Query 031668
Match_columns 155
No_of_seqs 101 out of 874
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:44:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031668.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031668hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 8.9E-42 1.9E-46 254.4 18.3 148 1-153 2-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 3.8E-37 8.3E-42 228.2 19.8 146 3-152 1-147 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 4.8E-17 1E-21 116.1 15.6 136 4-150 2-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.7 7.3E-14 1.6E-18 99.6 20.1 105 4-123 3-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.5 1.1E-12 2.3E-17 95.1 15.5 133 5-149 1-141 (144)
6 cd08861 OtcD1_ARO-CYC_like N-t 99.4 7.6E-12 1.6E-16 90.3 14.2 112 5-126 1-113 (142)
7 cd08865 SRPBCC_10 Ligand-bindi 99.4 1.4E-11 3.1E-16 87.5 14.7 106 5-123 1-108 (140)
8 cd07819 SRPBCC_2 Ligand-bindin 99.4 4E-11 8.8E-16 85.7 16.9 110 3-125 2-114 (140)
9 cd07813 COQ10p_like Coenzyme Q 99.3 2.7E-11 5.8E-16 87.5 12.5 130 6-150 2-135 (138)
10 cd07822 SRPBCC_4 Ligand-bindin 99.3 3.7E-10 8.1E-15 80.3 16.6 110 5-124 2-112 (141)
11 cd08862 SRPBCC_Smu440-like Lig 99.3 4.5E-10 9.9E-15 80.1 15.9 106 4-124 2-108 (138)
12 cd07825 SRPBCC_7 Ligand-bindin 99.3 4.3E-10 9.4E-15 81.3 14.9 137 5-150 2-143 (144)
13 cd07812 SRPBCC START/RHO_alpha 99.2 6.1E-10 1.3E-14 77.1 14.3 110 6-126 2-113 (141)
14 cd07814 SRPBCC_CalC_Aha1-like 99.2 1.8E-09 3.8E-14 77.0 13.6 110 5-125 2-112 (139)
15 cd07818 SRPBCC_1 Ligand-bindin 99.1 6.1E-09 1.3E-13 75.8 15.9 112 4-126 3-119 (150)
16 cd08860 TcmN_ARO-CYC_like N-te 99.1 5.9E-09 1.3E-13 77.1 15.4 112 4-127 2-116 (146)
17 cd05018 CoxG Carbon monoxide d 99.1 5.3E-09 1.1E-13 75.0 14.4 112 4-125 2-114 (144)
18 cd07824 SRPBCC_6 Ligand-bindin 99.1 1.3E-08 2.7E-13 74.5 16.1 108 5-125 3-113 (146)
19 cd07820 SRPBCC_3 Ligand-bindin 99.1 6.5E-09 1.4E-13 75.2 12.5 108 5-124 1-112 (137)
20 cd07817 SRPBCC_8 Ligand-bindin 99.0 1.4E-08 3E-13 72.5 13.8 106 5-126 2-108 (139)
21 PF03364 Polyketide_cyc: Polyk 99.0 7.3E-08 1.6E-12 68.5 14.5 103 11-126 1-106 (130)
22 cd07823 SRPBCC_5 Ligand-bindin 98.9 1.5E-07 3.3E-12 68.7 13.9 112 6-126 2-116 (146)
23 PRK10724 hypothetical protein; 98.8 2.7E-07 5.8E-12 69.2 13.2 108 4-124 16-124 (158)
24 COG3427 Carbon monoxide dehydr 98.7 3E-07 6.6E-12 68.0 10.8 112 5-125 3-114 (146)
25 cd07826 SRPBCC_CalC_Aha1-like_ 98.5 4.3E-06 9.3E-11 61.0 13.1 139 5-152 2-142 (142)
26 cd08894 SRPBCC_CalC_Aha1-like_ 98.5 3.8E-06 8.2E-11 60.8 12.5 135 5-151 2-138 (139)
27 PF06240 COXG: Carbon monoxide 98.5 8.2E-06 1.8E-10 59.6 12.8 108 8-125 2-110 (140)
28 cd08898 SRPBCC_CalC_Aha1-like_ 98.4 4.1E-06 8.8E-11 60.2 10.9 136 4-151 2-144 (145)
29 cd08900 SRPBCC_CalC_Aha1-like_ 98.4 4.4E-05 9.4E-10 55.4 15.8 137 5-151 2-142 (143)
30 cd08896 SRPBCC_CalC_Aha1-like_ 98.4 2.7E-05 5.7E-10 56.8 14.7 139 5-151 2-145 (146)
31 cd08895 SRPBCC_CalC_Aha1-like_ 98.4 4.3E-05 9.2E-10 55.7 15.4 137 4-151 1-145 (146)
32 cd08899 SRPBCC_CalC_Aha1-like_ 98.3 2E-05 4.3E-10 58.4 12.5 126 4-153 12-138 (157)
33 cd08897 SRPBCC_CalC_Aha1-like_ 98.2 0.00012 2.5E-09 52.6 13.1 128 4-151 1-132 (133)
34 cd08891 SRPBCC_CalC Ligand-bin 98.1 0.00012 2.7E-09 53.4 12.9 135 5-151 2-148 (149)
35 cd08893 SRPBCC_CalC_Aha1-like_ 98.1 0.00011 2.4E-09 52.0 12.2 132 4-150 1-134 (136)
36 COG5637 Predicted integral mem 98.1 2.1E-05 4.6E-10 60.0 8.2 108 4-126 71-179 (217)
37 cd08876 START_1 Uncharacterize 98.1 0.00049 1.1E-08 52.3 15.9 119 4-126 42-169 (195)
38 cd08901 SRPBCC_CalC_Aha1-like_ 97.8 0.00069 1.5E-08 48.8 11.4 129 5-152 2-132 (136)
39 COG3832 Uncharacterized conser 97.8 0.0014 3E-08 48.4 13.3 136 2-151 7-148 (149)
40 PF08327 AHSA1: Activator of H 97.6 0.0018 3.9E-08 45.0 10.5 122 12-150 1-123 (124)
41 cd08892 SRPBCC_Aha1 Putative h 97.3 0.02 4.4E-07 40.6 13.2 97 5-123 2-101 (126)
42 cd08873 START_STARD14_15-like 97.1 0.093 2E-06 41.9 16.8 142 5-153 79-235 (235)
43 cd08863 SRPBCC_DUF1857 DUF1857 97.0 0.046 9.9E-07 40.4 13.2 120 5-147 2-132 (141)
44 COG2867 Oligoketide cyclase/li 97.0 0.0052 1.1E-07 45.5 8.1 110 4-125 3-113 (146)
45 PTZ00220 Activator of HSP-90 A 97.0 0.011 2.3E-07 42.7 9.7 122 11-151 1-127 (132)
46 PF08982 DUF1857: Domain of un 96.9 0.085 1.8E-06 39.2 14.0 121 4-147 1-134 (149)
47 PF10698 DUF2505: Protein of u 96.2 0.098 2.1E-06 38.9 10.3 109 5-124 1-128 (159)
48 cd08874 START_STARD9-like C-te 95.8 0.66 1.4E-05 36.2 14.7 118 5-127 47-179 (205)
49 cd00177 START Lipid-binding ST 94.9 1 2.3E-05 33.1 14.4 119 4-126 40-167 (193)
50 cd08913 START_STARD14-like Lip 94.6 1.9 4.2E-05 34.5 13.8 115 4-123 82-209 (240)
51 cd08905 START_STARD1-like Chol 94.4 1.8 4E-05 33.5 13.6 141 5-151 51-207 (209)
52 cd08914 START_STARD15-like Lip 94.3 2.1 4.6E-05 34.2 12.7 115 4-123 79-205 (236)
53 cd08903 START_STARD5-like Lipi 94.0 2.3 4.9E-05 33.0 14.1 139 5-150 48-205 (208)
54 cd08877 START_2 Uncharacterize 93.2 3.1 6.7E-05 32.1 13.0 139 4-150 47-212 (215)
55 COG4276 Uncharacterized conser 92.0 3.8 8.3E-05 30.2 12.5 134 3-148 2-144 (153)
56 cd08868 START_STARD1_3_like Ch 91.9 4.6 0.0001 31.0 15.9 143 5-151 50-206 (208)
57 cd08906 START_STARD3-like Chol 91.4 5.5 0.00012 30.9 15.3 139 4-150 50-206 (209)
58 cd08870 START_STARD2_7-like Li 91.3 5.6 0.00012 30.7 14.2 141 4-150 51-206 (209)
59 cd08911 START_STARD7-like Lipi 88.7 9.4 0.0002 29.4 13.0 110 5-120 47-173 (207)
60 cd08869 START_RhoGAP C-termina 88.4 9.6 0.00021 29.1 16.2 117 5-127 46-171 (197)
61 cd08871 START_STARD10-like Lip 87.3 12 0.00025 29.0 14.7 117 5-126 49-175 (222)
62 cd08867 START_STARD4_5_6-like 82.8 19 0.00041 27.5 15.1 138 4-150 47-205 (206)
63 smart00234 START in StAR and p 80.8 21 0.00046 26.8 16.7 143 4-152 46-202 (206)
64 cd08908 START_STARD12-like C-t 77.5 32 0.00069 26.8 12.1 114 4-126 53-177 (204)
65 PF01852 START: START domain; 63.1 60 0.0013 24.1 15.8 142 5-154 48-204 (206)
66 PF11687 DUF3284: Domain of un 44.9 1.1E+02 0.0023 21.5 10.9 97 7-124 3-103 (120)
67 cd08885 RHO_alpha_C_1 C-termin 38.1 1.6E+02 0.0035 21.6 6.7 44 78-122 80-123 (190)
68 cd08910 START_STARD2-like Lipi 35.3 2E+02 0.0044 22.0 13.8 116 5-126 51-179 (207)
69 cd08872 START_STARD11-like Cer 34.0 2.3E+02 0.0051 22.3 14.0 140 5-153 54-227 (235)
70 TIGR02208 lipid_A_msbB lipid A 32.1 1.1E+02 0.0023 24.9 5.0 38 116-155 248-285 (305)
71 PRK05645 lipid A biosynthesis 29.8 1.2E+02 0.0026 24.4 4.9 38 116-155 238-275 (295)
72 PRK08706 lipid A biosynthesis 26.1 1.5E+02 0.0031 23.8 4.8 38 116-155 232-269 (289)
73 PRK08733 lipid A biosynthesis 25.8 1.5E+02 0.0033 24.0 4.9 38 116-155 248-285 (306)
74 PF08803 ydhR: Putative mono-o 25.8 1.7E+02 0.0037 20.2 4.3 50 6-57 3-54 (97)
75 cd08902 START_STARD4-like Lipi 25.4 67 0.0014 25.1 2.5 38 5-46 49-87 (202)
76 PF11485 DUF3211: Protein of u 24.3 2.9E+02 0.0063 20.2 9.3 39 5-47 3-42 (136)
77 PRK06860 lipid A biosynthesis 22.9 2E+02 0.0043 23.3 5.1 38 116-155 251-288 (309)
78 TIGR02207 lipid_A_htrB lipid A 21.9 2.1E+02 0.0045 23.1 4.9 38 116-155 245-282 (303)
79 PF03279 Lip_A_acyltrans: Bact 21.3 1.9E+02 0.0041 23.0 4.6 39 115-155 246-284 (295)
80 cd07984 LPLAT_LABLAT-like Lyso 20.8 2.3E+02 0.005 20.6 4.7 38 116-155 145-182 (192)
81 KOG0301 Phospholipase A2-activ 20.7 5.9E+02 0.013 23.9 7.8 66 11-87 155-228 (745)
82 PRK08943 lipid A biosynthesis 20.5 2.3E+02 0.005 23.0 5.0 38 116-155 257-294 (314)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=8.9e-42 Score=254.40 Aligned_cols=148 Identities=32% Similarity=0.524 Sum_probs=135.5
Q ss_pred CcceEEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcc-eEEEEEecCCCCCceeEEEEEEEeecC
Q 031668 1 MKGQVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVG-TILHLKFTPGTPGFAGYKEKFIEIDNE 78 (155)
Q Consensus 1 m~~~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~G-siR~~~~~~g~~~~~~~kErl~~iD~~ 78 (155)
+.++++.|+++++||+++|++++ +.++++|++ |++|++++++||||++| |||.|+|..+ ++...+|||++.+|++
T Consensus 2 ~~~~~~~E~~~~~~a~k~~ka~~--~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~-~~~~~~Kekve~~D~~ 78 (151)
T PF00407_consen 2 GVGKLEVEVEVKVSADKLWKAFK--SSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPG-GPFKYVKEKVEAIDEE 78 (151)
T ss_dssp CEEEEEEEEEESS-HHHHHHHHT--THHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETT-SSEEEEEEEEEEEETT
T ss_pred CcEEEEEEEEecCCHHHHHHHHh--cCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCC-CCcceeEEEEEeecCC
Confidence 36889999999999999999998 688999999 99999999999998877 9999999998 7889999999999999
Q ss_pred CCeEEEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCcchhHHHHHHHHHHHHHHHhhC
Q 031668 79 RRVKVTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEAAANASFVSTDAVAKIAEMAKNYLLNN 153 (155)
Q Consensus 79 ~~~~~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~ 153 (155)
+|+++|+++||+++. .|++|.++++++|+++|+|+++|+++|++.+++. +++..+++++..|+|+||+||++|
T Consensus 79 ~~~~~y~viEGd~l~-~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~-~~p~~~~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 79 NKTITYTVIEGDVLG-DYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDV-PPPEKYLDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp TTEEEEEEEEETTGT-TTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSC-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcEEEEEEEeccccc-cEEEEEEEEEecCCCCCceEEEEEEEEEecCCCC-CCcHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999987 6999999999999999999999999999998864 333358899999999999999997
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=3.8e-37 Score=228.24 Aligned_cols=146 Identities=29% Similarity=0.494 Sum_probs=130.3
Q ss_pred ceEEEEEEecCCHHHHhhhhhcCcccc-cccccCCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCe
Q 031668 3 GQVSHELEVNVPAAQAWELYGTIKLAK-LVEKESDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRV 81 (155)
Q Consensus 3 ~~~~~e~~i~apa~kvW~~~~~~d~~~-~~p~~P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~ 81 (155)
|+++.+++|+||||+||++++ ||.+ +.+.||.+|++|++++|+|++||+|.|+|.++ +++..+||||+++|+++|+
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~~--~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~-~~~~~~kE~l~~~D~~~~~ 77 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAFV--LDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPG-GKVKYVKERIDAVDEENKT 77 (148)
T ss_pred CcEEEEEEecCCHHHHHHHHh--cChhhccccccccccEEEEEecCCCCceEEEEEEcCC-CcceEEEEEEEEEcccccE
Confidence 579999999999999999999 8885 44556447999999999999999999999988 5778999999999999999
Q ss_pred EEEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCcchhHHHHHHHHHHHHHHHhh
Q 031668 82 KVTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEAAANASFVSTDAVAKIAEMAKNYLLN 152 (155)
Q Consensus 82 ~~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~ 152 (155)
++|++++|+++.++|++|+++++|.|.++++|+++|+++|++.+++..+ +..+++.+..++++++.|++.
T Consensus 78 ~~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd07816 78 YKYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPP-EEEIKAGKEKALKMFKAVEAY 147 (148)
T ss_pred EEEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCC-HHHHHhHHHHHHHHHHHHHhc
Confidence 9999999998755699999999999998889999999999999886333 335899999999999999875
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.76 E-value=4.8e-17 Score=116.14 Aligned_cols=136 Identities=18% Similarity=0.299 Sum_probs=108.6
Q ss_pred eEEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeE
Q 031668 4 QVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVK 82 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~ 82 (155)
.++.+++|+||+++||+++. |+.+ +++| |. ++++++++++.++|+++.+.+..+ . .+++++..+|+.++.+
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~--d~~~-~~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g-~---~~~~~i~~~~~~~~~i 73 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLS--DFGG-LHKWHPA-VASCELEGGGPGVGAVRTVTLKDG-G---TVRERLLALDDAERRY 73 (140)
T ss_pred cEEEEEEECCCHHHHHHHHh--CcCc-hhhhccC-cceEEeecCCCCCCeEEEEEeCCC-C---EEEEEehhcCccCCEE
Confidence 57899999999999999998 9877 5899 96 889998776556899999998765 3 7899999999888899
Q ss_pred EEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCC-cchhHHHHHHHHHHHHHHH
Q 031668 83 VTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEAAANA-SFVSTDAVAKIAEMAKNYL 150 (155)
Q Consensus 83 ~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~-~~~~~~~~~~~~k~~e~~l 150 (155)
+|++.+|+. ++.++.++++++|.++|+|.++|+.+|++......+. ...+.+.+...++.|.++|
T Consensus 74 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 74 SYRIVEGPL---PVKNYVATIRVTPEGDGGTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred EEEecCCCC---CcccceEEEEEEECCCCccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 999988743 6788999999999888789999999999986421111 0124555666666666654
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.66 E-value=7.3e-14 Score=99.61 Aligned_cols=105 Identities=23% Similarity=0.315 Sum_probs=87.7
Q ss_pred eEEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeE
Q 031668 4 QVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVK 82 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~ 82 (155)
+++.+++|+||+++||+++. |+.+ +++| |. +.++++.+++ ++|..+.++..+. ..+++++..+|++.+.+
T Consensus 3 ~~~~~~~v~a~~e~V~~~l~--d~~~-~~~w~~~-~~~~~~~~~~-~~~~~~~~~~~g~----~~~~~~i~~~~~~~~~~ 73 (139)
T PF10604_consen 3 KVEVSIEVPAPPEAVWDLLS--DPEN-WPRWWPG-VKSVELLSGG-GPGTERTVRVAGR----GTVREEITEYDPEPRRI 73 (139)
T ss_dssp EEEEEEEESS-HHHHHHHHT--TTTG-GGGTSTT-EEEEEEEEEC-STEEEEEEEECSC----SEEEEEEEEEETTTTEE
T ss_pred EEEEEEEECCCHHHHHHHHh--Chhh-hhhhhhc-eEEEEEcccc-ccceeEEEEeccc----cceeEEEEEecCCCcEE
Confidence 78999999999999999999 9987 5899 96 8899977633 4576677776542 27999999999889999
Q ss_pred EEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEE
Q 031668 83 VTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYEL 123 (155)
Q Consensus 83 ~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~ 123 (155)
.|++. . . ++.++..+++++|.++| |.++|+.+|++
T Consensus 74 ~~~~~--~-~--~~~~~~~~~~~~~~~~g-t~v~~~~~~~~ 108 (139)
T PF10604_consen 74 TWRFV--P-S--GFTNGTGRWRFEPVGDG-TRVTWTVEFEP 108 (139)
T ss_dssp EEEEE--S-S--SSCEEEEEEEEEEETTT-EEEEEEEEEEE
T ss_pred EEEEE--e-c--ceeEEEEEEEEEEcCCC-EEEEEEEEEEE
Confidence 99996 2 2 67789999999999865 99999999998
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.52 E-value=1.1e-12 Score=95.07 Aligned_cols=133 Identities=15% Similarity=0.154 Sum_probs=90.9
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCC---CCceeEEEEEEEeecCCC
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGT---PGFAGYKEKFIEIDNERR 80 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~---~~~~~~kErl~~iD~~~~ 80 (155)
+..++.|++|+++||+++. |+.+ +|+| |. +++++++++.+. +.........+. .-...+..++.+.++.++
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~--D~~~-~~~w~p~-v~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 75 (144)
T cd08866 1 VVARVRVPAPPETVWAVLT--DYDN-LAEFIPN-LAESRLLERNGN-RVVLEQTGKQGILFFKFEARVVLELREREEFPR 75 (144)
T ss_pred CeEEEEECCCHHHHHHHHh--Chhh-HHhhCcC-ceEEEEEEcCCC-EEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCc
Confidence 3578999999999999999 9988 5999 97 899998876531 211111100000 001245566777777789
Q ss_pred eEEEEEEeCCccCcCeeEEEEEEEEEeeCC-CceEEEEEEEEEEcCCcccCCcc---hhHHHHHHHHHHHHHH
Q 031668 81 VKVTDAVEGGYLDVGFTLFRVIFEIIEKGS-DSCIIRSIIEYELKEEAAANASF---VSTDAVAKIAEMAKNY 149 (155)
Q Consensus 81 ~~~Y~v~eg~~~~~~~~~y~~t~~v~~~~~-g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~ 149 (155)
.+.|++++|+ +..|.++.++.|.++ |+|.++|...|++... .+... .....+..+++.|.+.
