Query 031666
Match_columns 155
No_of_seqs 111 out of 132
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 05:19:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031666.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031666hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qpma_ a.6.1.7 (A:) mu transp 18.5 26 0.0019 21.9 1.7 16 6-21 12-27 (69)
2 d1tnsa_ a.6.1.7 (A:) mu transp 13.8 39 0.0028 21.3 1.7 15 6-20 12-26 (76)
3 d1t4ba2 d.81.1.1 (A:134-354) A 13.4 13 0.00095 27.8 -1.0 26 67-92 193-218 (221)
4 d2hjsa2 d.81.1.1 (A:130-319) U 8.7 19 0.0014 26.3 -1.5 26 67-92 162-187 (190)
5 d1u19a_ f.13.1.2 (A:) Rhodopsi 8.0 2.2E+02 0.016 19.7 4.4 30 65-94 56-87 (348)
6 d1mb4a2 d.81.1.1 (A:133-354) A 6.6 22 0.0016 26.6 -2.1 26 67-92 194-219 (222)
7 d2c4fl1 g.3.11.1 (L:46-82) Fac 6.3 54 0.004 17.5 0.1 12 115-126 1-12 (37)
8 d1edmb_ g.3.11.1 (B:) Factor I 5.6 98 0.0071 16.5 1.0 12 115-126 2-13 (39)
9 d1t9ha1 b.40.4.5 (A:1-67) Prob 5.6 29 0.0021 21.0 -1.6 19 72-92 30-48 (67)
10 d1uxya1 d.145.1.2 (A:3-200) Ur 4.3 1.3E+02 0.0095 21.1 1.1 14 4-17 102-115 (198)
No 1
>d1qpma_ a.6.1.7 (A:) mu transposase, DNA-binding domain {Bacteriophage mu [TaxId: 10677]}
Probab=18.54 E-value=26 Score=21.88 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.0
Q ss_pred CCCCCCCCchhHHHHH
Q 031666 6 QVPGSVGTSASLSLRL 21 (155)
Q Consensus 6 ~~~G~~Gt~~~L~LR~ 21 (155)
++||+|+|..|+-.|.
T Consensus 12 gLpglP~s~~gv~~~A 27 (69)
T d1qpma_ 12 AADGMPGSVAGVHYRA 27 (69)
T ss_dssp TSTTSCSSHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHH
Confidence 6899999999887553
No 2
>d1tnsa_ a.6.1.7 (A:) mu transposase, DNA-binding domain {Bacteriophage mu [TaxId: 10677]}
Probab=13.80 E-value=39 Score=21.34 Aligned_cols=15 Identities=33% Similarity=0.383 Sum_probs=12.0
Q ss_pred CCCCCCCCchhHHHH
Q 031666 6 QVPGSVGTSASLSLR 20 (155)
Q Consensus 6 ~~~G~~Gt~~~L~LR 20 (155)
++||+|+|..|+-.|
T Consensus 12 gLpglP~s~~gv~~~ 26 (76)
T d1tnsa_ 12 NLPGLPKTSAGVIYV 26 (76)
T ss_dssp TCSSSCSSHHHHHHH
T ss_pred cCCCCCCCHHHHHHH
Confidence 689999999887654
No 3
>d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=13.43 E-value=13 Score=27.85 Aligned_cols=26 Identities=19% Similarity=0.079 Sum_probs=20.4
Q ss_pred hhhhhhhcCCCCCcceeeeeeehhHH
Q 031666 67 DGYSVLVKCPIRQPGVLLIIVVGDWV 92 (155)
Q Consensus 67 d~yall~k~~l~~~~~~~l~~vGD~V 92 (155)
++|--+.|++..++..++++++||++
T Consensus 193 ~V~VGRIR~D~~~~~~l~lw~v~DNL 218 (221)
T d1t4ba2 193 TTPVGRLRKLNMGPEFLSAFTVGDQL 218 (221)
T ss_dssp CCCEEEEEECTTCTTEEEEEEEEETT
T ss_pred CeEEecccccCCCCCEEEEEEEeccc
Confidence 45555667778888899999999985
No 4
>d2hjsa2 d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.67 E-value=19 Score=26.26 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=20.2
Q ss_pred hhhhhhhcCCCCCcceeeeeeehhHH
Q 031666 67 DGYSVLVKCPIRQPGVLLIIVVGDWV 92 (155)
Q Consensus 67 d~yall~k~~l~~~~~~~l~~vGD~V 92 (155)
++|--+.|++..++..+.++++||++
T Consensus 162 ~v~VGRiR~d~~~~~~l~~w~v~Dnl 187 (190)
T d2hjsa2 162 ETYVGRVRAGQADPCQVNLWIVSDNV 187 (190)
