Query 031670
Match_columns 155
No_of_seqs 114 out of 774
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:46:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00353 HLH helix loop heli 99.4 2E-13 4.4E-18 85.3 4.5 47 2-48 2-52 (53)
2 cd00083 HLH Helix-loop-helix d 99.3 1.5E-12 3.4E-17 82.9 4.3 46 2-47 10-59 (60)
3 PF00010 HLH: Helix-loop-helix 99.2 7.2E-12 1.6E-16 79.2 3.9 43 2-44 7-55 (55)
4 cd04895 ACT_ACR_1 ACT domain-c 98.6 5.1E-07 1.1E-11 60.4 9.3 67 78-147 2-68 (72)
5 cd04897 ACT_ACR_3 ACT domain-c 98.6 5.2E-07 1.1E-11 60.9 9.4 68 79-149 3-74 (75)
6 cd04927 ACT_ACR-like_2 Second 98.5 1.3E-06 2.9E-11 58.5 9.7 68 78-148 1-72 (76)
7 cd04900 ACT_UUR-like_1 ACT dom 98.5 2E-06 4.3E-11 56.9 10.3 69 78-149 2-71 (73)
8 cd04896 ACT_ACR-like_3 ACT dom 98.5 2.4E-06 5.1E-11 57.6 9.3 65 79-147 2-72 (75)
9 cd04925 ACT_ACR_2 ACT domain-c 98.2 2.1E-05 4.5E-10 52.3 9.9 48 79-127 2-49 (74)
10 cd04928 ACT_TyrKc Uncharacteri 98.2 2.5E-05 5.4E-10 51.7 9.5 65 78-147 2-67 (68)
11 KOG1318 Helix loop helix trans 98.2 2.8E-06 6E-11 73.3 5.7 48 3-50 240-292 (411)
12 KOG1319 bHLHZip transcription 98.1 2.6E-06 5.5E-11 66.5 3.4 55 3-57 69-131 (229)
13 cd04926 ACT_ACR_4 C-terminal 98.0 9.8E-05 2.1E-09 48.7 9.0 67 78-148 2-68 (72)
14 KOG4304 Transcriptional repres 98.0 3.5E-06 7.7E-11 68.7 2.4 48 2-49 38-94 (250)
15 cd04899 ACT_ACR-UUR-like_2 C-t 97.9 0.00024 5.2E-09 45.7 9.6 66 79-148 2-67 (70)
16 KOG3561 Aryl-hydrocarbon recep 97.7 3.3E-05 7.2E-10 71.6 3.8 44 3-46 27-75 (803)
17 KOG3960 Myogenic helix-loop-he 97.7 7E-05 1.5E-09 60.8 5.2 54 2-55 124-180 (284)
18 PF01842 ACT: ACT domain; Int 97.7 0.0011 2.3E-08 41.7 9.5 61 78-146 1-64 (66)
19 PRK00275 glnD PII uridylyl-tra 97.6 0.0006 1.3E-08 64.5 11.6 82 66-150 801-888 (895)
20 PRK05007 PII uridylyl-transfer 97.6 0.00041 8.9E-09 65.5 10.3 80 67-149 796-880 (884)
21 PRK04374 PII uridylyl-transfer 97.6 0.00091 2E-08 63.1 11.8 78 67-147 784-866 (869)
22 PRK03381 PII uridylyl-transfer 97.5 0.0016 3.4E-08 60.8 11.7 81 66-149 587-668 (774)
23 KOG0561 bHLH transcription fac 97.4 9E-05 1.9E-09 61.7 2.6 48 3-50 67-117 (373)
24 PRK01759 glnD PII uridylyl-tra 97.4 0.0011 2.5E-08 62.3 10.1 78 67-147 771-853 (854)
25 PRK03381 PII uridylyl-transfer 97.4 0.0017 3.7E-08 60.6 10.9 75 68-147 696-772 (774)
26 PF13740 ACT_6: ACT domain; PD 97.3 0.0034 7.3E-08 41.7 9.0 66 77-149 2-68 (76)
27 PRK01759 glnD PII uridylyl-tra 97.3 0.0036 7.9E-08 59.0 12.2 80 66-148 664-749 (854)
28 PRK05092 PII uridylyl-transfer 97.3 0.0029 6.2E-08 60.1 11.6 80 66-148 830-915 (931)
29 cd04873 ACT_UUR-ACR-like ACT d 97.3 0.0061 1.3E-07 38.6 9.5 47 79-126 2-48 (70)
30 PRK05007 PII uridylyl-transfer 97.3 0.0045 9.7E-08 58.6 12.3 81 66-149 688-774 (884)
31 TIGR01693 UTase_glnD [Protein- 97.2 0.005 1.1E-07 57.9 11.7 81 66-149 655-742 (850)
32 PRK03059 PII uridylyl-transfer 97.1 0.0035 7.6E-08 59.1 10.3 58 67-125 774-833 (856)
33 KOG2483 Upstream transcription 97.0 0.00085 1.8E-08 54.2 4.3 49 4-52 67-119 (232)
34 cd04893 ACT_GcvR_1 ACT domains 97.0 0.012 2.6E-07 39.2 8.9 65 78-149 2-67 (77)
35 PRK03059 PII uridylyl-transfer 97.0 0.0076 1.7E-07 56.9 10.5 79 66-148 665-750 (856)
36 TIGR01693 UTase_glnD [Protein- 96.9 0.0095 2.1E-07 56.1 10.5 78 67-147 767-849 (850)
37 cd04872 ACT_1ZPV ACT domain pr 96.9 0.0098 2.1E-07 40.3 7.9 68 78-150 2-70 (88)
38 COG2844 GlnD UTP:GlnB (protein 96.8 0.0056 1.2E-07 57.1 8.4 78 66-147 778-857 (867)
39 PRK05092 PII uridylyl-transfer 96.8 0.018 3.9E-07 54.8 12.0 78 67-147 720-804 (931)
40 PRK00275 glnD PII uridylyl-tra 96.8 0.011 2.3E-07 56.2 10.4 80 66-148 688-778 (895)
41 cd04869 ACT_GcvR_2 ACT domains 96.7 0.039 8.6E-07 36.3 9.5 65 80-150 2-73 (81)
42 cd04875 ACT_F4HF-DF N-terminal 96.7 0.039 8.5E-07 36.0 9.4 65 80-149 2-69 (74)
43 PRK00194 hypothetical protein; 96.6 0.018 3.9E-07 39.0 7.8 67 77-148 3-70 (90)
44 PF13291 ACT_4: ACT domain; PD 96.4 0.075 1.6E-06 35.1 9.8 36 78-114 7-42 (80)
45 cd04870 ACT_PSP_1 CT domains f 96.4 0.046 9.9E-07 35.9 8.7 64 80-149 2-66 (75)
46 PRK04374 PII uridylyl-transfer 96.4 0.034 7.3E-07 52.8 10.7 71 76-149 689-761 (869)
47 KOG4029 Transcription factor H 96.2 0.005 1.1E-07 49.3 3.6 52 3-54 116-172 (228)
48 PLN03217 transcription factor 96.1 0.01 2.3E-07 40.8 4.1 49 9-57 20-75 (93)
49 cd04887 ACT_MalLac-Enz ACT_Mal 95.6 0.26 5.5E-06 31.7 9.1 35 80-115 2-36 (74)
50 COG2844 GlnD UTP:GlnB (protein 95.4 0.1 2.2E-06 49.0 8.9 72 70-145 677-749 (867)
51 cd04881 ACT_HSDH-Hom ACT_HSDH_ 95.4 0.21 4.6E-06 31.6 8.2 36 78-114 1-36 (79)
52 cd04894 ACT_ACR-like_1 ACT dom 95.1 0.14 3E-06 33.5 6.5 64 79-145 2-66 (69)
53 cd04886 ACT_ThrD-II-like C-ter 95.0 0.2 4.3E-06 31.3 7.0 34 80-114 1-34 (73)
54 PRK13010 purU formyltetrahydro 94.8 0.22 4.7E-06 41.5 8.6 70 77-150 9-81 (289)
55 PRK06027 purU formyltetrahydro 94.8 0.33 7.1E-06 40.3 9.6 69 77-150 6-77 (286)
56 cd04877 ACT_TyrR N-terminal AC 94.5 0.46 1E-05 30.9 8.1 37 79-117 2-38 (74)
57 TIGR00655 PurU formyltetrahydr 94.2 0.5 1.1E-05 39.2 9.4 62 79-145 2-66 (280)
58 cd04888 ACT_PheB-BS C-terminal 94.2 0.72 1.6E-05 29.5 8.4 35 79-114 2-36 (76)
59 PRK13011 formyltetrahydrofolat 94.1 0.64 1.4E-05 38.6 9.9 68 77-150 7-77 (286)
60 cd04876 ACT_RelA-SpoT ACT dom 94.0 0.4 8.6E-06 28.7 6.5 35 80-115 1-35 (71)
61 cd02116 ACT ACT domains are co 93.4 0.24 5.3E-06 28.1 4.6 35 80-115 1-35 (60)
62 cd04883 ACT_AcuB C-terminal AC 93.3 1.3 2.7E-05 28.1 8.3 35 78-113 2-36 (72)
63 PRK04435 hypothetical protein; 93.3 1.4 3.1E-05 32.9 9.7 43 73-116 65-108 (147)
64 COG3830 ACT domain-containing 93.1 0.3 6.5E-06 34.0 5.2 67 78-149 4-71 (90)
65 cd04874 ACT_Af1403 N-terminal 93.0 1.2 2.6E-05 27.7 7.8 36 79-115 2-37 (72)
66 cd04880 ACT_AAAH-PDT-like ACT 93.0 0.64 1.4E-05 30.2 6.6 35 81-116 3-37 (75)
67 KOG3560 Aryl-hydrocarbon recep 92.9 0.071 1.5E-06 48.0 2.3 37 5-41 34-75 (712)
68 KOG2588 Predicted DNA-binding 92.8 0.042 9.1E-07 52.0 0.8 53 4-56 284-338 (953)
69 PRK08577 hypothetical protein; 92.4 1.8 3.9E-05 31.7 9.0 47 68-115 43-93 (136)
70 cd04905 ACT_CM-PDT C-terminal 92.2 2.2 4.8E-05 28.0 8.9 36 79-115 3-38 (80)
71 cd04889 ACT_PDH-BS-like C-term 92.2 0.88 1.9E-05 27.7 6.1 35 80-115 1-35 (56)
72 cd04879 ACT_3PGDH-like ACT_3PG 92.0 1.5 3.3E-05 26.8 7.2 35 80-115 2-36 (71)
73 KOG3558 Hypoxia-inducible fact 91.8 0.097 2.1E-06 48.2 1.9 39 3-41 53-96 (768)
74 cd04908 ACT_Bt0572_1 N-termina 91.5 0.85 1.8E-05 28.9 5.6 37 79-116 3-39 (66)
75 PRK11589 gcvR glycine cleavage 91.4 0.63 1.4E-05 36.5 5.9 64 76-146 7-71 (190)
76 cd04903 ACT_LSD C-terminal ACT 91.4 1.9 4.1E-05 26.5 7.2 34 79-113 1-34 (71)
77 cd04882 ACT_Bt0572_2 C-termina 91.3 1.4 2.9E-05 27.2 6.4 35 80-115 2-36 (65)
78 KOG3559 Transcriptional regula 91.0 0.18 4E-06 44.1 2.7 40 3-42 8-52 (598)
79 cd04909 ACT_PDH-BS C-terminal 91.0 0.78 1.7E-05 29.0 5.2 36 78-114 2-37 (69)
80 PRK06737 acetolactate synthase 90.9 3.5 7.6E-05 27.7 8.6 37 78-115 3-39 (76)
81 cd04904 ACT_AAAH ACT domain of 89.6 1.6 3.4E-05 28.6 5.8 36 80-116 3-38 (74)
82 PRK00227 glnD PII uridylyl-tra 89.5 2.4 5.3E-05 39.5 8.9 71 74-149 543-615 (693)
83 cd04884 ACT_CBS C-terminal ACT 89.2 3 6.5E-05 26.7 6.9 34 80-114 2-35 (72)
84 PRK11152 ilvM acetolactate syn 88.9 5.2 0.00011 26.8 8.1 37 78-115 4-40 (76)
85 PRK13562 acetolactate synthase 88.5 5.9 0.00013 27.2 8.1 45 79-124 4-50 (84)
86 PRK11895 ilvH acetolactate syn 88.5 6.6 0.00014 30.0 9.3 37 78-115 3-39 (161)
87 PRK07334 threonine dehydratase 88.1 4.9 0.00011 34.7 9.3 36 78-114 327-362 (403)
88 cd04878 ACT_AHAS N-terminal AC 87.8 4.6 9.9E-05 24.7 8.7 35 79-114 2-36 (72)
89 cd04931 ACT_PAH ACT domain of 86.5 4.6 0.0001 27.8 6.8 37 78-115 15-51 (90)
90 TIGR00119 acolac_sm acetolacta 86.1 11 0.00025 28.6 9.3 37 78-115 2-38 (157)
91 cd04902 ACT_3PGDH-xct C-termin 85.6 4.6 0.0001 25.3 6.1 33 80-113 2-34 (73)
92 cd04932 ACT_AKiii-LysC-EC_1 AC 85.0 8.6 0.00019 25.3 8.2 65 79-152 3-70 (75)
93 PF13710 ACT_5: ACT domain; PD 84.7 5.1 0.00011 25.5 5.9 27 89-115 3-29 (63)
94 cd04929 ACT_TPH ACT domain of 84.3 5.5 0.00012 26.3 6.1 33 82-115 5-37 (74)
95 COG0788 PurU Formyltetrahydrof 84.1 8.9 0.00019 32.0 8.4 68 76-148 6-76 (287)
96 cd04922 ACT_AKi-HSDH-ThrA_2 AC 83.7 7.8 0.00017 23.7 7.7 34 79-113 3-39 (66)
97 CHL00100 ilvH acetohydroxyacid 83.5 9.5 0.00021 29.5 8.0 66 78-150 3-71 (174)
98 KOG4447 Transcription factor T 83.4 0.61 1.3E-05 35.6 1.3 44 2-45 84-130 (173)
99 cd04885 ACT_ThrD-I Tandem C-te 82.2 8 0.00017 24.5 6.1 33 81-115 2-34 (68)
100 PF05088 Bac_GDH: Bacterial NA 81.8 12 0.00026 38.1 9.7 71 77-150 489-564 (1528)
101 cd04892 ACT_AK-like_2 ACT doma 81.1 9.2 0.0002 22.7 7.5 34 79-113 2-38 (65)
102 cd04901 ACT_3PGDH C-terminal A 80.9 2.8 6E-05 26.1 3.6 37 80-117 2-38 (69)
103 cd04930 ACT_TH ACT domain of t 80.3 8.8 0.00019 27.6 6.4 37 78-115 42-78 (115)
104 PRK11589 gcvR glycine cleavage 79.3 21 0.00047 27.9 8.8 66 78-149 96-168 (190)
105 cd04937 ACT_AKi-DapG-BS_2 ACT 79.2 13 0.00028 23.2 7.6 22 86-108 13-34 (64)
106 PRK10872 relA (p)ppGpp synthet 76.7 22 0.00047 33.6 9.3 36 78-114 667-702 (743)
107 TIGR00691 spoT_relA (p)ppGpp s 76.4 23 0.00049 33.1 9.3 37 78-115 611-647 (683)
108 PF02120 Flg_hook: Flagellar h 75.5 11 0.00025 24.7 5.5 46 69-114 29-79 (85)
109 cd04918 ACT_AK1-AT_2 ACT domai 74.0 19 0.00041 22.6 6.2 27 89-115 14-40 (65)
110 PRK14626 hypothetical protein; 73.6 20 0.00043 25.7 6.6 26 33-58 7-32 (110)
111 KOG4447 Transcription factor T 73.6 4.5 9.8E-05 30.9 3.3 44 4-47 30-79 (173)
112 PRK14627 hypothetical protein; 73.5 19 0.00041 25.3 6.4 44 34-87 4-47 (100)
113 PRK11092 bifunctional (p)ppGpp 73.4 30 0.00065 32.5 9.3 37 78-115 627-663 (702)
114 KOG3898 Transcription factor N 73.0 2 4.4E-05 35.1 1.5 45 3-47 79-127 (254)
115 PRK08178 acetolactate synthase 72.8 30 0.00065 24.3 7.2 39 77-116 8-46 (96)
116 PRK14623 hypothetical protein; 71.9 23 0.0005 25.3 6.5 26 33-58 3-28 (106)