T Consensus 76 ~i~~~~~~g~-----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~--~p~~l~~~~~~~~~~~~l~~lr~~ 141 (144)
T cd08866 76 ELDFEMVEGD-----FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF--APVFLVEFVLRQDLPTNLLAIRAE 141 (144)
T ss_pred eEEEEEcCCc-----hhceEEEEEEEECCCCCeEEEEEEEEEEeCCC--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998764 557999999999988 6899999999998754 33322 1344444555555543
No 6
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.43 E-value=7.6e-12 Score=90.34 Aligned_cols=112 Identities=17% Similarity=0.135 Sum_probs=82.3
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeEE
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVKV 83 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~~ 83 (155)
++.+++|++|+++||+++. |+.+ +|.| |. .+++.++++++...++.+....+ +. ..-.+....+|++.+.+.
T Consensus 1 ~~~s~~i~ap~~~V~~~l~--D~~~-~p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~~~i~ 73 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLA--DAER-WPEFLPT--VHVERLELDGGVERLRMWATAFD-GS-VHTWTSRRVLDPEGRRIV 73 (142)
T ss_pred CeEEEEEcCCHHHHHHHHH--hHHh-hhccCCC--ceEEEEEEcCCEEEEEEEEEcCC-Cc-EEEEEEEEEEcCCCCEEE
Confidence 3678999999999999999 9987 5999 96 45554554332224554555423 21 122244556788899999
Q ss_pred EEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031668 84 TDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEE 126 (155)
Q Consensus 84 Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~ 126 (155)
|...++.. .+..+.++.+|+|.++++|.|+|..+|+....
T Consensus 74 ~~~~~~~~---~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~ 113 (142)
T cd08861 74 FRQEEPPP---PVASMSGEWRFEPLGGGGTRVTLRHDFTLGID 113 (142)
T ss_pred EEEeeCCC---ChhhheeEEEEEECCCCcEEEEEEEEEEECCC
Confidence 99987654 47789999999999877899999999998744
No 7
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.42 E-value=1.4e-11 Score=87.50 Aligned_cols=106 Identities=17% Similarity=0.193 Sum_probs=82.9
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCC-CCcceEEEEEecCCCCCceeEEEEEEEeecCCCeE
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGD-GGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVK 82 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGd-g~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~ 82 (155)
++.+++|+||+++||+++. |+.+ ++.| |. +.+++.+.+. .++|+...+....+ +....++++++..| .++.+
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~--d~~~-~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~-g~~~~~~~~v~~~~-p~~~~ 74 (140)
T cd08865 1 VEESIVIERPVEEVFAYLA--DFEN-APEWDPG-VVEVEKITDGPVGVGTRYHQVRKFL-GRRIELTYEITEYE-PGRRV 74 (140)
T ss_pred CceEEEEcCCHHHHHHHHH--Cccc-hhhhccC-ceEEEEcCCCCCcCccEEEEEEEec-CceEEEEEEEEEec-CCcEE
Confidence 3678999999999999999 9987 5899 97 6788866443 46788988876533 33346789999887 56889
Q ss_pred EEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEE
Q 031668 83 VTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYEL 123 (155)
Q Consensus 83 ~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~ 123 (155)
+|....++. .+..++++.+.++ +|.++|+.+|+.
T Consensus 75 ~~~~~~~~~------~~~~~~~~~~~~~-~t~v~~~~~~~~ 108 (140)
T cd08865 75 VFRGSSGPF------PYEDTYTFEPVGG-GTRVRYTAELEP 108 (140)
T ss_pred EEEecCCCc------ceEEEEEEEEcCC-ceEEEEEEEEcc
Confidence 999865432 3688999998765 699999999997
No 8
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.42 E-value=4e-11 Score=85.69 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=80.5
Q ss_pred ceEEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCC-CCcceEEEEEecCCCCCceeEEEEEEEee-cCC
Q 031668 3 GQVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGD-GGVGTILHLKFTPGTPGFAGYKEKFIEID-NER 79 (155)
Q Consensus 3 ~~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGd-g~~GsiR~~~~~~g~~~~~~~kErl~~iD-~~~ 79 (155)
-+++.+++|+||+++||+++. |+.+ +|.| |. +.++++++++ ++.+....+++..+ + ...+-+..++ +..
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l~--D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~ 73 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVLA--DVEA-YPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAY-G---IKDTYALEYTWDGA 73 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHHh--Chhh-hhhhCcc-eEEEEEeccCCCCCEEEEEEEEeee-e---EEEEEEEEEEEcCC
Confidence 468899999999999999999 9988 5999 97 8899986654 33333444555433 2 1112122232 226
Q ss_pred CeEEEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcC
Q 031668 80 RVKVTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKE 125 (155)
Q Consensus 80 ~~~~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~ 125 (155)
+.++|+..++. +...+.+++++.|.++ +|.++|+.+|++..
T Consensus 74 ~~i~~~~~~~~----~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~ 114 (140)
T cd07819 74 GSVSWTLVEGE----GNRSQEGSYTLTPKGD-GTRVTFDLTVELTV 114 (140)
T ss_pred CcEEEEEeccc----ceeEEEEEEEEEECCC-CEEEEEEEEEEecC
Confidence 78999998765 4678889999999877 79999999999854
No 9
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.35 E-value=2.7e-11 Score=87.51 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=93.4
Q ss_pred EEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeEEE
Q 031668 6 SHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVKVT 84 (155)
Q Consensus 6 ~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~~Y 84 (155)
+.+++|++|++.||+++. |..+ +|+| |+ +++++++++++ .+....+.+.-. +.......++. ++. .+++++
T Consensus 2 ~~s~~i~ap~~~v~~~i~--D~~~-~~~~~p~-~~~~~vl~~~~-~~~~~~~~~~~~-~~~~~~~~~~~-~~~-~~~i~~ 73 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVA--DVER-YPEFLPW-CTASRVLERDE-DELEAELTVGFG-GIRESFTSRVT-LVP-PESIEA 73 (138)
T ss_pred eEEEEcCCCHHHHHHHHH--HHHh-hhhhcCC-ccccEEEEcCC-CEEEEEEEEeec-cccEEEEEEEE-ecC-CCEEEE
Confidence 578999999999999999 9987 6999 97 89999988765 344445555433 22234445555 665 778899
Q ss_pred EEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCcc---hhHHHHHHHHHHHHHHH
Q 031668 85 DAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEAAANASF---VSTDAVAKIAEMAKNYL 150 (155)
Q Consensus 85 ~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~l 150 (155)
+.++|+ ++.+.++.++.|.++|+|.|+|..+|++...- +... .+.+....+++.+.+-+
T Consensus 74 ~~~~g~-----~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l--~~~l~~~~~~~~~~~~l~~f~~~~ 135 (138)
T cd07813 74 ELVDGP-----FKHLEGEWRFKPLGENACKVEFDLEFEFKSRL--LEALAGLVFDEVAKKMVDAFEKRA 135 (138)
T ss_pred EecCCC-----hhhceeEEEEEECCCCCEEEEEEEEEEECCHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988773 56789999999999889999999999997532 2111 24555555666655544
No 10
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.31 E-value=3.7e-10 Score=80.34 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=82.0
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeEE
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVKV 83 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~~ 83 (155)
++.++.|+||+++||+++. |+.+ +++| |. +..++... .++|+...+.+..+.+......+++.++|+ .+.+.
T Consensus 2 v~~~~~i~ap~~~Vw~~~~--d~~~-~~~w~~~-~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~ 74 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLT--DFPS-YPEWNPF-VRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEP-PRRLA 74 (141)
T ss_pred eEEEEEecCCHHHHHHHHh--cccc-ccccChh-heeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcC-CCEeE
Confidence 6789999999999999998 8877 5899 86 55655321 456778888775431233467888999976 57889
Q ss_pred EEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEc
Q 031668 84 TDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELK 124 (155)
Q Consensus 84 Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~ 124 (155)
|+...++. .......++.|.|.++++|.++|...|...
T Consensus 75 ~~~~~~~~---~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~ 112 (141)
T cd07822 75 WRGGLPFP---GLLDGEHSFELEPLGDGGTRFVHRETFSGL 112 (141)
T ss_pred EEecCCCC---cEeeEEEEEEEEEcCCCcEEEEEeeEEEEE
Confidence 99866654 233566789999986778999999888653
No 11
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.29 E-value=4.5e-10 Score=80.14 Aligned_cols=106 Identities=9% Similarity=0.033 Sum_probs=80.2
Q ss_pred eEEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeE
Q 031668 4 QVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVK 82 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~ 82 (155)
+++.+++|+||+++||+++. |+.+ +|.| |+ ++++++..+..++|+...++...+ . .+..++.++++. +.+
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~--d~~~-~~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~-~---~~~~~i~~~~p~-~~~ 72 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLT--DVEN-WPAWTPS-VETVRLEGPPPAVGSSFKMKPPGL-V---RSTFTVTELRPG-HSF 72 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHH--hhhh-cccccCc-ceEEEEecCCCCCCcEEEEecCCC-C---ceEEEEEEecCC-CEE
Confidence 47889999999999999999 9877 5999 96 889997654326788777765433 2 577888888754 568
Q ss_pred EEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEc
Q 031668 83 VTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELK 124 (155)
Q Consensus 83 ~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~ 124 (155)
+++... + ...+..++++.+.++++|.++|+.+|...
T Consensus 73 ~~~~~~-~-----~~~~~~~~~~~~~~~~~t~l~~~~~~~~~ 108 (138)
T cd08862 73 TWTGPA-P-----GISAVHRHEFEAKPDGGVRVTTSESLSGP 108 (138)
T ss_pred EEEecC-C-----CEEEEEEEEEEEcCCCcEEEEEEEEeecc
Confidence 887532 2 22456788888887678999999888753
No 12
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.27 E-value=4.3e-10 Score=81.27 Aligned_cols=137 Identities=11% Similarity=0.111 Sum_probs=91.7
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCC--CCcceEEEEEecCCCCCceeEEEEEEEeecCCCe
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGD--GGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRV 81 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGd--g~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~ 81 (155)
++.+++|+||+++||+++. |+.+ +|.| |.... .....++ -++|+..++..... +....+..++.++++ .+.
T Consensus 2 i~~~~~i~ap~e~Vw~~l~--d~~~-~~~W~~~~~~-~~~~~~~~~~~~G~~~~~~~~~~-g~~~~~~~~v~~~~p-~~~ 75 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLA--DPRR-HPEIDGSGTV-REAIDGPRILAVGDVFRMAMRLD-GGPYRITNHVVAFEE-NRL 75 (144)
T ss_pred eEEEEEEeCCHHHHHHHHh--Cccc-cceeCCCCcc-ccccCCCccCCCCCEEEEEEEcC-CCceEEEEEEEEECC-CCE
Confidence 6789999999999999998 9977 6899 85222 2222333 37888888876543 223356677888855 556
Q ss_pred EEEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCccc-C-CcchhHHHHHHHHHHHHHHH
Q 031668 82 KVTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEAAA-N-ASFVSTDAVAKIAEMAKNYL 150 (155)
Q Consensus 82 ~~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~-~-~~~~~~~~~~~~~k~~e~~l 150 (155)
++|+..-.+. +......++++++.++|+|.++++.+|...+.... . ........+...+..|++||
T Consensus 76 l~~~~~~~~~---~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 76 IAWRPGPAGQ---EPGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EEEEccCCCC---CCCceeEEEEEEECCCCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 9998642121 22345667888898878899999999887644211 1 11124666777778888776
No 13
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.25 E-value=6.1e-10 Score=77.08 Aligned_cols=110 Identities=18% Similarity=0.264 Sum_probs=86.0
Q ss_pred EEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCC-CCcceEEEEEecCCCCCceeEEEEEEEeecCCCeEE
Q 031668 6 SHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGD-GGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVKV 83 (155)
Q Consensus 6 ~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGd-g~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~~ 83 (155)
+.++.|++|+++||+++. |+.+ +++| |. +.++++.++. ...|....+.+..+ .......++..+++ +..++
T Consensus 2 ~~~~~i~a~~~~v~~~l~--d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~-~~~~~ 74 (141)
T cd07812 2 EASIEIPAPPEAVWDLLS--DPER-WPEWSPG-LERVEVLGGGEGGVGARFVGGRKGG--RRLTLTSEVTEVDP-PRPGR 74 (141)
T ss_pred cEEEEeCCCHHHHHHHHh--Chhh-hhhhCcc-cceEEEcCCCCccceeEEEEEecCC--ccccceEEEEEecC-CCceE
Confidence 578899999999999998 9877 5888 87 7888877654 46677766666412 22367888888876 77899
Q ss_pred EEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031668 84 TDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEE 126 (155)
Q Consensus 84 Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~ 126 (155)
|+...++.. ..+..++++++.++++|.++|..+|.+...
T Consensus 75 ~~~~~~~~~----~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~ 113 (141)
T cd07812 75 FRVTGGGGG----VDGTGEWRLEPEGDGGTRVTYTVEYDPPGP 113 (141)
T ss_pred EEEecCCCC----cceeEEEEEEECCCCcEEEEEEEEEecCCc
Confidence 999876642 578899999998766899999999998754
No 14
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.16 E-value=1.8e-09 Score=77.03 Aligned_cols=110 Identities=14% Similarity=0.062 Sum_probs=78.4
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeEE
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVKV 83 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~~ 83 (155)
+..+++|+||+++||+++. |+.+ +|+| |. +..++.....| |+.+......+ +....+..++.++|+. +.+.
T Consensus 2 i~~s~~I~a~~~~Vw~~l~--d~~~-~~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~-g~~~~~~~~i~~~~~~-~~i~ 73 (139)
T cd07814 2 ITIEREFDAPPELVWRALT--DPEL-LAQWFGP-TTTAEMDLRVG--GRWFFFMTGPD-GEEGWVSGEVLEVEPP-RRLV 73 (139)
T ss_pred eEEEEEecCCHHHHHHHcC--CHHH-HHhhhCc-CCceEEcccCC--ceEEEEEECCC-CCEEeccEEEEEEcCC-CeEE
Confidence 6789999999999999998 9877 5888 85 22333211222 66665554433 3334788999999754 7899
Q ss_pred EEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcC
Q 031668 84 TDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKE 125 (155)
Q Consensus 84 Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~ 125 (155)
|+...++.. +.-....++++.|.+ ++|.++|+.+|.+..
T Consensus 74 ~~~~~~~~~--~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~ 112 (139)
T cd07814 74 FTWAFSDET--PGPETTVTVTLEETG-GGTRLTLTHSGFPEE 112 (139)
T ss_pred EEecccCCC--CCCceEEEEEEEECC-CCEEEEEEEEccChH
Confidence 998776531 233578888898987 579999999998763
No 15
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.14 E-value=6.1e-09 Score=75.82 Aligned_cols=112 Identities=13% Similarity=0.021 Sum_probs=80.3
Q ss_pred eEEEEEEecCCHHHHhhhhhcCccccccccc-CCcee--eEEE--EcCCCCcceEEEEEecCCCCCceeEEEEEEEeecC
Q 031668 4 QVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVE--EIEI--VEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNE 78 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~--s~~~--~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~ 78 (155)
+++.++.|++|+++||+++. |+.+ +|+| |.... .++. .+++.++|+...++...+.+ ....++.+++ .
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~--D~~~-~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~---~~~~~v~~~~-p 75 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVN--DLKN-WPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVG---EGEMEITESV-P 75 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHh--Cccc-CcccCchhhcCcceEEEecCCCCCCCeEEEEecCCccc---ceEEEEEecC-C
Confidence 57889999999999999998 9987 6999 95321 1221 12334788887777654212 3456777775 4
Q ss_pred CCeEEEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031668 79 RRVKVTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEE 126 (155)
Q Consensus 79 ~~~~~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~ 126 (155)
++.+.|++..++++ + ..+..+++++|.+ +||.++|+.+|+....
T Consensus 76 ~~~i~~~~~~~~~~--~-~~~~~~~~~~~~~-~gT~v~~~~~~~~~~~ 119 (150)
T cd07818 76 NERIEYELRFIKPF--E-ATNDVEFTLEPVG-GGTKVTWGMSGELPFP 119 (150)
T ss_pred CcEEEEEEEecCCc--c-ccceEEEEEEEcC-CceEEEEEEEecCCch
Confidence 67899999865432 1 3678999999994 5799999999986543
No 16
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.13 E-value=5.9e-09 Score=77.08 Aligned_cols=112 Identities=20% Similarity=0.308 Sum_probs=80.2
Q ss_pred eEEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCC-CcceEEEEEecCCCC-CceeEEEEEEEeecCCC
Q 031668 4 QVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDG-GVGTILHLKFTPGTP-GFAGYKEKFIEIDNERR 80 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg-~~GsiR~~~~~~g~~-~~~~~kErl~~iD~~~~ 80 (155)
..+++++|++||++||+++. |..+ .|.| |. +.++++++.++ +.|+.-++.+..+ + ...+..|+ ..|...+
T Consensus 2 ~~~~si~i~a~~~~v~~lva--Dv~~-~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~-g~~~~w~s~~--~~~~~~~ 74 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTN--DIAT-WPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDAN-GTVWSWVSER--TLDPVNR 74 (146)
T ss_pred cceeEEEEcCCHHHHHHHHH--hhhh-hhhhccc-eEEEEEEEecCCeEEEEEEEEeccC-CEEEEEEEEE--EecCCCc
Confidence 46799999999999999999 9988 6999 86 88899876643 4553322333222 2 12232332 2688888
Q ss_pred eEEEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCc
Q 031668 81 VKVTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEA 127 (155)
Q Consensus 81 ~~~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~ 127 (155)
++.++-. ..+ |+.......+|+|.++ ||.|++..+|+..++.
T Consensus 75 ~i~~~~~-~~~---p~~~m~~~W~f~~~~~-gT~V~~~~~~~~~~~~ 116 (146)
T cd08860 75 TVRARRV-ETG---PFAYMNIRWEYTEVPE-GTRMRWVQDFEMKPGA 116 (146)
T ss_pred EEEEEEe-cCC---CcceeeeeEEEEECCC-CEEEEEEEEEEECCCC
Confidence 8887522 222 5788999999999866 4999999999987654
No 17
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.12 E-value=5.3e-09 Score=74.99 Aligned_cols=112 Identities=13% Similarity=0.187 Sum_probs=74.4
Q ss_pred eEEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeE
Q 031668 4 QVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVK 82 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~ 82 (155)
+++.++++++|+++||+++. |+.+ +++| |+ +++++.++++ .......+.+... +..-...-++.++|+ .+.+
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~--D~~~-~~~w~p~-~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~ 74 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALN--DPEV-LARCIPG-CESLEKIGPN-EYEATVKLKVGPV-KGTFKGKVELSDLDP-PESY 74 (144)
T ss_pred eeeeEEEecCCHHHHHHHhc--CHHH-HHhhccc-hhhccccCCC-eEEEEEEEEEccE-EEEEEEEEEEEecCC-CcEE
Confidence 47789999999999999998 9977 5888 97 7778866532 2111112222111 111122445555544 4677
Q ss_pred EEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcC
Q 031668 83 VTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKE 125 (155)
Q Consensus 83 ~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~ 125 (155)
.++....+.. ....+..++++.|. +++|.++|+.+|+..+
T Consensus 75 ~~~~~~~~~~--~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g 114 (144)
T cd05018 75 TITGEGKGGA--GFVKGTARVTLEPD-GGGTRLTYTADAQVGG 114 (144)
T ss_pred EEEEEEcCCC--ceEEEEEEEEEEec-CCcEEEEEEEEEEEcc
Confidence 7776543321 35689999999998 6689999999999764
No 18
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.10 E-value=1.3e-08 Score=74.46 Aligned_cols=108 Identities=14% Similarity=0.186 Sum_probs=76.7
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEc--CCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCe
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVE--GDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRV 81 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~e--Gdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~ 81 (155)
+..+.+|+||+++||+++. |..+ +|+| |+ ++++++++ ++.++|+..++......+....+.-++.++ +..+.
