Query 031669
Match_columns 155
No_of_seqs 193 out of 1196
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 05:24:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031669.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031669hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 7.5E-27 2.6E-31 156.4 6.3 61 21-81 2-63 (63)
2 1u3e_M HNH homing endonuclease 94.6 0.0015 5E-08 49.9 -3.5 55 4-62 92-146 (174)
3 3igm_B PF14_0633 protein; AP2 92.7 0.072 2.5E-06 36.3 2.7 26 17-42 3-29 (77)
4 3jtz_A Integrase; four strande 88.6 0.93 3.2E-05 31.0 5.4 44 25-68 28-75 (88)
5 3ju0_A Phage integrase; four s 83.0 2.1 7.1E-05 30.3 5.0 44 25-68 28-75 (108)
6 1z1b_A Integrase; protein-DNA 75.9 3.8 0.00013 32.4 5.0 42 23-68 14-55 (356)
7 1x60_A Sporulation-specific N- 52.6 7.4 0.00025 24.9 2.0 25 42-66 44-68 (79)
8 1uta_A FTSN, MSGA, cell divisi 51.9 15 0.00051 23.7 3.5 33 34-66 36-68 (81)
9 1b69_A Protein (integrase); in 38.7 33 0.0011 22.6 3.5 29 19-47 9-38 (69)
10 2ftc_I Mitochondrial ribosomal 37.3 51 0.0017 23.5 4.6 36 33-70 80-115 (118)
11 1kcq_A Gelsolin, brevin, ADF, 32.5 68 0.0023 21.6 4.5 37 31-67 27-63 (104)
12 2bn8_A CEDA, cell division act 30.1 31 0.0011 23.3 2.2 38 20-60 38-75 (87)
13 1svq_A Severin; actin-binding; 28.9 66 0.0023 22.2 4.0 34 34-67 40-73 (114)
14 1ypx_A Putative vitamin-B12 in 28.5 41 0.0014 28.1 3.3 72 43-122 291-375 (375)
15 1l5x_A SurviVal protein E; str 22.8 73 0.0025 25.9 3.7 80 36-122 198-280 (280)
16 3r8s_M 50S ribosomal protein L 21.4 1.1E+02 0.0036 22.4 4.0 35 33-70 92-126 (136)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.93 E-value=7.5e-27 Score=156.44 Aligned_cols=61 Identities=52% Similarity=0.983 Sum_probs=57.6
Q ss_pred CeeeEEecCCCcEEEEEecCCC-CeeEeccCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 031669 21 PYKGIRMRKWGKWVAEIREPNK-RSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLL 81 (155)
Q Consensus 21 ~yrGV~~r~~gkw~A~I~~~~~-~~ri~LGtf~t~eeAA~AYd~Aa~~~~G~~a~lNFP~~~ 81 (155)
+||||++++||||+|+|+++.+ +++||||+|+|+||||+|||.|+++++|.++.||||+++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 7999999999999999999875 689999999999999999999999999999999999863
No 2
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=94.57 E-value=0.0015 Score=49.94 Aligned_cols=55 Identities=9% Similarity=0.029 Sum_probs=38.5
Q ss_pred CchhhhhHhhccCCCCCCeeeEEecCCCcEEEEEecCCCCeeEeccCCCCHHHHHHHHH
Q 031669 4 GPAVAETTAARKRSMDRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYD 62 (155)
Q Consensus 4 ~~~~~~~~~~r~~~~~S~yrGV~~r~~gkw~A~I~~~~~~~ri~LGtf~t~eeAA~AYd 62 (155)
+...+.+++.+...+. .++||.....++|.+.|... +.++||.|+|.+|||++|.
