Query 031669
Match_columns 155
No_of_seqs 193 out of 1196
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 03:45:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031669.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031669hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00018 AP2 DNA-binding domain 99.9 1.2E-22 2.6E-27 134.8 7.4 61 20-80 1-61 (61)
2 smart00380 AP2 DNA-binding dom 99.9 1.7E-21 3.7E-26 130.8 8.1 63 21-83 1-63 (64)
3 PHA00280 putative NHN endonucl 99.7 8.2E-17 1.8E-21 121.2 7.0 70 2-74 49-119 (121)
4 PF00847 AP2: AP2 domain; Int 99.2 1.5E-11 3.3E-16 79.5 5.6 52 20-71 1-56 (56)
5 PF14657 Integrase_AP2: AP2-li 84.7 3.6 7.8E-05 25.3 5.0 38 32-69 1-42 (46)
6 cd00801 INT_P4 Bacteriophage P 77.7 5.1 0.00011 32.8 5.1 38 31-68 10-49 (357)
7 PF13356 DUF4102: Domain of un 73.0 8.4 0.00018 26.6 4.5 40 26-65 28-71 (89)
8 PRK09692 integrase; Provisiona 67.2 17 0.00037 31.4 6.1 39 25-63 33-77 (413)
9 PF05036 SPOR: Sporulation rel 58.2 16 0.00034 23.4 3.3 25 41-65 41-65 (76)
10 PHA02601 int integrase; Provis 57.5 18 0.0004 29.9 4.4 43 24-67 2-45 (333)
11 PF10729 CedA: Cell division a 54.1 27 0.00058 24.3 4.0 38 20-60 31-68 (80)
12 PF08846 DUF1816: Domain of un 49.6 37 0.0008 23.2 4.1 40 32-71 9-48 (68)
13 PF08471 Ribonuc_red_2_N: Clas 47.5 21 0.00046 25.9 2.8 21 48-68 70-90 (93)
14 PF14112 DUF4284: Domain of un 40.7 16 0.00034 27.2 1.3 16 45-60 3-18 (122)
15 PRK10113 cell division modulat 36.2 31 0.00067 23.9 2.0 37 20-59 31-67 (80)
16 PRK10927 essential cell divisi 34.3 60 0.0013 28.5 4.0 35 33-67 273-307 (319)
17 COG2185 Sbm Methylmalonyl-CoA 29.9 39 0.00085 26.2 2.0 29 32-60 30-58 (143)
18 PF12167 DUF3596: Domain of un 25.9 2E+02 0.0043 18.9 5.2 57 23-80 2-63 (64)
19 PF07494 Reg_prop: Two compone 25.5 78 0.0017 16.6 2.1 11 42-52 14-24 (24)
20 cd01433 Ribosomal_L16_L10e Rib 24.4 1.5E+02 0.0033 21.3 4.2 35 32-68 71-105 (112)
21 COG3087 FtsN Cell division pro 23.1 1.2E+02 0.0025 26.0 3.8 32 33-64 216-249 (264)
22 PF00626 Gelsolin: Gelsolin re 23.0 1.2E+02 0.0027 19.3 3.2 34 35-68 20-53 (76)
23 PRK12757 cell division protein 22.4 1.3E+02 0.0029 25.5 4.0 33 33-65 210-242 (256)
24 COG0197 RplP Ribosomal protein 21.9 1.5E+02 0.0032 23.2 3.8 36 33-71 96-131 (146)
25 smart00262 GEL Gelsolin homolo 21.1 2.6E+02 0.0057 18.6 4.7 38 33-70 26-63 (90)
No 1
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.88 E-value=1.2e-22 Score=134.79 Aligned_cols=61 Identities=61% Similarity=1.112 Sum_probs=57.7
Q ss_pred CCeeeEEecCCCcEEEEEecCCCCeeEeccCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 031669 20 RPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDL 80 (155)
Q Consensus 20 S~yrGV~~r~~gkw~A~I~~~~~~~ri~LGtf~t~eeAA~AYd~Aa~~~~G~~a~lNFP~~ 80 (155)
|+|+||+++++|||+|+|+++..++++|||+|+|+|||+.|||.+++.++|.++.+|||++
T Consensus 1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 7899999988899999999976588999999999999999999999999999999999975
No 2
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.86 E-value=1.7e-21 Score=130.75 Aligned_cols=63 Identities=60% Similarity=1.141 Sum_probs=59.6
Q ss_pred CeeeEEecCCCcEEEEEecCCCCeeEeccCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCcccC
Q 031669 21 PYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLRG 83 (155)
Q Consensus 21 ~yrGV~~r~~gkw~A~I~~~~~~~ri~LGtf~t~eeAA~AYd~Aa~~~~G~~a~lNFP~~~~~ 83 (155)
+|+||+++++|||+|+|+++.+++++|||+|+|+||||.|||.+++.++|.++.+|||.+.+.