117 cd04915 ACT_AK-Ectoine_2 ACT d 71.7 22 0.00049 22.5 6.0 50 89-147 15-64 (66)
118 cd04916 ACT_AKiii-YclM-BS_2 AC 70.7 21 0.00046 21.7 7.7 59 79-148 3-65 (66)
119 PF02344 Myc-LZ: Myc leucine z 70.5 4.5 9.8E-05 22.7 2.0 16 5-20 14-29 (32)
120 PRK14625 hypothetical protein; 70.3 23 0.0005 25.4 6.3 26 33-58 4-29 (109)
121 COG4747 ACT domain-containing 69.7 40 0.00086 25.0 7.4 40 79-119 5-44 (142)
122 cd04919 ACT_AK-Hom3_2 ACT doma 69.5 23 0.0005 21.7 7.8 27 86-113 13-39 (66)
123 cd04890 ACT_AK-like_1 ACT doma 69.3 21 0.00046 21.7 5.4 33 86-120 12-44 (62)
124 TIGR00103 DNA_YbaB_EbfC DNA-bi 69.3 28 0.0006 24.4 6.5 25 33-57 7-31 (102)
125 PRK14622 hypothetical protein; 69.0 25 0.00055 24.8 6.2 45 33-87 3-47 (103)
126 KOG3910 Helix loop helix trans 66.8 6.5 0.00014 35.4 3.4 48 3-50 533-585 (632)
127 PRK14621 hypothetical protein; 66.2 30 0.00065 24.8 6.2 45 33-87 6-50 (111)
128 PRK11899 prephenate dehydratas 65.7 51 0.0011 27.3 8.3 37 78-115 195-231 (279)
129 cd04933 ACT_AK1-AT_1 ACT domai 65.3 38 0.00082 22.5 7.3 32 79-111 3-37 (78)
130 PRK00153 hypothetical protein; 65.0 38 0.00082 23.6 6.5 44 33-77 5-48 (104)
131 PRK14629 hypothetical protein; 64.9 36 0.00079 23.9 6.3 23 35-57 7-29 (99)
132 COG3978 Acetolactate synthase 62.8 47 0.001 22.8 7.5 60 78-145 4-66 (86)
133 PRK14624 hypothetical protein; 62.8 39 0.00084 24.5 6.3 45 33-87 8-52 (115)
134 PRK03762 hypothetical protein; 62.3 46 0.001 23.5 6.5 45 33-87 7-51 (103)
135 KOG4395 Transcription factor A 62.3 9.9 0.00021 31.4 3.4 45 3-47 181-229 (285)
136 PF13840 ACT_7: ACT domain ; P 60.1 21 0.00046 22.6 4.1 32 78-110 7-42 (65)
137 cd04923 ACT_AK-LysC-DapG-like_ 59.0 36 0.00078 20.2 7.4 32 79-111 2-36 (63)
138 cd04924 ACT_AK-Arch_2 ACT doma 57.0 41 0.00089 20.3 7.7 58 79-147 3-64 (66)
139 cd04868 ACT_AK-like ACT domain 56.9 35 0.00077 19.5 4.6 24 89-112 14-37 (60)
140 PRK00587 hypothetical protein; 56.7 56 0.0012 23.0 6.1 26 33-58 3-28 (99)
141 cd04920 ACT_AKiii-DAPDC_2 ACT 56.2 47 0.001 20.7 7.0 23 86-109 12-34 (63)
142 cd04912 ACT_AKiii-LysC-EC-like 55.1 50 0.0011 21.2 5.3 31 79-110 3-36 (75)
143 COG4492 PheB ACT domain-contai 54.0 31 0.00066 26.0 4.5 39 77-116 72-111 (150)
144 PRK06382 threonine dehydratase 53.3 72 0.0016 27.5 7.5 35 77-112 330-364 (406)
145 PRK08198 threonine dehydratase 52.1 1.1E+02 0.0023 26.3 8.3 36 77-113 327-362 (404)
146 cd04935 ACT_AKiii-DAPDC_1 ACT 48.9 51 0.0011 21.5 4.6 26 85-111 12-37 (75)
147 TIGR00656 asp_kin_monofn aspar 48.3 1.7E+02 0.0036 25.0 8.9 41 71-112 254-297 (401)
148 PRK08210 aspartate kinase I; R 48.1 1.5E+02 0.0032 25.4 8.5 65 71-147 333-400 (403)
149 cd04921 ACT_AKi-HSDH-ThrA-like 47.9 70 0.0015 20.3 7.3 34 79-113 3-39 (80)
150 PRK07431 aspartate kinase; Pro 47.4 1.5E+02 0.0032 26.9 8.8 65 71-147 342-409 (587)
151 PRK00227 glnD PII uridylyl-tra 47.4 35 0.00076 32.0 4.9 61 77-148 631-691 (693)
152 COG0077 PheA Prephenate dehydr 47.1 1.3E+02 0.0028 25.1 7.7 38 78-116 195-232 (279)
153 COG0317 SpoT Guanosine polypho 46.3 71 0.0015 30.1 6.6 38 78-116 628-665 (701)
154 PRK10622 pheA bifunctional cho 46.2 1.5E+02 0.0032 25.7 8.3 34 82-116 302-335 (386)
155 PRK09034 aspartate kinase; Rev 46.2 1.6E+02 0.0034 26.0 8.6 69 70-148 378-449 (454)
156 TIGR01127 ilvA_1Cterm threonin 45.8 60 0.0013 27.5 5.8 34 78-112 306-339 (380)
157 PRK11898 prephenate dehydratas 45.1 1.7E+02 0.0037 24.1 8.2 37 78-115 197-234 (283)
158 PF04508 Pox_A_type_inc: Viral 45.0 26 0.00056 18.2 2.1 17 40-56 3-19 (23)
159 PRK14628 hypothetical protein; 44.8 1.1E+02 0.0024 22.2 6.2 45 33-87 21-65 (118)
160 PRK15385 magnesium transport p 43.4 1.8E+02 0.0038 23.6 8.3 48 76-124 141-193 (225)
161 PRK06291 aspartate kinase; Pro 43.0 2.3E+02 0.005 24.9 9.2 37 76-113 320-359 (465)
162 cd04934 ACT_AK-Hom3_1 CT domai 42.7 69 0.0015 20.8 4.5 31 80-111 4-37 (73)
163 COG2716 GcvR Glycine cleavage 42.1 1.2E+02 0.0027 23.6 6.4 64 77-146 92-162 (176)
164 cd04911 ACT_AKiii-YclM-BS_1 AC 41.3 1.1E+02 0.0023 20.5 5.8 32 89-121 15-46 (76)
165 COG0440 IlvH Acetolactate synt 40.2 1.4E+02 0.0031 22.9 6.4 67 79-151 6-74 (163)
166 COG1076 DjlA DnaJ-domain-conta 40.2 20 0.00043 27.4 1.8 49 7-55 123-171 (174)
167 PRK14126 cell division protein 40.1 74 0.0016 21.5 4.5 47 9-55 34-82 (85)
168 PF14197 Cep57_CLD_2: Centroso 40.0 45 0.00097 21.8 3.2 27 30-56 39-65 (69)
169 cd04913 ACT_AKii-LysC-BS-like_ 40.0 86 0.0019 19.0 7.9 27 85-112 10-36 (75)
170 PF09849 DUF2076: Uncharacteri 40.0 57 0.0012 26.7 4.5 46 8-55 6-72 (247)
171 PRK10820 DNA-binding transcrip 39.8 52 0.0011 29.4 4.7 41 79-120 2-42 (520)
172 PRK06635 aspartate kinase; Rev 39.7 2.4E+02 0.0052 24.0 9.1 40 76-115 261-300 (404)
173 PLN02551 aspartokinase 38.3 2.8E+02 0.006 25.1 9.0 69 71-149 439-509 (521)
174 PRK06349 homoserine dehydrogen 38.2 2E+02 0.0044 25.0 8.0 36 77-113 348-383 (426)
175 PRK06291 aspartate kinase; Pro 38.0 2.7E+02 0.0058 24.5 8.8 66 71-147 392-461 (465)
176 COG2061 ACT-domain-containing 37.7 62 0.0013 24.9 4.1 36 78-114 6-41 (170)
177 TIGR02263 benz_CoA_red_C benzo 37.7 2.1E+02 0.0046 24.5 7.9 91 7-116 173-270 (380)
178 smart00338 BRLZ basic region l 37.5 30 0.00065 21.8 2.1 19 38-56 26-44 (65)
179 PF14689 SPOB_a: Sensor_kinase 37.5 41 0.00088 21.3 2.7 41 5-51 17-57 (62)
180 PRK05974 phosphoribosylformylg 37.1 1E+02 0.0022 20.4 4.7 39 79-120 2-45 (80)
181 PF00170 bZIP_1: bZIP transcri 36.7 31 0.00067 21.7 2.1 20 37-56 25-44 (64)
182 PRK06635 aspartate kinase; Rev 36.1 2.7E+02 0.0059 23.7 8.7 39 71-110 334-375 (404)
183 PF02700 PurS: Phosphoribosylf 36.0 1.3E+02 0.0028 20.1 5.1 42 79-121 2-48 (80)
184 cd04906 ACT_ThrD-I_1 First of 35.8 1.3E+02 0.0028 19.8 6.8 31 78-111 2-32 (85)
185 PRK08210 aspartate kinase I; R 35.5 1.8E+02 0.0039 24.9 7.1 37 76-112 270-306 (403)
186 COG0849 ftsA Cell division ATP 34.8 2.1E+02 0.0045 25.3 7.4 63 91-153 58-122 (418)
187 TIGR01268 Phe4hydrox_tetr phen 34.5 1.3E+02 0.0029 26.7 6.2 37 78-115 17-53 (436)
188 PF14992 TMCO5: TMCO5 family 33.8 50 0.0011 27.6 3.3 23 33-55 146-168 (280)
189 TIGR00656 asp_kin_monofn aspar 33.8 3E+02 0.0064 23.4 9.1 35 75-110 335-372 (401)
190 PRK09436 thrA bifunctional asp 33.4 3.6E+02 0.0077 25.8 9.3 43 71-114 390-435 (819)
191 cd04936 ACT_AKii-LysC-BS-like_ 33.3 1E+02 0.0023 18.0 7.3 25 86-111 12-36 (63)
192 PF09006 Surfac_D-trimer: Lung 33.3 24 0.00052 21.5 1.0 19 40-58 1-19 (46)
193 PF11619 P53_C: Transcription 32.7 63 0.0014 21.2 2.9 32 68-100 6-38 (71)
194 PF02575 YbaB_DNA_bd: YbaB/Ebf 30.5 1.1E+02 0.0023 20.4 4.1 45 39-84 3-47 (93)
195 PRK08526 threonine dehydratase 30.4 2.7E+02 0.0059 24.1 7.5 37 77-114 326-362 (403)
196 COG4747 ACT domain-containing 30.4 73 0.0016 23.6 3.3 29 80-109 72-100 (142)
197 PF06005 DUF904: Protein of un 29.9 67 0.0015 21.2 2.8 22 33-54 13-34 (72)
198 TIGR00657 asp_kinases aspartat 29.8 3.7E+02 0.008 23.3 8.8 39 71-110 372-413 (441)
199 PRK06545 prephenate dehydrogen 29.2 1.4E+02 0.0029 25.3 5.3 38 77-115 290-327 (359)
200 COG1828 PurS Phosphoribosylfor 29.0 1.7E+02 0.0037 20.0 4.8 43 78-121 2-49 (83)
201 COG3474 Cytochrome c2 [Energy 28.8 65 0.0014 24.0 2.8 35 9-43 91-130 (135)
202 PRK09084 aspartate kinase III; 28.8 2.6E+02 0.0056 24.6 7.1 36 75-111 304-342 (448)
203 PF04083 Abhydro_lipase: Parti 28.3 1.6E+02 0.0034 18.7 4.3 30 97-126 3-32 (63)
204 PF03780 Asp23: Asp23 family; 27.7 2E+02 0.0043 19.4 6.8 48 66-114 47-105 (108)
205 TIGR00719 sda_beta L-serine de 27.5 3E+02 0.0065 21.5 8.7 43 71-114 142-184 (208)
206 PF12180 EABR: TSG101 and ALIX 26.7 75 0.0016 18.2 2.2 13 38-50 23-35 (35)
207 PF15235 GRIN_C: G protein-reg 26.6 72 0.0016 23.9 2.8 25 31-57 66-90 (137)
208 PRK07431 aspartate kinase; Pro 26.0 5E+02 0.011 23.5 11.5 61 75-147 517-580 (587)
209 PRK11790 D-3-phosphoglycerate 25.8 1.7E+02 0.0036 25.4 5.4 54 67-121 328-381 (409)
210 cd04914 ACT_AKi-DapG-BS_1 ACT 25.7 1.8E+02 0.0039 18.2 6.2 39 79-119 3-42 (67)
211 PF00403 HMA: Heavy-metal-asso 25.5 1.6E+02 0.0035 17.7 4.2 47 89-145 10-58 (62)
212 PF13805 Pil1: Eisosome compon 25.2 1.4E+02 0.003 24.9 4.5 37 4-53 143-180 (271)
213 cd04891 ACT_AK-LysC-DapG-like_ 25.0 1.4E+02 0.0031 17.0 6.4 28 85-113 9-36 (61)
214 PF01709 Transcrip_reg: Transc 24.1 1.8E+02 0.0039 23.4 4.9 34 80-116 167-200 (234)
215 TIGR00657 asp_kinases aspartat 24.1 4E+02 0.0088 23.1 7.5 36 75-110 300-336 (441)
216 PF06305 DUF1049: Protein of u 24.0 81 0.0018 19.7 2.4 18 39-56 49-66 (68)
217 TIGR01270 Trp_5_monoox tryptop 23.8 1.5E+02 0.0031 26.7 4.6 37 78-115 32-68 (464)
218 PF03698 UPF0180: Uncharacteri 23.8 1.9E+02 0.0041 19.5 4.2 20 91-110 9-28 (80)
219 COG3074 Uncharacterized protei 23.5 1.3E+02 0.0027 20.1 3.2 24 33-56 13-36 (79)
220 PLN02551 aspartokinase 23.2 2.7E+02 0.006 25.1 6.3 33 77-110 366-401 (521)
221 COG3283 TyrR Transcriptional r 23.0 2E+02 0.0043 25.6 5.1 41 79-120 2-42 (511)
222 PRK04280 arginine repressor; P 22.9 26 0.00057 26.3 -0.1 22 92-113 21-42 (148)
223 PRK13581 D-3-phosphoglycerate 22.5 5.3E+02 0.012 23.1 8.1 39 75-114 450-488 (526)
224 PHA03158 hypothetical protein; 22.5 82 0.0018 25.3 2.5 37 19-55 222-271 (273)
225 PRK09436 thrA bifunctional asp 22.2 6.9E+02 0.015 23.9 9.0 37 76-113 314-353 (819)
226 PF01316 Arg_repressor: Argini 21.7 12 0.00027 24.6 -1.9 21 93-113 23-43 (70)
227 PF07524 Bromo_TP: Bromodomain 21.6 60 0.0013 21.1 1.4 17 90-106 59-75 (77)
228 PF10737 GerPC: Spore germinat 21.6 79 0.0017 24.6 2.3 45 40-84 1-51 (176)
229 cd04917 ACT_AKiii-LysC-EC_2 AC 21.0 2.1E+02 0.0045 17.3 7.4 27 79-106 3-32 (64)
230 PRK14646 hypothetical protein; 20.8 3.7E+02 0.008 20.2 8.4 54 94-151 12-66 (155)
231 PF06345 Drf_DAD: DRF Autoregu 20.8 1.1E+02 0.0023 14.1 1.7 12 90-101 1-12 (15)
232 PHA03386 P10 fibrous body prot 20.2 1.2E+02 0.0026 21.2 2.7 30 27-56 1-30 (94)
No 1
>smart00353 HLH helix loop helix domain.