T Consensus 3 ~~~~~~i~ap~e~Vw~~~t--D~~~-~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~-~p~~~ 77 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLV--DAES-WPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRI-EPLSL 77 (146)
T ss_pred ceEEEEecCCHHHHHHHHh--Chhh-cchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEee-cCCcE
Confidence 5678899999999999999 9977 6999 96 89998887 334677776555432212112344455554 56778
Q ss_pred EEEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcC
Q 031668 82 KVTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKE 125 (155)
Q Consensus 82 ~~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~ 125 (155)
++|+. +|+. . ...+++|.|.++ ||.|+++.+|+...
T Consensus 78 ~~~~~-~g~~---~---~~~~~~~~~~~~-gt~vt~~~~~~~~~ 113 (146)
T cd07824 78 LEVRA-SGDL---E---GVGRWTLAPDGS-GTVVRYDWEVRTTK 113 (146)
T ss_pred EEEEE-EEee---e---EEEEEEEEEcCC-CEEEEEEEEEEcCH
Confidence 88885 5653 2 367888988654 79999999999743
No 19
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.05 E-value=6.5e-09 Score=75.20 Aligned_cols=108 Identities=15% Similarity=0.251 Sum_probs=80.9
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCC-C--CcceEEEEEecCCCCCceeEEEEEEEeecCCC
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGD-G--GVGTILHLKFTPGTPGFAGYKEKFIEIDNERR 80 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGd-g--~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~ 80 (155)
++.+++|+||+++||+.+. |..+ +|+| |. +.++++++.+ | .+|+.-.+.+... +..-.-+-+++.++ .++
T Consensus 1 ~~~s~~I~ap~e~V~~~~~--d~~~-~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~-~~~~~w~~~it~~~-p~~ 74 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHS--RPDN-LERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHF-GIPQRWTTEITEVE-PPR 74 (137)
T ss_pred CeEEEEcCCCHHHHHHHHc--Ccch-HHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEec-CCceEEEEEEEEEc-CCC
Confidence 4678999999999999999 9987 6999 97 7789987433 2 4578877777655 32223355566664 456
Q ss_pred eEEEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEc
Q 031668 81 VKVTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELK 124 (155)
Q Consensus 81 ~~~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~ 124 (155)
.++++...|+ +..+..+..+.|.++ ||.+++.++|+..
T Consensus 75 ~f~~~~~~G~-----~~~w~h~~~f~~~~~-gT~vt~~v~~~~p 112 (137)
T cd07820 75 RFVDEQVSGP-----FRSWRHTHRFEAIGG-GTLMTDRVEYRLP 112 (137)
T ss_pred eEEEEeccCC-----chhCEEEEEEEECCC-ceEEEEEEEEeCC
Confidence 7888877654 456778888888776 7999999999984
No 20
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.04 E-value=1.4e-08 Score=72.45 Aligned_cols=106 Identities=18% Similarity=0.196 Sum_probs=76.8
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeEE
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVKV 83 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~~ 83 (155)
++.+++|++|+++||+++. |+.+ +|+| |. +++++++.|. +....+.+..| .......++..++ .++.+.
T Consensus 2 v~~~i~I~ap~e~V~~~~~--D~~~-~~~w~~~-~~~~~~~~~~---~~~~~~~~~~g--~~~~~~~~v~~~~-~~~~i~ 71 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWR--DFEN-LPRFMSH-VESVEQLDDT---RSHWKAKGPAG--LSVEWDAEITEQV-PNERIA 71 (139)
T ss_pred eeEEEEeCCCHHHHHHHHh--Chhh-hHHHhhh-hcEEEEcCCC---ceEEEEecCCC--CcEEEEEEEeccC-CCCEEE
Confidence 6789999999999999998 9987 6999 96 7899876542 23333443323 2335566666554 455699
Q ss_pred EEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031668 84 TDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEE 126 (155)
Q Consensus 84 Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~ 126 (155)
|....|. + .+..++.+.+.++++|.+++++.|++...
T Consensus 72 ~~~~~~~-----~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~~ 108 (139)
T cd07817 72 WRSVEGA-----D-PNAGSVRFRPAPGRGTRVTLTIEYEPPGG 108 (139)
T ss_pred EEECCCC-----C-CcceEEEEEECCCCCeEEEEEEEEECCcc
Confidence 9876543 2 46688889898777899999999998653
No 21
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.95 E-value=7.3e-08 Score=68.47 Aligned_cols=103 Identities=19% Similarity=0.327 Sum_probs=72.6
Q ss_pred ecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeEEEEEEeC
Q 031668 11 VNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVKVTDAVEG 89 (155)
Q Consensus 11 i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~~Y~v~eg 89 (155)
|+||+++||+++. |+.+ +|.| |. ++++++++.++. +..-.+....+ +.......++... ...+ +.+...+|
T Consensus 1 V~ap~~~V~~~i~--D~e~-~~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~-~~~~~~~g 72 (130)
T PF03364_consen 1 VNAPPEEVWSVIT--DYEN-YPRFFPP-VKEVRVLERDGD-GMRARWEVKFG-GIKRSWTSRVTED-PPER-IRFEQISG 72 (130)
T ss_dssp ESS-HHHHHHHHT--TGGG-HHHHCTT-EEEEEEEEEECC-EEEEEEEECTT-TTCEEEEEEEEEE-CTTT-EEEESSET
T ss_pred CCCCHHHHHHHHH--HHHH-HHHhCCC-CceEEEEEeCCC-eEEEEEEEecC-CEEEEEEEEEEEE-Eeee-eeeeecCC
Confidence 6899999999998 9987 6999 97 889999987654 33334555544 2233455665544 3333 77776655
Q ss_pred CccCcCeeEEEEEEEEEeeCC--CceEEEEEEEEEEcCC
Q 031668 90 GYLDVGFTLFRVIFEIIEKGS--DSCIIRSIIEYELKEE 126 (155)
Q Consensus 90 ~~~~~~~~~y~~t~~v~~~~~--g~s~v~W~~~y~~~~~ 126 (155)
+++.+.++.+++|.++ |+|.++++.+|+....
T Consensus 73 -----~~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~ 106 (130)
T PF03364_consen 73 -----PFKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPP 106 (130)
T ss_dssp -----TEEEEEEEEEEEEETTECCEEEEEEEEEEEEETS
T ss_pred -----CchhcEEEEEEEECCCCcCCCEEEEEEEEEEecC
Confidence 3788999999999875 4677788888777444
No 22
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.86 E-value=1.5e-07 Score=68.66 Aligned_cols=112 Identities=20% Similarity=0.260 Sum_probs=69.3
Q ss_pred EEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEE--EEEEEeecCCCeE
Q 031668 6 SHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYK--EKFIEIDNERRVK 82 (155)
Q Consensus 6 ~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~k--Erl~~iD~~~~~~ 82 (155)
+.++++++|+++||+++. |..+ ++.| |+ +++++.. |++.. .-.+++..+ +-...++ =++..++...+.+
T Consensus 2 ~~~~~v~a~pe~vw~~l~--D~~~-~~~~~pg-~~~~~~~-~~~~~--~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 73 (146)
T cd07823 2 ENEFTVPAPPDRVWALLL--DIER-VAPCLPG-ASLTEVE-GDDEY--KGTVKVKLG-PISASFKGTARLLEDDEAARRA 73 (146)
T ss_pred CceEEecCCHHHHHHHhc--CHHH-HHhcCCC-ceecccc-CCCeE--EEEEEEEEc-cEEEEEEEEEEEEeccCCCcEE
Confidence 468899999999999998 9877 5788 97 7777753 32222 122333222 1101221 1455555578888
Q ss_pred EEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031668 83 VTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEE 126 (155)
Q Consensus 83 ~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~ 126 (155)
+++.-..+.....--....++++.| .+++|.++|.++++..+.
T Consensus 74 ~~~~~g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g~ 116 (146)
T cd07823 74 VLEATGKDARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALTGK 116 (146)
T ss_pred EEEEEEecCCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEeeE
Confidence 8876431111001124667778888 456899999999986543
No 23
>PRK10724 hypothetical protein; Provisional
Probab=98.79 E-value=2.7e-07 Score=69.22 Aligned_cols=108 Identities=13% Similarity=0.203 Sum_probs=80.8
Q ss_pred eEEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeE
Q 031668 4 QVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVK 82 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~ 82 (155)
++..++.+++|++++|+++. |..+ .|+| |. .+++++++-++. +.+..++++-+ +-......|.. +++ .+.+
T Consensus 16 ~i~~~~~v~~s~~~v~~lv~--Dve~-yp~flp~-~~~s~vl~~~~~-~~~a~l~v~~~-g~~~~f~srv~-~~~-~~~I 87 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLVN--DVQS-YPQFLPG-CTGSRVLESTPG-QMTAAVDVSKA-GISKTFTTRNQ-LTS-NQSI 87 (158)
T ss_pred eEEEEEEecCCHHHHHHHHH--HHHH-HHHhCcc-cCeEEEEEecCC-EEEEEEEEeeC-CccEEEEEEEE-ecC-CCEE
Confidence 57888999999999999998 9977 6999 96 778888765432 23444554433 32334455545 444 4489
Q ss_pred EEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEc
Q 031668 83 VTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELK 124 (155)
Q Consensus 83 ~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~ 124 (155)
.+++++|+ ++.+.+..++.|.++++|.|++..+|+..
T Consensus 88 ~~~~~~Gp-----F~~l~g~W~f~p~~~~~t~V~~~l~fef~ 124 (158)
T PRK10724 88 LMQLVDGP-----FKKLIGGWKFTPLSQEACRIEFHLDFEFT 124 (158)
T ss_pred EEEecCCC-----hhhccceEEEEECCCCCEEEEEEEEEEEc
Confidence 99998873 66799999999988778999999999975
No 24
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.70 E-value=3e-07 Score=67.99 Aligned_cols=112 Identities=19% Similarity=0.303 Sum_probs=78.3
Q ss_pred EEEEEEecCCHHHHhhhhhcCcccccccccCCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeEEE
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKESDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVKVT 84 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~~Y 84 (155)
++-+..|++|+++||+++. |+..+.+-+|+ ++|++ .+||.-.+ .-.+.+.+- ..--..+=++..+|+..++|+.
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~--dpe~~a~ciPG-~qs~e-~~g~e~~~-~v~l~ig~l-~~~~~g~~~~~~v~~~~~~~~i 76 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLN--DPEQVAACIPG-VQSVE-TNGDEYTA-KVKLKIGPL-KGTFSGRVRFVNVDEPPRSITI 76 (146)
T ss_pred ccceEEecCCHHHHHHHhc--CHHHHHhhcCC-cceee-ecCCeEEE-EEEEeecce-eEEEEEEEEEccccCCCcEEEE
Confidence 5678899999999999998 88776555598 99999 56763111 112222211 1111334456667889999998
Q ss_pred EEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcC
Q 031668 85 DAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKE 125 (155)
Q Consensus 85 ~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~ 125 (155)
+.-.|... ..-+.++.+++.|.++| |++.|.+.-+..+
T Consensus 77 ~g~G~~~~--g~~~~~~~v~l~~~g~g-t~v~w~~~~~~gg 114 (146)
T COG3427 77 NGSGGGAA--GFADGTVDVQLEPSGEG-TRVNWFADANVGG 114 (146)
T ss_pred Eeeccccc--ceeeeeeEEEEEEcCCC-cEEEEEEEccccH
Confidence 88553433 57788999999998886 9999998877644
No 25
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.54 E-value=4.3e-06 Score=60.97 Aligned_cols=139 Identities=12% Similarity=0.051 Sum_probs=79.2
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeEE
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVKV 83 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~~ 83 (155)
++.+..++||+++||+++- |...+..++ |.- -.+...+.|-.+|..-.+.+....+....+.=++.++++ .+.+.
T Consensus 2 l~i~r~~~ap~e~Vw~a~T--dpe~l~~W~~p~~-~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p-~~~l~ 77 (142)
T cd07826 2 IVITREFDAPRELVFRAHT--DPELVKRWWGPRG-LTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTP-PERIV 77 (142)
T ss_pred EEEEEEECCCHHHHHHHhC--CHHHHhhccCCCC-CcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcC-CCEEE
Confidence 6778899999999999998 776654444 652 222223444344444445443211222234556777854 44455
Q ss_pred EEEE-eCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCcchhHHHHHHHHHHHHHHHhh
Q 031668 84 TDAV-EGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEAAANASFVSTDAVAKIAEMAKNYLLN 152 (155)
Q Consensus 84 Y~v~-eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~ 152 (155)
|+-- ++.. -.....++++.+.+ |+|.++.+..|...............+.-..++..|++||.+
T Consensus 78 ~t~~~~~~~----~~~s~v~~~l~~~~-~gT~l~l~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~~ 142 (142)
T cd07826 78 QTEEFEGLP----DGVALETVTFTELG-GRTRLTATSRYPSKEARDGVLASGMEEGMEESYDRLDELLAS 142 (142)
T ss_pred EEeEecCCC----CCceEEEEEEEECC-CCEEEEEEEEeCCHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 5432 2222 12346678888865 679988886664321111111112456777888899998853
No 26
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.53 E-value=3.8e-06 Score=60.84 Aligned_cols=135 Identities=15% Similarity=0.139 Sum_probs=77.2
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEe-cCCCCCceeEEEEEEEeecCCCeE
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKF-TPGTPGFAGYKEKFIEIDNERRVK 82 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~-~~g~~~~~~~kErl~~iD~~~~~~ 82 (155)
++.+..++||+++||+++. |...+..+| |.-+.... .+.|-.+|..-.+.+ .++ |..-...=++.++ +.++.+
T Consensus 2 l~~~r~i~ap~e~Vw~a~t--~p~~l~~W~~p~~~~~~~-~~~d~~~GG~~~~~~~~~~-g~~~~~~g~v~e~-~p~~~l 76 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWT--DPEHLAQWWGPEGFTNTT-HEFDLRPGGRWRFVMHGPD-GTDYPNRIVFLEI-EPPERI 76 (139)
T ss_pred EEEEEEeCCCHHHHHHHhC--CHHHHhhccCcCCCcceE-EEEEecCCCEEEEEEECCC-CCEecceEEEEEE-cCCCEE
Confidence 6788899999999999998 776554444 65332222 233333444434433 222 2211233467778 556677
Q ss_pred EEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCcchhHHHHHHHHHHHHHHHh
Q 031668 83 VTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEAAANASFVSTDAVAKIAEMAKNYLL 151 (155)
Q Consensus 83 ~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~ 151 (155)
.|+...++ + ....+++++|.+ |+|.++.+..|....................++..|++||.
T Consensus 77 ~~t~~~~~----~--~~~v~~~~~~~~-~gT~ltl~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 77 VYDHGSGP----P--RFRLTVTFEEQG-GKTRLTWRQVFPTAAERCEKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred EEEeccCC----C--cEEEEEEEEECC-CCEEEEEEEEcCCHHHHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 78764332 1 245778888876 67988888765322110000001234566777888888873
No 27
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.46 E-value=8.2e-06 Score=59.56 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=64.2
Q ss_pred EEEecCCHHHHhhhhhcCcccccccccCCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCe-EEEEE
Q 031668 8 ELEVNVPAAQAWELYGTIKLAKLVEKESDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRV-KVTDA 86 (155)
Q Consensus 8 e~~i~apa~kvW~~~~~~d~~~~~p~~P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~-~~Y~v 86 (155)
+.+|++|+++||+++. |...+.+=+|+ +++.+.+. +.--+.+ ++.+.+- ...=..+=++..+|+.++. +..+.