T Consensus 1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~ 63 (64)
T smart00380 1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD 63 (64)
T ss_pred CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence 599999988999999999988889999999999999999999999999999999999998764
No 3
>PHA00280 putative NHN endonuclease
Probab=99.68 E-value=8.2e-17 Score=121.25 Aligned_cols=70 Identities=19% Similarity=0.145 Sum_probs=63.1
Q ss_pred CCCchhhhhHhhccCCCCCCeeeEEecC-CCcEEEEEecCCCCeeEeccCCCCHHHHHHHHHHHHHhhcCCCCC
Q 031669 2 QGGPAVAETTAARKRSMDRPYKGIRMRK-WGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSAR 74 (155)
Q Consensus 2 ~~~~~~~~~~~~r~~~~~S~yrGV~~r~-~gkw~A~I~~~~~~~ri~LGtf~t~eeAA~AYd~Aa~~~~G~~a~ 74 (155)
.+++..+.+|++++++|+|||+||++.+ .|||+|+|.+ .+++++||.|+++|+|+.||+ ++.++||+||.
T Consensus 49 ~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~ 119 (121)
T PHA00280 49 LALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR 119 (121)
T ss_pred hcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence 3577789999999999999999999874 6999999999 888899999999999999997 77789999985
No 4
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.25 E-value=1.5e-11 Score=79.52 Aligned_cols=52 Identities=35% Similarity=0.469 Sum_probs=45.4
Q ss_pred CCeeeEEecC-CCcEEEEEecCCC---CeeEeccCCCCHHHHHHHHHHHHHhhcCC
Q 031669 20 RPYKGIRMRK-WGKWVAEIREPNK---RSRIWLGSYSTPVAAARAYDTAVFYLRGP 71 (155)
Q Consensus 20 S~yrGV~~r~-~gkw~A~I~~~~~---~~ri~LGtf~t~eeAA~AYd~Aa~~~~G~ 71 (155)
|+|+||++.+ .++|+|+|++... +++++||.|+++++|+++|+.++..++|+
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e 56 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE 56 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence 7899999875 6999999999421 48999999999999999999999999874
No 5
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=84.72 E-value=3.6 Score=25.31 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=29.8
Q ss_pred cEEEEEe--c--CCCCeeEeccCCCCHHHHHHHHHHHHHhhc
Q 031669 32 KWVAEIR--E--PNKRSRIWLGSYSTPVAAARAYDTAVFYLR 69 (155)
Q Consensus 32 kw~A~I~--~--~~~~~ri~LGtf~t~eeAA~AYd~Aa~~~~ 69 (155)
+|...|. . .+++++++-+.|.|..||..+...+...+.
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~ 42 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE 42 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence 5777773 3 345589999999999999999988776653
No 6
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=77.72 E-value=5.1 Score=32.83 Aligned_cols=38 Identities=34% Similarity=0.438 Sum_probs=29.4
Q ss_pred CcEEEEEecCCCCeeEeccCCC--CHHHHHHHHHHHHHhh
Q 031669 31 GKWVAEIREPNKRSRIWLGSYS--TPVAAARAYDTAVFYL 68 (155)
Q Consensus 31 gkw~A~I~~~~~~~ri~LGtf~--t~eeAA~AYd~Aa~~~ 68 (155)
+.|+.+++..++..++.||+|+ +.++|..........+
T Consensus 10 ~~~~~~~~~~g~~~~~~~g~~~~~~~~~A~~~~~~~~~~~ 49 (357)
T cd00801 10 KSWRFRYRLAGKRKRLTLGSYPAVSLAEAREKADEARALL 49 (357)
T ss_pred EEEEEEeccCCceeEEeCcCCCCCCHHHHHHHHHHHHHHH
Confidence 5699999998888899999995 6677776666554444
No 7
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=72.97 E-value=8.4 Score=26.58 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=26.7
Q ss_pred EecCCC--cEEEEEecCCCCeeEeccCCCC--HHHHHHHHHHHH
Q 031669 26 RMRKWG--KWVAEIREPNKRSRIWLGSYST--PVAAARAYDTAV 65 (155)
Q Consensus 26 ~~r~~g--kw~A~I~~~~~~~ri~LGtf~t--~eeAA~AYd~Aa 65 (155)
+..+.| .|.-+.+..++..++.||.|.+ ..+|........