Probab=99.42 E-value=2e-13 Score=85.34 Aligned_cols=47 Identities=19% Similarity=0.362 Sum_probs=43.1
Q ss_pred chhhhHHHHHHHhHHHhhcCCC----CCCCcccchHHHHHHHHHHHHHHHH
Q 031670 2 SSREQNKAALYEKLMLLRDVTN----STSMNKTSIVVDASKYIEELKQQVE 48 (155)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~p----~~k~DKaSIl~dAI~YIk~Lq~~v~ 48 (155)
..||+||.+||+.|..|++++| ..|+||++||..||+||+.|+.+++
T Consensus 2 ~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 2 ARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999954 5689999999999999999999875
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.33 E-value=1.5e-12 Score=82.94 Aligned_cols=46 Identities=17% Similarity=0.318 Sum_probs=42.3
Q ss_pred chhhhHHHHHHHhHHHhhcCCC-C---CCCcccchHHHHHHHHHHHHHHH
Q 031670 2 SSREQNKAALYEKLMLLRDVTN-S---TSMNKTSIVVDASKYIEELKQQV 47 (155)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~p-~---~k~DKaSIl~dAI~YIk~Lq~~v 47 (155)
++||+||.+||..|..|++++| . .|+||++||..||+||+.|+.++
T Consensus 10 ~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 10 LRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999954 4 88999999999999999999876
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.24 E-value=7.2e-12 Score=79.15 Aligned_cols=43 Identities=21% Similarity=0.379 Sum_probs=39.3
Q ss_pred chhhhHHHHHHHhHHHhhcCCC-C-----CCCcccchHHHHHHHHHHHH
Q 031670 2 SSREQNKAALYEKLMLLRDVTN-S-----TSMNKTSIVVDASKYIEELK 44 (155)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~p-~-----~k~DKaSIl~dAI~YIk~Lq 44 (155)
..||+||.+||+.|..|+.++| . .|+||++||..||+||++||
T Consensus 7 ~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 7 ERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 4799999999999999999954 3 57899999999999999997
No 4
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.62 E-value=5.1e-07 Score=60.41 Aligned_cols=67 Identities=13% Similarity=0.263 Sum_probs=55.7
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHHHHHH
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQAI 147 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai 147 (155)
..|+|.++++ ||+|.+|..+|..+||+|..|.|+|.++...+++-+... ++.+++..+-.+.|.+++
T Consensus 2 Tviev~a~DR-pGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~--~g~kl~d~~~~~~l~~~L 68 (72)
T cd04895 2 TLVKVDSARK-PGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQ--LGNKLTDDSLIAYIEKSL 68 (72)
T ss_pred EEEEEEECCc-CCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECC--CCCCCCCHHHHHHHHHHh
Confidence 3689999999 999999999999999999999999999998888887664 566776555555555554
No 5
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.62 E-value=5.2e-07 Score=60.85 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=56.8
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCH----HHHHHHHHHHHHh
Q 031670 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDA----QVVKEAVLQAIKN 149 (155)
Q Consensus 79 ~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~----~~vk~~l~~ai~~ 149 (155)
.|.|.|+++ ||+|.+|..+|-.+|++|.+|.|+|.++...+++-+... ++.+++. +.|+++|..++.+
T Consensus 3 vveV~~~DR-pGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~--~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 3 VVTVQCRDR-PKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHK--DGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred EEEEEeCCc-CcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcC--CCCccCCHHHHHHHHHHHHHHHhc
Confidence 589999999 999999999999999999999999999988888887665 5666653 4566666666643
No 6
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.54 E-value=1.3e-06 Score=58.55 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=53.0
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEecccccCCCCCCC---HHHHHHHHHHHHH
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC-SDRFQLEAVGGDHIEGHADGID---AQVVKEAVLQAIK 148 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~-~~~~~l~~~~~~~~~~~~~~~~---~~~vk~~l~~ai~ 148 (155)
+.+.|.|+.+ ||+|.++..+|..+|++|++|.|+| .+|..++++.+... ++...+ .+.++++|.++++
T Consensus 1 ~~~ei~~~Dr-~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~--~~~~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 1 FLLKLFCSDR-KGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA--RELLHTKKRREETYDYLRAVLG 72 (76)
T ss_pred CEEEEEECCC-CCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC--CCCCCCHHHHHHHHHHHHHHHc
Confidence 4689999999 9999999999999999999999997 78899999888654 223222 3335555555554
No 7
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.54 E-value=2e-06 Score=56.92 Aligned_cols=69 Identities=22% Similarity=0.378 Sum_probs=54.0
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEecccccCCCCCCCHHHHHHHHHHHHHh
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS-DRFQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKN 149 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~-~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~ 149 (155)
..|.|.|+.+ ||+|.++..+|..+|++|++|.+.|. +|+.++++.+... ++.....++-.+.+.+.|.+
T Consensus 2 ~~i~v~~~Dr-~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~--~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 2 TEVFIYTPDR-PGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP--DGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEEEecCC-CCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC--CCCCCChHHHHHHHHHHHHh
Confidence 4688999999 99999999999999999999999887 6899999887653 34455444444555555543
No 8
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.46 E-value=2.4e-06 Score=57.64 Aligned_cols=65 Identities=14% Similarity=0.187 Sum_probs=53.6
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEecccccCCCCCCCH----HHHHHHHHHHH
Q 031670 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVS--CSDRFQLEAVGGDHIEGHADGIDA----QVVKEAVLQAI 147 (155)
Q Consensus 79 ~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is--~~~~~~l~~~~~~~~~~~~~~~~~----~~vk~~l~~ai 147 (155)
.+.|.|+++ ||+|.+|..+|..+|++|..|.|+ |.++...++|-+ .. ++..++. +.++++|..++
T Consensus 2 vlev~a~DR-pGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~--~g~kl~d~~~~~~L~~~L~~~l 72 (75)
T cd04896 2 LLQIRCVDQ-KGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QS--DGKKIMDPKKQAALCARLREEM 72 (75)
T ss_pred EEEEEeCCc-ccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eC--CCCccCCHHHHHHHHHHHHHHh
Confidence 588999999 999999999999999999999999 999999998888 43 4555643 45566666554
No 9
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.25 E-value=2.1e-05 Score=52.30 Aligned_cols=48 Identities=21% Similarity=0.175 Sum_probs=43.7
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccc
Q 031670 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHI 127 (155)
Q Consensus 79 ~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~ 127 (155)
.|+|.++++ ||+|.+|..+|..+|++|+.|.+++.++..+.++.+...
T Consensus 2 ~~~v~~~Dr-~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~ 49 (74)
T cd04925 2 AIELTGTDR-PGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE 49 (74)
T ss_pred EEEEEECCC-CCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC
Confidence 578999999 999999999999999999999999999988888877543
No 10
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.21 E-value=2.5e-05 Score=51.70 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=54.8
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEecccccCCCCCCCHHHHHHHHHHHH
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS-DRFQLEAVGGDHIEGHADGIDAQVVKEAVLQAI 147 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~-~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai 147 (155)
..|-|.|+.+ ||+|.++..+|..+||+|++|++.+. +|+.+.++.+-.. ..=+.+++.++|..++
T Consensus 2 ~eI~V~~~Dr-~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~----~~~~~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDK-PKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW----KRGETAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCC-cchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC----CccchHHHHHHHHHhh
Confidence 3578899999 99999999999999999999999975 7899999887643 3336778888888775
No 11
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.19 E-value=2.8e-06 Score=73.34 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=42.3
Q ss_pred hhhhHHHHHHHhHHHhhcCCCCC-----CCcccchHHHHHHHHHHHHHHHHHH
Q 031670 3 SREQNKAALYEKLMLLRDVTNST-----SMNKTSIVVDASKYIEELKQQVETL 50 (155)
Q Consensus 3 sER~RR~kln~~~~~LRsl~p~~-----k~DKaSIl~dAI~YIk~Lq~~v~~L 50 (155)
-|||||.+||+++..|-.|+|.. +..|.+||.-+.+||++||+..+..
T Consensus 240 VERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 240 VERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 49999999999999999997633 6679999999999999999987743
No 12
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.10 E-value=2.6e-06 Score=66.49 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=47.1
Q ss_pred hhhhHHHHHHHhHHHhhcCCC-CC-------CCcccchHHHHHHHHHHHHHHHHHHHhhhccC
Q 031670 3 SREQNKAALYEKLMLLRDVTN-ST-------SMNKTSIVVDASKYIEELKQQVETLNQEIGTS 57 (155)
Q Consensus 3 sER~RR~kln~~~~~LRsl~p-~~-------k~DKaSIl~dAI~YIk~Lq~~v~~Le~e~~~~ 57 (155)
+||+||+.||.-+..|..|+| .+ |..||-||..+|+||..|.++...-+.|+..+
T Consensus 69 aEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L 131 (229)
T KOG1319|consen 69 AEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTL 131 (229)
T ss_pred HHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999977 22 66799999999999999998887777665543
No 13
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.99 E-value=9.8e-05 Score=48.72 Aligned_cols=67 Identities=25% Similarity=0.317 Sum_probs=52.0
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHHHHHHH
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQAIK 148 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~ 148 (155)
..|.|.++.+ +|+|.+|..+|.++|++|+++.+.+.++..+..+.+... ++...+. +-.+.+.++|+
T Consensus 2 tri~V~~~D~-~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~--~~~~~~~-~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDR-VGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA--NGNPVDP-KTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCc-cCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECC--CCCcCCH-HHHHHHHHHhc
Confidence 4688899999 999999999999999999999999988877777766543 3333444 44556666665
No 14
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=97.98 E-value=3.5e-06 Score=68.69 Aligned_cols=48 Identities=15% Similarity=0.231 Sum_probs=42.0
Q ss_pred chhhhHHHHHHHhHHHhhcCCC---------CCCCcccchHHHHHHHHHHHHHHHHH
Q 031670 2 SSREQNKAALYEKLMLLRDVTN---------STSMNKTSIVVDASKYIEELKQQVET 49 (155)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~p---------~~k~DKaSIl~dAI~YIk~Lq~~v~~ 49 (155)
+-||+||.|||+-|..|+.|++ .+|++||=||.-|++|++.|+..-..
T Consensus 38 l~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 38 LLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 3499999999999999999965 26889999999999999999876543
No 15
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.90 E-value=0.00024 Score=45.72 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=49.6
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHHHHHHH
Q 031670 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQAIK 148 (155)
Q Consensus 79 ~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~ 148 (155)
.|.|.|+.+ +|++.+|+.+|.++++++.++++.+.+++.+..+.+... ++...+.+ -.+.|.++|.
T Consensus 2 ~l~v~~~d~-~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~--~~~~~~~~-~~~~i~~~l~ 67 (70)
T cd04899 2 VLELTALDR-PGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA--DGQPLDPE-RQEALRAALG 67 (70)
T ss_pred EEEEEEcCC-ccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC--CCCcCCHH-HHHHHHHHHH
Confidence 578999999 999999999999999999999999988877777766543 22234443 3334544443
No 16
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.69 E-value=3.3e-05 Score=71.61 Aligned_cols=44 Identities=11% Similarity=0.185 Sum_probs=40.6
Q ss_pred hhhhHHHHHHHhHHHhhcCCC--C---CCCcccchHHHHHHHHHHHHHH
Q 031670 3 SREQNKAALYEKLMLLRDVTN--S---TSMNKTSIVVDASKYIEELKQQ 46 (155)
Q Consensus 3 sER~RR~kln~~~~~LRsl~p--~---~k~DKaSIl~dAI~YIk~Lq~~ 46 (155)
+|||||++||..+..|-+++| + -|+||.+||-.||.+||.+++.
T Consensus 27 ~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 27 IEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 699999999999999999965 4 7999999999999999998875
No 17
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.68 E-value=7e-05 Score=60.83 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=46.5
Q ss_pred chhhhHHHHHHHhHHHhhcC--CC-CCCCcccchHHHHHHHHHHHHHHHHHHHhhhc
Q 031670 2 SSREQNKAALYEKLMLLRDV--TN-STSMNKTSIVVDASKYIEELKQQVETLNQEIG 55 (155)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl--~p-~~k~DKaSIl~dAI~YIk~Lq~~v~~Le~e~~ 55 (155)
|.||||=+|.|+-|.+|.-- +| -...-|.-||-.||+||..||.-++++.+...
T Consensus 124 MRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 124 MRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 57888889999999999776 44 56789999999999999999999999876433
No 18
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.66 E-value=0.0011 Score=41.73 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=46.1
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC---eEEEEEecccccCCCCCCCHHHHHHHHHHH
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR---FQLEAVGGDHIEGHADGIDAQVVKEAVLQA 146 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~---~~l~~~~~~~~~~~~~~~~~~~vk~~l~~a 146 (155)
+.|.|.|+.+ ||+|.++...|.++|++|.++...+.++ +.+....... ...+.+.++|.+.
T Consensus 1 ~~v~v~~~dr-pG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 1 YRVRVIVPDR-PGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE-------EDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEEETS-TTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG-------HGHHHHHHHHHHH
T ss_pred CEEEEEcCCC-CCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC-------CCHHHHHHHHHcc
Confidence 3688999999 9999999999999999999999999876 3333333222 3556666666554
No 19
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.65 E-value=0.0006 Score=64.46 Aligned_cols=82 Identities=11% Similarity=0.154 Sum_probs=65.2
Q ss_pred CCeEEEEEeC--CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCH----HHH
Q 031670 66 LPVVTVETLE--KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDA----QVV 139 (155)
Q Consensus 66 ~p~V~V~~~~--~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~----~~v 139 (155)
.|.|.+.... +...|.|.+.++ ||+|.+|..+|..+|++|++|.|+|.++..++++.+... ++..++. +.|
T Consensus 801 ~~~V~i~~~~~~~~T~i~V~a~Dr-pGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~--~g~~l~~~~~~~~l 877 (895)
T PRK00275 801 PTQVTISNDAQRPVTVLEIIAPDR-PGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDA--DNQPLSDPQLCSRL 877 (895)
T ss_pred CCEEEEEECCCCCeEEEEEEECCC-CCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECC--CCCCCCCHHHHHHH
Confidence 3556666544 347899999999 999999999999999999999999999999999988664 4445533 457
Q ss_pred HHHHHHHHHhh
Q 031670 140 KEAVLQAIKNV 150 (155)
Q Consensus 140 k~~l~~ai~~~ 150 (155)
+++|.+++...
T Consensus 878 ~~~L~~~L~~~ 888 (895)
T PRK00275 878 QDAICEQLDAR 888 (895)
T ss_pred HHHHHHHHhcc
Confidence 77777777544
No 20
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.63 E-value=0.00041 Score=65.49 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=62.9
Q ss_pred CeEEEEEeC--CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCH---HHHHH
Q 031670 67 PVVTVETLE--KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDA---QVVKE 141 (155)
Q Consensus 67 p~V~V~~~~--~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~---~~vk~ 141 (155)
|.|.+.... .-..|.|.|.++ ||+|.+|..+|..+|++|.+|.|+|.++-..+++-+... ++..++. +.|++
T Consensus 796 ~~V~~d~~~s~~~TvlEV~a~DR-pGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~--~g~~l~~~~~~~l~~ 872 (884)
T PRK05007 796 TEVSFLPTHTDRRSYMELIALDQ-PGLLARVGKIFADLGISLHGARITTIGERVEDLFILATA--DRRALNEELQQELRQ 872 (884)
T ss_pred CEEEEccCCCCCeEEEEEEeCCc-hHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcC--CCCcCCHHHHHHHHH
Confidence 345554432 337899999999 999999999999999999999999999999988887654 4566763 46666
Q ss_pred HHHHHHHh
Q 031670 142 AVLQAIKN 149 (155)
Q Consensus 142 ~l~~ai~~ 149 (155)
+|..++..
T Consensus 873 ~L~~~l~~ 880 (884)
T PRK05007 873 RLTEALNP 880 (884)
T ss_pred HHHHHHhh
Confidence 66666654
No 21
>PRK04374 PII uridylyl-transferase; Provisional
Probab=97.58 E-value=0.00091 Score=63.12 Aligned_cols=78 Identities=19% Similarity=0.234 Sum_probs=61.3
Q ss_pred CeEEEEEeC--CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCH---HHHHH
Q 031670 67 PVVTVETLE--KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDA---QVVKE 141 (155)
Q Consensus 67 p~V~V~~~~--~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~---~~vk~ 141 (155)
|.|.+.... +-..|.|.+..+ ||+|.+|..+|..+|++|+.|.|+|.++..++++.+... ++..++. +.|++
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~Dr-pGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~--~g~~~~~~~~~~l~~ 860 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPDR-PGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDE--HDRPLSESARQALRD 860 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCCc-CcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC--CCCcCChHHHHHHHH
Confidence 456666544 337899999999 999999999999999999999999999999999988654 3444443 45666
Q ss_pred HHHHHH
Q 031670 142 AVLQAI 147 (155)
Q Consensus 142 ~l~~ai 147 (155)
+|..++
T Consensus 861 ~L~~~l 866 (869)
T PRK04374 861 ALCACL 866 (869)
T ss_pred HHHHHh
Confidence 666555
No 22
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.47 E-value=0.0016 Score=60.81 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=64.9
Q ss_pred CCeEEEEEe-CCeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHHH
Q 031670 66 LPVVTVETL-EKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVL 144 (155)
Q Consensus 66 ~p~V~V~~~-~~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~ 144 (155)
.|-|.+... .+.+.|.|.|+++ ||++.+|..+|..+|++|++|++.+.+|+.+.++.+... ++.....+.+++.|.
T Consensus 587 ~~~v~~~~~~~~~~~V~V~~~Dr-pGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~--~~~~~~~~~l~~~L~ 663 (774)
T PRK03381 587 GVHVEIAPADPHMVEVTVVAPDR-RGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR--FGSPPDAALLRQDLR 663 (774)
T ss_pred CCEEEEeeCCCCeEEEEEEecCC-ccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC--CCCcchHHHHHHHHH
Confidence 344555443 3568999999999 999999999999999999999999988998888887654 333345678888888
Q ss_pred HHHHh
Q 031670 145 QAIKN 149 (155)
Q Consensus 145 ~ai~~ 149 (155)
+++..
T Consensus 664 ~~L~~ 668 (774)
T PRK03381 664 RALDG 668 (774)
T ss_pred HHHcC
Confidence 87764
No 23
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.43 E-value=9e-05 Score=61.72 Aligned_cols=48 Identities=17% Similarity=0.335 Sum_probs=42.0
Q ss_pred hhhhHHHHHHHhHHHhhcCCC---CCCCcccchHHHHHHHHHHHHHHHHHH
Q 031670 3 SREQNKAALYEKLMLLRDVTN---STSMNKTSIVVDASKYIEELKQQVETL 50 (155)
Q Consensus 3 sER~RR~kln~~~~~LRsl~p---~~k~DKaSIl~dAI~YIk~Lq~~v~~L 50 (155)
.||||=.-||.-|..||+|.| ..|..||.||.-+.+||.+|+.+-.+|
T Consensus 67 NERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 67 NERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred hHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 377777999999999999966 678999999999999999998776554
No 24
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.41 E-value=0.0011 Score=62.35 Aligned_cols=78 Identities=19% Similarity=0.294 Sum_probs=60.1
Q ss_pred CeEEEEEeCC--eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCH---HHHHH
Q 031670 67 PVVTVETLEK--GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDA---QVVKE 141 (155)
Q Consensus 67 p~V~V~~~~~--~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~---~~vk~ 141 (155)
|.|.+..... -..|.|.+.++ ||+|.+|..+|.++|++|..|.|+|.++-+.+++-+... ++..++. +.|++
T Consensus 771 ~~V~~dn~~s~~~T~iev~a~Dr-pGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~--~g~~l~~~~~~~l~~ 847 (854)
T PRK01759 771 TEVRFLNEEKQEQTEMELFALDR-AGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQ--QGQALDEEERKALKS 847 (854)
T ss_pred CEEEEccCCCCCeEEEEEEeCCc-hHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECC--CCCcCChHHHHHHHH
Confidence 3455544332 37899999999 999999999999999999999999999988888887664 4566664 44555
Q ss_pred HHHHHH
Q 031670 142 AVLQAI 147 (155)
Q Consensus 142 ~l~~ai 147 (155)
+|..++
T Consensus 848 ~L~~~l 853 (854)
T PRK01759 848 RLLSNL 853 (854)
T ss_pred HHHHHh
Confidence 555443
No 25
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.39 E-value=0.0017 Score=60.56 Aligned_cols=75 Identities=21% Similarity=0.165 Sum_probs=59.1
Q ss_pred eEEEEEeCC--eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHHHH
Q 031670 68 VVTVETLEK--GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQ 145 (155)
Q Consensus 68 ~V~V~~~~~--~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ 145 (155)
.|.+....+ -..|.|.|.++ ||+|.+|..+|..+|++|.+|.|+|.++..++++.+... ++..++.+ .+.|.+
T Consensus 696 ~v~~~~~~~~~~t~i~V~a~Dr-pGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~--~g~~~~~~--~~~l~~ 770 (774)
T PRK03381 696 RVLWLDGASPDATVLEVRAADR-PGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGA--AGGPLADA--RAAVEQ 770 (774)
T ss_pred EEEEEECCCCCeEEEEEEeCCc-hhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECC--CCCcCchH--HHHHHH
Confidence 455554432 48899999999 999999999999999999999999999999999988664 45566543 455555
Q ss_pred HH
Q 031670 146 AI 147 (155)
Q Consensus 146 ai 147 (155)
++
T Consensus 771 ~L 772 (774)
T PRK03381 771 AV 772 (774)
T ss_pred Hh
Confidence 43
No 26
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.33 E-value=0.0034 Score=41.70 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=49.2
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEecccccCCCCCCCHHHHHHHHHHHHHh
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKN 149 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~ 149 (155)
.+.|++.++++ ||++..+..+|.++|.++.+++.++.++ |++...+.-. .-+.+.++.+|......
