BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031670
(155 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 64 NSLPVVTVETLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQ 118
+S+P++ E G+LINVY + GL+ + + DL L V +A + SD F+
Sbjct: 43 SSVPIID----ENGYLINVYEAYDVLGLIKGGI--YNDLSLSVGEALMRRSDDFE 91
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 64 NSLPVVTVETLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQ 118
+S+P++ E G+LINVY + GL+ + + DL L V +A + SD F+
Sbjct: 222 SSVPIID----ENGYLINVYEAYDVLGLIKGGI--YNDLSLSVGEALMRRSDDFE 270
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 64 NSLPVVTVETLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQ 118
+S+P++ E G+LINVY + GL+ + + DL L V +A + SD F+
Sbjct: 215 SSVPIID----ENGYLINVYEAYDVLGLIKGGI--YNDLSLSVGEALMRRSDDFE 263
>pdb|1VCA|A Chain A, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
pdb|1VCA|B Chain B, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
Length = 202
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 74 LEKGFLINVY-LEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHI 127
LEKG + +Y K+ L LEA + + ++ A V DR +++ + GDH+
Sbjct: 80 LEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHL 134
>pdb|1VSC|A Chain A, Vcam-1
pdb|1VSC|B Chain B, Vcam-1
Length = 196
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 74 LEKGFLINVY-LEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHI 127
LEKG + +Y K+ L LEA + + ++ A V DR +++ + GDH+
Sbjct: 80 LEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHL 134
>pdb|1IJ9|A Chain A, Highly Hydrated Human Vcam-1 Fragment
Length = 196
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 74 LEKGFLINVY-LEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHI 127
LEKG + +Y K+ L LEA + + ++ A V DR +++ + GDH+
Sbjct: 80 LEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHL 134
>pdb|3ZXW|A Chain A, Structure Of Activated Rubisco From Thermosynechococcus
Elongatus Complexed With
2-Carboxyarabinitol-1,5-Diphosphate
pdb|3ZXW|C Chain C, Structure Of Activated Rubisco From Thermosynechococcus
Elongatus Complexed With
2-Carboxyarabinitol-1,5-Diphosphate
pdb|3ZXW|E Chain E, Structure Of Activated Rubisco From Thermosynechococcus
Elongatus Complexed With
2-Carboxyarabinitol-1,5-Diphosphate
pdb|3ZXW|G Chain G, Structure Of Activated Rubisco From Thermosynechococcus
Elongatus Complexed With
2-Carboxyarabinitol-1,5-Diphosphate
Length = 475
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 63 ENSLPVVTVETLEKGFLINVYLEKNC--SGLLVSVLEAFEDLGLEVLDARVSCSDRFQ-- 118
E +P++ + L GF N L K C +G+L+ + A V+D + + F+
Sbjct: 259 ELEMPIIMHDFLTAGFTANTTLSKWCRDNGMLLHIHRAMH----AVMDRQKNHGIHFRVL 314
Query: 119 ---LEAVGGDHI 127
L GGDHI
Sbjct: 315 AKCLRMSGGDHI 326
>pdb|3IOY|A Chain A, Structure Of Putative Short-Chain Dehydrogenase
(Saro_0793) From Novosphingobium Aromaticivorans
pdb|3IOY|B Chain B, Structure Of Putative Short-Chain Dehydrogenase
(Saro_0793) From Novosphingobium Aromaticivorans
Length = 319
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 88 CSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQAI 147
C GL+ S + A +D+ + L V D+ +E + G H G++ V+ V++A+
Sbjct: 194 CPGLVKSYIYASDDIRPDALKGEVKPVDKTAVERLAGV----HEFGMEPDVIGARVIEAM 249
Query: 148 K 148
K
Sbjct: 250 K 250
>pdb|2YBV|A Chain A, Structure Of Rubisco From Thermosynechococcus Elongatus
pdb|2YBV|C Chain C, Structure Of Rubisco From Thermosynechococcus Elongatus
pdb|2YBV|E Chain E, Structure Of Rubisco From Thermosynechococcus Elongatus
pdb|2YBV|G Chain G, Structure Of Rubisco From Thermosynechococcus Elongatus
pdb|2YBV|I Chain I, Structure Of Rubisco From Thermosynechococcus Elongatus
pdb|2YBV|K Chain K, Structure Of Rubisco From Thermosynechococcus Elongatus
pdb|2YBV|M Chain M, Structure Of Rubisco From Thermosynechococcus Elongatus
pdb|2YBV|O Chain O, Structure Of Rubisco From Thermosynechococcus Elongatus
Length = 475
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 63 ENSLPVVTVETLEKGFLINVYLEKNC--SGLLVSVLEAFEDLGLEVLDARVSCSDRFQ-- 118
E +P++ + L GF N L K C +G+L+ + A V+D + + F+
Sbjct: 259 ELEMPIIMHDFLTAGFTANTTLSKWCRDNGMLLHIHRAMH----AVMDRQKNHGIHFRVL 314
Query: 119 ---LEAVGGDHI 127
L GGDHI
Sbjct: 315 AKCLRMSGGDHI 326
>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
pdb|2NYE|B Chain B, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 65 SLPVVTVETLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQ 118
S+P++ E G+LINVY + GL+ + + DL L V +A SD F+
Sbjct: 44 SVPIID----ENGYLINVYEAYDVLGLIKGGI--YNDLSLSVGEALXRRSDDFE 91
>pdb|4I99|C Chain C, Crystal Structure Of The Smchead Bound To The C-winged
Helix Domain Of Scpa
pdb|4I99|D Chain D, Crystal Structure Of The Smchead Bound To The C-winged
Helix Domain Of Scpa
Length = 87
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 34 VDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLE 85
VD KY+EEL + V+ + ++ GT + +P V + + + FL ++LE
Sbjct: 17 VDIEKYVEELYKVVKKIYEKTGTP--IKFWDLVPDVEPKIIARTFLYLLFLE 66
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 20/125 (16%)
Query: 33 VVDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETL---------------EKG 77
VVDA + E++KQ++ IGT + +E ++ E L EK
Sbjct: 72 VVDALR--EKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIEEIRKAEKP 129
Query: 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQ 137
++I +++ N SG ++ + L ++ SD F+ A+ + +E HA I +
Sbjct: 130 YVI-MFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAI--EQLEEHAKRIGVK 186
Query: 138 VVKEA 142
V+K +
Sbjct: 187 VIKHS 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.127 0.328
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,756,721
Number of Sequences: 62578
Number of extensions: 134755
Number of successful extensions: 431
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 25
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)