Query 031666
Match_columns 155
No_of_seqs 111 out of 132
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 05:19:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyl_W VP1; non-enveloped viru 12.1 13 0.00044 37.2 -3.9 21 88-108 889-909 (1299)
2 4h31_A Otcase, ornithine carba 10.7 1.4E+02 0.0049 25.2 2.6 30 62-91 161-190 (358)
3 1ej6_A Lambda2; icosahedral, n 8.6 17 0.0006 36.2 -4.3 22 87-108 881-902 (1289)
4 3l1l_A Arginine/agmatine antip 8.2 6.8E+02 0.023 19.9 5.7 33 44-76 348-380 (445)
5 1g4d_A Repressor protein C; pr 7.6 1.9E+02 0.0067 18.9 1.7 16 6-21 12-27 (69)
6 1ckk_B Camkk, protein (RAT Ca2 6.5 2.8E+02 0.0096 15.3 1.7 14 67-80 12-25 (26)
7 1tns_A MU-transposase; DNA-bin 6.1 2.5E+02 0.0084 18.8 1.7 15 6-20 12-26 (76)
8 4a8t_A Putrescine carbamoyltra 6.0 3.1E+02 0.011 23.1 2.6 27 62-91 154-184 (339)
9 4a8p_A Putrescine carbamoyltra 5.9 3.2E+02 0.011 23.3 2.6 27 62-91 132-162 (355)
10 1iq5_B Ca2+/calmodulin depende 5.7 3.2E+02 0.011 15.1 1.7 14 67-80 12-25 (27)
No 1
>3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_A
Probab=12.09 E-value=13 Score=37.25 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=18.6
Q ss_pred ehhHHHHHHHHHhhhhhhHHH
Q 031666 88 VGDWVLSILTLAAACSTASVV 108 (155)
Q Consensus 88 vGD~V~a~L~~aAAcasagvt 108 (155)
=+|-|+++|++.||||+++++
T Consensus 889 ~~d~vtailSLGAA~a~a~~t 909 (1299)
T 3iyl_W 889 RCDSATAIFTIGAAAAAAGTD 909 (1299)
T ss_dssp CCSEEEETTTHHHHHHHTTCC
T ss_pred CCCEEEEeeechhhhhhCCCc
Confidence 458889999999999999887
No 2
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=10.71 E-value=1.4e+02 Score=25.20 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=20.1
Q ss_pred HHHHHhhhhhhhcCCCCCcceeeeeeehhH
Q 031666 62 TMAIVDGYSVLVKCPIRQPGVLLIIVVGDW 91 (155)
Q Consensus 62 ~la~~d~yall~k~~l~~~~~~~l~~vGD~ 91 (155)
+|++.|.|.+...+..+.-.-+.+-++||.
T Consensus 161 tQaL~Dl~Ti~e~~~~~~l~gl~ia~vGD~ 190 (358)
T 4h31_A 161 TQILADFLTMLEHSQGKALADIQFAYLGDA 190 (358)
T ss_dssp HHHHHHHHHHHHTTTTCCGGGCEEEEESCT
T ss_pred hHHHHHHHHHHHHhcCCCcCceEEEecCCC
Confidence 689999999987543222223455689995
No 3
>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U
Probab=8.57 E-value=17 Score=36.24 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=19.4
Q ss_pred eehhHHHHHHHHHhhhhhhHHH
Q 031666 87 VVGDWVLSILTLAAACSTASVV 108 (155)
Q Consensus 87 ~vGD~V~a~L~~aAAcasagvt 108 (155)
.=+|-|++++++.||||.+++|
T Consensus 881 ~~~D~vt~i~SLGAA~A~a~~t 902 (1289)
T 1ej6_A 881 VRGDIVTCMLSLGAAAAGKSMT 902 (1289)
T ss_dssp CCCSEEEECSCHHHHHHHHTCC
T ss_pred CCCcEEEEEeechhhhhccCCc
Confidence 4568899999999999999877
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=8.16 E-value=6.8e+02 Score=19.94 Aligned_cols=33 Identities=3% Similarity=-0.104 Sum_probs=24.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcCC
Q 031666 44 TSFCYLVTIMGLVIPWSFTMAIVDGYSVLVKCP 76 (155)
Q Consensus 44 TaF~yLVa~~~Lq~lwSl~la~~d~yall~k~~ 76 (155)
+.|-+++.......+.+..+...-...++.|++
T Consensus 348 ~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 348 KEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 567778877777777777777777777777776
No 5
>1g4d_A Repressor protein C; protein/DNA complex, helix-turn-helix, winged-helix, bacteriophage MU; NMR {Enterobacteria phage MU} SCOP: a.6.1.7 PDB: 1qpm_A
Probab=7.61 E-value=1.9e+02 Score=18.86 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=12.1
Q ss_pred CCCCCCCCchhHHHHH
Q 031666 6 QVPGSVGTSASLSLRL 21 (155)
Q Consensus 6 ~~~G~~Gt~~~L~LR~ 21 (155)
++||+|.|..|+-.|.