T Consensus 2 ~~vItv~G~Dr-pGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~------~~~~~~l~~~L~~l~~~ 68 (76)
T PF13740_consen 2 QLVITVVGPDR-PGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP------EDSLERLESALEELAEE 68 (76)
T ss_dssp EEEEEEEEE---TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES------HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCC-CcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC------cccHHHHHHHHHHHHHH
Confidence 47899999999 9999999999999999999999999988 6665544221 11667777777766544
No 27
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.31 E-value=0.0036 Score=59.01 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=62.3
Q ss_pred CCeEEEEEeC--CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEecccccCCCCCCCHH---HH
Q 031670 66 LPVVTVETLE--KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC-SDRFQLEAVGGDHIEGHADGIDAQ---VV 139 (155)
Q Consensus 66 ~p~V~V~~~~--~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~-~~~~~l~~~~~~~~~~~~~~~~~~---~v 139 (155)
.|.|.+.... +...|.|.|+++ ||+|.+|..+|..+||+|++|.|.| .+|..++++.+... ++..++.+ .|
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~~~Dr-pGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~--~g~~~~~~~~~~l 740 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIYCQDQ-ANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL--NGKLLEFDRRRQL 740 (854)
T ss_pred CCEEEEEecCCCCeEEEEEEecCC-ccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC--CCCCCCHHHHHHH
Confidence 4556665543 457899999999 9999999999999999999999987 78899999988664 45555543 45
Q ss_pred HHHHHHHHH
Q 031670 140 KEAVLQAIK 148 (155)
Q Consensus 140 k~~l~~ai~ 148 (155)
++.|.+++.
T Consensus 741 ~~~L~~aL~ 749 (854)
T PRK01759 741 EQALTKALN 749 (854)
T ss_pred HHHHHHHHc
Confidence 666666654
No 28
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.31 E-value=0.0029 Score=60.12 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=62.6
Q ss_pred CCeEEEEEeC--CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCC----HHHH
Q 031670 66 LPVVTVETLE--KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGID----AQVV 139 (155)
Q Consensus 66 ~p~V~V~~~~--~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~----~~~v 139 (155)
.|.|.+.... +...|.|.|.++ ||+|.+|..+|..+|++|.+|.|+|.++...+++.+... ++..++ .+.|
T Consensus 830 ~~~V~~~~~~s~~~t~i~I~~~Dr-pGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~--~g~~i~~~~~~~~l 906 (931)
T PRK05092 830 PPRVTIDNEASNRFTVIEVNGRDR-PGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDL--FGLKITNEARQAAI 906 (931)
T ss_pred CCEEEEeeCCCCCeEEEEEEECCc-CcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCC--CCCcCCCHHHHHHH
Confidence 3556666644 347899999999 999999999999999999999999999988888887654 344443 3557
Q ss_pred HHHHHHHHH
Q 031670 140 KEAVLQAIK 148 (155)
Q Consensus 140 k~~l~~ai~ 148 (155)
+++|..++.
T Consensus 907 ~~~L~~~L~ 915 (931)
T PRK05092 907 RRALLAALA 915 (931)
T ss_pred HHHHHHHhc
Confidence 777776664
No 29
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.28 E-value=0.0061 Score=38.65 Aligned_cols=47 Identities=30% Similarity=0.516 Sum_probs=39.7
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEeccc
Q 031670 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDH 126 (155)
Q Consensus 79 ~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~ 126 (155)
.|.|.|+.+ +|++.+++.+|.++|+.+.++.+.+.++.....+.+..
T Consensus 2 ~l~i~~~d~-~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~ 48 (70)
T cd04873 2 VVEVYAPDR-PGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD 48 (70)
T ss_pred EEEEEeCCC-CCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEEC
Confidence 478999999 99999999999999999999999988765555555443
No 30
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.26 E-value=0.0045 Score=58.59 Aligned_cols=81 Identities=21% Similarity=0.267 Sum_probs=63.2
Q ss_pred CCeEEEEEeC--CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEecccccCCCCCCCH---HHH
Q 031670 66 LPVVTVETLE--KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS-DRFQLEAVGGDHIEGHADGIDA---QVV 139 (155)
Q Consensus 66 ~p~V~V~~~~--~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~-~~~~l~~~~~~~~~~~~~~~~~---~~v 139 (155)
.|-|.+.... +...|.|.|+++ ||+|.+|..+|..+||+|++|.|.|. +|..++++.+... ++..++. +.|
T Consensus 688 ~p~V~i~~~~~~~~t~V~V~a~Dr-pGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~--~g~~~~~~~~~~I 764 (884)
T PRK05007 688 KPLVLLSKQATRGGTEIFIWSPDR-PYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEP--DGSPLSQDRHQVI 764 (884)
T ss_pred CCeEEEEecCCCCeEEEEEEecCC-cCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECC--CCCCCCHHHHHHH
Confidence 4556665543 458899999999 99999999999999999999999886 5599998888664 4445554 347
Q ss_pred HHHHHHHHHh
Q 031670 140 KEAVLQAIKN 149 (155)
Q Consensus 140 k~~l~~ai~~ 149 (155)
++.|.+++..
T Consensus 765 ~~~L~~aL~~ 774 (884)
T PRK05007 765 RKALEQALTQ 774 (884)
T ss_pred HHHHHHHHcC
Confidence 7777777744
No 31
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.19 E-value=0.005 Score=57.90 Aligned_cols=81 Identities=21% Similarity=0.307 Sum_probs=62.1
Q ss_pred CCeEEEEEe--CCeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEecccccCCCCCCCH----HH
Q 031670 66 LPVVTVETL--EKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVS-CSDRFQLEAVGGDHIEGHADGIDA----QV 138 (155)
Q Consensus 66 ~p~V~V~~~--~~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is-~~~~~~l~~~~~~~~~~~~~~~~~----~~ 138 (155)
.|.|.+... ++...|.|.++++ ||+|.+|..+|..+||+|++|.|. +.+|..++++.+... ++..++. +.
T Consensus 655 ~~~v~~~~~~~~~~t~i~V~~~Dr-pgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~--~g~~~~~~~~~~~ 731 (850)
T TIGR01693 655 GPLALIDGTRPSGGTEVFIYAPDQ-PGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDL--FGSPPAAERVFQE 731 (850)
T ss_pred CCEEEEeccCCCCeEEEEEEeCCC-CcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECC--CCCCCCcHHHHHH
Confidence 445555432 2457899999999 999999999999999999999999 568899999988764 3444543 34
Q ss_pred HHHHHHHHHHh
Q 031670 139 VKEAVLQAIKN 149 (155)
Q Consensus 139 vk~~l~~ai~~ 149 (155)
|.+.|..++..
T Consensus 732 i~~~L~~~L~~ 742 (850)
T TIGR01693 732 LLQGLVDVLAG 742 (850)
T ss_pred HHHHHHHHHcC
Confidence 77777777654
No 32
>PRK03059 PII uridylyl-transferase; Provisional
Probab=97.15 E-value=0.0035 Score=59.11 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=49.8
Q ss_pred CeEEEEEeC--CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecc
Q 031670 67 PVVTVETLE--KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGD 125 (155)
Q Consensus 67 p~V~V~~~~--~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~ 125 (155)
|.|.+.... +...|.|.|+++ ||+|.+|..+|..+|++|++|.|+|.++.+++++.+.
T Consensus 774 ~~V~~~~~~~~~~T~i~V~a~Dr-pGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~ 833 (856)
T PRK03059 774 PRVDLRPDERGQYYILSVSANDR-PGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID 833 (856)
T ss_pred ceEEEEEcCCCCEEEEEEEeCCc-chHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc
Confidence 345554433 347899999999 9999999999999999999999999999999998873
No 33
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.03 E-value=0.00085 Score=54.25 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=40.4
Q ss_pred hhhHHHHHHHhHHHhhcCCCC--CC--CcccchHHHHHHHHHHHHHHHHHHHh
Q 031670 4 REQNKAALYEKLMLLRDVTNS--TS--MNKTSIVVDASKYIEELKQQVETLNQ 52 (155)
Q Consensus 4 ER~RR~kln~~~~~LRsl~p~--~k--~DKaSIl~dAI~YIk~Lq~~v~~Le~ 52 (155)
||+||..|.+.|..|+-++|. .. -+.++||--|..||+.|+.+....+.
T Consensus 67 Ek~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~ 119 (232)
T KOG2483|consen 67 EKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQ 119 (232)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHH
Confidence 899999999999999999762 22 23588999999999999988766544
No 34
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.97 E-value=0.012 Score=39.17 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=51.0
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEecccccCCCCCCCHHHHHHHHHHHHHh
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKN 149 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~ 149 (155)
+.|++.|+++ ||++.+|-..|.+.|.++..++....++ |.+..... . + ..+.+++.+.+......
T Consensus 2 ~iltv~g~Dr-~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~-~----~-~~~~~~l~~~l~~~~~~ 67 (77)
T cd04893 2 LVISALGTDR-PGILNELTRAVSESGCNILDSRMAILGTEFALTMLVE-G----S-WDAIAKLEAALPGLARR 67 (77)
T ss_pred EEEEEEeCCC-ChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEE-e----c-cccHHHHHHHHHHHHHH
Confidence 5789999999 9999999999999999999999998776 55544332 1 1 24778888887775544
No 35
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.95 E-value=0.0076 Score=56.89 Aligned_cols=79 Identities=20% Similarity=0.393 Sum_probs=59.1
Q ss_pred CCeEEEEEeC--CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEecccccCCCCCCC----HHH
Q 031670 66 LPVVTVETLE--KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC-SDRFQLEAVGGDHIEGHADGID----AQV 138 (155)
Q Consensus 66 ~p~V~V~~~~--~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~-~~~~~l~~~~~~~~~~~~~~~~----~~~ 138 (155)
.|-|-++... +...|.|.|+++ ||++.++..+|..+|++|++|.|.| .+|+.++++.+... ++. .. .+.
T Consensus 665 ~~~v~~~~~~~~~~~~v~i~~~d~-~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~--~~~-~~~~~~~~~ 740 (856)
T PRK03059 665 TPIVRARLSPAGEGLQVMVYTPDQ-PDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP--EED-VHYRDIINL 740 (856)
T ss_pred CCeEEEEecCCCCeEEEEEEecCC-CcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC--CCC-CChHHHHHH
Confidence 3444454433 568899999999 9999999999999999999999955 68899999988654 233 33 344
Q ss_pred HHHHHHHHHH
Q 031670 139 VKEAVLQAIK 148 (155)
Q Consensus 139 vk~~l~~ai~ 148 (155)
|++.|.+++.
T Consensus 741 i~~~l~~~l~ 750 (856)
T PRK03059 741 VEHELAERLA 750 (856)
T ss_pred HHHHHHHHHc
Confidence 5555655553
No 36
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.88 E-value=0.0095 Score=56.05 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=56.8
Q ss_pred CeEEEEEeCC--eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCH---HHHHH
Q 031670 67 PVVTVETLEK--GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDA---QVVKE 141 (155)
Q Consensus 67 p~V~V~~~~~--~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~---~~vk~ 141 (155)
|.|.+.-... -..|.|.|.++ ||+|.+|..+|..+|++|.++.++|.++-...++.+... .+..++. +.|++
T Consensus 767 ~~V~~d~~~s~~~t~~~v~~~Dr-pGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~--~g~~~~~~~~~~l~~ 843 (850)
T TIGR01693 767 PRVTILNTASRKATIMEVRALDR-PGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDL--FGLKLTDEEEQRLLE 843 (850)
T ss_pred CeEEEccCCCCCeEEEEEEECCc-cHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECC--CCCCCCHHHHHHHHH
Confidence 3455554432 37899999999 999999999999999999999999998866666665442 3445553 44555
Q ss_pred HHHHHH
Q 031670 142 AVLQAI 147 (155)
Q Consensus 142 ~l~~ai 147 (155)
+|..++
T Consensus 844 ~L~~~l 849 (850)
T TIGR01693 844 VLAASV 849 (850)
T ss_pred HHHHHh
Confidence 555443
No 37
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.86 E-value=0.0098 Score=40.35 Aligned_cols=68 Identities=18% Similarity=0.263 Sum_probs=52.9
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEecccccCCCCCCCHHHHHHHHHHHHHhh
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKNV 150 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~~ 150 (155)
+.|.+.|+++ ||++..+...|-..|+++.+.+..+.++ |.+.+.+. .+ +...+.+++.+.|......+
T Consensus 2 ~vl~i~g~D~-pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~-~~---~~~~~~~~L~~~l~~l~~~~ 70 (88)
T cd04872 2 AVITVVGKDR-VGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVD-IS---ESNLDFAELQEELEELGKEL 70 (88)
T ss_pred EEEEEEcCCC-CCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEE-eC---CCCCCHHHHHHHHHHHHHHc
Confidence 5789999999 9999999999999999999999888665 66655443 21 22467888888887765543
No 38
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0056 Score=57.12 Aligned_cols=78 Identities=19% Similarity=0.289 Sum_probs=61.0
Q ss_pred CCeEEEEEeC--CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHH
Q 031670 66 LPVVTVETLE--KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAV 143 (155)
Q Consensus 66 ~p~V~V~~~~--~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l 143 (155)
.|.|.+.... +...+++.+..+ ||+|..+-.+|.+++|++++|.|+|+|.-..+++++... .+..+ ..++++.+
T Consensus 778 ~p~v~i~~t~~~~~t~lEv~alDR-pGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~--~~~~l-~~~~~q~l 853 (867)
T COG2844 778 PPRVTILPTASNDKTVLEVRALDR-PGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDA--DGQAL-NAELRQSL 853 (867)
T ss_pred CCceeeccccCCCceEEEEEeCCc-ccHHHHHHHHHHhcccceeeeeeccccccceeEEEEecc--ccccC-CHHHHHHH
Confidence 3566666654 347899999999 999999999999999999999999999977777776654 45566 44556666
Q ss_pred HHHH
Q 031670 144 LQAI 147 (155)
Q Consensus 144 ~~ai 147 (155)
.+.+
T Consensus 854 ~~~l 857 (867)
T COG2844 854 LQRL 857 (867)
T ss_pred HHHH
Confidence 5554
No 39
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.83 E-value=0.018 Score=54.81 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=59.6
Q ss_pred CeEEEEEeC--CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEecccccCCCCCC-C---HHHH
Q 031670 67 PVVTVETLE--KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC-SDRFQLEAVGGDHIEGHADGI-D---AQVV 139 (155)
Q Consensus 67 p~V~V~~~~--~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~-~~~~~l~~~~~~~~~~~~~~~-~---~~~v 139 (155)
|.|.+.... +...|.|.|+.+ +|+|.+|..+|..+|++|++|.|.| .+|++++++.+... ++... + .+.|
T Consensus 720 ~~v~~~~~~~~~~t~v~I~~~Dr-~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~--~g~~~~~~~~~~~l 796 (931)
T PRK05092 720 LATEVRPDPARGVTEVTVLAADH-PGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDA--FGRDEDEPRRLARL 796 (931)
T ss_pred cEEEEEecCCCCeEEEEEEeCCC-CcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECC--CCCCCCCHHHHHHH
Confidence 446565543 468999999999 9999999999999999999999988 57899998876543 23222 2 4556
Q ss_pred HHHHHHHH
Q 031670 140 KEAVLQAI 147 (155)
Q Consensus 140 k~~l~~ai 147 (155)
.+.|.+++
T Consensus 797 ~~~L~~~l 804 (931)
T PRK05092 797 AKAIEDAL 804 (931)
T ss_pred HHHHHHHH
Confidence 66776666
No 40
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.82 E-value=0.011 Score=56.17 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=59.7
Q ss_pred CCeEEEEEeC-----CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEecccccCCCCCC-C---
Q 031670 66 LPVVTVETLE-----KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC-SDRFQLEAVGGDHIEGHADGI-D--- 135 (155)
Q Consensus 66 ~p~V~V~~~~-----~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~-~~~~~l~~~~~~~~~~~~~~~-~--- 135 (155)
.|-|-+.... +...|.|.|+.+ ||+|.++..+|..+|++|++|.|.| .+|+.++++.+... ++..+ .
