BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031670
(155 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LPW3|SCRM2_ARATH Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1
SV=1
Length = 450
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 37/176 (21%)
Query: 1 MSSREQNKAALYEKLMLLRDVTNSTS-MNKTSIVVDASKYIEELKQQVETLNQEIGTSEA 59
M+ R + K L ++L +LR V S M++ SI+ DA Y++EL Q++ L+ E+ ++
Sbjct: 270 MAERRRRKK-LNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHTELESTPP 328
Query: 60 ST----------------------VENSLPVVTVE------TLEKGFLINVYLEKNC--- 88
S+ +SLP + L +G +N+++ C
Sbjct: 329 SSSSLHPLTPTPQTLSYRVKEELCPSSSLPSPKGQQPRVEVRLREGKAVNIHMF--CGRR 386
Query: 89 SGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVL 144
GLL+S + A ++LGL+V A +SC + F L+ + + D + Q+ +AVL
Sbjct: 387 PGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCQEDHDVLPEQI--KAVL 440
>sp|Q9LXA9|BH061_ARATH Transcription factor bHLH61 OS=Arabidopsis thaliana GN=BHLH61 PE=2
SV=1
Length = 315
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 22/127 (17%)
Query: 11 LYEKLMLLRDVTNS-TSMNKTSIVVDASKYIEELKQQVETLN---QEIGT-SEASTVENS 65
L ++L LLR + T M++TSI+ DA Y++EL ++ L QE+G+ S ST+
Sbjct: 163 LNDRLSLLRSIVPKITKMDRTSILGDAIDYMKELLDKINKLQEDEQELGSNSHLSTL--- 219
Query: 66 LPVVTVETLEKGFL--------INVYLEKNCS---GLLVSVLEAFEDLGLEVLDARVSCS 114
+T E++ + L +N +++ C GL+VS + E LGLE+ +SC
Sbjct: 220 ---ITNESMVRNSLKFEVDQREVNTHIDICCPTKPGLVVSTVSTLETLGLEIEQCVISCF 276
Query: 115 DRFQLEA 121
F L+A
Sbjct: 277 SDFSLQA 283
>sp|Q9LSL1|BH093_ARATH Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1
SV=1
Length = 351
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 24/156 (15%)
Query: 11 LYEKLMLLRDVTNSTS-MNKTSIVVDASKYIEELKQQVETLN---QEIGTSEAST----- 61
L ++L +LR + S M++TSI+ DA Y++EL ++ L QE+G S S
Sbjct: 190 LNDRLSMLRSIVPKISKMDRTSILGDAIDYMKELLDKINKLQDEEQELGNSNNSHHSKLF 249
Query: 62 ------------VENSLPVVTVETLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDA 109
V NS P ++ ++ +++ GLL+S + E LGLE+
Sbjct: 250 GDLKDLNANEPLVRNS-PKFEIDRRDEDTRVDICCSPK-PGLLLSTVNTLETLGLEIEQC 307
Query: 110 RVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQ 145
+SC F L+A + E D I ++ +K+A+ +
Sbjct: 308 VISCFSDFSLQASCSEGAE-QRDFITSEDIKQALFR 342
>sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1
Length = 494
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 39/156 (25%)
Query: 1 MSSREQNKAALYEKLMLLRDVTNSTS-MNKTSIVVDASKYIEELKQQVETLNQEIGTSEA 59
M+ R + K L ++L +LR V S M++ SI+ DA Y++EL Q++ L+ E+ ++
Sbjct: 310 MAERRRRKK-LNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPP 368
Query: 60 STVE--------------------------NSLPV-----VTVET-LEKGFLINVYLEKN 87
++ +SLP VE L +G +N+++
Sbjct: 369 GSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPKGQQARVEVRLREGRAVNIHM--F 426
Query: 88 CS---GLLVSVLEAFEDLGLEVLDARVSCSDRFQLE 120
C GLL++ ++A ++LGL+V A +SC + F L+
Sbjct: 427 CGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALD 462
>sp|Q0V7X4|FIT_ARATH Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION
FACTOR OS=Arabidopsis thaliana GN=FIT PE=1 SV=1
Length = 318