T Consensus 12 ~l~glP~s~~gi~~~A 27 (69)
T 1g4d_A 12 AADGMPGSVAGVHYRA 27 (69)
T ss_dssp TSTTSCSSHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHH
Confidence 6789999988875543
No 6
>1ckk_B Camkk, protein (RAT Ca2+/calmodulin dependent protein kinase); complex (calmodulin/peptide), calmodulin-peptide complex; NMR {Rattus norvegicus}
Probab=6.48 E-value=2.8e+02 Score=15.26 Aligned_cols=14 Identities=29% Similarity=0.147 Sum_probs=10.3
Q ss_pred hhhhhhhcCCCCCc
Q 031666 67 DGYSVLVKCPIRQP 80 (155)
Q Consensus 67 d~yall~k~~l~~~ 80 (155)
-+=+++.||+++||
T Consensus 12 lvk~Mlr~~sf~nP 25 (26)
T 1ckk_B 12 LVKSMLRKRSFGNP 25 (26)
T ss_dssp HHHHHCSSSCCCCC
T ss_pred HHHHHhhcccccCC
Confidence 34567888888887
No 7
>1tns_A MU-transposase; DNA-binding protein; NMR {Enterobacteria phage MU} SCOP: a.6.1.7 PDB: 1tnt_A
Probab=6.09 E-value=2.5e+02 Score=18.79 Aligned_cols=15 Identities=33% Similarity=0.383 Sum_probs=11.3
Q ss_pred CCCCCCCCchhHHHH
Q 031666 6 QVPGSVGTSASLSLR 20 (155)
Q Consensus 6 ~~~G~~Gt~~~L~LR 20 (155)
++||+|.|..|+-.|
T Consensus 12 ~l~gLP~s~~gi~~~ 26 (76)
T 1tns_A 12 NLPGLPKTSAGVIYV 26 (76)
T ss_dssp TCSSSCSSHHHHHHH
T ss_pred cCCCCCCCHHHHHHH
Confidence 567888888887554
No 8
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=6.02 E-value=3.1e+02 Score=23.07 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=19.9
Q ss_pred HHHHHhhhhhhhcC----CCCCcceeeeeeehhH
Q 031666 62 TMAIVDGYSVLVKC----PIRQPGVLLIIVVGDW 91 (155)
Q Consensus 62 ~la~~d~yall~k~----~l~~~~~~~l~~vGD~ 91 (155)
+|++.|.|.+..++ ++... .+-++||.
T Consensus 154 tQaLaDl~Ti~e~~~~G~~l~gl---kva~vGD~ 184 (339)
T 4a8t_A 154 TQELGDLCTMVEHLPEGKKLEDC---KVVFVGDA 184 (339)
T ss_dssp HHHHHHHHHHHHTCCTTCCGGGC---EEEEESSC
T ss_pred HHHHHHHHHHHHHhhcCCCCCCC---EEEEECCC
Confidence 68999999999887 34433 34479996
No 9
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=5.90 E-value=3.2e+02 Score=23.26 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=19.9
Q ss_pred HHHHHhhhhhhhcC----CCCCcceeeeeeehhH
Q 031666 62 TMAIVDGYSVLVKC----PIRQPGVLLIIVVGDW 91 (155)
Q Consensus 62 ~la~~d~yall~k~----~l~~~~~~~l~~vGD~ 91 (155)
+|++.|.|.+..++ ++.+ ..+-++||.
T Consensus 132 tQaLaDl~TI~E~~~~G~~l~g---lkva~vGD~ 162 (355)
T 4a8p_A 132 TQELGDLCTMVEHLPEGKKLED---CKVVFVGDA 162 (355)
T ss_dssp HHHHHHHHHHHHTCCTTCCGGG---CEEEEESCC
T ss_pred HHHHHHHHHHHHHhhcCCCCCC---CEEEEECCC
Confidence 68999999999887 3433 334479996
No 10
>1iq5_B Ca2+/calmodulin dependent kinase kinase; EF-hand, protein-peptide complex, metal binding protein/protein binding complex; 1.80A {Xenopus laevis}
Probab=5.72 E-value=3.2e+02 Score=15.14 Aligned_cols=14 Identities=7% Similarity=-0.135 Sum_probs=10.7
Q ss_pred hhhhhhhcCCCCCc
Q 031666 67 DGYSVLVKCPIRQP 80 (155)
Q Consensus 67 d~yall~k~~l~~~ 80 (155)
-+=+++.||+++||
T Consensus 12 lvk~Ml~~~sf~nP 25 (27)
T 1iq5_B 12 LVKAMGHRKRFGNP 25 (27)
T ss_dssp HHHHHHHHTSSSCS
T ss_pred HHHHHHhcccccCC
Confidence 34567888999887
Done!