T Consensus 688 ~~~v~~~~~~~~~~~~~t~V~V~~~Dr-pgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~--~g~~~~~~~~ 764 (895)
T PRK00275 688 GPLVLIKETTQREFEGGTQIFIYAPDQ-HDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD--DGEPIGDNPA 764 (895)
T ss_pred CCeEEEEecCccCCCCeEEEEEEeCCC-CcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC--CCCCccchHH
Confidence 3444454433 458899999999 9999999999999999999999855 57899999988664 33332 2
Q ss_pred -HHHHHHHHHHHHH
Q 031670 136 -AQVVKEAVLQAIK 148 (155)
Q Consensus 136 -~~~vk~~l~~ai~ 148 (155)
.+.|.+.|.+++.
T Consensus 765 r~~~i~~~L~~~L~ 778 (895)
T PRK00275 765 RIEQIREGLTEALR 778 (895)
T ss_pred HHHHHHHHHHHHHc
Confidence 2346677776654
No 41
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.66 E-value=0.039 Score=36.28 Aligned_cols=65 Identities=14% Similarity=0.236 Sum_probs=50.7
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC------C-eEEEEEecccccCCCCCCCHHHHHHHHHHHHHhh
Q 031670 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD------R-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKNV 150 (155)
Q Consensus 80 i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~------~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~~ 150 (155)
|++.|+.+ ||++.+|-..|...|+++.+.+..+.+ + |.+...+.- ....+...+++.|...-..+
T Consensus 2 l~v~g~D~-~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~-----p~~~~~~~l~~~l~~l~~~~ 73 (81)
T cd04869 2 VEVVGNDR-PGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLAL-----PAGTDLDALREELEELCDDL 73 (81)
T ss_pred EEEEeCCC-CCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEec-----CCCCCHHHHHHHHHHHHHHh
Confidence 68999999 999999999999999999999998876 3 555443321 12467888988888765554
No 42
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.65 E-value=0.039 Score=36.00 Aligned_cols=65 Identities=9% Similarity=0.149 Sum_probs=48.5
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee-CC--eEEEEEecccccCCCCCCCHHHHHHHHHHHHHh
Q 031670 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS-DR--FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKN 149 (155)
Q Consensus 80 i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~-~~--~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~ 149 (155)
|++.|+++ ||++.+|...|-++|+++.+.+..+. ++ |.+.+...-. ....+.++++++|...-..
T Consensus 2 i~v~g~D~-~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~----~~~~~~~~l~~~l~~l~~~ 69 (74)
T cd04875 2 LTLSCPDR-PGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE----GFDLSREALEAAFAPVAAE 69 (74)
T ss_pred EEEEcCCC-CCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC----CCCCCHHHHHHHHHHHHHH
Confidence 78999999 99999999999999999999988863 22 5554443211 1136788888888765443
No 43
>PRK00194 hypothetical protein; Validated
Probab=96.62 E-value=0.018 Score=39.03 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=50.3
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEecccccCCCCCCCHHHHHHHHHHHHH
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIK 148 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~ 148 (155)
.+.|.+.|+++ ||++.++...|-+.|+++.+.+..+.++ |.+.+.+ ... +...+.+++++.|...-.
T Consensus 3 ~~~ltv~g~Dr-pGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v-~~~---~~~~~~~~l~~~l~~l~~ 70 (90)
T PRK00194 3 KAIITVIGKDK-VGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLV-DIS---ESKKDFAELKEELEELGK 70 (90)
T ss_pred eEEEEEEcCCC-CCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEE-Eec---CCCCCHHHHHHHHHHHHH
Confidence 47899999999 9999999999999999999998887666 5554333 221 223567888877776443
No 44
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.45 E-value=0.075 Score=35.07 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=31.8
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~ 114 (155)
+.|+|.+.++ +|+|.+|..++.+.|..+.+.++...
T Consensus 7 ~~l~i~~~dr-~GlL~dI~~~i~~~~~nI~~i~~~~~ 42 (80)
T PF13291_consen 7 VRLRIEAEDR-PGLLADITSVISENGVNIRSINARTN 42 (80)
T ss_dssp EEEEEEEE---TTHHHHHHHHHHCSSSEEEEEEEEE-
T ss_pred EEEEEEEEcC-CCHHHHHHHHHHHCCCCeEEEEeEEe
Confidence 6789999999 99999999999999999999999995
No 45
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.44 E-value=0.046 Score=35.92 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=51.0
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEecccccCCCCCCCHHHHHHHHHHHHHh
Q 031670 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKN 149 (155)
Q Consensus 80 i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~ 149 (155)
|+|.++++ ||++.++..+|.++|+++.+.+.++.++ |++...+.- ....+.++++++|......
T Consensus 2 vtv~G~Dr-pGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~-----p~~~~~~~l~~~l~~l~~~ 66 (75)
T cd04870 2 ITVTGPDR-PGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQI-----PDSADSEALLKDLLFKAHE 66 (75)
T ss_pred EEEEcCCC-CCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEc-----CCCCCHHHHHHHHHHHHHH
Confidence 78899999 9999999999999999999998888776 777654432 1225788888888776543
No 46
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.40 E-value=0.034 Score=52.75 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=55.6
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEecccccCCCC-CCCHHHHHHHHHHHHHh
Q 031670 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC-SDRFQLEAVGGDHIEGHAD-GIDAQVVKEAVLQAIKN 149 (155)
Q Consensus 76 ~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~-~~~~~l~~~~~~~~~~~~~-~~~~~~vk~~l~~ai~~ 149 (155)
+...|.|.|+.+ ||++.+|..+|..+|++|++|.|.| .+|+.++++.+... ++. .-....|.+.|.+++..
T Consensus 689 ~~~~v~v~~~d~-~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~--~~~~~~~~~~i~~~l~~~l~~ 761 (869)
T PRK04374 689 DALEVFVYSPDR-DGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ--DTYADGDPQRLAAALRQVLAG 761 (869)
T ss_pred CeEEEEEEeCCC-ccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC--CCCChHHHHHHHHHHHHHHcC
Confidence 568899999999 9999999999999999999999998 57899999988664 222 11234466666666543
No 47
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.21 E-value=0.005 Score=49.32 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=44.0
Q ss_pred hhhhHHHHHHHhHHHhhcCCC-----CCCCcccchHHHHHHHHHHHHHHHHHHHhhh
Q 031670 3 SREQNKAALYEKLMLLRDVTN-----STSMNKTSIVVDASKYIEELKQQVETLNQEI 54 (155)
Q Consensus 3 sER~RR~kln~~~~~LRsl~p-----~~k~DKaSIl~dAI~YIk~Lq~~v~~Le~e~ 54 (155)
.||+|=+-+|..|..||.++| .+|.-|..+|.-||.||+.|+.-++.-+...
T Consensus 116 RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 116 RERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 478888999999999999943 4677899999999999999998887766544
No 48
>PLN03217 transcription factor ATBS1; Provisional
Probab=96.08 E-value=0.01 Score=40.79 Aligned_cols=49 Identities=18% Similarity=0.403 Sum_probs=40.1
Q ss_pred HHHHHhHHHhhcCCC-C---CCCcccc---hHHHHHHHHHHHHHHHHHHHhhhccC
Q 031670 9 AALYEKLMLLRDVTN-S---TSMNKTS---IVVDASKYIEELKQQVETLNQEIGTS 57 (155)
Q Consensus 9 ~kln~~~~~LRsl~p-~---~k~DKaS---Il~dAI~YIk~Lq~~v~~Le~e~~~~ 57 (155)
+.||+....|++|+| + ...+|+| +|.+|-.||+.|...|.+|...+..+
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~L 75 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSEL 75 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999966 2 2335554 69999999999999999998876654
No 49
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.58 E-value=0.26 Score=31.66 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=32.2
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 80 i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
++|.+..+ ||+|.+|+.++.+.|.++.+.+.....
T Consensus 2 l~v~~~d~-~g~L~~i~~~i~~~~~nI~~v~~~~~~ 36 (74)
T cd04887 2 LRLELPNR-PGMLGRVTTAIGEAGGDIGAIDLVEQG 36 (74)
T ss_pred EEEEeCCC-CchHHHHHHHHHHcCCcEEEEEEEEec
Confidence 78899999 999999999999999999999987764
No 50
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.1 Score=49.01 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=57.1
Q ss_pred EEEEeCCeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEecccccCCCCCCCHHHHHHHHHH
Q 031670 70 TVETLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS-DRFQLEAVGGDHIEGHADGIDAQVVKEAVLQ 145 (155)
Q Consensus 70 ~V~~~~~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~-~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ 145 (155)
.++...++..|.|.|+.+ |++++.+..++...|++|+.|.|-|. +|+.++++.+... ++..+. ++....+.+
T Consensus 677 ~~r~~~~~teV~V~a~d~-p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~--~g~~~~-~dr~~~~~~ 749 (867)
T COG2844 677 SVRPHSGGTEVFVYAPDR-PRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEP--DGFPVE-EDRRAALRG 749 (867)
T ss_pred eecccCCceEEEEEcCCC-ccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecC--CCCccc-hhHHHHHHH
Confidence 444456789999999999 99999999999999999999999885 7899999988765 444454 444444333
No 51
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.39 E-value=0.21 Score=31.64 Aligned_cols=36 Identities=8% Similarity=0.309 Sum_probs=32.9
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~ 114 (155)
++|+|.+..+ +|.+.+++..|.+.|+++.+.+..+.
T Consensus 1 ~yl~i~~~d~-~g~l~~i~~~l~~~~i~I~~~~~~~~ 36 (79)
T cd04881 1 YYLRLTVKDK-PGVLAKITGILAEHGISIESVIQKEA 36 (79)
T ss_pred CEEEEEeCCC-CcHHHHHHHHHHHcCCCeEEEEEccc
Confidence 5789999999 99999999999999999999887664
No 52
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.14 E-value=0.14 Score=33.47 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=47.0
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEE-ecccccCCCCCCCHHHHHHHHHH
Q 031670 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAV-GGDHIEGHADGIDAQVVKEAVLQ 145 (155)
Q Consensus 79 ~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~-~~~~~~~~~~~~~~~~vk~~l~~ 145 (155)
.|+|.|+++ .|+=.++...+-++||.+....++|.+..-+.++ ++... ....+.=+-+|+-|.+
T Consensus 2 vitvnCPDk-tGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~--~~~~~rW~lLK~RL~~ 66 (69)
T cd04894 2 VITINCPDK-TGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRP--PSIKVRWDLLKNRLMS 66 (69)
T ss_pred EEEEeCCCc-cCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCC--CCCcccHHHHHHHHHh
Confidence 489999999 9999999999999999999999999997222222 22221 2334556667776654
No 53
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.96 E-value=0.2 Score=31.27 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=30.2
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 031670 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (155)
Q Consensus 80 i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~ 114 (155)
+.|.++.+ ||.|.+|+.+|.+.|+++.+.+....
T Consensus 1 ~~v~~~d~-~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 1 LRVELPDR-PGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred CEEEeCCC-CChHHHHHHHHHHcCCCEEEEEEEec
Confidence 46789999 99999999999999999998887654
No 54
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.83 E-value=0.22 Score=41.54 Aligned_cols=70 Identities=10% Similarity=0.197 Sum_probs=52.2
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEE--e-eCCeEEEEEecccccCCCCCCCHHHHHHHHHHHHHhh
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVS--C-SDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKNV 150 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is--~-~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~~ 150 (155)
.+.|+|.|+++ +|+...|-..|-+.|+++.+++-. + .+.|.+.+..... ....++.++++++|...-..+
T Consensus 9 ~~iitv~G~Dr-~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~---~~~~~~~~~l~~~l~~l~~~l 81 (289)
T PRK13010 9 SYVLTLACPSA-PGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQ---SAEAASVDTFRQEFQPVAEKF 81 (289)
T ss_pred CEEEEEECCCC-CCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcC---CCCCCCHHHHHHHHHHHHHHh
Confidence 37899999999 999999999999999999999885 2 3345444332211 123578899999888765554
No 55
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.77 E-value=0.33 Score=40.30 Aligned_cols=69 Identities=9% Similarity=0.145 Sum_probs=53.5
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEe--eCC-eEEEEEecccccCCCCCCCHHHHHHHHHHHHHhh
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC--SDR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKNV 150 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~--~~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~~ 150 (155)
.+.|++.|+++ ||++..|-.+|-++|+++.+.+.++ .+| |.+.+.+.- +....+.++++++|...-..+
T Consensus 6 ~~vitv~G~Dr-pGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~----~~~~~~~~~L~~~L~~l~~~l 77 (286)
T PRK06027 6 RYVLTLSCPDR-PGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG----DGLIFNLETLRADFAALAEEF 77 (286)
T ss_pred eEEEEEECCCC-CcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe----CCCCCCHHHHHHHHHHHHHHh
Confidence 47899999999 9999999999999999999999998 666 666554432 122346888888887665443
No 56
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=94.51 E-value=0.46 Score=30.89 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=33.7
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCe
Q 031670 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRF 117 (155)
Q Consensus 79 ~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~ 117 (155)
.++|.|..+ +|++.+|+.++.+.+.++.+.++.+. ++
T Consensus 2 ~l~I~~~dr-~Gll~dI~~~i~~~~~nI~~~~~~~~-~~ 38 (74)
T cd04877 2 RLEITCEDR-LGITQEVLDLLVEHNIDLRGIEIDPK-GR 38 (74)
T ss_pred EEEEEEEcc-chHHHHHHHHHHHCCCceEEEEEecC-Ce
Confidence 588999999 99999999999999999999998775 43
No 57
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=94.22 E-value=0.5 Score=39.19 Aligned_cols=62 Identities=10% Similarity=0.120 Sum_probs=49.3
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--C-eEEEEEecccccCCCCCCCHHHHHHHHHH
Q 031670 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD--R-FQLEAVGGDHIEGHADGIDAQVVKEAVLQ 145 (155)
Q Consensus 79 ~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~--~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ 145 (155)
.|++.|+++ +|++..|-..|-+.|.++++++-+..+ + |.+...+. . .+...+.+++++++..
T Consensus 2 ~itv~g~D~-~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~-~---~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQ-KGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQ-L---EGFRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCC-CChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEE-e---CCCCCCHHHHHHHHHH
Confidence 579999999 999999999999999999999988753 4 66654332 1 1234788999998888
No 58
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.19 E-value=0.72 Score=29.53 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=31.5
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 031670 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (155)
Q Consensus 79 ~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~ 114 (155)
.+.|.++.+ ||++.+|+.+|.+.|.++...+.+..
T Consensus 2 ~l~i~~~d~-~g~l~~I~~~la~~~inI~~i~~~~~ 36 (76)
T cd04888 2 TLSLLLEHR-PGVLSKVLNTIAQVRGNVLTINQNIP 36 (76)
T ss_pred EEEEEecCC-CchHHHHHHHHHHcCCCEEEEEeCCC
Confidence 578999999 99999999999999999999887553
No 59
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=94.10 E-value=0.64 Score=38.63 Aligned_cols=68 Identities=10% Similarity=0.208 Sum_probs=53.0
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--C-eEEEEEecccccCCCCCCCHHHHHHHHHHHHHhh
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD--R-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKNV 150 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~--~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~~ 150 (155)
.+.|+|.|+++ ||++..+-..|-++|+++...+..+.. + |.+.+.+.- ....+..+++++|...-...
T Consensus 7 ~~vitv~G~Dr-pGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~-----p~~~~~~~L~~~L~~l~~~l 77 (286)
T PRK13011 7 TFVLTLSCPSA-AGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHS-----EEGLDEDALRAGFAPIAARF 77 (286)
T ss_pred eEEEEEEeCCC-CCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEec-----CCCCCHHHHHHHHHHHHHHh
Confidence 47899999999 999999999999999999999987532 2 777654421 22467899998888765543
No 60
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=93.96 E-value=0.4 Score=28.73 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=31.4
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 80 i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
+++.|..+ +|.+.+++..|...++++.+..+...+
T Consensus 1 l~v~~~~~-~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (71)
T cd04876 1 IRVEAIDR-PGLLADITTVIAEEKINILSVNTRTDD 35 (71)
T ss_pred CEEEEecc-CcHHHHHHHHHHhCCCCEEEEEeEECC
Confidence 46889999 999999999999999999999887765
No 61
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=93.41 E-value=0.24 Score=28.09 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=31.2
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 80 i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
|.+.|+.. +|.+.+++..|...|+.+........+
T Consensus 1 i~i~~~~~-~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDR-PGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCC-CchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46889999 999999999999999999999877653
No 62
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.29 E-value=1.3 Score=28.09 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=30.5
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC 113 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~ 113 (155)
..+.+..+++ ||.|.+++..|.+.|+++.+.....