T Consensus 28 ~v~~~G~kt~~~r~~~~gk~~~~~lG~~p~~sl~~AR~~a~~~~ 71 (89)
T PF13356_consen 28 RVTPSGSKTFYFRYRINGKRRRITLGRYPELSLAEAREKARELR 71 (89)
T ss_dssp EE-TTS-EEEEEEEEETTEEEEEEEEECTTS-HHHHHHHHHHHH
T ss_pred EEEeCCCeEEEEEEEecceEEEeccCCCccCCHHHHHHHHHHHH
Confidence 444554 5999999888888999999975 444444444333
No 8
>PRK09692 integrase; Provisional
Probab=67.18 E-value=17 Score=31.40 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=25.3
Q ss_pred EEecCCC--cEEEEEecC--CCCeeEeccCCC--CHHHHHHHHHH
Q 031669 25 IRMRKWG--KWVAEIREP--NKRSRIWLGSYS--TPVAAARAYDT 63 (155)
Q Consensus 25 V~~r~~g--kw~A~I~~~--~~~~ri~LGtf~--t~eeAA~AYd~ 63 (155)
|+.++.| .|+.+.+.+ ++.+++.||.|+ |..+|..+-..
T Consensus 33 l~v~~~G~k~~~~rY~~~~~gk~~~~~lG~yp~~sl~~AR~~a~~ 77 (413)
T PRK09692 33 LLIKSSGSKIWQFRYYRPLTKTRAKKSFGPYPSVTLADARNYRAE 77 (413)
T ss_pred EEEECCCcEEEEEEEecCCCCceeeeeCCCCCCCCHHHHHHHHHH
Confidence 4445555 499888754 444568999999 67666554433
No 9
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=58.19 E-value=16 Score=23.37 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=19.5
Q ss_pred CCCeeEeccCCCCHHHHHHHHHHHH
Q 031669 41 NKRSRIWLGSYSTPVAAARAYDTAV 65 (155)
Q Consensus 41 ~~~~ri~LGtf~t~eeAA~AYd~Aa 65 (155)
+..-+|.+|.|+|.++|..+-....
T Consensus 41 ~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 41 GPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp TTCEEEEECCECTCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHh
Confidence 3446889999999999988877655
No 10
>PHA02601 int integrase; Provisional
Probab=57.48 E-value=18 Score=29.90 Aligned_cols=43 Identities=26% Similarity=0.289 Sum_probs=28.1
Q ss_pred eEEecCCCcEEEEEecCC-CCeeEeccCCCCHHHHHHHHHHHHHh
Q 031669 24 GIRMRKWGKWVAEIREPN-KRSRIWLGSYSTPVAAARAYDTAVFY 67 (155)
Q Consensus 24 GV~~r~~gkw~A~I~~~~-~~~ri~LGtf~t~eeAA~AYd~Aa~~ 67 (155)
+|+..++|+|.++|+..+ .++++. .+|.|..||..........
T Consensus 2 ~~~~~~~g~w~~~~~~~~~~g~r~~-~~f~tk~eA~~~~~~~~~~ 45 (333)
T PHA02601 2 AVRKLKDGKWLCEIYPNGRDGKRIR-KRFATKGEALAFENYTMAE 45 (333)
T ss_pred ceEEcCCCCEEEEEEECCCCCchhh-hhhcCHHHHHHHHHHHHHh
Confidence 466667789999998631 234444 3699999887655554333
No 11
>PF10729 CedA: Cell division activator CedA; InterPro: IPR019666 CedA is made up of four antiparallel beta-strands and an alpha-helix. It activates cell division by inhibiting chromosome over-replication. This is mediated by binding to dsDNA via the beta-sheet [, ]. ; GO: 0003677 DNA binding, 0051301 cell division; PDB: 2BN8_A 2D35_A.