T Consensus 2 s~~v~a~~~~vw~~l~--D~~~l~~ciPG-~~~~e~~~-~~~~~~~-~v~vG~i-~~~~~g~~~~~~~~~~~~~~~~~~g 75 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLS--DPENLARCIPG-VESIEKVG-DEYKGKV-KVKVGPI-KGTFDGEVRITEIDPPESYTLEFEG 75 (140)
T ss_dssp EEEECS-HHHHHHHHT---HHHHHHHSTT-EEEEEEEC-TEEEEEE-EEESCCC-EEEEEEEEEEEEEETTTEEEEEEEE
T ss_pred cEEecCCHHHHHHHhc--CHHHHHhhCCC-cEEeeecC-cEEEEEE-EEEeccE-EEEEEEEEEEEEcCCCcceEeeeec
Confidence 5789999999999998 98876544498 88998665 4111111 1222111 0001234456667776665 44443
Q ss_pred EeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcC
Q 031668 87 VEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKE 125 (155)
Q Consensus 87 ~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~ 125 (155)
- +.. .-.+..+.+++...++++|.+.|+++++-.+
T Consensus 76 ~--g~~--~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G 110 (140)
T PF06240_consen 76 R--GRG--GGSSASANITLSLEDDGGTRVTWSADVEVGG 110 (140)
T ss_dssp E--ECT--CCEEEEEEEEEEECCCTCEEEEEEEEEEEEC
T ss_pred c--CCc--cceEEEEEEEEEcCCCCCcEEEEEEEEEEcc
Confidence 2 222 2335566777766665569999999999755
No 28
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.45 E-value=4.1e-06 Score=60.19 Aligned_cols=136 Identities=10% Similarity=0.123 Sum_probs=77.8
Q ss_pred eEEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeE
Q 031668 4 QVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVK 82 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~ 82 (155)
.++.+++|+||+++||+++. |... +++| |... .....|.+..| .+.+.+.. .....=++..+ +..+.+
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~t--d~~~-~~~W~~~~~--~~~~~~~~~~g---~~~~~~~~--~~~~~~~i~~~-~p~~~l 70 (145)
T cd08898 2 RIERTILIDAPRERVWRALT--DPEH-FGQWFGVKL--GPFVVGEGATG---EITYPGYE--HGVFPVTVVEV-DPPRRF 70 (145)
T ss_pred eeEEEEEecCCHHHHHHHhc--Chhh-hhhcccccC--CCcccCCccee---EEecCCCC--ccceEEEEEEe-CCCcEE
Confidence 57899999999999999998 8766 5778 6422 12112222223 33433220 11345577777 666777
Q ss_pred EEEEEeCCc---cC-cCeeEEEEEEEEEeeCCCceEEEEEEE-EEEcCCcccC-CcchhHHHHHHHHHHHHHHHh
Q 031668 83 VTDAVEGGY---LD-VGFTLFRVIFEIIEKGSDSCIIRSIIE-YELKEEAAAN-ASFVSTDAVAKIAEMAKNYLL 151 (155)
Q Consensus 83 ~Y~v~eg~~---~~-~~~~~y~~t~~v~~~~~g~s~v~W~~~-y~~~~~~~~~-~~~~~~~~~~~~~k~~e~~l~ 151 (155)
.|+...... .. ..-.....++++++.+ ++|.++++-. |...++.... ........-..++..|++||-
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 71 SFRWHPPAIDPGEDYSAEPSTLVEFTLEPIA-GGTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred EEEecCCCcccccccCCCCceEEEEEEEecC-CcEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 787643320 00 0122356788888876 4699999866 4332111000 101245666677788888874
No 29
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.42 E-value=4.4e-05 Score=55.42 Aligned_cols=137 Identities=12% Similarity=-0.010 Sum_probs=76.8
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEec-CCCCCceeEEEEEEEeecCCCeE
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFT-PGTPGFAGYKEKFIEIDNERRVK 82 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~-~g~~~~~~~kErl~~iD~~~~~~ 82 (155)
++.+..++||+++||+++. |...+..++ |..--.++..+.|-.+|..-.+.+. .+ +......=++.++| ..+.+
T Consensus 2 ~~i~r~~~ap~e~Vw~a~t--dp~~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~-g~~~~~~g~~~~~~-p~~~l 77 (143)
T cd08900 2 FTLERTYPAPPERVFAAWS--DPAARARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKG-GPEITVEARYHDIV-PDERI 77 (143)
T ss_pred EEEEEEeCCCHHHHHHHhc--CHHHHHhcCCCCCCCceeeeEEecCCCCEEEEEEECCC-CCEEeeeEEEEEec-CCceE
Confidence 5678889999999999998 776654444 6211122223333334444444443 23 33233445677784 45556
Q ss_pred EEEEE--eCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCcchhHHHHHHHHHHHHHHHh
Q 031668 83 VTDAV--EGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEAAANASFVSTDAVAKIAEMAKNYLL 151 (155)
Q Consensus 83 ~Y~v~--eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~ 151 (155)
.|+-. .++. +......++.+.+.+ |+|.++.+-.+-..++.+..+ ...+.-..++..|++||-
T Consensus 78 ~~t~~~~~~~~---~~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~~~~~--~~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 78 VYTYTMHIGGT---LLSASLATVEFAPEG-GGTRLTLTEQGAFLDGDDDPA--GREQGTAALLDNLAAELE 142 (143)
T ss_pred EEEEeeccCCc---cccceEEEEEEEECC-CCEEEEEEEEEecccccchhh--hHHHHHHHHHHHHHHHHh
Confidence 55542 2222 222345778888875 578888876653322211111 245666777888888773
No 30
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.42 E-value=2.7e-05 Score=56.82 Aligned_cols=139 Identities=12% Similarity=0.072 Sum_probs=74.6
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEec-CCCCCceeEEEEEEEeecCCCeE
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFT-PGTPGFAGYKEKFIEIDNERRVK 82 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~-~g~~~~~~~kErl~~iD~~~~~~ 82 (155)
+..+..++||+++||+++- |...+..|| |.-.. +...+.|-.+|..-++.+. ++ |..-...=++.++|+. +.+
T Consensus 2 l~i~r~i~a~~e~Vw~a~t--~pe~~~~W~~p~~~~-~~~~~~d~~~GG~~~~~~~~~~-g~~~~~~g~v~~i~p~-~~l 76 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWT--EPELLKQWFCPKPWT-TEVAELDLRPGGAFRTVMRGPD-GEEFPNPGCFLEVVPG-ERL 76 (146)
T ss_pred eEEEEEeCCCHHHHHHHcC--CHHHHhccCCCCCcc-ceEEEEEeecCcEEEEEEECCC-CCEecceEEEEEEeCC-CEE
Confidence 5678899999999999997 776654445 64111 1112222123333344442 22 3222345568888554 445
Q ss_pred EEE--EEeC-CccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCcchhHHHHHHHHHHHHHHHh
Q 031668 83 VTD--AVEG-GYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEAAANASFVSTDAVAKIAEMAKNYLL 151 (155)
Q Consensus 83 ~Y~--v~eg-~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~ 151 (155)
.|+ +.++ ++...+ .-..++++++.+ ++|.++.+..+...............+.-..++..|++||.
T Consensus 77 ~~t~~~~~~~~~~~~~--~~~v~~~~~~~~-~gT~Ltl~~~~~~~~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 77 VFTDALTPGWRPAEKP--FMTAIITFEDEG-GGTRYTARARHWTEADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEEEeecCCcCCCCCC--cEEEEEEEEecC-CcEEEEEEEEeCCHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 554 3222 111112 135678888865 57888877554321110000001134667788888888875
No 31
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.40 E-value=4.3e-05 Score=55.73 Aligned_cols=137 Identities=8% Similarity=-0.029 Sum_probs=78.2
Q ss_pred eEEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEe--cCC-----CCCceeEEEEEEEe
Q 031668 4 QVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKF--TPG-----TPGFAGYKEKFIEI 75 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~--~~g-----~~~~~~~kErl~~i 75 (155)
+++.+..|+||+++||+++. |...+..++ |..+.. ...+.+-.+|..-.+.+ ..+ .+......=++.++
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~t--d~~~~~~W~~p~~~~~-~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v 77 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAFL--DPDALAKWLPPDGMTG-TVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLEL 77 (146)
T ss_pred CEEEEEEECCCHHHHHHHHc--CHHHHhhcCCCCCeEe-EEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEE
Confidence 36788899999999999998 887654444 653322 22233323333333332 220 01112334467778
Q ss_pred ecCCCeEEEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCcchhHHHHHHHHHHHHHHHh
Q 031668 76 DNERRVKVTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEAAANASFVSTDAVAKIAEMAKNYLL 151 (155)
Q Consensus 76 D~~~~~~~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~ 151 (155)
+ .++.+.|+..-.+... + .....++.+++.+ ++|.++++...-+.. .. .....+.-..++..|++||-
T Consensus 78 ~-p~~~i~~~~~~~~~~~-~-~~~~v~~~~~~~~-~~T~lt~~~~~~~~~---~~-~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 78 V-PNERIVYTDVFDDPSL-S-GEMTMTWTLSPVS-GGTDVTIVQSGIPDG---IP-PEDCELGWQESLANLAALVE 145 (146)
T ss_pred c-CCCEEEEEEEecCCCC-C-ceEEEEEEEEecC-CCEEEEEEEeCCCch---hh-hhHHHHHHHHHHHHHHHHhc
Confidence 4 4556667643222211 2 2346888888876 578888887643211 11 11356777788888888874
No 32
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.33 E-value=2e-05 Score=58.43 Aligned_cols=126 Identities=13% Similarity=0.113 Sum_probs=79.6
Q ss_pred eEEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeE
Q 031668 4 QVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVK 82 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~ 82 (155)
.++.+..|+||+++||+++. |+.+ ++.| |.. .++-.+|...++.+... + .....-++.++|+ ++.+
T Consensus 12 ~i~~~~~i~Ap~e~Vw~alt--dp~~-~~~W~~~~-------~~~~~~G~~~~~~~~~~-~-~~~~~~~v~e~~p-~~~l 78 (157)
T cd08899 12 TLRFERLLPAPIEDVWAALT--DPER-LARWFAPG-------TGDLRVGGRVEFVMDDE-E-GPNATGTILACEP-PRLL 78 (157)
T ss_pred EEEEEEecCCCHHHHHHHHc--CHHH-HHhhcCCC-------CCCcccCceEEEEecCC-C-CCccceEEEEEcC-CcEE
Confidence 47889999999999999998 8876 5788 732 12224555556665431 1 1245778887754 4678
Q ss_pred EEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCcchhHHHHHHHHHHHHHHHhhC
Q 031668 83 VTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEAAANASFVSTDAVAKIAEMAKNYLLNN 153 (155)
Q Consensus 83 ~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~ 153 (155)
.|+...++. ....+++|++.+ ++|.++.+.++.+... ... ...+.-..++..+.+||-..
T Consensus 79 ~~~~~~~~~------~~~~~~~l~~~~-~gT~v~~~~~~~~~~~--~~~--~~~~GW~~~L~~Lk~~~e~~ 138 (157)
T cd08899 79 AFTWGEGGG------ESEVRFELAPEG-DGTRLTLTHRLLDERF--GAG--AVGAGWHLCLDVLEAALEGG 138 (157)
T ss_pred EEEecCCCC------CceEEEEEEEcC-CCEEEEEEEeccCchh--hhh--hhcccHHHHHHHHHHHHcCC
Confidence 888754331 235677777765 5788888877765431 111 13455556667777776544
No 33
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.17 E-value=0.00012 Score=52.56 Aligned_cols=128 Identities=16% Similarity=0.262 Sum_probs=74.8
Q ss_pred eEEEEEEecCCHHHHhhhhhcCccccccccc-CCceee--EEEEcCCCCcceEEEEEec-CCCCCceeEEEEEEEeecCC
Q 031668 4 QVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEE--IEIVEGDGGVGTILHLKFT-PGTPGFAGYKEKFIEIDNER 79 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s--~~~~eGdg~~GsiR~~~~~-~g~~~~~~~kErl~~iD~~~ 79 (155)
|++.++.++||+++||+++. |... +.+| +. ... +...+.|=.+|..-.+.+. .+.+....+.=++.++ +..
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~t--d~e~-~~~W~~~-~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei-~p~ 75 (133)
T cd08897 1 KITVETTVDAPIEKVWEAWT--TPEH-ITKWNFA-SDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEV-EPH 75 (133)
T ss_pred CEEEEEEeCCCHHHHHHHhC--CHHH-HhhCCCC-CCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEE-CCC
Confidence 57889999999999999998 7655 5666 32 111 1112233234444444432 2201111234566667 667
Q ss_pred CeEEEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCcchhHHHHHHHHHHHHHHHh
Q 031668 80 RVKVTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEAAANASFVSTDAVAKIAEMAKNYLL 151 (155)
Q Consensus 80 ~~~~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~ 151 (155)
+.+.|+..++ ...++.+.|.+ ++|.++-+ +...+.. . .......-..++..|++||-
T Consensus 76 ~~l~~~~~~~---------~~v~~~l~~~~-~gT~l~l~--~~~~~~~--~-~~~~~~GW~~~l~~L~~~le 132 (133)
T cd08897 76 KLIEYTMEDG---------REVEVEFTEEG-DGTKVVET--FDAENEN--P-VEMQRQGWQAILDNFKKYVE 132 (133)
T ss_pred CEEEEEcCCC---------CEEEEEEEECC-CCEEEEEE--ECCCCCC--c-HHHHHHHHHHHHHHHHHHhh
Confidence 7888886321 24688888865 57887764 4443221 1 11245677778888888874
No 34
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.13 E-value=0.00012 Score=53.43 Aligned_cols=135 Identities=12% Similarity=0.004 Sum_probs=72.2
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc-CCce------eeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeec
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTV------EEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDN 77 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v------~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~ 77 (155)
++.++.|+||+++||+++. | .+..|| |... ..|++.-..| |..+ +...+| . ....=++.+++
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t--~--~l~~W~~p~~~~~~~~~~~~~~d~~~G--G~~~-~~~~~g--~-~~~~g~v~~v~- 70 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFT--E--GFGAWWPPEYHFVFSPGAEVVFEPRAG--GRWY-EIGEDG--T-ECEWGTVLAWE- 70 (149)
T ss_pred eEEEEEecCCHHHHHHHHH--h--chhhccCCCcccccCCCccEEEcccCC--cEEE-EecCCC--c-EeceEEEEEEc-
Confidence 6789999999999999997 7 344455 6421 3344221123 3332 222222 1 22345677784
Q ss_pred CCCeEEEEEE-eCCcc-CcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCc---ccCCcchhHHHHHHHHHHHHHHHh
Q 031668 78 ERRVKVTDAV-EGGYL-DVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEA---AANASFVSTDAVAKIAEMAKNYLL 151 (155)
Q Consensus 78 ~~~~~~Y~v~-eg~~~-~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~---~~~~~~~~~~~~~~~~k~~e~~l~ 151 (155)
..+.+.|+-. ..+.. ..+. .-..++++++.++++|.++.+-.+-..... +..........-..++..|++||-
T Consensus 71 p~~~l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~ 148 (149)
T cd08891 71 PPSRLVFTWQINADWRPDPDK-ASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAE 148 (149)
T ss_pred CCCEEEEEeccCCCcCcCCCC-ceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhc
Confidence 4555656643 21111 0011 235778888876467988888776543221 000000123455567777777763
No 35
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.12 E-value=0.00011 Score=52.00 Aligned_cols=132 Identities=16% Similarity=0.069 Sum_probs=74.9
Q ss_pred eEEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeE
Q 031668 4 QVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVK 82 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~ 82 (155)
|++.++.|+||+++||+++. |..+ ++.| +... .+++-.+|..-.+..... ....+.=++.+++ .++.+
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~t--d~~~-~~~W~~~~~-----~~~~~~~G~~~~~~~~~~--~~~~~~~~v~~~~-~~~~l 69 (136)
T cd08893 1 KFVYVTYIRATPEKVWQALT--DPEF-TRQYWGGTT-----VESDWKVGSAFEYRRGDD--GTVDVEGEVLESD-PPRRL 69 (136)
T ss_pred CeEEEEEecCCHHHHHHHHc--Cchh-hhheecccc-----cccCCcCCCeEEEEeCCC--cccccceEEEEec-CCCeE
Confidence 57889999999999999998 8866 5777 5421 123323444334444321 1113455666675 56667
Q ss_pred EEEEEeCCcc-CcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCcchhHHHHHHHHHHHHHHH
Q 031668 83 VTDAVEGGYL-DVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEAAANASFVSTDAVAKIAEMAKNYL 150 (155)
Q Consensus 83 ~Y~v~eg~~~-~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l 150 (155)
.|+...+... ..+-.....++.+.+.++ +|.++.+.+-...+. ...+ ........+++.|.+||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~~~~-~~~~--~~~~gw~~~l~~Lk~~~ 134 (136)
T cd08893 70 VHTWRAVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFPPGS-PTLE--GVSGGWPAILSSLKTLL 134 (136)
T ss_pred EEEEecCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCCCCch-hHHH--hhhcCHHHHHHHHHHHh
Confidence 6776433221 001234667788888654 677666655432211 0111 24455666777777776
No 36
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.09 E-value=2.1e-05 Score=60.03 Aligned_cols=108 Identities=10% Similarity=0.166 Sum_probs=79.8
Q ss_pred eEEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeE
Q 031668 4 QVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVK 82 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~ 82 (155)
.++++++|+.|++.||..++ |+.+ +|.| .+ +.|+++.+-.- |.-.++-+.+ ..++|-- ||+ -|..+..|
T Consensus 71 ~v~~~V~I~kPae~vy~~W~--dLe~-lP~~Mkh-l~SVkVlddkr---SrW~~~ap~g-~~v~Wea-~it-~d~~~e~I 140 (217)
T COG5637 71 EVEVQVTIDKPAEQVYAYWR--DLEN-LPLWMKH-LDSVKVLDDKR---SRWKANAPLG-LEVEWEA-EIT-KDIPGERI 140 (217)
T ss_pred EEEEEEEeCChHHHHHHHHH--hhhh-hhHHHHh-hceeeccCCCc---cceeEcCCCC-ceEEEee-hhh-ccCCCcEE
Confidence 36778899999999999999 9987 6999 86 99999876541 3333443334 3334433 444 57899999
Q ss_pred EEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031668 83 VTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEE 126 (155)
Q Consensus 83 ~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~ 126 (155)
.|.=++|.-+. -++.++|.+..++.|.|+.+.+|.+.++
T Consensus 141 ~W~Sl~Ga~v~-----NsG~VrF~~~pg~~t~V~v~lsY~~Pgg 179 (217)
T COG5637 141 QWESLPGARVE-----NSGAVRFYDAPGDSTEVKVTLSYRPPGG 179 (217)
T ss_pred eeecCCCCcCC-----CCccEEeeeCCCCceEEEEEEEecCCcc
Confidence 99999985432 3566888887766789999999998665
No 37
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.09 E-value=0.00049 Score=52.33 Aligned_cols=119 Identities=6% Similarity=-0.064 Sum_probs=72.7
Q ss_pred eEEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCC--CCCceeEEEEEEEeecCCC
Q 031668 4 QVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPG--TPGFAGYKEKFIEIDNERR 80 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g--~~~~~~~kErl~~iD~~~~ 80 (155)
.+..+.++++||+++|+++. |... .|+| |. +.++++++-.|.--.+-.+.+... ..+-..+-.+-...+.++.
T Consensus 42 ~~k~~~~i~~s~e~v~~vi~--d~e~-~~~w~~~-~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~ 117 (195)
T cd08876 42 EFKAVAEVDASIEAFLALLR--DTES-YPQWMPN-CKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDG 117 (195)
T ss_pred EEEEEEEEeCCHHHHHHHHh--hhHh-HHHHHhh-cceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCC
Confidence 46778889999999999998 8865 6999 96 889998876542122222333211 1111233222122333244
Q ss_pred eEEEEEEeCCcc---Cc---CeeEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031668 81 VKVTDAVEGGYL---DV---GFTLFRVIFEIIEKGSDSCIIRSIIEYELKEE 126 (155)
Q Consensus 81 ~~~Y~v~eg~~~---~~---~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~ 126 (155)
.+...+...+.. .. ....+.+...++|.++++|.+++...+++.+.
T Consensus 118 ~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~ 169 (195)
T cd08876 118 SVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS 169 (195)
T ss_pred EEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC
Confidence 444444333210 00 14567777888898888899999999998654
No 38
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.79 E-value=0.00069 Score=48.82 Aligned_cols=129 Identities=12% Similarity=0.082 Sum_probs=72.8
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeEE
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVKV 83 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~~ 83 (155)
++.++.++||+++||+++. |...+..+| |. .+.++.. |..-.+.+... ++ .+.=++.++ +..+.+.
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t--~p~~l~~W~~~~--~~~~~~~-----Gg~~~~~~~~~-~~--~~~g~~~~~-~p~~~l~ 68 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFV--DPEITTKFWFTG--SSGRLEE-----GKTVTWDWEMY-GA--SVPVNVLEI-EPNKRIV 68 (136)
T ss_pred eeEEEEecCCHHHHHHHhc--CHHHhccccccC--CCccccC-----CCEEEEEEEcc-CC--ceEEEEEEE-cCCCEEE
Confidence 5788999999999999998 765543344 53 2344323 33334555433 22 233366767 5567777
Q ss_pred EEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCccc-CCcchhHHHHHHHHHHHHHHHhh
Q 031668 84 TDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEAAA-NASFVSTDAVAKIAEMAKNYLLN 152 (155)
Q Consensus 84 Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~-~~~~~~~~~~~~~~k~~e~~l~~ 152 (155)
|+--.++ +. -..++++.+.++|+|.++.+-..-+.+..+. ............++..+++||..
T Consensus 69 ~~w~~~~----~~--s~v~~~l~~~~~ggT~ltl~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~le~ 132 (136)
T cd08901 69 IEWGDPG----EP--TTVEWTFEELDDGRTFVTITESGFPGTDDEGLKQALGSTEGWTLVLAGLKAYLEH 132 (136)
T ss_pred EEecCCC----CC--EEEEEEEEECCCCcEEEEEEECCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 8764321 22 3467888887656788777754333211100 00001234555667777777754
No 39
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.0014 Score=48.39 Aligned_cols=136 Identities=11% Similarity=0.121 Sum_probs=71.1
Q ss_pred cceEEEEEEecCCHHHHhhhhhcCccccccccc--CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCC
Q 031668 2 KGQVSHELEVNVPAAQAWELYGTIKLAKLVEKE--SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNER 79 (155)
Q Consensus 2 ~~~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~--P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~ 79 (155)
...+..+..|++|+++||+++. |.. ++.+| |+- .+..+.-| + |....+....+ +.-...-++.++ ..+
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~T--dpe-~l~~W~~~~~-~~~d~r~g--g-~~~~~~~~~~g--~~~~~~~~~~~v-~p~ 76 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALT--DPE-LLARWFMPGG-AEFDARTG--G-GERVRFRGPDG--PVHSFEGEYLEV-VPP 76 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhc--CHH-HHHhhcCCCC-CccceecC--C-ceEEeeecCCC--CeeecceEEEEE-cCC
Confidence 3468889999999999999998 664 46777 432 11111111 1 22223333333 233456677777 445
Q ss_pred CeEEEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCc-ccC---CcchhHHHHHHHHHHHHHHHh
Q 031668 80 RVKVTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEA-AAN---ASFVSTDAVAKIAEMAKNYLL 151 (155)
Q Consensus 80 ~~~~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~-~~~---~~~~~~~~~~~~~k~~e~~l~ 151 (155)
+.|.|+-...+... +...=..++++++..+|+ +++......... +.. ......+.-..++..++++|.