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 3 SREQNKAALYEKLMLLRD-VTNSTSMNKTSIVVDASKYIEELKQQVETLNQEIGTSEAS 60
S + + + +KL LR V N T M+K SIV DA Y++EL+ Q + L +I EAS
Sbjct: 135 SERRRRGRMKDKLYALRSLVPNITKMDKASIVGDAVLYVQELQSQAKKLKSDIAGLEAS 193
>sp|Q9FT81|TT8_ARATH Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2
Length = 518
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 21/153 (13%)
Query: 6 QNKAALYEKLMLLRD-VTNSTSMNKTSIVVDASKYIEELKQQV---ETLNQEIGTSEAST 61
+ + L EK + LR V T M+K SI+ D Y+ L+++V E + E T
Sbjct: 370 RRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHELENTHHEQQHKRTRT 429
Query: 62 VENSLPVVTVETLEKGFLIN-VYLEKNC---SGLLVSVLEAFEDLGLEVLDARVSCSDR- 116
+ T E +E + N V LE C GLL+ +L+ +LG+E S +D
Sbjct: 430 CKRK----TSEEVEVSIIENDVLLEMRCEYRDGLLLDILQVLHELGIETTAVHTSVNDHD 485
Query: 117 FQLEAVGGDHIEGHADGIDAQV--VKEAVLQAI 147
F+ E I G A + VK A+ Q I
Sbjct: 486 FEAE------IRAKVRGKKASIAEVKRAIHQVI 512
>sp|O81900|DYT1_ARATH Transcription factor DYSFUNCTIONAL TAPETUM 1 OS=Arabidopsis
thaliana GN=DYT1 PE=2 SV=1
Length = 207
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 29/143 (20%)
Query: 1 MSSREQNKAALYEKLMLLRD-VTNSTSMNKTSIVVDASKYIEELKQQVETLNQEIGTSEA 59
+ + + + L+ +LM LR V T+M K SIV DA YI EL+ V+ L + E
Sbjct: 34 LEAERRRREKLHCRLMALRSHVPIVTNMTKASIVEDAITYIGELQNNVKNLLETFHEMEE 93
Query: 60 STV----ENSLPVVT--VETL---------------------EKGFLINVYLEKNCSGLL 92
+ E + P++ VET E+ F + + EK G+
Sbjct: 94 APPEIDEEQTDPMIKPEVETSDLNEEMKKLGIEENVQLCKIGERKFWLKIITEKR-DGIF 152
Query: 93 VSVLEAFEDLGLEVLDARVSCSD 115
+E LG E++D ++ S+
Sbjct: 153 TKFMEVMRFLGFEIIDISLTTSN 175
>sp|Q9ZPY8|AIB_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis
thaliana GN=AIB PE=2 SV=2
Length = 566
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 65/117 (55%), Gaps = 8/117 (6%)
Query: 6 QNKAALYEKLMLLRDV-TNSTSMNKTSIVVDASKYIEELKQQVETLNQE-IGTSEASTVE 63
Q + L ++ LR V N + M+K S++ DA YI+EL+++V+ + E +GT ++ +
Sbjct: 402 QRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVKIMEDERVGTDKSLSES 461
Query: 64 NSL-----PVVTVETLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115
N++ P V ++ + + ++ V + S +++A + + +++A++S ++
Sbjct: 462 NTITVEESPEVDIQAMNEEVVVRV-ISPLDSHPASRIIQAMRNSNVSLMEAKLSLAE 517
>sp|Q0WNR2|BH090_ARATH Transcription factor bHLH90 OS=Arabidopsis thaliana GN=BHLH90 PE=2
SV=1
Length = 441
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 37/173 (21%)
Query: 4 REQNKAALYEKLMLLRDVTNS-TSMNKTSIVVDASKYIEEL---KQQVET----LN---- 51
RE+ A+Y LR V T +NK I DA YI EL KQ++E +N
Sbjct: 273 RERINQAMYG----LRAVVPKITKLNKIGIFSDAVDYINELLVEKQKLEDELKGINEMEC 328
Query: 52 QEIGTSEASTV-----------------ENSLPVVTVETLEKGFLINVYLEKNCSGLLVS 94
+EI E S + +N + + ET E+ FLI V E G
Sbjct: 329 KEIAAEEQSAIADPEAERVSSKSNKRVKKNEVKIEVHETGERDFLIRVVQEHKQDG-FKR 387
Query: 95 VLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQAI 147
++EA + LE++D + R L + +++ + DGI ++++ +L+ +
Sbjct: 388 LIEAVDLCELEIIDVNFT---RLDLTVMTVLNVKANKDGIACGILRDLLLKMM 437
>sp|Q2HIV9|BH035_ARATH Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2
SV=1
Length = 248