T ss_dssp CEEEEEEEECSSCTTEEEEEEEECCC
T ss_pred CEEEEeeEcCCCCCCEEEEEEEeCCc
Confidence 45555667778888889999999974
No 5
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.96 E-value=2.2e+02 Score=19.67 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=16.1
Q ss_pred HHhhhhhhhcCCCCCcceeeee--eehhHHHH
Q 031666 65 IVDGYSVLVKCPIRQPGVLLII--VVGDWVLS 94 (155)
Q Consensus 65 ~~d~yall~k~~l~~~~~~~l~--~vGD~V~a 94 (155)
++=++.+..+|.+|++....+. .+.|-..+
T Consensus 56 ~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~ 87 (348)
T d1u19a_ 56 FLTLYVTVQHKKLRTPLNYILLNLAVADLFMV 87 (348)
T ss_dssp HHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHeehhhhccCCCCCHhHHHHHHHHHHHHHHH
Confidence 3445666666677766433322 55665543
No 6
>d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}
Probab=6.63 E-value=22 Score=26.57 Aligned_cols=26 Identities=15% Similarity=-0.024 Sum_probs=19.0
Q ss_pred hhhhhhhcCCCCCcceeeeeeehhHH
Q 031666 67 DGYSVLVKCPIRQPGVLLIIVVGDWV 92 (155)
Q Consensus 67 d~yall~k~~l~~~~~~~l~~vGD~V 92 (155)
|+|--+.|++...+..+.++++||++
T Consensus 194 ~V~VGRiR~d~~~~~~l~~wvv~DNL 219 (222)
T d1mb4a2 194 SVPVGRLRKMAMGDDFLNAFTVGDQL 219 (222)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred ceeeecCEecCCCCCEEEEEEEeccc
Confidence 34545556666677889999999985
No 7
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}
Probab=6.32 E-value=54 Score=17.53 Aligned_cols=12 Identities=17% Similarity=0.589 Sum_probs=8.0
Q ss_pred CCCCCCcccChH
Q 031666 115 ENPYCPPKFCSR 126 (155)
Q Consensus 115 d~~~C~~~~C~~ 126 (155)
|.+.|..|+|..
T Consensus 1 D~d~C~~~PC~n 12 (37)
T d2c4fl1 1 DGDQCASSPCQN 12 (37)
T ss_dssp TCCGGGGCCCCT
T ss_pred CcccCCCCCCCC
Confidence 456777777753
No 8
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.65 E-value=98 Score=16.53 Aligned_cols=12 Identities=17% Similarity=0.523 Sum_probs=8.4
Q ss_pred CCCCCCcccChH
Q 031666 115 ENPYCPPKFCSR 126 (155)
Q Consensus 115 d~~~C~~~~C~~ 126 (155)
|.+.|..++|.+
T Consensus 2 d~d~C~~~PC~n 13 (39)
T d1edmb_ 2 DGDQCESNPCLN 13 (39)
T ss_dssp CCCTTTTCCCCT
T ss_pred ccccCCCCCCCC
Confidence 556788887754
No 9
>d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=5.55 E-value=29 Score=21.03 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=10.0
Q ss_pred hhcCCCCCcceeeeeeehhHH
Q 031666 72 LVKCPIRQPGVLLIIVVGDWV 92 (155)
Q Consensus 72 l~k~~l~~~~~~~l~~vGD~V 92 (155)
..|-.+++...- .+|||+|
T Consensus 30 ~~RGk~r~~~~~--p~VGD~V 48 (67)
T d1t9ha1 30 RGRGIFRKNKIT--PLVGDYV 48 (67)
T ss_dssp ESCSSCCSCCCC--CCBTCEE
T ss_pred EEceeEecCCCc--cCcCcEE
Confidence 334444444322 4589987
No 10
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.26 E-value=1.3e+02 Score=21.12 Aligned_cols=14 Identities=14% Similarity=-0.031 Sum_probs=9.8
Q ss_pred ccCCCCCCCCchhH
Q 031666 4 ENQVPGSVGTSASL 17 (155)
Q Consensus 4 m~~~~G~~Gt~~~L 17 (155)
++-+.|-|||.||.
T Consensus 102 ~E~l~gIPGtvGGa 115 (198)
T d1uxya1 102 LENLALIPGCVGSS 115 (198)
T ss_dssp CGGGTTCCSBGGGT
T ss_pred chhhcccccccchh
Confidence 44556788888875
Done!