T Consensus 77 ~rIv~tw~~~~~~~-~~~~~~v~~~l~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 77 ERIVFTWDFDEDGE-PFLKSLVTITLTPEDDGG---TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred cEEEEEeccCCCCC-cccCceEEEEEEEecCCC---cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 55555543332211 333346677777766653 222222222221 111 111125667778888887764
No 40
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.56 E-value=0.0018 Score=45.01 Aligned_cols=122 Identities=15% Similarity=0.175 Sum_probs=66.6
Q ss_pred cCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeEEEEEEeCC
Q 031668 12 NVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVKVTDAVEGG 90 (155)
Q Consensus 12 ~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~~Y~v~eg~ 90 (155)
+||+++||+++. |... +.+| +......+. .+|..-++. ..+ +......=++.++++. +.+.|+.--++
T Consensus 1 ~ap~e~Vw~a~t--~~~~-~~~W~~~~~~~~~~-----~~Gg~~~~~-~~~-g~~~~~~~~v~~~~p~-~~i~~~~~~~~ 69 (124)
T PF08327_consen 1 DAPPERVWEALT--DPEG-LAQWFTTSEAEMDF-----RPGGSFRFM-DPD-GGEFGFDGTVLEVEPP-ERIVFTWRMPD 69 (124)
T ss_dssp SSSHHHHHHHHH--SHHH-HHHHSEEEEEEEEC-----STTEEEEEE-ETT-SEEEEEEEEEEEEETT-TEEEEEEEEET
T ss_pred CcCHHHHHHHHC--CHhH-HhhccCCCcceeee-----ecCCEEEEE-ecC-CCCceeeEEEEEEeCC-EEEEEEEEccC
Confidence 699999999998 7655 4666 422333332 233333332 233 3223333358888554 44777754333
Q ss_pred ccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCcchhHHHHHHHHHHHHHHH
Q 031668 91 YLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEAAANASFVSTDAVAKIAEMAKNYL 150 (155)
Q Consensus 91 ~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l 150 (155)
.. +-.....+++|.+ .+++|.++.+.+=.+.+. ..+. ........++..|.+||
T Consensus 70 ~~--~~~~~~v~~~~~~-~~~~T~l~~~~~~~~~~~--~~~~-~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 70 DP--DGPESRVTFEFEE-EGGGTRLTLTHSGFPDDD--EEEE-GMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp SS--SCEEEEEEEEEEE-ETTEEEEEEEEEEEHSHH--HHHH-CHHHHHHHHHHHHHHHH
T ss_pred CC--CCCceEEEEEEEE-cCCcEEEEEEEEcCCccH--HHHH-HHHHHHHHHHHHHHHHh
Confidence 21 2334577888888 556787776652222111 0110 14566667777777776
No 41
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.27 E-value=0.02 Score=40.61 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=55.6
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc--CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeE
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE--SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVK 82 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~--P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~ 82 (155)
++.+..++||+++||+++- |...+ .+| |. .+.+...| |..+ +..| .+.=++.+++ .++.+
T Consensus 2 i~~~r~i~ap~e~Vw~A~T--~~e~l-~~W~~~~--~~~d~~~G----G~~~---~~~g-----~~~g~~~~i~-p~~~l 63 (126)
T cd08892 2 ISLTETFQVPAEELYEALT--DEERV-QAFTRSP--AKVDAKVG----GKFS---LFGG-----NITGEFVELV-PGKKI 63 (126)
T ss_pred eEEEEEECCCHHHHHHHHC--CHHHH-HhhcCCC--ceecCCCC----CEEE---EeCC-----ceEEEEEEEc-CCCEE
Confidence 5778899999999999997 76554 555 53 23433222 3333 2233 2344567775 45555
Q ss_pred EEEEEeCC-ccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEE
Q 031668 83 VTDAVEGG-YLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYEL 123 (155)
Q Consensus 83 ~Y~v~eg~-~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~ 123 (155)
.|+---.+ .. . ..-..++.+++. +++|.++.+-+..+
T Consensus 64 ~~~w~~~~~~~--~-~~s~v~~~l~~~-~~gT~ltl~~~g~~ 101 (126)
T cd08892 64 VQKWRFKSWPE--G-HYSTVTLTFTEK-DDETELKLTQTGVP 101 (126)
T ss_pred EEEEEcCCCCC--C-CcEEEEEEEEEC-CCCEEEEEEEECCC
Confidence 55543211 11 1 124567777786 45787777655443
No 42
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.13 E-value=0.093 Score=41.89 Aligned_cols=142 Identities=15% Similarity=0.062 Sum_probs=84.2
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCC-CcceEEEEEecC--CCCCceeEEEEEEEe--ecC
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDG-GVGTILHLKFTP--GTPGFAGYKEKFIEI--DNE 78 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg-~~GsiR~~~~~~--g~~~~~~~kErl~~i--D~~ 78 (155)
+..+..+++|++++|+++. |..+ .++| ++ ..++++++.-+ ..+ +-.+.++. -..+-..+--+-... +..
T Consensus 79 fk~e~~vd~s~~~v~dlL~--D~~~-R~~WD~~-~~e~evI~~id~d~~-iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~ 153 (235)
T cd08873 79 FCVELKVQTCASDAFDLLS--DPFK-RPEWDPH-GRSCEEVKRVGEDDG-IYHTTMPSLTSEKPNDFVLLVSRRKPATDG 153 (235)
T ss_pred EEEEEEecCCHHHHHHHHh--Ccch-hhhhhhc-ccEEEEEEEeCCCcE-EEEEEcCCCCCCCCceEEEEEEEEeccCCC
Confidence 5677889999999999998 8876 6999 86 88999887422 223 23333322 111112332222221 222
Q ss_pred C-CeEEEEEEe-------CCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCcc-hhHHHHHHHHHHHHHH
Q 031668 79 R-RVKVTDAVE-------GGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEAAANASF-VSTDAVAKIAEMAKNY 149 (155)
Q Consensus 79 ~-~~~~Y~v~e-------g~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~-~~~~~~~~~~k~~e~~ 149 (155)
+ ..+..+-+. .+.. ....+.+-..+.|.++|+|.++.....+|.--.=..... ..-......|+.-++|
T Consensus 154 ~~~~I~~~SV~h~~~Pp~kgyV--R~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (235)
T cd08873 154 DPYKVAFRSVTLPRVPQTPGYS--RTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYVTCNLAGLSALYCRTFHCCEQF 231 (235)
T ss_pred CeEEEEEeeeecccCCCCCCeE--EEEEEeeeEEEEECCCCcEEEEEEEEcCCCccceeeecchhhhHHHHHHHHHHHHH
Confidence 2 233333333 1111 355678888999998889999988888774321011111 2345566778888888
Q ss_pred HhhC
Q 031668 150 LLNN 153 (155)
Q Consensus 150 l~~~ 153 (155)
|..|
T Consensus 232 ~~~~ 235 (235)
T cd08873 232 LVTN 235 (235)
T ss_pred hccC
Confidence 8764
No 43
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=97.04 E-value=0.046 Score=40.38 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=72.7
Q ss_pred EEEEEEecCC-------HHHHhhhhhcCccccccccc--CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEe
Q 031668 5 VSHELEVNVP-------AAQAWELYGTIKLAKLVEKE--SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEI 75 (155)
Q Consensus 5 ~~~e~~i~ap-------a~kvW~~~~~~d~~~~~p~~--P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~i 75 (155)
+++.++||-| .+++|.-+.. -. . -|.. |+ +.+|++++.++. --.|.++|+.. .++|++. +
T Consensus 2 ~~~tvpIN~p~~~p~LTr~QlW~GL~~-ka-r-~p~~Fvp~-i~~c~Vl~e~~~-~l~Rel~f~~~-----~v~e~vt-~ 70 (141)
T cd08863 2 FEHTVPINDPGNIPTLTRAQLWRGLVL-RA-R-EPQLFVPG-LDRCEVLSESGT-VLERELTFGPA-----KIRETVT-L 70 (141)
T ss_pred ccEEEecCCCCCCCccCHHHHHhHHHh-hh-C-Cchhcccc-cceEEEEecCCC-EEEEEEEECCc-----eEEEEEE-e
Confidence 4566666643 5699998752 11 2 3555 76 899999987643 46799999876 7999988 5
Q ss_pred ecCCCeEEEEEEe-CCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCc-ccCCcchhHHHHHHHHHHHH
Q 031668 76 DNERRVKVTDAVE-GGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEA-AANASFVSTDAVAKIAEMAK 147 (155)
Q Consensus 76 D~~~~~~~Y~v~e-g~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~-~~~~~~~~~~~~~~~~k~~e 147 (155)
.....+.|.+-. |+. . ++.+....+ |. +-.++.|+..... ++++...+.+...++++.-.
T Consensus 71 -~~~~~v~f~~~~~g~~-------l--~~~iee~~~-g~-L~lrf~ye~~~p~~~~~e~~~~~~~~~~a~~~a~ 132 (141)
T cd08863 71 -EPPSRVHFLQADAGGT-------L--TNTIEEPED-GA-LYLRFVYETTLPEVAEEEAKAYQEIVKQAYKEAD 132 (141)
T ss_pred -cCCcEEEEEecCCCCe-------E--EEEeccCCC-Cc-EEEEEEEEecCCCcCchHHHHHHHHHHHHHHHHH
Confidence 455677888765 221 1 222222223 33 3556666665432 22333356777777776554
No 44
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=97.04 E-value=0.0052 Score=45.46 Aligned_cols=110 Identities=14% Similarity=0.211 Sum_probs=77.1
Q ss_pred eEEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeE
Q 031668 4 QVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVK 82 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~ 82 (155)
++..+.-+..+|+++++++. |... .|.. |- -.+.++.+.++ ...+-.+..+-. +--....=|.. +++..+.|
T Consensus 3 ~~~~s~lv~y~a~~mF~LV~--dV~~-YP~FlP~-C~~s~v~~~~~-~~l~A~l~V~~k-~i~e~F~Trv~-~~~~~~~I 75 (146)
T COG2867 3 QIERTALVPYSASQMFDLVN--DVES-YPEFLPW-CSASRVLERNE-RELIAELDVGFK-GIRETFTTRVT-LKPTARSI 75 (146)
T ss_pred eeEeeeeccCCHHHHHHHHH--HHHh-Cchhccc-cccceEeccCc-ceeEEEEEEEhh-heeeeeeeeee-ecCchhhh
Confidence 67788889999999999998 8765 6888 85 55666666663 234555555433 21123333333 55555666
Q ss_pred EEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcC
Q 031668 83 VTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKE 125 (155)
Q Consensus 83 ~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~ 125 (155)
--++++|+ ++...++.+++|.++++|.|+..++|+...
T Consensus 76 ~~~l~~GP-----Fk~L~~~W~F~pl~~~~ckV~f~ldfeF~s 113 (146)
T COG2867 76 DMKLIDGP-----FKYLKGGWQFTPLSEDACKVEFFLDFEFKS 113 (146)
T ss_pred hhhhhcCC-----hhhhcCceEEEECCCCceEEEEEEEeeehh
Confidence 66666655 556788999999888899999999999864
No 45
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.03 E-value=0.011 Score=42.71 Aligned_cols=122 Identities=11% Similarity=0.111 Sum_probs=62.0
Q ss_pred ecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCC-eEEEEEEe
Q 031668 11 VNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERR-VKVTDAVE 88 (155)
Q Consensus 11 i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~-~~~Y~v~e 88 (155)
++||+++||+++- |...+..+| +. ...+++..| |..+.+ .+ .+.=+..++|+.+| .++++.-+
T Consensus 1 f~ap~e~Vw~A~T--dp~~l~~w~~~~-~~~~d~~~G----G~f~~~---~~-----~~~G~~~ev~pp~rlv~tw~~~~ 65 (132)
T PTZ00220 1 FYVPPEVLYNAFL--DAYTLTRLSLGS-PAEMDAKVG----GKFSLF---NG-----SVEGEFTELEKPKKIVQKWRFRD 65 (132)
T ss_pred CCCCHHHHHHHHc--CHHHHHHHhcCC-CccccCCcC----CEEEEe---cC-----ceEEEEEEEcCCCEEEEEEecCC
Confidence 4799999999997 765433344 42 222222222 233332 22 13336666755443 23444422
Q ss_pred CCccCcCeeEEEEEEEEEeeCCCceEEEEEEE-EEEcCCccc-CCcchhHHHHHH-HHHHHHHHHh
Q 031668 89 GGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIE-YELKEEAAA-NASFVSTDAVAK-IAEMAKNYLL 151 (155)
Q Consensus 89 g~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~-y~~~~~~~~-~~~~~~~~~~~~-~~k~~e~~l~ 151 (155)
.+.. .. -..|+++.+.++|+|.++.+-. +......+. .......+.... ++..|++||-
T Consensus 66 ~~~~--~~--s~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ld~L~~~l~ 127 (132)
T PTZ00220 66 WEED--VY--SKVTIEFRAVEEDHTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNFLDRFEKILG 127 (132)
T ss_pred CCCC--Cc--eEEEEEEEeCCCCcEEEEEEEecCccccccCCCchhhHHHhChHHHHHHHHHHHhC
Confidence 1211 12 2478888887666788887766 322211111 001113345555 5778887763
No 46
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.94 E-value=0.085 Score=39.25 Aligned_cols=121 Identities=12% Similarity=0.088 Sum_probs=60.1
Q ss_pred eEEEEEEecCCH--------HHHhhhhhcCccccccccc--CCceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEE
Q 031668 4 QVSHELEVNVPA--------AQAWELYGTIKLAKLVEKE--SDTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFI 73 (155)
Q Consensus 4 ~~~~e~~i~apa--------~kvW~~~~~~d~~~~~p~~--P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~ 73 (155)
++.+.++||-|. ++||+-+. --.. -|.. |. +.+|++++-. +..-.|.++|+.. .++|++.
T Consensus 1 n~~htvpIN~p~~~~~~LTr~QlW~GL~--~kar-~p~~Fvp~-i~~c~Vl~e~-~~~~~R~v~fg~~-----~v~E~v~ 70 (149)
T PF08982_consen 1 NFEHTVPINPPGASLPVLTREQLWRGLV--LKAR-NPQLFVPG-IDSCEVLSES-DTVLTREVTFGGA-----TVRERVT 70 (149)
T ss_dssp EEEEEEE------------HHHHHHHHH--HHHH--GGGT-TT---EEEEEEE--SSEEEEEEEETTE-----EEEEEEE
T ss_pred CccEEEecCCCcccCCccCHHHHHHHHH--HHHh-ChhhCccc-cCeEEEEecC-CCeEEEEEEECCc-----EEEEEEE
Confidence 356777776655 47999886 3333 2444 85 8999998665 3467899999433 8999988
Q ss_pred EeecCCCeEEEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCC-cc--cCCcchhHHHHHHHHHHHH
Q 031668 74 EIDNERRVKVTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEE-AA--ANASFVSTDAVAKIAEMAK 147 (155)
Q Consensus 74 ~iD~~~~~~~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~-~~--~~~~~~~~~~~~~~~k~~e 147 (155)
.. ....+.| ... .=.+...+|. ...+| -+-.++.|+-... .+ .++...+.+.+..+++...
T Consensus 71 ~~--~~~~V~f---~~~----~Gs~lt~~I~--e~~~g--~L~ltf~ye~~~p~~~~gs~e~~~~~~~~~~ay~~a~ 134 (149)
T PF08982_consen 71 LY--PPERVDF---AQH----DGSSLTNIIS--EPEPG--DLFLTFTYEWRLPGVEPGSPEAKAYQEFYKSAYKEAD 134 (149)
T ss_dssp EE--TTTEEEE---SSS----BEEEEEEEEE--EEETT--EEEEEEEEEEE----S---------BHHHHHHHHHHH
T ss_pred Ee--CCcEEEE---EcC----CCCEEEEEEe--cCCCC--cEEEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 43 4446677 111 1223344444 32333 3455555665422 11 2332345566666665443
No 47
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=96.19 E-value=0.098 Score=38.90 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=62.6
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccc---ccccCC---ceeeEEEEcCCCCcceEEEE-EecC-CC--------CCceeE
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKL---VEKESD---TVEEIEIVEGDGGVGTILHL-KFTP-GT--------PGFAGY 68 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~---~p~~P~---~v~s~~~~eGdg~~GsiR~~-~~~~-g~--------~~~~~~ 68 (155)
+++++++++|+|+||++|. |..-+ +..... .+.+++ .+|+| . .++.- .++. .+ +....+
T Consensus 1 f~~~~~~~~~~~~v~~~~~--d~~y~~~r~~~~g~~~~~~~~~~-~~~~g-~-~v~~~~~v~~~~lP~~~~k~v~~~l~v 75 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFT--DEDYWEARCAALGADNAEVESFE-VDGDG-V-RVTVRQTVPADKLPSAARKFVGGDLRV 75 (159)
T ss_pred CeEEEEcCCCHHHHHHHHc--CHHHHHHHHHHcCCCCceEEEEE-EcCCe-E-EEEEEEecChhhCCHHHHHhcCCCeEE
Confidence 3678999999999999998 54322 122222 244444 34443 1 11111 1211 11 111123
Q ss_pred E--EEEEEeecCCCeEEEEEEe-CCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEc
Q 031668 69 K--EKFIEIDNERRVKVTDAVE-GGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELK 124 (155)
Q Consensus 69 k--Erl~~iD~~~~~~~Y~v~e-g~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~ 124 (155)
+ |+-...++..++.+|++-- |.+. +.++++.+.|.+ ++|.+.+..+....
T Consensus 76 ~~~e~w~~~~~g~~~g~~~~~~~G~P~-----~~~G~~~L~~~~-~gt~~~~~g~v~v~ 128 (159)
T PF10698_consen 76 TRTETWTPLDDGRRTGTFTVSIPGAPV-----SISGTMRLRPDG-GGTRLTVEGEVKVK 128 (159)
T ss_pred EEEEEEecCCCCeEEEEEEEEecCceE-----EEEEEEEEecCC-CCEEEEEEEEEEEE
Confidence 3 2232346777888888643 3332 589999999954 47999999888874
No 48
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=95.82 E-value=0.66 Score=36.18 Aligned_cols=118 Identities=11% Similarity=0.013 Sum_probs=70.1
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCC-CcceEEEEEec-C--CCCCc-eeEEEEEEEeecC
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDG-GVGTILHLKFT-P--GTPGF-AGYKEKFIEIDNE 78 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg-~~GsiR~~~~~-~--g~~~~-~~~kErl~~iD~~ 78 (155)
+..+.++++|++++|+++. |..+ .++| + .++++++++--+ .. .+-++.+. + ...+. .++--+-...+..