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 3 SREQNKAALYEKLMLLRDV-TNSTSMNKTSIVVDASKYIEELKQQVETLNQEIGTSEAST 61
S + L ++L LR V N T M+K SI+ DA YIE L+ + + L EI E ST
Sbjct: 59 SERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIRELE-ST 117
Query: 62 VENSLPVVTVETLEKGFLINVY------LEKNCSGLLVSVLE---AFEDLGLEVLDARVS 112
++SL + ++ L+ V L+ S L+ VLE F +G + V+
Sbjct: 118 PKSSLSF--SKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTF--MGERTMVVSVT 173
Query: 113 CSDR 116
C+ R
Sbjct: 174 CNKR 177
>sp|O30175|KTHY_ARCFU Probable thymidylate kinase OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=tmk PE=3 SV=1
Length = 196
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 4 REQNKAALYEKLMLLRDVTNS--TSMNKTSIVVDASKYIEELKQQV 47
R++ K + +EKL LR V + ++T++VVDASK +EE+K++V
Sbjct: 136 RKRGKLSPFEKLDYLRKVRKCFLENADETTVVVDASKPLEEVKEEV 181
>sp|Q8S3F1|BH020_ARATH Transcription factor NAI1 OS=Arabidopsis thaliana GN=NAI1 PE=2 SV=1
Length = 320
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 58 EASTVENSLPVVTVETLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDA 109
E S + ++P++ ++ LI V+ EKN G ++ +L + E LEV+++
Sbjct: 231 EVSIFKQTMPMIEARVSDRDLLIRVHCEKN-KGCMIKILSSLEKFRLEVVNS 281
>sp|P48685|RBL_BAZTR Ribulose bisphosphate carboxylase large chain OS=Bazzania trilobata
GN=rbcL PE=3 SV=1
Length = 475
Score = 33.1 bits (74), Expect = 0.71, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 45/107 (42%), Gaps = 24/107 (22%)
Query: 43 LKQQVET-------LNQEIGTSE------ASTVENSLPVVTVETLEKGFLINVYLEKNC- 88
K Q ET LN GTSE A E +P+V + L GF N L +C
Sbjct: 226 FKSQAETGEIKGHYLNATAGTSEEMMKRAACARELGVPIVMHDYLTGGFTANTSLAHHCR 285
Query: 89 -SGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEA-----VGGDHIEG 129
+GLL+ + A V+D + + F++ A GGDHI
Sbjct: 286 DNGLLLHIHRAMH----AVIDRQKNHGMHFRVSAKALRLSGGDHIHA 328
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2
SV=1
Length = 589
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 28/133 (21%)
Query: 6 QNKAALYEKLMLLRDV-TNSTSMNKTSIVVDASKYI--------------EELKQQVETL 50
Q + L ++ LR V N + M+K S++ DA YI EEL++Q++ +
Sbjct: 423 QRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKSKLQKAESDKEELQKQIDVM 482
Query: 51 NQEIGTSEAS-------TVENSLPV---VTVETLEKGFLINVYLEK-NCSGLLVSVLEAF 99
N+E G +++S E+S+ + V V+ + +I + K N G +EA
Sbjct: 483 NKEAGNAKSSVKDRKCLNQESSVLIEMEVDVKIIGWDAMIRIQCSKRNHPG--AKFMEAL 540
Query: 100 EDLGLEVLDARVS 112
++L LEV A +S
Sbjct: 541 KELDLEVNHASLS 553
>sp|O23090|BH014_ARATH Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2
SV=1
Length = 423
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 5 EQNKAALYEKLMLLRDVTNSTS-MNKTSIVVDASKYIEELKQQVETLNQEI 54
+Q + L + LR + S M+K S++ DA YIE LK +++ L EI
Sbjct: 255 KQRREKLNHRFYALRAIVPKVSRMDKASLLSDAVSYIESLKSKIDDLETEI 305
>sp|A5DAR2|DBP7_PICGU ATP-dependent RNA helicase DBP7 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DBP7 PE=3 SV=3
Length = 747
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 87 NCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVK 140
+CS + EAF+ G E AR + ++RF++ VG D E +A+G D ++ K
Sbjct: 428 SCSDSVNFHYEAFKRNGSEFRKARNAETNRFEMVTVGED--EANAEGSDTEIPK 479
>sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1
Length = 592
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 6 QNKAALYEKLMLLRDV-TNSTSMNKTSIVVDASKYIEELK---QQVETLNQEI 54
Q + L ++ LR V N + M+K S++ DA YI ELK QQ E+ +EI
Sbjct: 422 QRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKSKLQQAESDKEEI 474
>sp|Q9LXD8|HEC3_ARATH Transcription factor HEC3 OS=Arabidopsis thaliana GN=HEC3 PE=1 SV=1
Length = 224
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 17 LLRDVTNSTSMNKTSIVVDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTV 71
L R V T M+ S++ +A +Y++ LK+Q+ LN G + + + VT
Sbjct: 148 LQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNNTGYTPPPPQDQASQAVTT 202
>sp|Q7VAZ5|PNP_PROMA Polyribonucleotide nucleotidyltransferase OS=Prochlorococcus
marinus (strain SARG / CCMP1375 / SS120) GN=pnp PE=3
SV=1
Length = 722
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 40 IEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLEKNCSGLLVSVLEAF 99
IE + E +N+ I E+ ++ L + E + + YLEKNC+ + ++L+ F
Sbjct: 200 IEAIDFGYEAVNELIKAQESILKDSGLTQIKPEKPDLDETVPSYLEKNCTKPISALLKEF 259
Query: 100 ----EDLGLEVLDARVSCSDR 116
ED L++ + + +C+++
Sbjct: 260 DLSKEDRDLKLDEIKTNCAEK 280
>sp|Q06J26|RBL_BIGNA Ribulose bisphosphate carboxylase large chain OS=Bigelowiella
natans GN=rbcL PE=3 SV=1
Length = 475
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 43/104 (41%), Gaps = 24/104 (23%)
Query: 44 KQQVET-------LNQEIGTSEA------STVENSLPVVTVETLEKGFLINVYLEKNC-- 88
K Q ET LN GTSE E +P+V + L GF N L K C
Sbjct: 227 KSQSETGEVKGHYLNATAGTSEEVLKRAECAKELGVPIVMHDFLTGGFTTNTSLSKYCRE 286
Query: 89 SGLLVSVLEAFEDLGLEVLDARVSCSDRFQ-----LEAVGGDHI 127
SGLL+ + A V+D + + F+ L GGDH+
Sbjct: 287 SGLLLHIHRAMH----AVVDRQKNHGIHFRVLAKTLRLSGGDHL 326
>sp|Q9LUK7|BH028_ARATH Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2
SV=1
Length = 511
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 21 VTNSTSMNKTSIVVDASKYIEELKQQVETLNQE 53
V N + M+KTS++ DA YI ELK + E + E
Sbjct: 366 VPNVSKMDKTSLLEDAVCYINELKSKAENVELE 398
>sp|Q9LNJ5|BH013_ARATH Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2
SV=1
Length = 590
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 22/122 (18%)
Query: 5 EQNKAALYEKLMLLRDV-TNSTSMNKTSIVVDASKYIEELKQQVETL-----------NQ 52
Q + L ++ LR V N + M+K S++ DA YI EL +++ + N
Sbjct: 439 RQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVMEAERERLGYSSNP 498
Query: 53 EIGTSEASTVENSLPVVTVETLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVS 112
I V+ S VTV IN LE + + + AFE+ +EV+++ +
Sbjct: 499 PISLDSDINVQTSGEDVTVR-------INCPLESHPAS---RIFHAFEESKVEVINSNLE 548
Query: 113 CS 114
S
Sbjct: 549 VS 550
>sp|Q39204|RAP1_ARATH Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2
Length = 623
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 6 QNKAALYEKLMLLRDV-TNSTSMNKTSIVVDASKYIEELKQQV 47
Q + L ++ LR V N + M+K S++ DA YI ELK +V
Sbjct: 459 QRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSKV 501
>sp|Q52RG7|SGPL_ORYSJ Sphingosine-1-phosphate lyase OS=Oryza sativa subsp. japonica
GN=SPL PE=2 SV=2
Length = 539