Probab=54.14 E-value=27 Score=24.28 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=24.3
Q ss_pred CCeeeEEecCCCcEEEEEecCCCCeeEeccCCCCHHHHHHH
Q 031669 20 RPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARA 60 (155)
Q Consensus 20 S~yrGV~~r~~gkw~A~I~~~~~~~ri~LGtf~t~eeAA~A 60 (155)
-+||-|.. -.|||+|.+.. +..-..--.|..+|.|-+=
T Consensus 31 dgfrdvw~-lrgkyvafvl~--ge~f~rsp~fs~pesaqrw 68 (80)
T PF10729_consen 31 DGFRDVWQ-LRGKYVAFVLM--GEHFRRSPAFSVPESAQRW 68 (80)
T ss_dssp TTECCECC-CCCEEEEEEES--SS-EEE---BSSHHHHHHH
T ss_pred ccccceee-eccceEEEEEe--cchhccCCCcCCcHHHHHH
Confidence 47888743 34999999998 4433445678888887653
No 12
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=49.62 E-value=37 Score=23.21 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=29.9
Q ss_pred cEEEEEecCCCCeeEeccCCCCHHHHHHHHHHHHHhhcCC
Q 031669 32 KWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGP 71 (155)
Q Consensus 32 kw~A~I~~~~~~~ri~LGtf~t~eeAA~AYd~Aa~~~~G~ 71 (155)
.|=++|.-..-.-..|.|-|.|.+||..+.-....-+-.+
T Consensus 9 aWWveI~T~~P~ctYyFGPF~s~~eA~~~~~gyieDL~~E 48 (68)
T PF08846_consen 9 AWWVEIETQNPNCTYYFGPFDSREEAEAALPGYIEDLESE 48 (68)
T ss_pred cEEEEEEcCCCCEEEEeCCcCCHHHHHHHhccHHHHHHhh
Confidence 3558888755556789999999999999876665555443
No 13
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=47.53 E-value=21 Score=25.91 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.4
Q ss_pred ccCCCCHHHHHHHHHHHHHhh
Q 031669 48 LGSYSTPVAAARAYDTAVFYL 68 (155)
Q Consensus 48 LGtf~t~eeAA~AYd~Aa~~~ 68 (155)
-|+|+|+++|..=||..+..|
T Consensus 70 ~GYF~t~eDA~~FydEl~~mL 90 (93)
T PF08471_consen 70 GGYFATEEDAEAFYDELTYML 90 (93)
T ss_pred CCCcCCHHHHHHHHHHHHHHH
Confidence 399999999999999987665
No 14
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=40.68 E-value=16 Score=27.23 Aligned_cols=16 Identities=19% Similarity=0.596 Sum_probs=12.5
Q ss_pred eEeccCCCCHHHHHHH
Q 031669 45 RIWLGSYSTPVAAARA 60 (155)
Q Consensus 45 ri~LGtf~t~eeAA~A 60 (155)
-||||+|.|.++-..=
T Consensus 3 siWiG~f~s~~el~~Y 18 (122)
T PF14112_consen 3 SIWIGNFKSEDELEEY 18 (122)
T ss_pred EEEEecCCCHHHHHHH
Confidence 5999999988875543
No 15
>PRK10113 cell division modulator; Provisional
Probab=36.17 E-value=31 Score=23.92 Aligned_cols=37 Identities=27% Similarity=0.385 Sum_probs=23.8
Q ss_pred CCeeeEEecCCCcEEEEEecCCCCeeEeccCCCCHHHHHH
Q 031669 20 RPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAAR 59 (155)
Q Consensus 20 S~yrGV~~r~~gkw~A~I~~~~~~~ri~LGtf~t~eeAA~ 59 (155)
-+|+-|..- .|||+|.+.. .-.--.--.|..+|.|-+
T Consensus 31 d~frDVW~L-rGKYVAFvl~--ge~FrRSPaFs~PEsAQR 67 (80)
T PRK10113 31 DSFRDVWML-RGKYVAFVLM--GESFLRSPAFSVPESAQR 67 (80)
T ss_pred cchhhhhee-ccceEEEEEe--chhhccCCccCCcHHHHH
Confidence 367777433 3999999987 222223467888877765
No 16
>PRK10927 essential cell division protein FtsN; Provisional
Probab=34.33 E-value=60 Score=28.47 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=27.0
Q ss_pred EEEEEecCCCCeeEeccCCCCHHHHHHHHHHHHHh
Q 031669 33 WVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFY 67 (155)
Q Consensus 33 w~A~I~~~~~~~ri~LGtf~t~eeAA~AYd~Aa~~ 67 (155)
|.|+|...+.-.||.||-|.+.++|-++.++..-.