T Consensus 47 ~~ge~~v~as~~~v~~ll~--D~~~-r~~Wd~-~~~~~~vl~~~~~d~-~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~ 121 (205)
T cd08874 47 FLGAGVIKAPLATVWKAVK--DPRT-RFLYDT-MIKTARIHKTFTEDI-CLVYLVHETPLCLLKQPRDFCCLQVEAKEGE 121 (205)
T ss_pred EEEEEEEcCCHHHHHHHHh--Ccch-hhhhHH-hhhheeeeeecCCCe-EEEEEEecCCCCCCCCCCeEEEEEEEEECCC
Confidence 4467789999999999998 9876 6999 8 499999987633 32 23333322 1 10011 2333332222233
Q ss_pred CCeEEEEEEeCCccC------cCeeEEEEEEEEEee---CCCceEEEEEEEEEEcCCc
Q 031668 79 RRVKVTDAVEGGYLD------VGFTLFRVIFEIIEK---GSDSCIIRSIIEYELKEEA 127 (155)
Q Consensus 79 ~~~~~Y~v~eg~~~~------~~~~~y~~t~~v~~~---~~g~s~v~W~~~y~~~~~~ 127 (155)
...+.-+-++-+.+. .....+.+-..++|. ++|.|.++..+..++.+++
T Consensus 122 ~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~ 179 (205)
T cd08874 122 LSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPD 179 (205)
T ss_pred cEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCC
Confidence 323333323221110 023446677778887 7778999999999987543
No 49
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=94.95 E-value=1 Score=33.12 Aligned_cols=119 Identities=14% Similarity=0.049 Sum_probs=67.2
Q ss_pred eEEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCC--CCCceeEEEEEEEeecCCC
Q 031668 4 QVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPG--TPGFAGYKEKFIEIDNERR 80 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g--~~~~~~~kErl~~iD~~~~ 80 (155)
.+..+.++++|++++|+++. |... .++| |. +.++++++-.+..-.+....+... ..+-..+--+-...++++.
T Consensus 40 ~~k~~~~i~~~~~~v~~~l~--d~~~-~~~w~~~-~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~ 115 (193)
T cd00177 40 LLKAEGVIPASPEQVFELLM--DIDL-RKKWDKN-FEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGT 115 (193)
T ss_pred eEEEEEEECCCHHHHHHHHh--CCch-hhchhhc-ceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCe
Confidence 35678889999999999998 7544 6899 86 888888876432233444444322 1111122222222233222
Q ss_pred -eEEEEEEeCCccC---cCe--eEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031668 81 -VKVTDAVEGGYLD---VGF--TLFRVIFEIIEKGSDSCIIRSIIEYELKEE 126 (155)
Q Consensus 81 -~~~Y~v~eg~~~~---~~~--~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~ 126 (155)
.+...=++.+... ..+ ..+.+-+.++|.++++|.+++.+..++.+.
T Consensus 116 ~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~ 167 (193)
T cd00177 116 YVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGS 167 (193)
T ss_pred EEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCC
Confidence 2222222221010 011 123455667888778899999999998764
No 50
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=94.57 E-value=1.9 Score=34.46 Aligned_cols=115 Identities=16% Similarity=-0.018 Sum_probs=66.5
Q ss_pred eEEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCC-CcceEEEEEecCCCC--Cc-eeEEEEEEEeecC
Q 031668 4 QVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDG-GVGTILHLKFTPGTP--GF-AGYKEKFIEIDNE 78 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg-~~GsiR~~~~~~g~~--~~-~~~kErl~~iD~~ 78 (155)
.+..+..+++|++++++++. |..+ .++| ++ +.++++++--+ .- .+..+...+-.+ .. ..+--+-..-+.+
T Consensus 82 ~fK~e~~vd~s~e~v~~lL~--D~~~-r~~Wd~~-~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~ 156 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLLLS--DLRR-RPEWDKH-YRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQDFVILASRRKPCD 156 (240)
T ss_pred EEEEEEEEcCCHHHHHHHHh--Chhh-hhhhHhh-ccEEEEEEecCCCc-EEEEEecCCCCCCCCCCeEEEEEEEEeccC
Confidence 35677889999999999998 9876 6999 86 88999886532 22 255554332201 11 1222211112222
Q ss_pred CC---eEEEEEEeCCccC--c---CeeEEEEEEEEEeeCCCceEEEEEEEEEE
Q 031668 79 RR---VKVTDAVEGGYLD--V---GFTLFRVIFEIIEKGSDSCIIRSIIEYEL 123 (155)
Q Consensus 79 ~~---~~~Y~v~eg~~~~--~---~~~~y~~t~~v~~~~~g~s~v~W~~~y~~ 123 (155)
+. .+..+.+.-+-.. . ...++.+-+.+.|.+++.|.+.+...-+|
T Consensus 157 ~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP 209 (240)
T cd08913 157 NGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP 209 (240)
T ss_pred CCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC
Confidence 22 1333333322111 0 13446677888898888899888665554
No 51
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=94.41 E-value=1.8 Score=33.52 Aligned_cols=141 Identities=13% Similarity=0.097 Sum_probs=74.7
Q ss_pred EEEEEEecCCHHHHh-hhhhcCccccccccc-CCceeeEEEEcCCC-CcceEEEEEecC-C--CCCceeEEEEEEEeecC
Q 031668 5 VSHELEVNVPAAQAW-ELYGTIKLAKLVEKE-SDTVEEIEIVEGDG-GVGTILHLKFTP-G--TPGFAGYKEKFIEIDNE 78 (155)
Q Consensus 5 ~~~e~~i~apa~kvW-~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg-~~GsiR~~~~~~-g--~~~~~~~kErl~~iD~~ 78 (155)
+..+.++++|+++++ .++- |..+ .++| +. +.++++++--+ ..=-++.+..+. + +.+-..+--|...-+..
T Consensus 51 ~k~e~~i~~~~~~l~~~l~~--d~e~-~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~ 126 (209)
T cd08905 51 FRLEVVVDQPLDNLYSELVD--RMEQ-MGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGS 126 (209)
T ss_pred EEEEEEecCCHHHHHHHHHh--chhh-hceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCC
Confidence 667889999999999 5554 6555 6999 86 88888775532 111122222111 1 11112333233323333
Q ss_pred CCeEEEEEEeCCccC-----cCeeEEEEEEEEEeeCC--CceEEEEEEEEEEcCCcccCCcc---hhHHHHHHHHHHHHH
Q 031668 79 RRVKVTDAVEGGYLD-----VGFTLFRVIFEIIEKGS--DSCIIRSIIEYELKEEAAANASF---VSTDAVAKIAEMAKN 148 (155)
Q Consensus 79 ~~~~~Y~v~eg~~~~-----~~~~~y~~t~~v~~~~~--g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~ 148 (155)
+..+.....+-+.+. .....+.+-..++|.++ +.|.++|.+-.++.+.- |... .+.+.....++.+.+
T Consensus 127 ~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~i--P~~lvN~~~~~~~~~~~~~Lr~ 204 (209)
T cd08905 127 TCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWL--PKSIINQVLSQTQVDFANHLRQ 204 (209)
T ss_pred cEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCC--CHHHHHHHhHHhHHHHHHHHHH
Confidence 322211112222211 01334556677788765 78999999999987663 3211 234444455555555
Q ss_pred HHh
Q 031668 149 YLL 151 (155)
Q Consensus 149 ~l~ 151 (155)
++.
T Consensus 205 ~~~ 207 (209)
T cd08905 205 RMA 207 (209)
T ss_pred HHh
Confidence 553
No 52
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=94.27 E-value=2.1 Score=34.19 Aligned_cols=115 Identities=15% Similarity=0.030 Sum_probs=65.4
Q ss_pred eEEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecC--CCCCceeEEEEEEEeec-CC
Q 031668 4 QVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTP--GTPGFAGYKEKFIEIDN-ER 79 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~--g~~~~~~~kErl~~iD~-~~ 79 (155)
.+..+.++++|++++++++. |..+ .++| ++ ..++++++.-+.---+..+.-.+ ...+-..+--+-..... .+
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~--D~~~-r~~Wd~~-~~e~~vI~qld~~~~vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg 154 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLS--DFTK-RPLWDPH-FLSCEVIDWVSEDDQIYHITCPIVNNDKPKDLVVLVSRRKPLKDG 154 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHh--Chhh-hchhHHh-hceEEEEEEeCCCcCEEEEecCCCCCCCCceEEEEEEEEecCCCC
Confidence 46778889999999999999 9977 6999 86 88888886532111256655322 11111122211111112 22
Q ss_pred --CeEEEEEEeCCccC-----cCeeE-EEEEEEEEeeCCCceEEEEEEEEEE
Q 031668 80 --RVKVTDAVEGGYLD-----VGFTL-FRVIFEIIEKGSDSCIIRSIIEYEL 123 (155)
Q Consensus 80 --~~~~Y~v~eg~~~~-----~~~~~-y~~t~~v~~~~~g~s~v~W~~~y~~ 123 (155)
..+.-+-+.-+.+. ..... ..+- .++|.++++|.++....-+|
T Consensus 155 ~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP 205 (236)
T cd08914 155 NTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA 205 (236)
T ss_pred CEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC
Confidence 22222222221111 02334 3444 77898888999999988887
No 53
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=93.97 E-value=2.3 Score=32.96 Aligned_cols=139 Identities=14% Similarity=0.034 Sum_probs=72.4
Q ss_pred EEEEEEecCCHHHHhhhhhcCcccc-ccccc-CCceeeEEEEcCC-CCcceEEEEEec-C-C--CCCceeEEEEE-EEee
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAK-LVEKE-SDTVEEIEIVEGD-GGVGTILHLKFT-P-G--TPGFAGYKEKF-IEID 76 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~-~~p~~-P~~v~s~~~~eGd-g~~GsiR~~~~~-~-g--~~~~~~~kErl-~~iD 76 (155)
+..+..++++++++++++. |..+ .-++| +. +.++++++-- +...-+|. ..+ . + ..+-..+--|- ...+
T Consensus 48 ~k~e~~i~~s~~~~~~~l~--d~~~~~r~~W~~~-~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~ 123 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLK--PAAGGLRVKWDQN-VKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYE 123 (208)
T ss_pred EEEEEEecCCHHHHHHHHH--hccchhhhhhhhc-cccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecC
Confidence 6678889999999999997 6533 23799 86 8888888663 22222222 222 1 0 11111222222 2223
Q ss_pred cCCCeEEEEEEeCCccCcCeeE--------EEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCcc---hhHHHHHHHHHH
Q 031668 77 NERRVKVTDAVEGGYLDVGFTL--------FRVIFEIIEKGSDSCIIRSIIEYELKEEAAANASF---VSTDAVAKIAEM 145 (155)
Q Consensus 77 ~~~~~~~Y~v~eg~~~~~~~~~--------y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~ 145 (155)
+..-.+.+..++-+.+. +-++ +-..++.+|.++++|.++|.+..++.+.- |... ...+.....++.
T Consensus 124 d~~i~i~~~sv~h~~~P-~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~i--P~~lvn~~~~~~~~~~~~~ 200 (208)
T cd08903 124 DGTISSNATNVEHPLCP-PQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYL--PQTVVDSFFPASMAEFYNN 200 (208)
T ss_pred CceEEEeEEeccCCCCC-CCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCc--CHHHHHHHhhHHHHHHHHH
Confidence 33333333333332211 1111 22334444546668999999999987653 3221 123444455555
Q ss_pred HHHHH
Q 031668 146 AKNYL 150 (155)
Q Consensus 146 ~e~~l 150 (155)
+.++|
T Consensus 201 Lr~~~ 205 (208)
T cd08903 201 LTKAV 205 (208)
T ss_pred HHHHH
Confidence 55555
No 54
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=93.20 E-value=3.1 Score=32.11 Aligned_cols=139 Identities=15% Similarity=0.129 Sum_probs=76.9
Q ss_pred eEEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCCCCc-eeEEEEE---EEeec-
Q 031668 4 QVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGTPGF-AGYKEKF---IEIDN- 77 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~-~~~kErl---~~iD~- 77 (155)
.+..+.++++|++++.+++. |. .+.++| |.. .+++.++..+..-.+-.+.+ . .|. -.-||=+ ..+|.
T Consensus 47 ~~k~e~~i~~~~~~~~~vl~--d~-~~~~~W~p~~-~~~~~l~~~~~~~~v~y~~~--~-~PwPv~~RD~v~~~~~~~~~ 119 (215)
T cd08877 47 SLRMEGEIDGPLFNLLALLN--EV-ELYKTWVPFC-IRSKKVKQLGRADKVCYLRV--D-LPWPLSNREAVFRGFGVDRL 119 (215)
T ss_pred EEEEEEEecCChhHeEEEEe--hh-hhHhhhcccc-eeeEEEeecCCceEEEEEEE--e-CceEecceEEEEEEEEEeee
Confidence 46678889999999999998 77 468999 974 44454544322112222222 1 110 0112222 11221
Q ss_pred -CCCeEEEEE--EeCCc---------cC------cCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCcc---hhH
Q 031668 78 -ERRVKVTDA--VEGGY---------LD------VGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEAAANASF---VST 136 (155)
Q Consensus 78 -~~~~~~Y~v--~eg~~---------~~------~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~ 136 (155)
++..+...+ +..+. +. .....+.+-+.++|.++++|.+++.+..+|.+.- .|.-. ..+
T Consensus 120 ~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~-IP~~liN~~~k 198 (215)
T cd08877 120 EENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSL-VPKSLLNFVAR 198 (215)
T ss_pred ccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCccc-CCHHHHHHHHH
Confidence 444443322 21100 10 0235577778889998889999999988876551 23221 345
Q ss_pred HHHHHHHHHHHHHH
Q 031668 137 DAVAKIAEMAKNYL 150 (155)
Q Consensus 137 ~~~~~~~k~~e~~l 150 (155)
.....++..+.+.+
T Consensus 199 ~~~~~~~~~l~k~~ 212 (215)
T cd08877 199 KFAGLLFEKIQKAA 212 (215)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666544
No 55
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=91.99 E-value=3.8 Score=30.20 Aligned_cols=134 Identities=11% Similarity=0.224 Sum_probs=78.9
Q ss_pred ceEEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEec---CCCCCceeEEEEEEE--ee
Q 031668 3 GQVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFT---PGTPGFAGYKEKFIE--ID 76 (155)
Q Consensus 3 ~~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~---~g~~~~~~~kErl~~--iD 76 (155)
|.+.+...|++|.+-||+..++.| + +..+ |..+ +-+-+|+ .++..-++.+. -++++--.-+-|+++ +|
T Consensus 2 ~tF~~~~~i~aP~E~VWafhsrpd--~-lq~LTppw~--VV~p~g~-eitqgtri~m~l~pfglp~~~tW~Arhte~~~d 75 (153)
T COG4276 2 GTFVYRTTITAPHEMVWAFHSRPD--A-LQRLTPPWI--VVLPLGS-EITQGTRIAMGLTPFGLPAGLTWVARHTESGFD 75 (153)
T ss_pred cceEEeeEecCCHHHHhhhhcCcc--H-HHhcCCCcE--EeccCCC-cccceeeeeecceeecCCCCceEEEEeeecccC
Confidence 577888999999999999998544 3 5677 7533 3333453 22222333321 121111244566666 53
Q ss_pred cCCCeEEEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCcc---hhHHHHHHHHHHHHH
Q 031668 77 NERRVKVTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEAAANASF---VSTDAVAKIAEMAKN 148 (155)
Q Consensus 77 ~~~~~~~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~ 148 (155)
.-..++=..+.|+. |.-+.+-+-++.+.+ |++++.=++.|+...+. .-+-. -..-.+..||..-+.
T Consensus 76 -~~~~FtDv~i~gPf---p~~~WrHtH~F~~eg-g~TvliD~Vsye~p~g~-~~~~~g~~l~q~~l~~mFr~Rhs 144 (153)
T COG4276 76 -NGSRFTDVCITGPF---PALNWRHTHNFVDEG-GGTVLIDSVSYELPAGT-LTGMFGYRLTQLILDLMFRSRHS 144 (153)
T ss_pred -CcceeeeeeecCCc---cceeeEEEeeeecCC-CcEEEEeeEEeeccCcc-eechhhhhhHHHHHHHHHHHHHH
Confidence 33445555666665 444789999998865 47999999999987652 11111 134455566654443
No 56
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=91.88 E-value=4.6 Score=30.95 Aligned_cols=143 Identities=8% Similarity=-0.023 Sum_probs=76.4
Q ss_pred EEEEEEecCCHHHHhhh-hhcCccccccccc-CCceeeEEEEcCC-CCcceEEEEEecCCCC---CceeEEEEEEEeecC
Q 031668 5 VSHELEVNVPAAQAWEL-YGTIKLAKLVEKE-SDTVEEIEIVEGD-GGVGTILHLKFTPGTP---GFAGYKEKFIEIDNE 78 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~-~~~~d~~~~~p~~-P~~v~s~~~~eGd-g~~GsiR~~~~~~g~~---~~~~~kErl~~iD~~ 78 (155)
+..+..+++|+++++.. +. |... .++| +. +..+++++.- +..--++.+....... +-.++--|-...++.
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~--d~~~-~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~ 125 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVL--NVES-LPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIREN 125 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHc--Cccc-cceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCC
Confidence 56788899999999864 44 6655 6999 86 7777777553 2211122222111101 111222232223333
Q ss_pred CCeEEEEEEeCCccC--c---CeeEEEEEEEEEeeCC--CceEEEEEEEEEEcCCcccC-CcchhHHHHHHHHHHHHHHH
Q 031668 79 RRVKVTDAVEGGYLD--V---GFTLFRVIFEIIEKGS--DSCIIRSIIEYELKEEAAAN-ASFVSTDAVAKIAEMAKNYL 150 (155)
Q Consensus 79 ~~~~~Y~v~eg~~~~--~---~~~~y~~t~~v~~~~~--g~s~v~W~~~y~~~~~~~~~-~~~~~~~~~~~~~k~~e~~l 150 (155)
...+...-++-+-.. . ....+.+-+.++|.++ ++|.++|.+..++.+--+.- -...........++.+.+++
T Consensus 126 ~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP~~lvN~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08868 126 CYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLPQYLVDQALASVLLDFMKHLRKRI 205 (208)
T ss_pred eEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCcceeeehhhHHHHHHHHHHHHHHH
Confidence 323333323311110 0 1233556677788754 57999999999987653221 11124566667777777776
Q ss_pred h
Q 031668 151 L 151 (155)
Q Consensus 151 ~ 151 (155)
.
T Consensus 206 ~ 206 (208)
T cd08868 206 A 206 (208)
T ss_pred h
Confidence 4
No 57
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=91.41 E-value=5.5 Score=30.90 Aligned_cols=139 Identities=11% Similarity=0.064 Sum_probs=72.6
Q ss_pred eEEEEEEecCCHHHHh-hhhhcCccccccccc-CCceeeEEEEcCCCCcce-EEEEEecCC---CCCceeEEEEEEEeec
Q 031668 4 QVSHELEVNVPAAQAW-ELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGT-ILHLKFTPG---TPGFAGYKEKFIEIDN 77 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW-~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~Gs-iR~~~~~~g---~~~~~~~kErl~~iD~ 77 (155)
.+..+.++++|++++| .++. |..+ .++| ++ +.++++++--+.-=. ++.+..+.. +.+-.++--|-..-+.
T Consensus 50 ~fk~~~~v~~~~~~l~~~ll~--D~~~-~~~W~~~-~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~ 125 (209)
T cd08906 50 TFILKAFMQCPAELVYQEVIL--QPEK-MVLWNKT-VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRR 125 (209)
T ss_pred EEEEEEEEcCCHHHHHHHHHh--Chhh-ccccCcc-chhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecC
Confidence 3677888999999998 5777 8876 6999 86 888888765321001 122222211 0111233333332333
Q ss_pred CCC-eEEEEEEeCCccCcCeeEE-EEE-----EEEEe--eCCCceEEEEEEEEEEcCCcccCCc---chhHHHHHHHHHH
Q 031668 78 ERR-VKVTDAVEGGYLDVGFTLF-RVI-----FEIIE--KGSDSCIIRSIIEYELKEEAAANAS---FVSTDAVAKIAEM 145 (155)
Q Consensus 78 ~~~-~~~Y~v~eg~~~~~~~~~y-~~t-----~~v~~--~~~g~s~v~W~~~y~~~~~~~~~~~---~~~~~~~~~~~k~ 145 (155)
.+. ++..++ .-+.+. +.+.| ++. +-+.| .++++|.++|.+..++.+.- |.- ..+.+.....++.