T Consensus 2 ~~~~v~~~d~-pG~l~~i~~~l~~~~inI~~i~~~~ 36 (72)
T cd04883 2 SQIEVRVPDR-PGQLADIAAIFKDRGVNIVSVLVYP 36 (72)
T ss_pred cEEEEEECCC-CCHHHHHHHHHHHcCCCEEEEEEec
Confidence 4678889999 9999999999999999999876544
No 63
>PRK04435 hypothetical protein; Provisional
Probab=93.29 E-value=1.4 Score=32.93 Aligned_cols=43 Identities=26% Similarity=0.315 Sum_probs=37.2
Q ss_pred EeCCeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee-CC
Q 031670 73 TLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS-DR 116 (155)
Q Consensus 73 ~~~~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~-~~ 116 (155)
..|..+.+.+.++++ +|+|.+|++.|.+.|.+|...+.+.. +|
T Consensus 65 ~~~r~vtL~i~l~Dr-~GlLs~Il~~IA~~~aNIltI~q~i~~~g 108 (147)
T PRK04435 65 VKGKIITLSLLLEDR-SGTLSKVLNVIAEAGGNILTINQSIPLQG 108 (147)
T ss_pred CCCcEEEEEEEEecC-CCHHHHHHHHHHHcCCCeEEEEEEcCCCC
Confidence 455679999999999 99999999999999999999886553 45
No 64
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=93.06 E-value=0.3 Score=33.99 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=53.4
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEecccccCCCCCCCHHHHHHHHHHHHHh
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKN 149 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~ 149 (155)
+.|+|.-.++ +|+...+-.+|-++|+++++.+=+-.+| |++-..+.-. ....+...++..|..+..+
T Consensus 4 avITV~GkDr-~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~----~~~~d~~~lr~~l~~~~~~ 71 (90)
T COG3830 4 AVITVIGKDR-VGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS----KEVVDFAALRDELAAEGKK 71 (90)
T ss_pred EEEEEEcCCC-CchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC----hHhccHHHHHHHHHHHHHh
Confidence 6789999999 9999999999999999999988777776 8887766321 3356777777777666554
No 65
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.04 E-value=1.2 Score=27.66 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=32.1
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 79 ~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
.+.+.++.+ +|.+.+++..|.+.++++.+.+..+.+
T Consensus 2 ~l~i~~~d~-~g~l~~i~~~l~~~~~~i~~~~~~~~~ 37 (72)
T cd04874 2 ALSIIAEDK-PGVLRDLTGVIAEHGGNITYTQQFIER 37 (72)
T ss_pred eEEEEeCCC-CChHHHHHHHHHhCCCCEEEEEEeccC
Confidence 478899999 999999999999999999998877653
No 66
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=92.97 E-value=0.64 Score=30.15 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=30.0
Q ss_pred EEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 031670 81 NVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (155)
Q Consensus 81 ~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~ 116 (155)
-+..+++ ||.|.++++.|...|+++.+....+..+
T Consensus 3 ~~~l~d~-pG~L~~vL~~f~~~~vni~~I~Srp~~~ 37 (75)
T cd04880 3 VFSLKNK-PGALAKALKVFAERGINLTKIESRPSRK 37 (75)
T ss_pred EEEeCCc-CCHHHHHHHHHHHCCCCEEEEEeeecCC
Confidence 4555788 9999999999999999999998887643
No 67
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=92.88 E-value=0.071 Score=48.03 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=32.9
Q ss_pred hhHHHHHHHhHHHhhcCCC-----CCCCcccchHHHHHHHHH
Q 031670 5 EQNKAALYEKLMLLRDVTN-----STSMNKTSIVVDASKYIE 41 (155)
Q Consensus 5 R~RR~kln~~~~~LRsl~p-----~~k~DKaSIl~dAI~YIk 41 (155)
+|-|+|||.-|..|-+|.| ++|.||.|||-=++.|++
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 3558999999999999944 899999999999999985
No 68
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=92.78 E-value=0.042 Score=52.01 Aligned_cols=53 Identities=23% Similarity=0.460 Sum_probs=46.4
Q ss_pred hhhHHHHHHHhHHHhhcCCC--CCCCcccchHHHHHHHHHHHHHHHHHHHhhhcc
Q 031670 4 REQNKAALYEKLMLLRDVTN--STSMNKTSIVVDASKYIEELKQQVETLNQEIGT 56 (155)
Q Consensus 4 ER~RR~kln~~~~~LRsl~p--~~k~DKaSIl~dAI~YIk~Lq~~v~~Le~e~~~ 56 (155)
|+|=|--||+++..||.++| -.|+.|.+++.-||+||++|+..-+.+..+.+.
T Consensus 284 EKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~ 338 (953)
T KOG2588|consen 284 EKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENAS 338 (953)
T ss_pred HHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhh
Confidence 77888999999999999975 579999999999999999999888887765443
No 69
>PRK08577 hypothetical protein; Provisional
Probab=92.38 E-value=1.8 Score=31.70 Aligned_cols=47 Identities=17% Similarity=0.336 Sum_probs=38.5
Q ss_pred eEEEEEeC----CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 68 VVTVETLE----KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 68 ~V~V~~~~----~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
++-+.... +.+.|.|.+.++ +|+|.+|+..|.+.++++.+.+..+..
T Consensus 43 ~~~~~~~~~~~k~~~~I~V~~~Dr-~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 43 EIHLEPIALPGKKLVEIELVVEDR-PGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred EEEEEEcCCCCccEEEEEEEEcCC-CCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 45555442 258899999999 999999999999999999988877753
No 70
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=92.21 E-value=2.2 Score=27.97 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=30.7
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 79 ~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
.+.+..+++ +|.|.++++.|.++|+++.+....+..
T Consensus 3 sl~~~~~d~-~G~L~~il~~f~~~~ini~~i~s~p~~ 38 (80)
T cd04905 3 SIVFTLPNK-PGALYDVLGVFAERGINLTKIESRPSK 38 (80)
T ss_pred EEEEEECCC-CCHHHHHHHHHHHCCcCEEEEEEEEcC
Confidence 455666788 999999999999999999999877763
No 71
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=92.20 E-value=0.88 Score=27.66 Aligned_cols=35 Identities=20% Similarity=0.469 Sum_probs=31.0
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 80 i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
|.+.++.+ ||.+.+++..|.+.|+++.+..+...+
T Consensus 1 ~~v~~~d~-~G~l~~i~~~l~~~~inI~~~~~~~~~ 35 (56)
T cd04889 1 LSVFVENK-PGRLAEVTEILAEAGINIKAISIAETR 35 (56)
T ss_pred CEEEeCCC-CChHHHHHHHHHHcCCCEeeEEEEEcc
Confidence 45788999 999999999999999999988877765
No 72
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=91.96 E-value=1.5 Score=26.84 Aligned_cols=35 Identities=11% Similarity=0.240 Sum_probs=31.6
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 80 i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
+.|.++.+ +|.+.+++..|.+.|+++.+..+...+
T Consensus 2 l~v~~~d~-~g~l~~i~~~l~~~~~nI~~~~~~~~~ 36 (71)
T cd04879 2 LLIVHKDV-PGVIGKVGTILGEHGINIAAMQVGRKE 36 (71)
T ss_pred EEEEecCC-CCHHHHHHHHHHhcCCCeeeEEEeccC
Confidence 57889999 999999999999999999999887754
No 73
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=91.83 E-value=0.097 Score=48.24 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=34.4
Q ss_pred hhhhHHHHHHHhHHHhhcCC--C---CCCCcccchHHHHHHHHH
Q 031670 3 SREQNKAALYEKLMLLRDVT--N---STSMNKTSIVVDASKYIE 41 (155)
Q Consensus 3 sER~RR~kln~~~~~LRsl~--p---~~k~DKaSIl~dAI~YIk 41 (155)
|-|-||.|=|+-|+.|.-++ | ++..|||||+-=||.|++
T Consensus 53 AARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 53 AARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 45789999999999999994 4 577899999999999986
No 74
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=91.45 E-value=0.85 Score=28.89 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=32.5
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 031670 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (155)
Q Consensus 79 ~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~ 116 (155)
.+.|..+++ ||.|.++++.|.+.|+++.+..+.+.++
T Consensus 3 ri~v~v~d~-pG~La~v~~~l~~~~inI~~i~~~~~~~ 39 (66)
T cd04908 3 QLSVFLENK-PGRLAAVTEILSEAGINIRALSIADTSE 39 (66)
T ss_pred EEEEEEcCC-CChHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 477889999 9999999999999999999988766554
No 75
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=91.43 E-value=0.63 Score=36.48 Aligned_cols=64 Identities=9% Similarity=0.162 Sum_probs=49.9
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEecccccCCCCCCCHHHHHHHHHHH
Q 031670 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQA 146 (155)
Q Consensus 76 ~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~a 146 (155)
..+.|++.++++ ||++..|-.+|.++|.++..++.+..+| |++...+.. ...+...++.+|-..
T Consensus 7 ~~lviTviG~Dr-pGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~------~~~~~~~le~~L~~l 71 (190)
T PRK11589 7 HYLVITALGADR-PGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG------SWNAITLIESTLPLK 71 (190)
T ss_pred cEEEEEEEcCCC-ChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC------ChhHHHHHHHHHHhh
Confidence 457899999999 9999999999999999999999999887 777655521 122566666665443
No 76
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.38 E-value=1.9 Score=26.54 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=30.5
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 031670 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC 113 (155)
Q Consensus 79 ~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~ 113 (155)
++.+.++.+ +|.+.++...|.+.|+++.+.....
T Consensus 1 ~l~i~~~d~-~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 1 TLIVVHKDK-PGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred CEEEEeCCC-CChHHHHHHHHHHcCcCeeeeEEEe
Confidence 367889999 9999999999999999999888766
No 77
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.30 E-value=1.4 Score=27.16 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=29.5
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 80 i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
+.|.-+.+ ||.|.+++..|.+.|+++.+...+...
T Consensus 2 i~v~~~d~-pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 2 LAVEVPDK-PGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred EEEEeCCC-CcHHHHHHHHHHHCCCChhheEEEccC
Confidence 56777899 999999999999999999877665543
No 78
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=91.03 E-value=0.18 Score=44.10 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=35.3
Q ss_pred hhhhHHHHHHHhHHHhhcCCC-----CCCCcccchHHHHHHHHHH
Q 031670 3 SREQNKAALYEKLMLLRDVTN-----STSMNKTSIVVDASKYIEE 42 (155)
Q Consensus 3 sER~RR~kln~~~~~LRsl~p-----~~k~DKaSIl~dAI~YIk~ 42 (155)
+-|.||++-|--|+.|-.+.| .+..||+||+-=|-.|||-
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 458999999999999999955 4678999999999999984
No 79
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.02 E-value=0.78 Score=29.00 Aligned_cols=36 Identities=14% Similarity=0.316 Sum_probs=31.7
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~ 114 (155)
+.+.+.++.+ ||.|.+++..|.+.|+++........
T Consensus 2 ~~~~v~~~d~-~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 2 YDLYVDVPDE-PGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEEcCCC-CCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 3578899999 99999999999999999998876664
No 80
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=90.88 E-value=3.5 Score=27.66 Aligned_cols=37 Identities=11% Similarity=0.256 Sum_probs=33.2
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
..+.+..+++ ||.|.++...|..-|+++.+-++...+
T Consensus 3 ~tisi~v~n~-pGVL~Ri~~lf~rRgfNI~Sl~vg~te 39 (76)
T PRK06737 3 HTFSLVIHND-PSVLLRISGIFARRGYYISSLNLNERD 39 (76)
T ss_pred EEEEEEEecC-CCHHHHHHHHHhccCcceEEEEecccC
Confidence 4678889999 999999999999999999999888754
No 81
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=89.62 E-value=1.6 Score=28.56 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=30.8
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 031670 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (155)
Q Consensus 80 i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~ 116 (155)
+-+..+++ ||.|.++|..|...|+++.+....+..+
T Consensus 3 l~f~l~~~-pG~L~~vL~~f~~~~iNlt~IeSRP~~~ 38 (74)
T cd04904 3 LIFSLKEE-VGALARALKLFEEFGVNLTHIESRPSRR 38 (74)
T ss_pred EEEEeCCC-CcHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence 34455778 9999999999999999999999888754
No 82
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=89.52 E-value=2.4 Score=39.48 Aligned_cols=71 Identities=20% Similarity=0.206 Sum_probs=54.8
Q ss_pred eCCeEEEEEEe-ccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEecccccCCCCCCCHHHHHHHHHHHHHh
Q 031670 74 LEKGFLINVYL-EKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKN 149 (155)
Q Consensus 74 ~~~~~~i~I~c-~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~ 149 (155)
.+++..++|.. +++ +|+++++...|--.|+.|.+|++.+ +| .+.+..+... .+...++..+.|.+..++..
T Consensus 543 ~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~---~~~~~~~~~~~~~~~~~~~~ 615 (693)
T PRK00227 543 VEEDGFFTVIWHGDY-PRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRAN---GPQDFDPQEFLQAYKSGVYS 615 (693)
T ss_pred cccCCeEEEEecCCc-ccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecC---CCCCCChHHHHHHHHHhhcC
Confidence 34455666666 899 9999999999999999999999999 55 4444333333 47788999999998887653
No 83
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.23 E-value=3 Score=26.66 Aligned_cols=34 Identities=15% Similarity=0.374 Sum_probs=29.8
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 031670 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (155)
Q Consensus 80 i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~ 114 (155)
+.+.-+.+ ||.|.++++.|.+.|.++.+......
T Consensus 2 l~v~~~d~-pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDK-PGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCC-CccHHHHHHHHHHCCCeEEEEEeccc
Confidence 56777899 99999999999999999998876664
No 84
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=88.91 E-value=5.2 Score=26.77 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=33.1
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
..+.+.-+++ ||.|.+++..|..-|+++.+.++...+
T Consensus 4 ~~lsi~v~n~-pGVL~Ri~~lf~rRGfnI~sl~v~~t~ 40 (76)
T PRK11152 4 HQLTIKARFR-PEVLERVLRVVRHRGFQVCSMNMTQNT 40 (76)
T ss_pred EEEEEEEECC-ccHHHHHHHHHhcCCeeeeeEEeeecC
Confidence 4577888999 999999999999999999999998853
No 85
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=88.55 E-value=5.9 Score=27.18 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=36.5
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC--eEEEEEec
Q 031670 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR--FQLEAVGG 124 (155)
Q Consensus 79 ~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~--~~l~~~~~ 124 (155)
.|.+..+.+ ||.|.+|-..|...|+++.+.+++...+ ++--.+++
T Consensus 4 ~isvlVeN~-~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv 50 (84)
T PRK13562 4 ILKLQVADQ-VSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQV 50 (84)
T ss_pred EEEEEEECC-CCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEE
Confidence 578888999 9999999999999999999999888653 44333343
No 86
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=88.50 E-value=6.6 Score=30.00 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=33.3
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
..+.|.-+++ ||.|.+|...|...|+++.+..+...+
T Consensus 3 ~~IsV~veN~-pGvL~rI~~lf~rrg~NI~Sl~v~~te 39 (161)
T PRK11895 3 HTLSVLVENE-PGVLSRVAGLFSRRGYNIESLTVGPTE 39 (161)
T ss_pred EEEEEEEcCC-CcHHHHHHHHHHhCCCcEEEEEeeecC
Confidence 3578888999 999999999999999999999888865
No 87
>PRK07334 threonine dehydratase; Provisional
Probab=88.07 E-value=4.9 Score=34.68 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=33.9
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~ 114 (155)
+.|.|.+..+ +|+|.+|+..|.+.+++|.+++..+.
T Consensus 327 v~l~I~~~dr-~GlL~dI~~~is~~~~nI~~v~~~~~ 362 (403)
T PRK07334 327 ARLRVDIRDR-PGALARVTALIGEAGANIIEVSHQRL 362 (403)
T ss_pred EEEEEEeCCC-CCHHHHHHHHHhhCCCceEEEEEEec
Confidence 8999999999 99999999999999999999998764
No 88
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=87.77 E-value=4.6 Score=24.73 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=31.6
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 031670 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (155)
Q Consensus 79 ~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~ 114 (155)
++.+.+..+ +|.+.+|+..|.+.++++.+.+..+.
T Consensus 2 ~l~i~~~d~-~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04878 2 TLSVLVENE-PGVLNRISGLFARRGFNIESLTVGPT 36 (72)
T ss_pred EEEEEEcCC-CcHHHHHHHHHHhCCCCEEEEEeeec
Confidence 577889999 99999999999999999999988765
No 89
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.48 E-value=4.6 Score=27.78 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=32.5
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
..+-+..+++ ||.|.++|..|...|+++.+....+..
T Consensus 15 tslif~l~~~-pGsL~~vL~~Fa~~~INLt~IeSRP~~ 51 (90)
T cd04931 15 ISLIFSLKEE-VGALAKVLRLFEEKDINLTHIESRPSR 51 (90)
T ss_pred EEEEEEcCCC-CcHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 5566667888 999999999999999999999988864
No 90
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=86.09 E-value=11 Score=28.57 Aligned_cols=37 Identities=22% Similarity=0.424 Sum_probs=33.6
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
..+.|.-+++ ||.|.+|...|...|+++.+..+...+
T Consensus 2 ~~isI~ven~-pGvL~rI~~lf~rrg~NI~Sl~v~~t~ 38 (157)
T TIGR00119 2 HILSVLVENE-PGVLSRVAGLFTRRGFNIESLTVGPTE 38 (157)
T ss_pred EEEEEEEcCC-CcHHHHHHHHHHhCCceEEEEEEeecC
Confidence 3578888999 999999999999999999999988875
No 91
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=85.57 E-value=4.6 Score=25.28 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=28.6
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 031670 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC 113 (155)
Q Consensus 80 i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~ 113 (155)
+-+..+.+ +|.+.++...|.+.|+++.+.....
T Consensus 2 l~v~~~d~-~G~l~~i~~~l~~~~inI~~~~~~~ 34 (73)
T cd04902 2 LVVRNTDR-PGVIGKVGTILGEAGINIAGMQVGR 34 (73)
T ss_pred EEEEeCCC-CCHHHHHHHHHHHcCcChhheEeec
Confidence 45678889 9999999999999999998877655
No 92
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.04 E-value=8.6 Score=25.27 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=41.2
Q ss_pred EEEEE---eccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHHHHHHHhhcc
Q 031670 79 LINVY---LEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKNVQD 152 (155)
Q Consensus 79 ~i~I~---c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~~~~ 152 (155)
.|+|. .+.. +|.+.+|+++|...|++|-....+- .++++.+... .....+.++.+|.+-+.++..