T Consensus 92 t~~eN~~~~~~~~~~~-~~~g~~~~~~~k~~~vi~~~---~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 92 TQKINVENQMSRGTLN-VSKAQQIAKIKNQKPIIVIS---PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp CHHHHHHHHHHHTCCC-CHHHHHHHHHHTCCCEEEEC---TTSCEEEESCHHHHHHHHT
T ss_pred CHHHHhhcccccCccc-ceeeeeeccCCCCceEEEEc---CCceEEeeCCHHHHHHHHC
Confidence 4556666666655442 25677543346788999884 4578999999999999964
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=92.73 E-value=0.072 Score=36.34 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=21.2
Q ss_pred CCCCCeeeEEecC-CCcEEEEEecCCC
Q 031669 17 SMDRPYKGIRMRK-WGKWVAEIREPNK 42 (155)
Q Consensus 17 ~~~S~yrGV~~r~-~gkw~A~I~~~~~ 42 (155)
..+|+|.||++.+ .+.|+|+-.+.++
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~ 29 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGAS 29 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTE
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCe
Confidence 4689999999886 5899999998543
No 4
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=88.60 E-value=0.93 Score=30.96 Aligned_cols=44 Identities=27% Similarity=0.395 Sum_probs=31.8
Q ss_pred EEecCCC--cEEEEEecCCCCeeEeccCCC--CHHHHHHHHHHHHHhh
Q 031669 25 IRMRKWG--KWVAEIREPNKRSRIWLGSYS--TPVAAARAYDTAVFYL 68 (155)
Q Consensus 25 V~~r~~g--kw~A~I~~~~~~~ri~LGtf~--t~eeAA~AYd~Aa~~~ 68 (155)
++..+.| .|+-+.+..++.+++.||.|. |..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 4455554 599999988788899999997 5677766666555544
No 5
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=82.95 E-value=2.1 Score=30.33 Aligned_cols=44 Identities=25% Similarity=0.304 Sum_probs=32.8
Q ss_pred EEecCCC--cEEEEEecCCCCeeEeccCCC--CHHHHHHHHHHHHHhh
Q 031669 25 IRMRKWG--KWVAEIREPNKRSRIWLGSYS--TPVAAARAYDTAVFYL 68 (155)
Q Consensus 25 V~~r~~g--kw~A~I~~~~~~~ri~LGtf~--t~eeAA~AYd~Aa~~~ 68 (155)
|+..+.| .|+-+.+..++.+++.||.|. |+.+|....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 4455554 499999988788899999997 6777777766665555
No 6
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=75.88 E-value=3.8 Score=32.39 Aligned_cols=42 Identities=17% Similarity=0.073 Sum_probs=30.2
Q ss_pred eeEEecCCCcEEEEEecCCCCeeEeccCCCCHHHHHHHHHHHHHhh
Q 031669 23 KGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYL 68 (155)
Q Consensus 23 rGV~~r~~gkw~A~I~~~~~~~ri~LGtf~t~eeAA~AYd~Aa~~~ 68 (155)
.||+.++.|.|..++.. .++++.+|. |..+|......+...+
T Consensus 14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 36877778899887665 556788996 8888877666544443
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=52.56 E-value=7.4 Score=24.91 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=19.8
Q ss_pred CCeeEeccCCCCHHHHHHHHHHHHH
Q 031669 42 KRSRIWLGSYSTPVAAARAYDTAVF 66 (155)
Q Consensus 42 ~~~ri~LGtf~t~eeAA~AYd~Aa~ 66 (155)
.--|+++|.|.+.++|..+-+....
T Consensus 44 ~~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 44 GLYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp TEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred cEEEEEECCcCCHHHHHHHHHHHHH
Confidence 3468999999999999888666544
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=51.90 E-value=15 Score=23.73 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=23.7
Q ss_pred EEEEecCCCCeeEeccCCCCHHHHHHHHHHHHH
Q 031669 34 VAEIREPNKRSRIWLGSYSTPVAAARAYDTAVF 66 (155)
Q Consensus 34 ~A~I~~~~~~~ri~LGtf~t~eeAA~AYd~Aa~ 66 (155)
.+.|...+.--||.+|.|.+.++|..+-+....