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 18 LRDVTNSTSMNKTSIVVDASKYIEELKQQVETLNQEIGTSEASTVENSLPVV-----TVE 72
LR V + +M ++ S YI K++V Q GTS ST+ LP V +
Sbjct: 53 LRTVLLALAMTAIKLLPGVSAYINAEKRKVVDQLQSGGTSTKSTLRTELPTVGLSNQVIN 112
Query: 73 TLEKGFLINVYLEKNCSG 90
LE +V + CSG
Sbjct: 113 DLETLKARDVNWQGKCSG 130
>sp|B1ZJ88|FTHS_METPB Formate--tetrahydrofolate ligase OS=Methylobacterium populi (strain
ATCC BAA-705 / NCIMB 13946 / BJ001) GN=fhs PE=3 SV=1
Length = 557
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 71 VETLEKGFLINVYLEKNCSG----LLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDH 126
++ LEKGF KN G ++V V F+D E + C DR Q+EA+ H
Sbjct: 350 LDALEKGFANLERHVKNVRGFGLPVVVGVNHFFQDTDAEHAKLKELCRDRLQVEAITCKH 409
Query: 127 -IEGHADGIDAQVVKEAVLQAIKNVQDSEQ 155
EG A E + QA+ + + EQ
Sbjct: 410 WAEGGAGA-------EELAQAVVKLAEGEQ 432
>sp|Q83WS0|FTHS_METEA Formate--tetrahydrofolate ligase OS=Methylobacterium extorquens
(strain ATCC 14718 / DSM 1338 / AM1) GN=fhs PE=1 SV=3
Length = 557
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 63 ENSLPVVTVETLEKGFLINVYLEKNCSGL-------LVSVLEAFEDLGLEVLDARVSCSD 115
+ L ++ LEKGF LE++ + + +V V F+D E + C D
Sbjct: 342 KKDLQAENLDALEKGF---ANLERHVNNVRSFGLPVVVGVNHFFQDTDAEHARLKELCRD 398
Query: 116 RFQLEAVGGDH-IEGHADGIDAQVVKEAVLQAIKNVQDSEQ 155
R Q+EA+ H EG A EA+ QA+ + + EQ
Sbjct: 399 RLQVEAITCKHWAEGGAGA-------EALAQAVVKLAEGEQ 432
>sp|A9VZT0|FTHS_METEP Formate--tetrahydrofolate ligase OS=Methylobacterium extorquens
(strain PA1) GN=fhs PE=3 SV=1
Length = 557
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 63 ENSLPVVTVETLEKGFLINVYLEKNCSGL-------LVSVLEAFEDLGLEVLDARVSCSD 115
+ L ++ LEKGF LE++ + + +V V F+D E + C D
Sbjct: 342 KKDLQAENLDALEKGF---ANLERHVNNVRSFGLPVVVGVNHFFQDTDAEHARLKELCRD 398
Query: 116 RFQLEAVGGDH-IEGHADGIDAQVVKEAVLQAIKNVQDSEQ 155
R Q+EA+ H EG A EA+ QA+ + + EQ
Sbjct: 399 RLQVEAITCKHWAEGGAGA-------EALAQAVVKLAEGEQ 432
>sp|B7L0A5|FTHS_METC4 Formate--tetrahydrofolate ligase OS=Methylobacterium
chloromethanicum (strain CM4 / NCIMB 13688) GN=fhs PE=3
SV=1
Length = 557
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 63 ENSLPVVTVETLEKGFLINVYLEKNCSGL-------LVSVLEAFEDLGLEVLDARVSCSD 115
+ L ++ LEKGF LE++ + + +V V F+D E + C D
Sbjct: 342 KKDLQAENLDALEKGF---ANLERHVNNVRSFGLPVVVGVNHFFQDTDAEHARLKELCRD 398
Query: 116 RFQLEAVGGDH-IEGHADGIDAQVVKEAVLQAIKNVQDSEQ 155
R Q+EA+ H EG A EA+ QA+ + + EQ
Sbjct: 399 RLQVEAITCKHWAEGGAGA-------EALAQAVVKLAEGEQ 432
>sp|A3KNA7|SRBP2_DANRE Sterol regulatory element-binding protein 2 OS=Danio rerio
GN=srebf2 PE=2 SV=1
Length = 1099
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 8 KAALYEKLMLLRDVT--NSTSMNKTSIVVDASKYIEELKQQVETLNQEIGTSEASTVENS 65
++++ +K++ LRD+ N M+K+ ++ A YI+ L+Q L QE T + + +N
Sbjct: 333 RSSINDKILELRDLVLGNDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENLTLKMANQKNK 392
Query: 66 LPVVTVETLE 75
V+ LE
Sbjct: 393 SACVSDVDLE 402
>sp|A9VJ02|ADDA_BACWK ATP-dependent helicase/nuclease subunit A OS=Bacillus
weihenstephanensis (strain KBAB4) GN=addA PE=3 SV=1
Length = 1241