T Consensus 3 ~ItI~~~~~~~~-~g~~~~IF~~La~~~I~VDmI~~s~-~~iSftv~~~-------d~~~~~~~~~~l~~~l~~~~~ 70 (75)
T cd04932 3 LVTLKSPNMLHA-QGFLAKVFGILAKHNISVDLITTSE-ISVALTLDNT-------GSTSDQLLTQALLKELSQICD 70 (75)
T ss_pred EEEEecCCCCCC-cCHHHHHHHHHHHcCCcEEEEeecC-CEEEEEEecc-------ccchhHHHHHHHHHHHHhccE
Confidence 45553 3456 8999999999999999998875322 3455543221 112235566677777766544
No 93
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=84.68 E-value=5.1 Score=25.52 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 89 SGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 89 ~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
||.|.+|+..|..-|+++.+-+++..+
T Consensus 3 ~GvL~Ri~~vf~rRg~nI~sl~v~~~~ 29 (63)
T PF13710_consen 3 PGVLNRITGVFRRRGFNIESLSVGPTE 29 (63)
T ss_dssp TTHHHHHHHHHHTTT-EECEEEEEE-S
T ss_pred cHHHHHHHHHHhcCCeEEeeEEeeecC
Confidence 899999999999999999999999954
No 94
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.30 E-value=5.5 Score=26.31 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=29.0
Q ss_pred EEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 82 VYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 82 I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
+..+++ ||.|.++|..|+..|+++.+....+..
T Consensus 5 ~~l~~~-~g~L~~iL~~f~~~~inl~~IeSRP~~ 37 (74)
T cd04929 5 FSLKNE-VGGLAKALKLFQELGINVVHIESRKSK 37 (74)
T ss_pred EEcCCC-CcHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 344778 999999999999999999999988864
No 95
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=84.14 E-value=8.9 Score=31.96 Aligned_cols=68 Identities=12% Similarity=0.233 Sum_probs=49.8
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--C-eEEEEEecccccCCCCCCCHHHHHHHHHHHHH
Q 031670 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD--R-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIK 148 (155)
Q Consensus 76 ~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~--~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~ 148 (155)
..+.++++|+.+ +|+...|-.-|-+.|..+++++--+.. | |-+.+..... +...+.+.+.+.+-....
T Consensus 6 ~~~~LtvsCpd~-~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~----~~~~~~~~l~~~f~~~a~ 76 (287)
T COG0788 6 DTFILTVSCPDQ-PGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGE----GGPLDREALRAAFAPLAE 76 (287)
T ss_pred cceEEEEecCCC-CCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecC----CCcccHHHHHHHHHHHHH
Confidence 358899999999 999999999999999999998866432 2 5554433222 333777777777766444
No 96
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=83.70 E-value=7.8 Score=23.71 Aligned_cols=34 Identities=6% Similarity=0.200 Sum_probs=25.9
Q ss_pred EEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 031670 79 LINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSC 113 (155)
Q Consensus 79 ~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~is~ 113 (155)
.|.+.+. .. +|.+.+++++|.+.|+.|.-.+-++
T Consensus 3 ~isvvg~~~~~~-~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGT-PGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCC-ccHHHHHHHHHHHCCCCEEEEEecC
Confidence 3555553 45 8899999999999999997765444
No 97
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=83.46 E-value=9.5 Score=29.53 Aligned_cols=66 Identities=15% Similarity=0.265 Sum_probs=46.5
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEe--eCCeE-EEEEecccccCCCCCCCHHHHHHHHHHHHHhh
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC--SDRFQ-LEAVGGDHIEGHADGIDAQVVKEAVLQAIKNV 150 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~--~~~~~-l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~~ 150 (155)
..+.+..+++ ||+|.+|...|...|+++.+.++.+ ..+.+ +.+. +.. +.. ..+.+...|.+.+..+
T Consensus 3 ~~isvlv~n~-PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIv-v~~----~~~-~ieqL~kQL~KLidVl 71 (174)
T CHL00100 3 HTLSVLVEDE-SGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMV-VPG----DDR-TIEQLTKQLYKLVNIL 71 (174)
T ss_pred EEEEEEEeCc-CCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEE-EEC----CHH-HHHHHHHHHHHHhHhh
Confidence 3578889999 9999999999999999999999877 33433 2222 221 111 2677777777766544
No 98
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=83.37 E-value=0.61 Score=35.60 Aligned_cols=44 Identities=27% Similarity=0.350 Sum_probs=33.6
Q ss_pred chhhhHHHHHHHhHHHhhcCCC---CCCCcccchHHHHHHHHHHHHH
Q 031670 2 SSREQNKAALYEKLMLLRDVTN---STSMNKTSIVVDASKYIEELKQ 45 (155)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~p---~~k~DKaSIl~dAI~YIk~Lq~ 45 (155)
+.||+|=.-||+-|.+||-+.| +.|..|.--|.-|-.||--|=.
T Consensus 84 vrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 84 VRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhh
Confidence 4689999999999999999965 5555555556678778776643
No 99
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.17 E-value=8 Score=24.54 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=27.6
Q ss_pred EEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 81 NVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 81 ~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
+|.-+.+ ||.|.++++.|.+ |.+|...+-...+
T Consensus 2 ~v~ipdk-PG~l~~~~~~i~~-~~nI~~~~~~~~~ 34 (68)
T cd04885 2 AVTFPER-PGALKKFLELLGP-PRNITEFHYRNQG 34 (68)
T ss_pred EEECCCC-CCHHHHHHHHhCC-CCcEEEEEEEcCC
Confidence 5667889 9999999999999 9999887766543
No 100
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=81.81 E-value=12 Score=38.12 Aligned_cols=71 Identities=25% Similarity=0.340 Sum_probs=54.8
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee---CC--eEEEEEecccccCCCCCCCHHHHHHHHHHHHHhh
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS---DR--FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKNV 150 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~---~~--~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~~ 150 (155)
.+.++|-.... +..|++++-.|+++||.|+...-..+ ++ +-++.+..... ++...+..++++.+..++.+.
T Consensus 489 ~~~lkiy~~~~-~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~--~~~~~~~~~~~~~~~~a~~~v 564 (1528)
T PF05088_consen 489 RLRLKIYHPGE-PLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYP--DGDALDLDDIRERFEEAFEAV 564 (1528)
T ss_pred eEEEEEEcCCC-CcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecC--CCccccHHHHHHHHHHHHHHH
Confidence 48999999888 99999999999999999999764443 22 55555555443 345578889999998888754
No 101
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=81.13 E-value=9.2 Score=22.70 Aligned_cols=34 Identities=15% Similarity=0.346 Sum_probs=26.7
Q ss_pred EEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 031670 79 LINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSC 113 (155)
Q Consensus 79 ~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~is~ 113 (155)
.|+|.+. .. +|.+.+++++|.+.++.+.....+.
T Consensus 2 ~i~i~g~~~~~~-~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGT-PGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCC-ccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 4666554 45 7899999999999999998876544
No 102
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=80.90 E-value=2.8 Score=26.14 Aligned_cols=37 Identities=8% Similarity=0.132 Sum_probs=29.4
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCe
Q 031670 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRF 117 (155)
Q Consensus 80 i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~ 117 (155)
+-+.+..+ ||++.+++..|.+.|+++...+....++.
T Consensus 2 ~~~~~~d~-~g~l~~i~~~l~~~~~nI~~~~~~~~~~~ 38 (69)
T cd04901 2 ILHIHKNV-PGVLGQINTILAEHNINIAAQYLQTRGEI 38 (69)
T ss_pred EEEEecCC-CcHHHHHHHHHHHcCCCHHHHhccCCCCE
Confidence 34577889 99999999999999999977765544443
No 103
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.28 E-value=8.8 Score=27.59 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=31.5
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
..+-+..+++ ||.|.++|..|...|+++.+...-+..
T Consensus 42 tSlifsl~~~-pGsL~~iL~~Fa~~gINLt~IESRP~~ 78 (115)
T cd04930 42 ATLLFSLKEG-FSSLSRILKVFETFEAKIHHLESRPSR 78 (115)
T ss_pred EEEEEEeCCC-CcHHHHHHHHHHHCCCCEEEEECCcCC
Confidence 4455555888 999999999999999999999988873
No 104
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=79.33 E-value=21 Score=27.85 Aligned_cols=66 Identities=11% Similarity=0.191 Sum_probs=51.0
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC----C---eEEEEEecccccCCCCCCCHHHHHHHHHHHHHh
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD----R---FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKN 149 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~----~---~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~ 149 (155)
+.|.+.-.++ ||++..+-..|-+.|+++.+-+..+.+ + |.+.+.+.- ....+.++++.+|...-..
T Consensus 96 ~~v~v~G~Dr-PGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~l-----P~~~~~~~L~~~l~~l~~e 168 (190)
T PRK11589 96 VWVQVEVADS-PHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHS-----PASQDAANIEQAFKALCTE 168 (190)
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEc-----CCCCCHHHHHHHHHHHHHH
Confidence 7899999999 999999999999999999988877764 2 666654432 2345688888887765444
No 105
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=79.23 E-value=13 Score=23.21 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=19.7
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEE
Q 031670 86 KNCSGLLVSVLEAFEDLGLEVLD 108 (155)
Q Consensus 86 ~~~~g~l~~il~aLe~l~L~V~~ 108 (155)
.. +|.+.+++.+|...|++|..
T Consensus 13 ~~-~gi~~~if~aL~~~~I~v~~ 34 (64)
T cd04937 13 GV-PGVMAKIVGALSKEGIEILQ 34 (64)
T ss_pred CC-cCHHHHHHHHHHHCCCCEEE
Confidence 45 89999999999999999974
No 106
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=76.66 E-value=22 Score=33.62 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=33.4
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~ 114 (155)
+.|.|.+..+ +|+|.+|..+|.+.++++.++++.+.
T Consensus 667 v~I~I~~~Dr-~GlL~dIt~~is~~~~nI~~v~~~~~ 702 (743)
T PRK10872 667 LVVRVTANDR-SGLLRDITTILANEKVNVLGVASRSD 702 (743)
T ss_pred EEEEEEEcCC-CCHHHHHHHHHHHCCCCeEEEEeEEc
Confidence 5789999999 99999999999999999999998775
No 107
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=76.37 E-value=23 Score=33.07 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=34.1
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
+.|.|.+.++ +|+|.+|+.+|-+.+.++.++++....
T Consensus 611 v~I~I~~~dr-~GlLadI~~~ia~~~~nI~~v~~~~~~ 647 (683)
T TIGR00691 611 VDINIEAVDR-KGVLSDLTTAISENDSNIVSISTKTYG 647 (683)
T ss_pred EEEEEEEecC-CCHHHHHHHHHHHCCCCeEEEEeEEcC
Confidence 5789999999 999999999999999999999988763
No 108
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=75.52 E-value=11 Score=24.65 Aligned_cols=46 Identities=22% Similarity=0.212 Sum_probs=33.0
Q ss_pred EEEEEeCCeEEEEEEeccCC-----CCHHHHHHHHHHhCCCeEEEEEEEee
Q 031670 69 VTVETLEKGFLINVYLEKNC-----SGLLVSVLEAFEDLGLEVLDARVSCS 114 (155)
Q Consensus 69 V~V~~~~~~~~i~I~c~~~~-----~g~l~~il~aLe~l~L~V~~a~is~~ 114 (155)
|.+...++.+.|.+.++... ..-+..+-++|...|+.+.+.+++..
T Consensus 29 v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 29 VKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp EEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred EEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 66666788899999997751 22466888999999999998887653
No 109
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.04 E-value=19 Score=22.56 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 89 SGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 89 ~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
+|.+.+++.+|.+.|++|.-.+-++++
T Consensus 14 ~~~~~~i~~aL~~~~I~v~~i~~g~s~ 40 (65)
T cd04918 14 SLILERAFHVLYTKGVNVQMISQGASK 40 (65)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 789999999999999999776665553
No 110
>PRK14626 hypothetical protein; Provisional
Probab=73.62 E-value=20 Score=25.70 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCc
Q 031670 33 VVDASKYIEELKQQVETLNQEIGTSE 58 (155)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~~ 58 (155)
+++-++-.+++|++.++++++++...
T Consensus 7 ~~~mmkqaq~mQ~km~~~qeeL~~~~ 32 (110)
T PRK14626 7 LAELMKQMQSIKENVEKAKEELKKEE 32 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE
Confidence 56677888999999999999887653
No 111
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=73.60 E-value=4.5 Score=30.95 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=30.3
Q ss_pred hhhHHHHHHHhHHHhhcCCC---CCCCcc---cchHHHHHHHHHHHHHHH
Q 031670 4 REQNKAALYEKLMLLRDVTN---STSMNK---TSIVVDASKYIEELKQQV 47 (155)
Q Consensus 4 ER~RR~kln~~~~~LRsl~p---~~k~DK---aSIl~dAI~YIk~Lq~~v 47 (155)
||.|-+++|+.|.-|+.|.| ..+|.+ ..|=.|-|....|||.+.
T Consensus 30 e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE~q~qr 79 (173)
T KOG4447|consen 30 ERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDELQKQR 79 (173)
T ss_pred HHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHHHHHHH
Confidence 67778999999999999955 333321 233446777777777743
No 112
>PRK14627 hypothetical protein; Provisional
Probab=73.49 E-value=19 Score=25.31 Aligned_cols=44 Identities=7% Similarity=0.203 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCeEEEEEeCCeEEEEEEeccC
Q 031670 34 VDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLEKN 87 (155)
Q Consensus 34 ~dAI~YIk~Lq~~v~~Le~e~~~~~~~~~~~~~p~V~V~~~~~~~~i~I~c~~~ 87 (155)
.+-.+..+++|+++++++.+++.. .|+.+..++.|.|++.|.+.
T Consensus 4 ~~~mkqaq~mQ~km~~~Q~el~~~----------~veg~sggG~VkV~~~G~~~ 47 (100)
T PRK14627 4 RQLMQMAQQMQRQMQKVQEELAAT----------IVEGTAGGGAITVKMNGHRE 47 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc----------EEEEEEcCCeEEEEEEcCcc
Confidence 455667788999999999988654 35555555556666665554
No 113
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=73.40 E-value=30 Score=32.45 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=34.1
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
+.|.|.+.++ +|+|.+|..+|-+.++++.++++.+.+
T Consensus 627 v~i~I~~~dr-~GlL~dI~~~i~~~~~nI~~v~~~~~~ 663 (702)
T PRK11092 627 AEIKVEMFNH-QGALANLTAAINTTGSNIQSLNTEEKD 663 (702)
T ss_pred EEEEEEEeCC-CCHHHHHHHHHHHCCCCeEEEEEEEcC
Confidence 5789999999 999999999999999999999987764
No 114
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=73.03 E-value=2 Score=35.14 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=37.1
Q ss_pred hhhhHHHHHHHhHHHhhcCCC----CCCCcccchHHHHHHHHHHHHHHH
Q 031670 3 SREQNKAALYEKLMLLRDVTN----STSMNKTSIVVDASKYIEELKQQV 47 (155)
Q Consensus 3 sER~RR~kln~~~~~LRsl~p----~~k~DKaSIl~dAI~YIk~Lq~~v 47 (155)
.||+|=-.||+-|..||.+.| ..|+.|.-.|.-|=+||..|++-.
T Consensus 79 RER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 79 RERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred hhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcccc
Confidence 477777899999999999955 677888888988999998887543
No 115
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=72.83 E-value=30 Score=24.31 Aligned_cols=39 Identities=10% Similarity=0.178 Sum_probs=34.6
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~ 116 (155)
...|.+..+.+ ||+|.+|...|..-|+++.+.++...+.