T Consensus 36 ~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 36 DSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp CEEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred CeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 344444344568999999999999888666544
No 9
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=38.71 E-value=33 Score=22.58 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=21.6
Q ss_pred CCCeeeEEecCCCcEEEEEecC-CCCeeEe
Q 031669 19 DRPYKGIRMRKWGKWVAEIREP-NKRSRIW 47 (155)
Q Consensus 19 ~S~yrGV~~r~~gkw~A~I~~~-~~~~ri~ 47 (155)
.--+.|+++++.|+|+..+.+. ++.+.||
T Consensus 9 r~L~~GesqR~dG~Y~yry~d~~Gkr~~vY 38 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYIDSFGEPQFVY 38 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCeEEccCCcEEEEEEcCCCCEEEEE
Confidence 3467899999999999999986 3334444
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=37.34 E-value=51 Score=23.50 Aligned_cols=36 Identities=14% Similarity=0.106 Sum_probs=29.6
Q ss_pred EEEEEecCCCCeeEeccCCCCHHHHHHHHHHHHHhhcC
Q 031669 33 WVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRG 70 (155)
Q Consensus 33 w~A~I~~~~~~~ri~LGtf~t~eeAA~AYd~Aa~~~~G 70 (155)
|+|.|.. +..-+-++...+.+.|..|...|+.+|-+
T Consensus 80 wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 80 YVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 9999997 56556677668899999999999988743
No 11
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=32.53 E-value=68 Score=21.59 Aligned_cols=37 Identities=16% Similarity=0.075 Sum_probs=30.7
Q ss_pred CcEEEEEecCCCCeeEeccCCCCHHHHHHHHHHHHHh
Q 031669 31 GKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFY 67 (155)
Q Consensus 31 gkw~A~I~~~~~~~ri~LGtf~t~eeAA~AYd~Aa~~ 67 (155)
..--+.|.+.+..-.+|.|...+..|...|-..|...
T Consensus 27 ns~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~i 63 (104)
T 1kcq_A 27 NNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGI 63 (104)
T ss_dssp CTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3445788887777899999999999999998888654
No 12
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=30.08 E-value=31 Score=23.29 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=25.5
Q ss_pred CCeeeEEecCCCcEEEEEecCCCCeeEeccCCCCHHHHHHH
Q 031669 20 RPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARA 60 (155)
Q Consensus 20 S~yrGV~~r~~gkw~A~I~~~~~~~ri~LGtf~t~eeAA~A 60 (155)
-+||-|..-+ |||+|.+... ..--.--.|..+|.|-+=
T Consensus 38 d~frdvw~lr-gkyvafvl~g--e~frrspafsvpesaqrw 75 (87)
T 2bn8_A 38 DSFRDVWMLR-GKYVAFVLMG--ESFLRSPAFTVPESAQRW 75 (87)
T ss_dssp TTCTTEEEET-TEEEEBCCSS--SCCCBCCCBSSHHHHHHH
T ss_pred ccchhheeec-cceEEEEEec--hhhccCCccCCcHHHHHH
Confidence 4788885544 8999998873 322234678888877653
No 13
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=28.94 E-value=66 Score=22.16 Aligned_cols=34 Identities=18% Similarity=0.093 Sum_probs=28.7
Q ss_pred EEEEecCCCCeeEeccCCCCHHHHHHHHHHHHHh
Q 031669 34 VAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFY 67 (155)
Q Consensus 34 ~A~I~~~~~~~ri~LGtf~t~eeAA~AYd~Aa~~ 67 (155)
-+.|.+.+..-.+|.|...+..|-+.|-..|...
T Consensus 40 D~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a~~i 73 (114)
T 1svq_A 40 DCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAI 73 (114)
T ss_dssp SEEEEEETTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred CeEEEecCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 4677777777899999999999999998887664
No 14
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes}
Probab=28.50 E-value=41 Score=28.08 Aligned_cols=72 Identities=18% Similarity=0.053 Sum_probs=36.5
Q ss_pred CeeEeccCCC-------CHHHHHHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCC------CCCHHHHHHHHHHhcchhh
Q 031669 43 RSRIWLGSYS-------TPVAAARAYDTAVFYLRGPSARLNFPDLLRGEGAVGGA------DMSAAFIRKKATEVGARVD 109 (155)
Q Consensus 43 ~~ri~LGtf~-------t~eeAA~AYd~Aa~~~~G~~a~lNFP~~~~~~~~~~~~------~~s~~~ir~~a~~~~~~v~ 109 (155)
++.|.||.++ ++|+-+.....|+..+ |. +.....+..+.+ .++++...++-......+.