T Consensus 273 ~~A~I~~~g~~~RVrVGPf~sr~eAe~a~~rLk~a 307 (319)
T PRK10927 273 FDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMA 307 (319)
T ss_pred CeeEEccCCcEEEEEeCCCCCHHHHHHHHHHHHHC
Confidence 66777654555799999999999999998775543
No 17
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=29.89 E-value=39 Score=26.25 Aligned_cols=29 Identities=34% Similarity=0.328 Sum_probs=20.4
Q ss_pred cEEEEEecCCCCeeEeccCCCCHHHHHHH
Q 031669 32 KWVAEIREPNKRSRIWLGSYSTPVAAARA 60 (155)
Q Consensus 32 kw~A~I~~~~~~~ri~LGtf~t~eeAA~A 60 (155)
|..+++.....=.=|++|.|.|++|++++
T Consensus 30 kvia~~l~d~GfeVi~~g~~~tp~e~v~a 58 (143)
T COG2185 30 KVIARALADAGFEVINLGLFQTPEEAVRA 58 (143)
T ss_pred HHHHHHHHhCCceEEecCCcCCHHHHHHH
Confidence 34444444333356999999999999987
No 18
>PF12167 DUF3596: Domain of unknown function (DUF3596); InterPro: IPR022000 This N-terminal domain is found in Bacteriophage P27p02, it is functionally uncharacterised, though it is considered to be an integrase. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome. This domain is found in related proteins in other bacteriophage, and prophage regions of bacterial genomes. The domain is approximately 90 amino acids in length and is found is associated with the C-terminal domain characterised by PF00589 from PFAM.
Probab=25.95 E-value=2e+02 Score=18.88 Aligned_cols=57 Identities=30% Similarity=0.320 Sum_probs=35.9
Q ss_pred eeEEecCCCcEEEEEecCCCCeeEeccCCCCHHHHHHHHHHHHHh----hcCCCC-CCCCCCc
Q 031669 23 KGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFY----LRGPSA-RLNFPDL 80 (155)
Q Consensus 23 rGV~~r~~gkw~A~I~~~~~~~ri~LGtf~t~eeAA~AYd~Aa~~----~~G~~a-~lNFP~~ 80 (155)
.||+.+ .|+-+-..+..+++-+..||.-+|+.-=..|=..+... ..|.|. .--||+|
T Consensus 2 ~gV~~r-~~~L~i~F~y~G~R~re~l~l~dT~~N~k~a~~~~~~I~~~I~~G~Fdy~~~FP~S 63 (64)
T PF12167_consen 2 AGVRVR-NGKLRIDFTYQGKRCRESLGLPDTPANRKKAERLRAEIEAEIALGTFDYAKYFPDS 63 (64)
T ss_pred CCEEEE-CCEEEEEEEECCEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcHHHhCcCC
Confidence 478877 57777777776677789999999987644443222211 256653 2346654
No 19
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=25.51 E-value=78 Score=16.64 Aligned_cols=11 Identities=27% Similarity=1.123 Sum_probs=7.8
Q ss_pred CCeeEeccCCC
Q 031669 42 KRSRIWLGSYS 52 (155)
Q Consensus 42 ~~~ri~LGtf~ 52 (155)
+..+||+||+.