T Consensus 126 ~~~i~~~~sv-~~~~~P-~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~l--P~~lvN~~~~~~~~~~~~~ 201 (209)
T cd08906 126 DRYVSAGIST-THSHKP-PLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGRL--PRYLIHQSLAATMFEFASH 201 (209)
T ss_pred CcEEEEEEEE-ecCCCC-CCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCCC--CHHHHHHHHHHHHHHHHHH
Confidence 331 222233 222221 22222 232 22334 45678999999999987753 321 1234444455555
Q ss_pred HHHHH
Q 031668 146 AKNYL 150 (155)
Q Consensus 146 ~e~~l 150 (155)
+.+++
T Consensus 202 LR~~~ 206 (209)
T cd08906 202 LRQRI 206 (209)
T ss_pred HHHHH
Confidence 55554
No 58
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=91.28 E-value=5.6 Score=30.66 Aligned_cols=141 Identities=11% Similarity=-0.025 Sum_probs=76.0
Q ss_pred eEEEEEEe-cCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCC--cceEEEEE-ecCCCCCceeEEEEEEEee-c
Q 031668 4 QVSHELEV-NVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGG--VGTILHLK-FTPGTPGFAGYKEKFIEID-N 77 (155)
Q Consensus 4 ~~~~e~~i-~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~--~GsiR~~~-~~~g~~~~~~~kErl~~iD-~ 77 (155)
.+..+.++ ++|++.+++++. |... .++| +. +.++++++-++. .--++... ++--..+=.++--|-...| +
T Consensus 51 ~~k~~~~~~~~s~~~~~~~l~--D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~ 126 (209)
T cd08870 51 EYLVRGVFEDCTPELLRDFYW--DDEY-RKKWDET-VIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDD 126 (209)
T ss_pred EEEEEEEEcCCCHHHHHHHHc--Chhh-Hhhhhhh-eeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCC
Confidence 35667778 679999999998 8755 6899 86 667777765532 22222211 1110011123433433344 3
Q ss_pred CCCeEEEEEEeCCcc----CcCeeEEEEEEEEEee--CCCceEEEEEEEEEEcCCcccCCcc---hhHHHHHHHHHHHHH
Q 031668 78 ERRVKVTDAVEGGYL----DVGFTLFRVIFEIIEK--GSDSCIIRSIIEYELKEEAAANASF---VSTDAVAKIAEMAKN 148 (155)
Q Consensus 78 ~~~~~~Y~v~eg~~~----~~~~~~y~~t~~v~~~--~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~ 148 (155)
....+....+.-+.. ...+..|.+...++|. ++++|.+.++.--++.+. .|.-. .....+-..++.|.+
T Consensus 127 ~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~--IP~wlvN~~~~~~~~~~l~~l~~ 204 (209)
T cd08870 127 RSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG--IPRELAKLAVKRGMPGFLKKLEN 204 (209)
T ss_pred CEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC--CCHHHHHHHHHhhhHHHHHHHHH
Confidence 333333333322111 1146778899999998 667788888766665333 44321 234444455555555
Q ss_pred HH
Q 031668 149 YL 150 (155)
Q Consensus 149 ~l 150 (155)
.+
T Consensus 205 a~ 206 (209)
T cd08870 205 AL 206 (209)
T ss_pred HH
Confidence 44
No 59
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=88.69 E-value=9.4 Score=29.43 Aligned_cols=110 Identities=15% Similarity=0.008 Sum_probs=63.3
Q ss_pred EEEEEEe-cCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEe----cCCCCCceeEEEEEEEeecC
Q 031668 5 VSHELEV-NVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKF----TPGTPGFAGYKEKFIEIDNE 78 (155)
Q Consensus 5 ~~~e~~i-~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~----~~g~~~~~~~kErl~~iD~~ 78 (155)
+..+.++ ++|++.+.+++. |... .++| +. +.++++++.+...|+ +.+.+ +--..+=..+--|-...|++
T Consensus 47 ~k~~~~~~d~s~~~~~~~~~--D~~~-r~~Wd~~-~~~~~~le~~~~~~~-~i~y~~~~~P~P~s~RD~V~~r~~~~~~~ 121 (207)
T cd08911 47 YKVYGSFDDVTARDFLNVQL--DLEY-RKKWDAT-AVELEVVDEDPETGS-EIIYWEMQWPKPFANRDYVYVRRYIIDEE 121 (207)
T ss_pred EEEEEEEcCCCHHHHHHHHh--CHHH-HHHHHhh-heeEEEEEccCCCCC-EEEEEEEECCCCCCCccEEEEEEEEEcCC
Confidence 5555666 999999999998 8755 6999 86 777888876422122 22222 10001112555555557766
Q ss_pred CCeEEE--EEEeC------CccCcCeeEEEEEEEEEeeC---CCceEEEEEEE
Q 031668 79 RRVKVT--DAVEG------GYLDVGFTLFRVIFEIIEKG---SDSCIIRSIIE 120 (155)
Q Consensus 79 ~~~~~Y--~v~eg------~~~~~~~~~y~~t~~v~~~~---~g~s~v~W~~~ 120 (155)
+..+.- .-++- .-.. .+.+|.+...+.|.. +++|.+.+..-
T Consensus 122 ~~~~~i~~~sv~hp~~P~~~g~V-Rv~~~~~~~~i~p~~~~~~~~~~~~~~~~ 173 (207)
T cd08911 122 NKLIVIVSKAVQHPSYPESPKKV-RVEDYWSYMVIRPHKSFDEPGFEFVLTYF 173 (207)
T ss_pred CCEEEEEEecCCCCCCCCCCCCE-EEEEeEEEEEEEeCCCCCCCCeEEEEEEE
Confidence 554221 11221 1011 466788888998873 45777765544
No 60
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=88.39 E-value=9.6 Score=29.15 Aligned_cols=117 Identities=14% Similarity=0.055 Sum_probs=67.0
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEec--CCCCCceeEEEEEEEeecCCCe
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFT--PGTPGFAGYKEKFIEIDNERRV 81 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~--~g~~~~~~~kErl~~iD~~~~~ 81 (155)
+..+.++++++++++..+. |. .++| +. +.++++++--+.-=.|-+..+. ....+-.++--|....+.++..
T Consensus 46 ~K~~~~v~a~~~~v~~~l~--d~---r~~Wd~~-~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~ 119 (197)
T cd08869 46 WRASTEVEAPPEEVLQRIL--RE---RHLWDDD-LLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGA 119 (197)
T ss_pred EEEEEEeCCCHHHHHHHHH--HH---Hhccchh-hheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCc
Confidence 5778899999999999886 64 3899 86 7788877653210011222211 1111223444444443444332
Q ss_pred --EEEEEEeC-CccC-c--CeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCc
Q 031668 82 --KVTDAVEG-GYLD-V--GFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEA 127 (155)
Q Consensus 82 --~~Y~v~eg-~~~~-~--~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~ 127 (155)
+..+=++- +... . ....+.+-+.++|.++++|.+++.+..++.+.-
T Consensus 120 ~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~i 171 (197)
T cd08869 120 CVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGRS 171 (197)
T ss_pred EEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCCC
Confidence 23332321 1110 0 123455667788988889999999999987653
No 61
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=87.35 E-value=12 Score=29.00 Aligned_cols=117 Identities=9% Similarity=0.003 Sum_probs=62.9
Q ss_pred EEEEEEe-cCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEec--CCCCCceeEEEEEEEeecCCC
Q 031668 5 VSHELEV-NVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFT--PGTPGFAGYKEKFIEIDNERR 80 (155)
Q Consensus 5 ~~~e~~i-~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~--~g~~~~~~~kErl~~iD~~~~ 80 (155)
+..+.++ ++|++.+++++. |.. ..++| |. +..+++++--+.--.+-...+. -...+-..+--|.. .+.++.
T Consensus 49 ~k~~~~~~~~s~e~~~~~l~--D~~-~r~~Wd~~-~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~-~~~~~~ 123 (222)
T cd08871 49 IKVSAIFPDVPAETLYDVLH--DPE-YRKTWDSN-MIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSW-LEFGGE 123 (222)
T ss_pred EEEEEEeCCCCHHHHHHHHH--Chh-hhhhhhhh-hceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEE-EeCCCE
Confidence 4456666 799999999997 864 46899 86 6677766553211223333322 11111123333333 222222
Q ss_pred -eEEEEEEeCCcc--Cc---CeeEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031668 81 -VKVTDAVEGGYL--DV---GFTLFRVIFEIIEKGSDSCIIRSIIEYELKEE 126 (155)
Q Consensus 81 -~~~Y~v~eg~~~--~~---~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~ 126 (155)
.+...-++-+.. .. ....+.+-+.++|.++++|.++|.+..++.+-
T Consensus 124 ~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~ 175 (222)
T cd08871 124 YIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS 175 (222)
T ss_pred EEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC
Confidence 221111121111 00 12235566678888778899999998888765
No 62
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=82.77 E-value=19 Score=27.47 Aligned_cols=138 Identities=9% Similarity=-0.055 Sum_probs=72.5
Q ss_pred eEEEEEEecCCHHHHhhhhhcCc--cccccccc-CCceeeEEEEcCCCCcceEEEEEec-CC-----CCCceeE-EEEEE
Q 031668 4 QVSHELEVNVPAAQAWELYGTIK--LAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFT-PG-----TPGFAGY-KEKFI 73 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW~~~~~~d--~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~-~g-----~~~~~~~-kErl~ 73 (155)
.+..+.+++++++++.+.+. | .. ..++| +. +.++++++.-+. ....+.+. +. ..+-.++ .+...
T Consensus 47 ~~k~~~~i~~~~~~v~~~l~--d~~~~-~r~~Wd~~-~~~~~~le~id~--~~~i~~~~~p~~~~~~vs~RDfV~~~~~~ 120 (206)
T cd08867 47 LYRAEGIVDALPEKVIDVII--PPCGG-LRLKWDKS-LKHYEVLEKISE--DLCVGRTITPSAAMGLISPRDFVDLVYVK 120 (206)
T ss_pred EEEEEEEEcCCHHHHHHHHH--hcCcc-cccccccc-ccceEEEEEeCC--CeEEEEEEccccccCccCCcceEEEEEEE
Confidence 36788899999999999997 6 43 35899 86 888888877431 12223321 11 0111121 11112
Q ss_pred EeecCCCeEEEEEEeCCccCcCeeE-EEEE-----EEEEeeC--CCceEEEEEEEEEEcCCcccCCcc---hhHHHHHHH
Q 031668 74 EIDNERRVKVTDAVEGGYLDVGFTL-FRVI-----FEIIEKG--SDSCIIRSIIEYELKEEAAANASF---VSTDAVAKI 142 (155)
Q Consensus 74 ~iD~~~~~~~Y~v~eg~~~~~~~~~-y~~t-----~~v~~~~--~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~ 142 (155)
.+++....+...-++-+.. .+.+. .++. +-++|.. +++|.++|.+..++.+.- |.-. .+...+...
T Consensus 121 ~~~~~~~~i~~~Sv~hp~~-p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~i--P~~lvn~~~~~~~~~~ 197 (206)
T cd08867 121 RYEDNQWSSSGKSVDIPER-PPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMI--PQSLVESAMPSNLVNF 197 (206)
T ss_pred EeCCCeEEEEEEeccCCCC-CCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCC--cHHHHHhhhhhhHHHH
Confidence 2333222233333322211 12222 2233 3345543 457999999999998653 3211 234445555
Q ss_pred HHHHHHHH
Q 031668 143 AEMAKNYL 150 (155)
Q Consensus 143 ~k~~e~~l 150 (155)
++.|.+||
T Consensus 198 ~~~lr~~~ 205 (206)
T cd08867 198 YTDLVKGV 205 (206)
T ss_pred HHHHHHhc
Confidence 66665554
No 63
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=80.84 E-value=21 Score=26.76 Aligned_cols=143 Identities=13% Similarity=-0.055 Sum_probs=78.9
Q ss_pred eEEEEEEecCCHHHHh-hhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCC---CCCceeEEEEEEEe-ec
Q 031668 4 QVSHELEVNVPAAQAW-ELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPG---TPGFAGYKEKFIEI-DN 77 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW-~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g---~~~~~~~kErl~~i-D~ 77 (155)
.+..+..+.++++++. .++. |... .++| +. +.++++++--..-..+.++....- ..+-.++--|-... ++
T Consensus 46 ~~k~~~~v~~~~~~~~~~~~~--d~~~-r~~Wd~~-~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~ 121 (206)
T smart00234 46 ASRAVGVVPMVCADLVEELMD--DLRY-RPEWDKN-VAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVD 121 (206)
T ss_pred EEEEEEEEecChHHHHHHHHh--cccc-hhhCchh-cccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCC
Confidence 3566778899999855 5665 7654 6999 75 778887755321124444443211 01112222222222 23
Q ss_pred CCCeEEEEEEeCCccC--c---CeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCcc---hhHHHHHHHHHHHHHH
Q 031668 78 ERRVKVTDAVEGGYLD--V---GFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEAAANASF---VSTDAVAKIAEMAKNY 149 (155)
Q Consensus 78 ~~~~~~Y~v~eg~~~~--~---~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~ 149 (155)
....+..+-++.+... . ....+.+-+.++|.+++.|.++|....++.+-- |.-. .+......+++.+-++
T Consensus 122 ~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~i--P~~lvn~~~~~~~~~~~~~~~~~ 199 (206)
T smart00234 122 GSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWL--PHWLVRSLIKSGLAEFAKTWVAT 199 (206)
T ss_pred CcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCc--cceeehhhhhhhHHHHHHHHHHH
Confidence 3333443333322110 0 124567778888988888999999999987653 3211 3455555666666666
Q ss_pred Hhh
Q 031668 150 LLN 152 (155)
Q Consensus 150 l~~ 152 (155)
|..
T Consensus 200 ~~~ 202 (206)
T smart00234 200 LQK 202 (206)
T ss_pred HHH
Confidence 653
No 64
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=77.51 E-value=32 Score=26.81 Aligned_cols=114 Identities=11% Similarity=0.004 Sum_probs=67.4
Q ss_pred eEEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEec-----CCCCCceeEEEEEEEeec
Q 031668 4 QVSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFT-----PGTPGFAGYKEKFIEIDN 77 (155)
Q Consensus 4 ~~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~-----~g~~~~~~~kErl~~iD~ 77 (155)
.+..+++++++++++...+- |. .+.| +. +.+.++++--+. ....+.+. +. .+-.++--|.-..|.
T Consensus 53 ~~r~~~~i~a~~~~vl~~ll--d~---~~~Wd~~-~~e~~vIe~ld~--~~~I~Yy~~~~PwP~-~~RD~V~~Rs~~~~~ 123 (204)
T cd08908 53 LWRTTIEVPAAPEEILKRLL--KE---QHLWDVD-LLDSKVIEILDS--QTEIYQYVQNSMAPH-PARDYVVLRTWRTNL 123 (204)
T ss_pred EEEEEEEeCCCHHHHHHHHH--hh---HHHHHHH-hhheEeeEecCC--CceEEEEEccCCCCC-CCcEEEEEEEEEEeC
Confidence 46788999999999999996 65 4789 86 566666655321 11222221 11 222344444444445
Q ss_pred CCCeEEEEEEeCCccCcC-----eeEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031668 78 ERRVKVTDAVEGGYLDVG-----FTLFRVIFEIIEKGSDSCIIRSIIEYELKEE 126 (155)
Q Consensus 78 ~~~~~~Y~v~eg~~~~~~-----~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~ 126 (155)
.+..+........+-..| ...+.+-..++|.++|+|.++..+..+|.+.
T Consensus 124 ~~g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~ 177 (204)
T cd08908 124 PKGACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGH 177 (204)
T ss_pred CCCeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCC
Confidence 555443333211111113 3334556677899888999999999998765
No 65
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=63.08 E-value=60 Score=24.14 Aligned_cols=142 Identities=11% Similarity=-0.029 Sum_probs=80.6
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCC-CCce---eEEEEEEEe-ecC
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGT-PGFA---GYKEKFIEI-DNE 78 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~-~~~~---~~kErl~~i-D~~ 78 (155)
+..+..++++++++...+. +-.. .| +. +.++++++--..-..+....+.... ++.. ++--|.... .+.
T Consensus 48 ~k~~~~v~~~~~~~~~~~~--~~~~---~Wd~~-~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~ 121 (206)
T PF01852_consen 48 FKAEGVVPASPEQVVEDLL--DDRE---QWDKM-CVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDG 121 (206)
T ss_dssp EEEEEEESSCHHHHHHHHH--CGGG---HHSTT-EEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTS
T ss_pred EEEEEEEcCChHHHHHHHH--hhHh---hcccc-hhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccc
Confidence 5677889999998888876 4322 88 86 7788888662111455555544321 1221 221122222 333
Q ss_pred CCeEEEEEEeCCccCc------CeeEEEEEEEEEeeCCCceEEEEEEEEEEcCCcccCCcc---hhHHHHHHHHHHHHHH
Q 031668 79 RRVKVTDAVEGGYLDV------GFTLFRVIFEIIEKGSDSCIIRSIIEYELKEEAAANASF---VSTDAVAKIAEMAKNY 149 (155)
Q Consensus 79 ~~~~~Y~v~eg~~~~~------~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~~~~~~~~---~~~~~~~~~~k~~e~~ 149 (155)
...+..+=++.+.... ....+.+-+.++|.+++.|.+++...-++.+.. |.-. .+...+..+++.+-+.
T Consensus 122 ~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~i--P~~~~n~~~~~~~~~~~~~~~~~ 199 (206)
T PF01852_consen 122 TYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWI--PSWLVNMVVKSQPPNFLKNLRKA 199 (206)
T ss_dssp EEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSS--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCC--hHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344443333332210 123466778889999888999999988887653 3211 2344555666667677
Q ss_pred HhhCC
Q 031668 150 LLNNK 154 (155)
Q Consensus 150 l~~~~ 154 (155)
|..+.
T Consensus 200 ~~~~~ 204 (206)
T PF01852_consen 200 LKKQK 204 (206)
T ss_dssp HHHCC
T ss_pred HHHhc
Confidence 76654
No 66
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=44.92 E-value=1.1e+02 Score=21.53 Aligned_cols=97 Identities=19% Similarity=0.160 Sum_probs=59.0
Q ss_pred EEEEecCCHHHHhhhhhcCcccccccccC----CceeeEEEEcCCCCcceEEEEEecCCCCCceeEEEEEEEeecCCCeE
Q 031668 7 HELEVNVPAAQAWELYGTIKLAKLVEKES----DTVEEIEIVEGDGGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVK 82 (155)
Q Consensus 7 ~e~~i~apa~kvW~~~~~~d~~~~~p~~P----~~v~s~~~~eGdg~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~ 82 (155)
.+.++++||+.+++.+- + +++..+. ..+..-+| + |.--.=.+..+ . .++=+|+++ ..++.|
T Consensus 3 I~~~l~v~a~~ff~~l~--~--s~~~DI~~~tgk~~~~~~L-~-----G~~Y~K~~~~~-~---~~~v~It~~-~~~~~Y 67 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLI--D--SLLYDIKQATGKKLPVKQL-K-----GFSYQKKFKNK-R---EAKVKITEY-EPNKRY 67 (120)
T ss_pred EEEEecCCHHHHHHHHH--H--HHHHHHHHHcCCCCChhhc-C-----CcEEEEEcCCC-C---EEEEEEEEE-cCCCEE
Confidence 45679999999999986 5 3444431 11111111 2 22222233333 2 556668878 778888
Q ss_pred EEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEEEc
Q 031668 83 VTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYELK 124 (155)
Q Consensus 83 ~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~ 124 (155)
.++.--. ...+..+.++.|.++|.|.|..+=++++.
