesvirus 8 (HHV-8, Kaposi's sarcoma-associated herpesvirus) K8 proteins. HHV-8 is a human Gammaherpesvirus related to Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) and Saimiriine herpesvirus 2 (Herpesvirus saimiri). HHV-8 open reading frame K8 encodes a basic region-leucine zipper protein of 237 aa that homodimerises. K8 interacts and co-localises with human SNF5 (IPR006939 from INTERPRO), a cellular chromatin-remodelling factor, both in vivo and in vitro. K8 is thought to function as a transcriptional activator under specific conditions and its transactivation activity requires its interaction with the cellular chromatin remodelling factor hSNF5 [].
Probab=17.40 E-value=72 Score=26.42 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=11.3
Q ss_pred CccccCCC--CCCCCch
Q 031666 1 MATENQVP--GSVGTSA 15 (155)
Q Consensus 1 ~~~m~~~~--G~~Gt~~ 15 (155)
|-||||+| .+|||-.
T Consensus 1 mprmkdiptksspgtdn 17 (238)
T PF07188_consen 1 MPRMKDIPTKSSPGTDN 17 (238)
T ss_pred CCccccCCCCCCCCCCc
Confidence 67899988 6777754
No 7
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=16.74 E-value=15 Score=38.18 Aligned_cols=22 Identities=41% Similarity=0.394 Sum_probs=16.4
Q ss_pred eehhHHHHHHHHHhhhhhhHHH
Q 031666 87 VVGDWVLSILTLAAACSTASVV 108 (155)
Q Consensus 87 ~vGD~V~a~L~~aAAcasagvt 108 (155)
.=+|-|+++|+|.||||+++++
T Consensus 882 ~~~D~vtailSLGAAaA~a~~t 903 (1289)
T PF06016_consen 882 TPFDAVTAILSLGAAAASANVT 903 (1289)
T ss_dssp ---SEEEECTCHHHHHHHCT--
T ss_pred CCCCEEEEEeeehhhhhcCCCc
Confidence 3458899999999999999998
No 8
>TIGR03068 srtB_sig_NPQTN sortase B signal domain, NPQTN class. This model represents one of the boutique (rare) sortase signals, recognized by sortase B (SrtB) rather than by the housekeeping-type SrtA class sortase. This sequence, beginning NPQTN, shows little similarity to several other SrtB substrates.
Probab=14.39 E-value=2.7e+02 Score=17.04 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=17.7
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHH
Q 031666 41 YSYTSFCYLVTIMGLVIPWSFTMA 64 (155)
Q Consensus 41 ~s~TaF~yLVa~~~Lq~lwSl~la 64 (155)
....+|.|++...++..+.+..+.
T Consensus 6 ~gtp~y~y~Ip~v~lflL~~~~i~ 29 (33)
T TIGR03068 6 AGTPAYIYAIPVASLALLIAITLF 29 (33)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHH
Confidence 356679999999887777766543
No 9
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=12.48 E-value=5.5e+02 Score=24.68 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=31.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHH
Q 031666 14 SASLSLRLGQTIFSSASLLFMSLGVEFYSYTSFCYLVTIMGLVIPW 59 (155)
Q Consensus 14 ~~~L~LR~~q~~fa~~sl~~M~s~~~F~s~TaF~yLVa~~~Lq~lw 59 (155)
+.|..++..-...+...+++|.+.. .+-+.|-||+++.++...-
T Consensus 370 r~GvP~~al~vt~~fg~lafl~~~~--~~~~vf~wL~~isg~s~~i 413 (541)
T COG0833 370 RRGVPLVALLVTLLFGLLAFLNSSF--KETTVFNWLLNISGLSGFI 413 (541)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHHH
Confidence 4555566666666666666666555 6777999999999987763
No 10
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=11.59 E-value=45 Score=21.49 Aligned_cols=9 Identities=44% Similarity=0.320 Sum_probs=7.0
Q ss_pred eeeehhHHH
Q 031666 85 IIVVGDWVL 93 (155)
Q Consensus 85 l~~vGD~V~ 93 (155)
..++||||.
T Consensus 37 ~~~VGD~V~ 45 (68)
T cd04466 37 PPAVGDRVE 45 (68)
T ss_pred CCCCCcEEE
Confidence 358999984
Done!