T Consensus 14 ~~G~lWigT~~ 24 (24)
T PF07494_consen 14 SDGNLWIGTYN 24 (24)
T ss_dssp TTSCEEEEETS
T ss_pred CCcCEEEEeCC
Confidence 34469999873
No 20
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=24.42 E-value=1.5e+02 Score=21.34 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=26.2
Q ss_pred cEEEEEecCCCCeeEeccCCCCHHHHHHHHHHHHHhh
Q 031669 32 KWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYL 68 (155)
Q Consensus 32 kw~A~I~~~~~~~ri~LGtf~t~eeAA~AYd~Aa~~~ 68 (155)
.|+|.|.. +..-+-++.....+.|..|...++.+|
T Consensus 71 ~~~a~v~~--G~iifEi~~~~~~~~~~~alk~a~~Kl 105 (112)
T cd01433 71 GWVARVKP--GQILFEVRGVPEEEVAKEALRRAAKKL 105 (112)
T ss_pred EEEEEECC--CCEEEEEeCcCcHHHHHHHHHHhhccC
Confidence 49999998 555555666655888888888887766
No 21
>COG3087 FtsN Cell division protein [Cell division and chromosome partitioning]
Probab=23.06 E-value=1.2e+02 Score=26.01 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=23.7
Q ss_pred EEEEEe--cCCCCeeEeccCCCCHHHHHHHHHHH
Q 031669 33 WVAEIR--EPNKRSRIWLGSYSTPVAAARAYDTA 64 (155)
Q Consensus 33 w~A~I~--~~~~~~ri~LGtf~t~eeAA~AYd~A 64 (155)
.-|+|. -.+...|+-||.|.+.++|..|-++.
T Consensus 216 ~sskI~~~~~~~wyRV~vGP~n~~~~a~~aq~rL 249 (264)
T COG3087 216 ISSKITGVTNGGWYRVRVGPFNSKADAVKAQKRL 249 (264)
T ss_pred ccceeEeecCCceEEEEecCCCcHHHHHHHHHHH
Confidence 455666 43445689999999999999976653
No 22
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=23.02 E-value=1.2e+02 Score=19.26 Aligned_cols=34 Identities=26% Similarity=0.253 Sum_probs=28.3
Q ss_pred EEEecCCCCeeEeccCCCCHHHHHHHHHHHHHhh
Q 031669 35 AEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYL 68 (155)
Q Consensus 35 A~I~~~~~~~ri~LGtf~t~eeAA~AYd~Aa~~~ 68 (155)
+.|-+.+..-.+|+|.-.+..+-..|...|....
T Consensus 20 ~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~ 53 (76)
T PF00626_consen 20 CYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELL 53 (76)
T ss_dssp EEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhh
Confidence 5666666667899999999999999998888766
No 23
>PRK12757 cell division protein FtsN; Provisional
Probab=22.35 E-value=1.3e+02 Score=25.48 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=24.6
Q ss_pred EEEEEecCCCCeeEeccCCCCHHHHHHHHHHHH
Q 031669 33 WVAEIREPNKRSRIWLGSYSTPVAAARAYDTAV 65 (155)
Q Consensus 33 w~A~I~~~~~~~ri~LGtf~t~eeAA~AYd~Aa 65 (155)
+.++|...+.-.||+||-|.+.++|..+-++..
T Consensus 210 ~~a~I~~~gg~yRVrVGPf~sr~~A~~~~~rLk 242 (256)
T PRK12757 210 IESRITTGGGWNRVVLGPYNSKAAADKMLQRLK 242 (256)
T ss_pred CceEEeecCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 445666544456899999999999988877655
No 24
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=21.90 E-value=1.5e+02 Score=23.20 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=29.3
Q ss_pred EEEEEecCCCCeeEeccCCCCHHHHHHHHHHHHHhhcCC
Q 031669 33 WVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGP 71 (155)
Q Consensus 33 w~A~I~~~~~~~ri~LGtf~t~eeAA~AYd~Aa~~~~G~ 71 (155)
|+|.|.. ++-++-=...+++.|..|...|+.+|-+.
T Consensus 96 waArVkp---G~vlfei~g~~e~~A~EAlr~Aa~KLP~~ 131 (146)
T COG0197 96 WAARVKP---GRVLFEIAGVPEELAREALRRAAAKLPVK 131 (146)
T ss_pred EEEEecC---CcEEEEEecCcHHHHHHHHHHHhhcCCCc
Confidence 9999987 55567677788888999999999888554
No 25
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=21.12 E-value=2.6e+02 Score=18.57 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=30.1
Q ss_pred EEEEEecCCCCeeEeccCCCCHHHHHHHHHHHHHhhcC
Q 031669 33 WVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRG 70 (155)
Q Consensus 33 w~A~I~~~~~~~ri~LGtf~t~eeAA~AYd~Aa~~~~G 70 (155)
--+.|-+.+..-.+|+|...++++=..|-..|...+..
T Consensus 26 ~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~ 63 (90)
T smart00262 26 GDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDT 63 (90)
T ss_pred CCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 35777776677899999999999888888777776643
Done!