T Consensus 68 ~~~~~s~------~~~~~i~Y~i~~~~~~~~~v~y~E~~~~~ 103 (120)
T PF11687_consen 68 AATFSSS------RGTFTISYEIEPLDDGSIEVTYEEEYESK 103 (120)
T ss_pred EEEEEec------CCCEEEEEEEEECCCCcEEEEEEEEEccC
Confidence 8887532 22477888888998887887777666543
No 67
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=38.12 E-value=1.6e+02 Score=21.62 Aligned_cols=44 Identities=11% Similarity=0.080 Sum_probs=29.8
Q ss_pred CCCeEEEEEEeCCccCcCeeEEEEEEEEEeeCCCceEEEEEEEEE
Q 031668 78 ERRVKVTDAVEGGYLDVGFTLFRVIFEIIEKGSDSCIIRSIIEYE 122 (155)
Q Consensus 78 ~~~~~~Y~v~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~y~ 122 (155)
....+.|.+.-+-.+. .+.++..++++.|.+.+.|.+.|..-+.
T Consensus 80 ~~~~~~~~iFPN~~i~-~~~~~~~~~~~~P~~~~~t~~~~~~~~~ 123 (190)
T cd08885 80 RRRLVLFAIFPTHLLA-LTPDYVWWLSLLPEGAGRVRVRWGVLVA 123 (190)
T ss_pred hcceEEEEECCcEEEE-ecCCeEEEEEEEecCCCeEEEEEEEEEc
Confidence 3456667776554443 3456677889999988888888875443
No 68
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=35.35 E-value=2e+02 Score=21.97 Aligned_cols=116 Identities=11% Similarity=-0.021 Sum_probs=61.4
Q ss_pred EEEEEEec-CCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEe--cCCCCCceeE-EEEEEEeecCC
Q 031668 5 VSHELEVN-VPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKF--TPGTPGFAGY-KEKFIEIDNER 79 (155)
Q Consensus 5 ~~~e~~i~-apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~--~~g~~~~~~~-kErl~~iD~~~ 79 (155)
+..+.++. ++++.+.+++. |... .++| +...+ +.-.+.++. .+-.+.+ +--..+=..+ .-+...+|..+
T Consensus 51 ~k~~~~~~~~s~~~~~~~l~--D~~~-r~~Wd~~~~~-~~~~~~~~~--~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~ 124 (207)
T cd08910 51 YKVFGVLEDCSPSLLADVYM--DLEY-RKQWDQYVKE-LYEKECDGE--TVIYWEVKYPFPLSNRDYVYIRQRRDLDVEG 124 (207)
T ss_pred EEEEEEEcCCCHHHHHHHHh--CHHH-HHHHHHHHHh-heeecCCCC--EEEEEEEEcCCCCCCceEEEEEEeccccCCC
Confidence 55677787 79999999998 8765 6899 87444 321222231 1222222 1000111122 11223355444
Q ss_pred CeEEE---EEEeCCccC-----cCeeEEEEEEEEEeeCCCceEEEEEEEEEEcCC
Q 031668 80 RVKVT---DAVEGGYLD-----VGFTLFRVIFEIIEKGSDSCIIRSIIEYELKEE 126 (155)
Q Consensus 80 ~~~~Y---~v~eg~~~~-----~~~~~y~~t~~v~~~~~g~s~v~W~~~y~~~~~ 126 (155)
..+.. ..++-+-.. -.+..|.+...++|.++++|.+.+...-+|.+.
T Consensus 125 ~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~ 179 (207)
T cd08910 125 RKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGM 179 (207)
T ss_pred CeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCCc
Confidence 32211 111111000 035678888889888777888888877776443
No 69
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=34.02 E-value=2.3e+02 Score=22.28 Aligned_cols=140 Identities=13% Similarity=0.014 Sum_probs=74.5
Q ss_pred EEEEEEec-CCHHHHhhhhhcCccccccccc-CCceeeEEEEcCCCCcceEEEEEecCCC----CCceeEEE-EEEEeec
Q 031668 5 VSHELEVN-VPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGDGGVGTILHLKFTPGT----PGFAGYKE-KFIEIDN 77 (155)
Q Consensus 5 ~~~e~~i~-apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGdg~~GsiR~~~~~~g~----~~~~~~kE-rl~~iD~ 77 (155)
+..+.++. ++++.+.+++. |... ..+| .. +.+.++++--+. ..+.+.+.-.. .+-..+-- ++...|+
T Consensus 54 ~Ka~~~v~~vt~~~~~~~l~--D~~~-r~~Wd~~-~~~~~vie~l~~--~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d 127 (235)
T cd08872 54 LKATHAVKGVTGHEVCHYFF--DPDV-RMDWETT-LENFHVVETLSQ--DTLIFHQTHKRVWPAAQRDALFVSHIRKIPA 127 (235)
T ss_pred EEEEEEECCCCHHHHHHHHh--Chhh-HHHHHhh-hheeEEEEecCC--CCEEEEEEccCCCCCCCcEEEEEEEEEecCc
Confidence 56677777 99999999998 8765 6899 85 788887755321 12222221110 00012221 2222332
Q ss_pred CC--------CeEEEEEEeCCccCcCe-eEEEEEEE-----------------EEeeCCCceEEEEEEEEEEcCCcccCC
Q 031668 78 ER--------RVKVTDAVEGGYLDVGF-TLFRVIFE-----------------IIEKGSDSCIIRSIIEYELKEEAAANA 131 (155)
Q Consensus 78 ~~--------~~~~Y~v~eg~~~~~~~-~~y~~t~~-----------------v~~~~~g~s~v~W~~~y~~~~~~~~~~ 131 (155)
.. -.+..++. -+... +- ...++... ++| ++++|.+++....+|.+..+..-
T Consensus 128 ~~~~~~~~~~vii~~Sv~-h~~~P-~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG~iP~wv 204 (235)
T cd08872 128 LEEPNAHDTWIVCNFSVD-HDSAP-LNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGGWAPASV 204 (235)
T ss_pred cccccCCCeEEEEEeccc-CccCC-CCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCCCccHHH
Confidence 21 22333332 22111 11 12333332 233 35679999998888866532211
Q ss_pred -cchhHHHHHHHHHHHHHHHhhC
Q 031668 132 -SFVSTDAVAKIAEMAKNYLLNN 153 (155)
Q Consensus 132 -~~~~~~~~~~~~k~~e~~l~~~ 153 (155)
-..++..+-++.+.+.+|++.+
T Consensus 205 vn~~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 205 LRAVYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred HHHHHHhhchHHHHHHHHHHHHh
Confidence 1135666678889999999864
No 70
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=32.11 E-value=1.1e+02 Score=24.87 Aligned_cols=38 Identities=3% Similarity=0.044 Sum_probs=26.6
Q ss_pred EEEEEEEEcCCcccCCcchhHHHHHHHHHHHHHHHhhCCC
Q 031668 116 RSIIEYELKEEAAANASFVSTDAVAKIAEMAKNYLLNNKA 155 (155)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~ 155 (155)
+|.+.+.+..+.+.. ....+.+..+.+.+|+++..+|+
T Consensus 248 ~~~i~~~~~~~~~~~--~~~~~~t~~~n~~lE~~Ir~~Pe 285 (305)
T TIGR02208 248 KFELTVRPAMATELS--VDPEQEARAMNKEVEQFILPYPE 285 (305)
T ss_pred eEEEEEecCCCCCCC--CCHHHHHHHHHHHHHHHHHcCch
Confidence 366777654332112 23678889999999999999985
No 71
>PRK05645 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=29.79 E-value=1.2e+02 Score=24.39 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=26.5
Q ss_pred EEEEEEEEcCCcccCCcchhHHHHHHHHHHHHHHHhhCCC
Q 031668 116 RSIIEYELKEEAAANASFVSTDAVAKIAEMAKNYLLNNKA 155 (155)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~ 155 (155)
.+++.|++...... +....+.+..+.+.+|+++..+|+
T Consensus 238 ~y~i~~~~~~~~~~--~~~~~~~t~~~~~~lE~~Ir~~Pe 275 (295)
T PRK05645 238 GYKVILEAAPEDMY--STDVEVSAAAMSKVVERYVRAYPS 275 (295)
T ss_pred eEEEEEecCCcCCC--CCCHHHHHHHHHHHHHHHHHcCcH
Confidence 46777765432211 123678889999999999999985
No 72
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=26.11 E-value=1.5e+02 Score=23.83 Aligned_cols=38 Identities=0% Similarity=0.008 Sum_probs=26.1
Q ss_pred EEEEEEEEcCCcccCCcchhHHHHHHHHHHHHHHHhhCCC
Q 031668 116 RSIIEYELKEEAAANASFVSTDAVAKIAEMAKNYLLNNKA 155 (155)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~ 155 (155)
.+.+.+.+....... ....+.+..+.+.+|+++..+|+
T Consensus 232 ~~~i~i~~~~~~~~~--~~~~~~t~~~~~~lE~~Ir~~P~ 269 (289)
T PRK08706 232 TVTLHFYPAWDSFPS--EDAQADAQRMNRFIEERVREHPE 269 (289)
T ss_pred cEEEEEecCCCCCCC--CCHHHHHHHHHHHHHHHHHcCcH
Confidence 366666553322112 23678899999999999999985
No 73
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=25.80 E-value=1.5e+02 Score=24.02 Aligned_cols=38 Identities=5% Similarity=0.010 Sum_probs=26.7
Q ss_pred EEEEEEEEcCCcccCCcchhHHHHHHHHHHHHHHHhhCCC
Q 031668 116 RSIIEYELKEEAAANASFVSTDAVAKIAEMAKNYLLNNKA 155 (155)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~ 155 (155)
+|.+.+++..... +...+.+.+..+.+.+|+++..+|+
T Consensus 248 ~y~i~i~~~~~~~--~~~~i~~~t~~~~~~lE~~Ir~~P~ 285 (306)
T PRK08733 248 RYVLKIAPPLADF--PSDDVIADTTRVNAAIEDMVREAPD 285 (306)
T ss_pred eEEEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 4667676543221 1223678899999999999999985
No 74
>PF08803 ydhR: Putative mono-oxygenase ydhR; InterPro: IPR014910 YdhR is a homodimeric protein that comprises of a central four-stranded beta sheet and four surrounding alpha helices []. It shows structural homology to the ActVA-Orf6 and YgiN proteins which indicates it could be a mono-oxygenase. ; PDB: 1WD6_B 2HIQ_B 2ASY_B.
Probab=25.76 E-value=1.7e+02 Score=20.18 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=36.5
Q ss_pred EEEEEecCC-HHHHhhhhhcCcccccccccCCceeeEEEEcCC-CCcceEEEEE
Q 031668 6 SHELEVNVP-AAQAWELYGTIKLAKLVEKESDTVEEIEIVEGD-GGVGTILHLK 57 (155)
Q Consensus 6 ~~e~~i~ap-a~kvW~~~~~~d~~~~~p~~P~~v~s~~~~eGd-g~~GsiR~~~ 57 (155)
....+.+.| .+.+++.+. +...-+.+.|+.+-++-...-+ +..|.|..+.
T Consensus 3 qvdF~~~gPfg~em~~~~~--~LA~sI~~ePGliwKiWten~~t~eaGGiYLFe 54 (97)
T PF08803_consen 3 QVDFPYNGPFGEEMSKAFN--DLAESINQEPGLIWKIWTENEETGEAGGIYLFE 54 (97)
T ss_dssp EEEEESSSS-HHHHHHHHH--HHHHHHTTSTTEEEEEEEEETTTTEEEEEEEES
T ss_pred EEEecCCCCcHHHHHHHHH--HHHHHHhhCCCeEEEEEEecCCCCccceEEEEC
Confidence 456677888 899999997 6544455559999999865333 6788887765
No 75
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=25.38 E-value=67 Score=25.15 Aligned_cols=38 Identities=11% Similarity=-0.088 Sum_probs=30.8
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcC
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEG 46 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eG 46 (155)
+..|..++..++.+|..+. +.. ...+| |. +++|+++|-
T Consensus 49 ~R~Egvv~~~~~ev~d~v~--~~~-~r~~Wd~~-v~~~~Iie~ 87 (202)
T cd08902 49 YKAQGVVEDVYNRIVDHIR--PGP-YRLDWDSL-MTSMDIIEE 87 (202)
T ss_pred EEEEEEecCCHHHHHHHHh--ccc-chhcccch-hhheeHhhh
Confidence 4567778899999999997 643 36799 86 999999976
No 76
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=24.27 E-value=2.9e+02 Score=20.22 Aligned_cols=39 Identities=8% Similarity=0.189 Sum_probs=29.5
Q ss_pred EEEEEEecCCHHHHhhhhhcCccccccccc-CCceeeEEEEcCC
Q 031668 5 VSHELEVNVPAAQAWELYGTIKLAKLVEKE-SDTVEEIEIVEGD 47 (155)
Q Consensus 5 ~~~e~~i~apa~kvW~~~~~~d~~~~~p~~-P~~v~s~~~~eGd 47 (155)
++.++..+-+.+.+-.+++ |..-++|++ |. +++++ ++++
T Consensus 3 ~~~~i~t~H~~e~v~~ILS--DP~F~lp~l~p~-ik~v~-~~~~ 42 (136)
T PF11485_consen 3 IEIEIKTSHDIEVVLTILS--DPEFVLPRLFPP-IKSVK-VEEN 42 (136)
T ss_dssp EEEEEE-SS-HHHHHHHHT---HHHHHHHHSTT-EEEEE--STT
T ss_pred EEEEeccCCChHheEEEec--CCccEecccCCc-eEEEE-ecCC
Confidence 5677888899999999999 877789999 85 89998 5554
No 77
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=22.88 E-value=2e+02 Score=23.33 Aligned_cols=38 Identities=8% Similarity=-0.030 Sum_probs=26.4
Q ss_pred EEEEEEEEcCCcccCCcchhHHHHHHHHHHHHHHHhhCCC
Q 031668 116 RSIIEYELKEEAAANASFVSTDAVAKIAEMAKNYLLNNKA 155 (155)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~ 155 (155)
.+.+.+++....... ....+.+..+.+.+|+++..+|+
T Consensus 251 ~~~i~~~~~~~~~~~--~d~~~~t~~~n~~lE~~Ir~~Pe 288 (309)
T PRK06860 251 GYELIILPPEDSPPL--DDAEATAAWMNKVVEKCILMAPE 288 (309)
T ss_pred eEEEEEecCCCCCCC--CCHHHHHHHHHHHHHHHHHcCch
Confidence 467777665432111 23567888889999999999985
No 78
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=21.93 E-value=2.1e+02 Score=23.11 Aligned_cols=38 Identities=5% Similarity=0.064 Sum_probs=26.1
Q ss_pred EEEEEEEEcCCcccCCcchhHHHHHHHHHHHHHHHhhCCC
Q 031668 116 RSIIEYELKEEAAANASFVSTDAVAKIAEMAKNYLLNNKA 155 (155)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~ 155 (155)
.+.+.+++..+.. ++ ....+.+..+.+.+|+++..+|+
T Consensus 245 ~~~i~~~~~~~~~-~~-~~~~~~t~~~~~~lE~~Ir~~P~ 282 (303)
T TIGR02207 245 GYRLKIDPPLDDF-PG-DDEIAAAARMNKIVEKMIMRAPE 282 (303)
T ss_pred eEEEEEeCCCCCC-CC-CCHHHHHHHHHHHHHHHHHcCcH
Confidence 3666676543321 11 23578888999999999999985
No 79
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=21.35 E-value=1.9e+02 Score=23.03 Aligned_cols=39 Identities=8% Similarity=0.073 Sum_probs=27.8
Q ss_pred EEEEEEEEEcCCcccCCcchhHHHHHHHHHHHHHHHhhCCC
Q 031668 115 IRSIIEYELKEEAAANASFVSTDAVAKIAEMAKNYLLNNKA 155 (155)
Q Consensus 115 v~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~ 155 (155)
..|.+.+++.-..+..+ ...+.+..+.+.+|+++.++|+
T Consensus 246 ~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~lE~~Ir~~P~ 284 (295)
T PF03279_consen 246 SHYRIEIEPPLDFPSSE--DIEELTQRYNDRLEEWIREHPE 284 (295)
T ss_pred CEEEEEEeecccCCccc--hHHHHHHHHHHHHHHHHHcChH
Confidence 46677777643322222 3678899999999999999984
No 80
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=20.81 E-value=2.3e+02 Score=20.58 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=25.5
Q ss_pred EEEEEEEEcCCcccCCcchhHHHHHHHHHHHHHHHhhCCC
Q 031668 116 RSIIEYELKEEAAANASFVSTDAVAKIAEMAKNYLLNNKA 155 (155)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~ 155 (155)
++++.|.+.-.. ++.....+.+..+.+.+|+.+..+|+
T Consensus 145 ~~~i~~~~~i~~--~~~~~~~~~~~~~~~~lE~~i~~~P~ 182 (192)
T cd07984 145 GYRIEFEPPLEN--PPSEDVEEDTQRLNDALEAAIREHPE 182 (192)
T ss_pred CEEEEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHhCch
Confidence 455556543221 11224678999999999999999985
No 81
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=20.67 E-value=5.9e+02 Score=23.87 Aligned_cols=66 Identities=15% Similarity=0.163 Sum_probs=35.2
Q ss_pred ecCCHHHHhhhhhcCccccccccc---CCceeeEEEEcCC-----CCcceEEEEEecCCCCCceeEEEEEEEeecCCCeE
Q 031668 11 VNVPAAQAWELYGTIKLAKLVEKE---SDTVEEIEIVEGD-----GGVGTILHLKFTPGTPGFAGYKEKFIEIDNERRVK 82 (155)
Q Consensus 11 i~apa~kvW~~~~~~d~~~~~p~~---P~~v~s~~~~eGd-----g~~GsiR~~~~~~g~~~~~~~kErl~~iD~~~~~~ 82 (155)
+.++|||.-++++ + ..++... -+.|...-++.+. +-=|.||+|.+.++ .+.|. .-..+..|
T Consensus 155 vTgsaDKtIklWk--~-~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge-----~l~~~---~ghtn~vY 223 (745)
T KOG0301|consen 155 VTGSADKTIKLWK--G-GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE-----VLLEM---HGHTNFVY 223 (745)
T ss_pred EeccCcceeeecc--C-CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCc-----eeeee---eccceEEE
Confidence 5667776655554 2 1222222 2335555544442 23378999998444 34443 45677777
Q ss_pred EEEEE
Q 031668 83 VTDAV 87 (155)
Q Consensus 83 ~Y~v~ 87 (155)
++++.
T Consensus 224 sis~~ 228 (745)
T KOG0301|consen 224 SISMA 228 (745)
T ss_pred EEEec
Confidence 77743
No 82
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=20.49 E-value=2.3e+02 Score=23.05 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=26.7
Q ss_pred EEEEEEEEcCCcccCCcchhHHHHHHHHHHHHHHHhhCCC
Q 031668 116 RSIIEYELKEEAAANASFVSTDAVAKIAEMAKNYLLNNKA 155 (155)
Q Consensus 116 ~W~~~y~~~~~~~~~~~~~~~~~~~~~~k~~e~~l~~~~~ 155 (155)
+|.+.+++..+.... ....+.+..+.+.+|+++..+|+
T Consensus 257 ~~~i~~~~~~~~~~~--~d~~~~t~~~~~~lE~~Ir~~Pe 294 (314)
T PRK08943 257 RLDIEIRPPMDDLLS--ADDETIARRMNEEVEQFVGPHPE 294 (314)
T ss_pred eEEEEEecCCCCCCC--CCHHHHHHHHHHHHHHHHHcCcH
Confidence 477777665432111 13568888999999999999985
Done!