BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031668
         (155 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VNE|A Chain A, The X-Ray Structure Of Norcoclaurine Synthase From
           Thalictrum Flavum
 pdb|2VNE|B Chain B, The X-Ray Structure Of Norcoclaurine Synthase From
           Thalictrum Flavum
 pdb|2VQ5|A Chain A, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
           Flavum In Complex With Dopamine And Hydroxybenzaldehyde
 pdb|2VQ5|B Chain B, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
           Flavum In Complex With Dopamine And Hydroxybenzaldehyde
          Length = 201

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 70/153 (45%), Gaps = 4/153 (2%)

Query: 5   VSHELEVNVPAAQAWELYGTIKLAKLVEKESXXXXXXXXXXXXXXXXXXLHLKFTPGTPG 64
           + HELEV   A   W +Y    LAK +                      L   F PG   
Sbjct: 31  IHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEIIGDGGVGTILDXTFVPGE-- 88

Query: 65  FAG-YKEKFIEIDNERRVKVTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYEL 123
           F   YKEKFI +DNE R+K    +EGGYLD+G T +     ++  G DSC+I+S  EY +
Sbjct: 89  FPHEYKEKFILVDNEHRLKKVQXIEGGYLDLGVTYYXDTIHVVPTGKDSCVIKSSTEYHV 148

Query: 124 KEE-AAANASFVSTDAVAKIAEMAKNYLLNNKA 155
           K E        ++T  +A  A+     +L +K+
Sbjct: 149 KPEFVKIVEPLITTGPLAAXADAISKLVLEHKS 181


>pdb|3US7|A Chain A, Crystal Structure Of Phytohormone Binding Protein From
           Medicago Truncatula In Complex With Gibberellic Acid
           (Ga3)
          Length = 156

 Score = 30.4 bits (67), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 18/73 (24%), Positives = 29/73 (39%)

Query: 54  LHLKFTPGTPGFAGYKEKFIEIDNERRVKVTDAVEGGYLDVGFTLFRVIFEIIEKGSDSC 113
           L   F PG       +E   E D          VEGGYL+ G + ++  F+      +  
Sbjct: 54  LIFNFLPGIAPVNYQREVITEYDELSHTIGLQVVEGGYLNQGLSYYKTTFQFSAISENKT 113

Query: 114 IIRSIIEYELKEE 126
           ++   I Y+ + E
Sbjct: 114 LVNVKISYDHESE 126


>pdb|2FLH|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
           From Mung Bean In Complex With Cytokinin
 pdb|2FLH|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
           From Mung Bean In Complex With Cytokinin
 pdb|2FLH|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
           From Mung Bean In Complex With Cytokinin
 pdb|2FLH|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
           From Mung Bean In Complex With Cytokinin
 pdb|3C0V|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein In
           Complex With Cytokinin And Ta6br12
 pdb|3C0V|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein In
           Complex With Cytokinin And Ta6br12
 pdb|3C0V|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein In
           Complex With Cytokinin And Ta6br12
 pdb|3C0V|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein In
           Complex With Cytokinin And Ta6br12
          Length = 155

 Score = 29.3 bits (64), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 69  KEKFIEIDNERRVKVTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYE 122
           +E+  E D          +EGGYL  G + ++  F++ E   D  ++   I Y+
Sbjct: 68  REEITEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYD 121


>pdb|2HYJ|A Chain A, The Crystal Structure Of A Tetr-Family Transcriptional
           Regulator From Streptomyces Coelicolor
          Length = 200

 Score = 27.3 bits (59), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 80  RVKVTDAVEGGYLDVGFTLFRVIFEIIEKG 109
           R  +T AV+ G L  GF + + +FEI+  G
Sbjct: 141 RADLTAAVDKGELPAGFDVEQALFEIVAAG 170


>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
 pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
          Length = 191

 Score = 25.8 bits (55), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 76  DNERRVKVTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEE 126
           D E R K  +A   G  DV      V  ++  KG D   I+ +I Y++ EE
Sbjct: 89  DQEERTKAIEAFREGKKDV-----LVATDVASKGLDFPAIQHVINYDMPEE 134


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.134    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,977,624
Number of Sequences: 62578
Number of extensions: 128818
Number of successful extensions: 214
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 203
Number of HSP's gapped (non-prelim): 12
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)