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 2 SSREQNKAALYEKLMLLRDVTNSTSMNKTSIVVDASKYIEELKQQVETLNQEIGTSEAST 61
S N +KL+ DV T + +V AS +E++K Q+ET + I +
Sbjct: 192 SRAHPNPEKWLDKLVEAYDVEGKTIED----LVYASYLLEDVKFQLETAEKHIRKATELA 247
Query: 62 VENSLPVVTVETLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115
+ P VETL+ + L G SV EA +++ + L R+ SD
Sbjct: 248 MLPDGPAPRVETLQADLALLGTLSSAARGSWTSVYEAMQNVSWQTL-KRIKKSD 300
>sp|Q59996|RPSC_SYNY3 Probable RNA polymerase sigma-C factor OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=sigC PE=3 SV=1
Length = 404
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 38 KYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLE----KGFLINVYLEKNCSGLLV 93
++ + L Q V TL Q + + + E L +TVE LE +G ++ K L+V
Sbjct: 121 RWAKILGQTVATLKQTLKSGKKRWAE--LAGLTVEELENIEKQGITAKAHMIKANLRLVV 178
Query: 94 SVLEAFEDLGLEVLD 108
SV + +++ GLE+LD
Sbjct: 179 SVAKKYQNRGLELLD 193
>sp|A7MGS0|GLND_CROS8 [Protein-PII] uridylyltransferase OS=Cronobacter sakazakii (strain
ATCC BAA-894) GN=glnD PE=3 SV=1
Length = 892
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 61 TVENSLPVVTVETLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVS 112
TVE + + T K FL + L++ GLL V + F DLG+ + AR+S
Sbjct: 801 TVETEVNFLPTHTDRKSFLELIALDQ--PGLLARVGQVFADLGISLHGARIS 850
>sp|Q9FFN9|ARI13_ARATH Probable E3 ubiquitin-protein ligase ARI13 OS=Arabidopsis thaliana
GN=ARI13 PE=2 SV=1
Length = 536
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 35 DASKYIEELKQQVETLNQEIGTSEASTVENSLPV---VTVETLEKGFLINVYLEKNCSGL 91
DA+ +E + TLN+EIG + ++T EN V VT+ET G +++ GL
Sbjct: 429 DATSLVESFSK---TLNEEIGRASSATYENFCCVKHKVTIETSNIGNYFYHFIKTLQEGL 485
Query: 92 LVSVLEAFEDLG 103
+++++D G
Sbjct: 486 DDVKVKSYDDYG 497
>sp|Q2GHX4|ATPD_EHRCR ATP synthase subunit delta OS=Ehrlichia chaffeensis (strain
Arkansas) GN=atpH PE=3 SV=1
Length = 185
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 91 LLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIE 128
+VSVLE D+ L + + RVS D+ +L V GD+I+
Sbjct: 33 FVVSVLENCNDISLFLSNPRVSREDKVKLVEVIGDYID 70
>sp|P08968|RPC1_TRYBB DNA-directed RNA polymerase III subunit RPC1 OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 1530
Score = 29.3 bits (64), Expect = 9.6, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 43 LKQQVETLNQEIGTSEAST--VENSLPVVTVETLEKGFLINVYLEKNCSGLLV----SVL 96
L ++ + E GT+ T + N+ P++ V++ KG +N+ C G +L
Sbjct: 753 LNTELSKVRDECGTAAVQTLSIHNNTPLIMVQSGSKGSALNIAQMMACVGQQTVSGKRIL 812
Query: 97 EAFEDLGL 104
+AF+D L
Sbjct: 813 DAFQDRSL 820
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.328
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,178,007
Number of Sequences: 539616
Number of extensions: 1769452
Number of successful extensions: 6679
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 6655
Number of HSP's gapped (non-prelim): 93
length of query: 155
length of database: 191,569,459
effective HSP length: 107
effective length of query: 48
effective length of database: 133,830,547
effective search space: 6423866256
effective search space used: 6423866256
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)