T Consensus 291 ~~~v~lGvvd~~~~~~e~~e~v~~ri~~a~~~v-~~-------e~l~lsPdCGl~s~~~g~~~t~~~a~~kL~~~v~~A~ 362 (375)
T 1ypx_A 291 DLKIVLGLITSKTGELEDEAAIKARIEEASEIV-PL-------SQLRLSPQCGFASTEEGNILTEEEQWDKLRYVVRLAN 362 (375)
T ss_dssp TCEEEEEEECSSSCC-CCSHHHHHHHHHHHHHS-CG-------GGEEEEESSCCC--------CHHHHHHHHHHHHHHHH
T ss_pred CCeEEEeeecCcCCCCCCHHHHHHHHHHHHHhc-Cc-------cceEecCCCCccccccCCCCCHHHHHHHHHHHHHHHH
Confidence 5678998875 4667666666666665 21 212222223333 5677766666666666666
Q ss_pred hhhhhhhcCCCCC
Q 031669 110 AIESALHNTPDQE 122 (155)
Q Consensus 110 a~~~~~~~~~~~~ 122 (155)
.+...++||||+|
T Consensus 363 ~~~~~~~~~~~~~ 375 (375)
T 1ypx_A 363 DIWGELEHHHHHH 375 (375)
T ss_dssp HHSCC--------
T ss_pred HHHhchhhcccCC
Confidence 6666777766654
No 15
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=22.79 E-value=73 Score=25.94 Aligned_cols=80 Identities=15% Similarity=0.171 Sum_probs=42.0
Q ss_pred EEecCCCCeeEeccCCCCHHHHHHHHHH-HHHhhcCCCC--CCCCCCcccCCCCCCCCCCCHHHHHHHHHHhcchhhhhh
Q 031669 36 EIREPNKRSRIWLGSYSTPVAAARAYDT-AVFYLRGPSA--RLNFPDLLRGEGAVGGADMSAAFIRKKATEVGARVDAIE 112 (155)
Q Consensus 36 ~I~~~~~~~ri~LGtf~t~eeAA~AYd~-Aa~~~~G~~a--~lNFP~~~~~~~~~~~~~~s~~~ir~~a~~~~~~v~a~~ 112 (155)
+-..|..+...|+|.... ++ ..-=|. .++ ..|.-+ .|.+....+ .....++...+......+.+.+..++
T Consensus 198 ~~~dprg~~~yw~~g~~~-~~-~~~tD~~~av-~~G~iSVTPl~~d~T~~----~~l~~l~~~~~~~~~~~~~~~~~~~~ 270 (280)
T 1l5x_A 198 ERVDPRGVRYYWLYGRDL-AP-EPETDVYVVL-KEGGIAITPLTLNLNAV----DAHREVDMDSLNRMVEYINASLSKLA 270 (280)
T ss_dssp EEECTTSCEEEECSCSBC-CC-CTTBHHHHHH-TSCCEEEEEECCCCBSS----CCBCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCeEEEeCCCcC-CC-CCCChHHHHH-hCCeEEEEeEeccCCCh----HHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 345566778899985332 11 112243 232 233322 222222111 11345777777777777788888888
Q ss_pred hhhhcCCCCC
Q 031669 113 SALHNTPDQE 122 (155)
Q Consensus 113 ~~~~~~~~~~ 122 (155)
..++||||+|
T Consensus 271 ~~~~~~~~~~ 280 (280)
T 1l5x_A 271 AALEHHHHHH 280 (280)
T ss_dssp HHHTTC----
T ss_pred HHHhhhccCC
Confidence 8888888764
No 16
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=21.44 E-value=1.1e+02 Score=22.43 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=28.4
Q ss_pred EEEEEecCCCCeeEeccCCCCHHHHHHHHHHHHHhhcC
Q 031669 33 WVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRG 70 (155)
Q Consensus 33 w~A~I~~~~~~~ri~LGtf~t~eeAA~AYd~Aa~~~~G 70 (155)
|+|.|.. +..-+-++. .+.+.|..|...|+.+|-+
T Consensus 92 wva~Vk~--G~ilfEi~g-~~~~~A~eAlr~a~~KLP~ 126 (136)
T 3r8s_M 92 WVALIQP--GKVLYEMDG-VPEELAREAFKLAAAKLPI 126 (136)
T ss_dssp EEEEECT--TCEEEEEES-SCHHHHHHHHHHHHTTCSS
T ss_pred EEEEECC--CCEEEEEeC-CCHHHHHHHHHHHHhcCCC
Confidence 9999998 665566666 4899999999999888743
Done!