T Consensus 8 ~~tisvlv~N~-pGVL~RIaglFsRRgyNIeSLtvg~te~ 46 (96)
T PRK08178 8 NVILELTVRNH-PGVMSHVCGLFARRAFNVEGILCLPIQD 46 (96)
T ss_pred CEEEEEEEECC-cCHHHHHHHHHhcCCcCeeeEEEeecCC
Confidence 37789999999 9999999999999999999988887643
No 116
>PRK14623 hypothetical protein; Provisional
Probab=71.92 E-value=23 Score=25.27 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCc
Q 031670 33 VVDASKYIEELKQQVETLNQEIGTSE 58 (155)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~~ 58 (155)
+++-.+-.+++|++.++++.+++..+
T Consensus 3 ~~~~mkqaqkmQ~km~~~Qeel~~~~ 28 (106)
T PRK14623 3 MMGMMGKLKEAQQKVEATKKRLDTVL 28 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE
Confidence 45667788999999999999887653
No 117
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=71.75 E-value=22 Score=22.45 Aligned_cols=50 Identities=26% Similarity=0.330 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHHHHHH
Q 031670 89 SGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQAI 147 (155)
Q Consensus 89 ~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai 147 (155)
+|.+.+++++|.+.|++|...+.++.+ ..+-..+ +.. +.+..-++|++.+
T Consensus 15 ~gv~~ki~~~L~~~~I~v~~i~~~~s~-~~is~~V-~~~-------~~~~av~~Lh~~f 64 (66)
T cd04915 15 PGVLARGLAALAEAGIEPIAAHQSMRN-VDVQFVV-DRD-------DYDNAIKALHAAL 64 (66)
T ss_pred chHHHHHHHHHHHCCCCEEEEEecCCe-eEEEEEE-EHH-------HHHHHHHHHHHHH
Confidence 789999999999999999876665542 2222222 221 4555666666654
No 118
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.74 E-value=21 Score=21.68 Aligned_cols=59 Identities=19% Similarity=0.169 Sum_probs=36.7
Q ss_pred EEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEecccccCCCCCCCHHHHHHHHHHHHH
Q 031670 79 LINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSCS-DRFQLEAVGGDHIEGHADGIDAQVVKEAVLQAIK 148 (155)
Q Consensus 79 ~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~is~~-~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~ 148 (155)
+|.+.+. .. +|.+.+++.+|.+.|+++.-.+.+.. .++++- ++.. +.+...+.|++.+-
T Consensus 3 lisivg~~~~~~-~~~~~~i~~~L~~~~i~v~~i~~~~s~~~isf~---v~~~-------d~~~~~~~lh~~~~ 65 (66)
T cd04916 3 LIMVVGEGMKNT-VGVSARATAALAKAGINIRMINQGSSEISIMIG---VHNE-------DADKAVKAIYEEFF 65 (66)
T ss_pred EEEEEcCCCCCC-ccHHHHHHHHHHHCCCCEEEEEecCcccEEEEE---EeHH-------HHHHHHHHHHHHHh
Confidence 3555553 45 88999999999999999976654332 223322 2221 34556677777653
No 119
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=70.51 E-value=4.5 Score=22.68 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=12.7
Q ss_pred hhHHHHHHHhHHHhhc
Q 031670 5 EQNKAALYEKLMLLRD 20 (155)
Q Consensus 5 R~RR~kln~~~~~LRs 20 (155)
|+||+.|..+|..||+
T Consensus 14 rrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 14 RRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7889999999999985
No 120
>PRK14625 hypothetical protein; Provisional
Probab=70.34 E-value=23 Score=25.36 Aligned_cols=26 Identities=8% Similarity=0.169 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCc
Q 031670 33 VVDASKYIEELKQQVETLNQEIGTSE 58 (155)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~~ 58 (155)
+.+..+-.+++|++.++++.+++..+
T Consensus 4 m~~mmkqaq~mQ~km~~~Q~el~~~~ 29 (109)
T PRK14625 4 LGGLMKQAQAMQQKLADAQARLAETT 29 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE
Confidence 45677788899999999999887653
No 121
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=69.65 E-value=40 Score=24.95 Aligned_cols=40 Identities=25% Similarity=0.492 Sum_probs=34.3
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEE
Q 031670 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQL 119 (155)
Q Consensus 79 ~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l 119 (155)
.|.|..+.+ ||-|..+.++|.+.|+++-.-++.-.++|-+
T Consensus 5 QISvFlENk-~GRL~~~~~~L~eagINiRA~tiAdt~dFGI 44 (142)
T COG4747 5 QISVFLENK-PGRLASVANKLKEAGINIRAFTIADTGDFGI 44 (142)
T ss_pred EEEEEecCC-cchHHHHHHHHHHcCCceEEEEeccccCcce
Confidence 478889999 9999999999999999999888877665443
No 122
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.52 E-value=23 Score=21.65 Aligned_cols=27 Identities=7% Similarity=0.111 Sum_probs=22.3
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 031670 86 KNCSGLLVSVLEAFEDLGLEVLDARVSC 113 (155)
Q Consensus 86 ~~~~g~l~~il~aLe~l~L~V~~a~is~ 113 (155)
.. +|.+.+++++|.+.|++|.-..-++
T Consensus 13 ~~-~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 13 NM-IGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred CC-cCHHHHHHHHHHHCCCCEEEEEecC
Confidence 35 7899999999999999997665544
No 123
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=69.31 E-value=21 Score=21.71 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=24.8
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEE
Q 031670 86 KNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLE 120 (155)
Q Consensus 86 ~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~ 120 (155)
.. +|...+++++|+..|++|.....+. +++++.
T Consensus 12 ~~-~~~~~~if~~l~~~~i~v~~i~t~~-~~is~~ 44 (62)
T cd04890 12 GE-VGFLRKIFEILEKHGISVDLIPTSE-NSVTLY 44 (62)
T ss_pred cc-cCHHHHHHHHHHHcCCeEEEEecCC-CEEEEE
Confidence 45 7899999999999999999875322 334443
No 124
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=69.31 E-value=28 Score=24.43 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccC
Q 031670 33 VVDASKYIEELKQQVETLNQEIGTS 57 (155)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~ 57 (155)
+++.++-.+++|+++++++.+++..
T Consensus 7 ~~~m~kqaq~mQ~k~~~~q~eL~~~ 31 (102)
T TIGR00103 7 LGELMKQAQQMQEKMKKLQEEIAQF 31 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5677888899999999999988665
No 125
>PRK14622 hypothetical protein; Provisional
Probab=68.98 E-value=25 Score=24.81 Aligned_cols=45 Identities=7% Similarity=0.036 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCeEEEEEeCCeEEEEEEeccC
Q 031670 33 VVDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLEKN 87 (155)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~~~~~~~~~~p~V~V~~~~~~~~i~I~c~~~ 87 (155)
+.+-.+..+++|++.+++++++.... |+.+..++-|.|++.|.+.
T Consensus 3 ~~~lmkqaq~mQ~~m~~~q~el~~~~----------v~g~sggG~VkV~~nG~~~ 47 (103)
T PRK14622 3 IQYLMRQAKKLEKAMADAKEKLAEIA----------VEAESGGGLVKVAMNGKCE 47 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE----------EEEEECCceEEEEEEcCce
Confidence 45667778889999999988876542 4444444445565555554
No 126
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=66.78 E-value=6.5 Score=35.43 Aligned_cols=48 Identities=23% Similarity=0.182 Sum_probs=38.7
Q ss_pred hhhhHHHHHHHhHHHhhcC--CC--CCC-CcccchHHHHHHHHHHHHHHHHHH
Q 031670 3 SREQNKAALYEKLMLLRDV--TN--STS-MNKTSIVVDASKYIEELKQQVETL 50 (155)
Q Consensus 3 sER~RR~kln~~~~~LRsl--~p--~~k-~DKaSIl~dAI~YIk~Lq~~v~~L 50 (155)
.||=|=+.||+-|..|=.+ .. +.| -.|.-||--|+.-|-.|++||++-
T Consensus 533 RERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 533 RERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred hhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 4666668899999999776 33 333 468999999999999999999874
No 127
>PRK14621 hypothetical protein; Provisional
Probab=66.20 E-value=30 Score=24.83 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCeEEEEEeCCeEEEEEEeccC
Q 031670 33 VVDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLEKN 87 (155)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~~~~~~~~~~p~V~V~~~~~~~~i~I~c~~~ 87 (155)
+.+..+-.+++|++.++++++++..+ |+.+..++-|.|++.|.+.
T Consensus 6 m~~mmkqaq~mQ~km~~~Q~eL~~~~----------v~g~sGgG~VkV~~~G~~~ 50 (111)
T PRK14621 6 LGDMMKQIQQAGEKMQDVQKQLEKLV----------AHGEAGGGMVKASVNGKQK 50 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccE----------EEEEECCceEEEEEEcCce
Confidence 55677888899999999998886542 4444444445566665554
No 128
>PRK11899 prephenate dehydratase; Provisional
Probab=65.66 E-value=51 Score=27.31 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=31.4
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
..+-+..+++ ||.|.++|..|...|++.....+-+..
T Consensus 195 tsl~~~~~~~-pGaL~~vL~~Fa~~gINLtkIeSRP~~ 231 (279)
T PRK11899 195 TTFVFRVRNI-PAALYKALGGFATNGVNMTKLESYMVG 231 (279)
T ss_pred EEEEEEeCCC-CChHHHHHHHHHHcCCCeeeEEeeecC
Confidence 4444555788 999999999999999999999988874
No 129
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.35 E-value=38 Score=22.55 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=25.6
Q ss_pred EEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEE
Q 031670 79 LINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARV 111 (155)
Q Consensus 79 ~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~i 111 (155)
+|+|... .. +|.+.+|+++|+..|++|-....
T Consensus 3 ~i~i~~~~~~~~-~g~~a~IF~~La~~~InVDmI~q 37 (78)
T cd04933 3 MLDITSTRMLGQ-YGFLAKVFSIFETLGISVDVVAT 37 (78)
T ss_pred EEEEEcCCCCCc-cCHHHHHHHHHHHcCCcEEEEEe
Confidence 4555553 45 89999999999999999988753
No 130
>PRK00153 hypothetical protein; Validated
Probab=64.97 E-value=38 Score=23.65 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCeEEEEEeCCe
Q 031670 33 VVDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKG 77 (155)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~~~~~~~~~~p~V~V~~~~~~ 77 (155)
+++-++-.+++|++++++++++.....+.. ...--|+|.+.|++
T Consensus 5 ~~~m~~qaq~~q~~~~~~q~~l~~~~~~~~-s~~G~V~V~v~G~~ 48 (104)
T PRK00153 5 MQNLMKQAQQMQEKMQKMQEELAQMEVEGE-AGGGLVKVTMTGKK 48 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEEE-ECCCeEEEEEecCc
Confidence 556778889999999999998876532110 00112666665554
No 131
>PRK14629 hypothetical protein; Provisional
Probab=64.89 E-value=36 Score=23.93 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccC
Q 031670 35 DASKYIEELKQQVETLNQEIGTS 57 (155)
Q Consensus 35 dAI~YIk~Lq~~v~~Le~e~~~~ 57 (155)
+..+-.+++|++.++++++++..
T Consensus 7 ~~mkqaq~mQ~km~~~Q~eL~~~ 29 (99)
T PRK14629 7 DFLKNMSSFKDNIDNIKKEISQI 29 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677789999999999988654
No 132
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=62.80 E-value=47 Score=22.75 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=44.7
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC---eEEEEEecccccCCCCCCCHHHHHHHHHH
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR---FQLEAVGGDHIEGHADGIDAQVVKEAVLQ 145 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~---~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ 145 (155)
+.+.+....+ |+.|.++|...+.-||-|...+.++..+ ..++.++. ...+++-+...|.+
T Consensus 4 yqldl~ar~~-pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~-------s~R~~~lL~~QLeK 66 (86)
T COG3978 4 YQLDLSARFN-PETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVD-------SDRSVDLLTSQLEK 66 (86)
T ss_pred EEEeeeccCC-hHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEc-------CCCChHHHHHHHHH
Confidence 5677888889 9999999999999999999999999632 55555442 22355555555544
No 133
>PRK14624 hypothetical protein; Provisional
Probab=62.80 E-value=39 Score=24.45 Aligned_cols=45 Identities=11% Similarity=0.162 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCeEEEEEeCCeEEEEEEeccC
Q 031670 33 VVDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLEKN 87 (155)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~~~~~~~~~~p~V~V~~~~~~~~i~I~c~~~ 87 (155)
+.+..+-.+++|++.++++++++... |+.+..++-|.|++.|.+.
T Consensus 8 m~~~mkqAq~mQ~km~~~QeeL~~~~----------v~g~sGgG~VkV~~nG~~~ 52 (115)
T PRK14624 8 MSEALSNMGNIREKMEEVKKRIASIR----------VVGDAGAGMVTVTATGEGQ 52 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE----------EEEEECCcEEEEEEEcCcc
Confidence 67778888899999999998886653 4444444445555555444
No 134
>PRK03762 hypothetical protein; Provisional
Probab=62.33 E-value=46 Score=23.54 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCeEEEEEeCCeEEEEEEeccC
Q 031670 33 VVDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLEKN 87 (155)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~~~~~~~~~~p~V~V~~~~~~~~i~I~c~~~ 87 (155)
++.-.+-.+++|+++++++++++..+ |+.+..++-+.|.+.|.+.
T Consensus 7 ~~~m~kqaqkmQ~km~~~Q~el~~~~----------v~g~sggGlVkV~~nG~~~ 51 (103)
T PRK03762 7 FSKLGEMLEQMQKKAKQLEEENANKE----------FTAKSGGGLVSVSANGKGE 51 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE----------EEEEEcCceEEEEEEcCce
Confidence 34455667889999999998886543 3444444445555554444
No 135
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=62.27 E-value=9.9 Score=31.41 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=35.9
Q ss_pred hhhhHHHHHHHhHHHhhcCCC----CCCCcccchHHHHHHHHHHHHHHH
Q 031670 3 SREQNKAALYEKLMLLRDVTN----STSMNKTSIVVDASKYIEELKQQV 47 (155)
Q Consensus 3 sER~RR~kln~~~~~LRsl~p----~~k~DKaSIl~dAI~YIk~Lq~~v 47 (155)
.||+|=..||.-|..||-++| .+|..|.--|.=|-.||--|=..+
T Consensus 181 rErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 181 RERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred HHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 467777899999999999976 356678888888999998776554
No 136
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=60.13 E-value=21 Score=22.56 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=27.0
Q ss_pred EEEEEEec----cCCCCHHHHHHHHHHhCCCeEEEEE
Q 031670 78 FLINVYLE----KNCSGLLVSVLEAFEDLGLEVLDAR 110 (155)
Q Consensus 78 ~~i~I~c~----~~~~g~l~~il~aLe~l~L~V~~a~ 110 (155)
..|+|.++ .. +|.+.++..+|.+-|++|...+
T Consensus 7 ~~i~v~g~g~~~~~-~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 7 AKISVVGPGLRFDV-PGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEECGTTTS-HHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEEccccCCCc-ccHHHHHHHHHHHCCCCEEEEE
Confidence 56888887 35 8999999999999999998877
No 137
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.04 E-value=36 Score=20.21 Aligned_cols=32 Identities=9% Similarity=0.276 Sum_probs=24.6
Q ss_pred EEEEEe---ccCCCCHHHHHHHHHHhCCCeEEEEEE
Q 031670 79 LINVYL---EKNCSGLLVSVLEAFEDLGLEVLDARV 111 (155)
Q Consensus 79 ~i~I~c---~~~~~g~l~~il~aLe~l~L~V~~a~i 111 (155)
.|+|.+ ... +|.+.+++.+|.+.++.+.-.+.
T Consensus 2 ~v~v~g~~~~~~-~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 2 KVSIVGAGMRSH-PGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred EEEEECCCCCCC-ccHHHHHHHHHHHCCCCEEEEEc
Confidence 345554 244 78999999999999999987763
No 138
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.99 E-value=41 Score=20.26 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=35.5
Q ss_pred EEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEecccccCCCCCCCHHHHHHHHHHHH
Q 031670 79 LINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSCSD-RFQLEAVGGDHIEGHADGIDAQVVKEAVLQAI 147 (155)
Q Consensus 79 ~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~is~~~-~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai 147 (155)
.|.|.+. .. +|.+.+++.+|.+.|+.+.-.+-+..+ ++++- +... +.++..+.|++.+
T Consensus 3 ~isivg~~~~~~-~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~---i~~~-------~~~~~~~~Lh~~~ 64 (66)
T cd04924 3 VVAVVGSGMRGT-PGVAGRVFGALGKAGINVIMISQGSSEYNISFV---VAED-------DGWAAVKAVHDEF 64 (66)
T ss_pred EEEEECCCCCCC-ccHHHHHHHHHHHCCCCEEEEEecCccceEEEE---EeHH-------HHHHHHHHHHHHh
Confidence 3455553 45 789999999999999999766544322 23322 2221 3455666666655
No 139
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=56.93 E-value=35 Score=19.47 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHhCCCeEEEEEEE
Q 031670 89 SGLLVSVLEAFEDLGLEVLDARVS 112 (155)
Q Consensus 89 ~g~l~~il~aLe~l~L~V~~a~is 112 (155)
+|.+.+++++|.+.++.+.....+
T Consensus 14 ~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 14 PGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred CCHHHHHHHHHHHCCCcEEEEEcC
Confidence 789999999999999999776544
No 140
>PRK00587 hypothetical protein; Provisional
Probab=56.68 E-value=56 Score=22.97 Aligned_cols=26 Identities=12% Similarity=0.281 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCc
Q 031670 33 VVDASKYIEELKQQVETLNQEIGTSE 58 (155)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~~ 58 (155)
+++-.+-.+++|++.++++.+++..+
T Consensus 3 ~~~lmkqaqkmQ~km~~~QeeL~~~~ 28 (99)
T PRK00587 3 FQKLAQQLKKMQNTMEKKQKEFEEKE 28 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE
Confidence 34566778889999999999887654
No 141
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.18 E-value=47 Score=20.67 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=18.8
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEE
Q 031670 86 KNCSGLLVSVLEAFEDLGLEVLDA 109 (155)
Q Consensus 86 ~~~~g~l~~il~aLe~l~L~V~~a 109 (155)
.. +|.+.+++++|.+.++.+...
T Consensus 12 ~~-~gv~~~~~~~L~~~~i~~i~~ 34 (63)
T cd04920 12 SL-LHKLGPALEVFGKKPVHLVSQ 34 (63)
T ss_pred cC-ccHHHHHHHHHhcCCceEEEE
Confidence 45 899999999999988777543
No 142
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=55.10 E-value=50 Score=21.22 Aligned_cols=31 Identities=32% Similarity=0.398 Sum_probs=24.4
Q ss_pred EEEEEe---ccCCCCHHHHHHHHHHhCCCeEEEEE
Q 031670 79 LINVYL---EKNCSGLLVSVLEAFEDLGLEVLDAR 110 (155)
Q Consensus 79 ~i~I~c---~~~~~g~l~~il~aLe~l~L~V~~a~ 110 (155)
+|.|.+ ... +|.+.+++++|...|++|....
T Consensus 3 ~Vsi~g~~l~~~-~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 3 LLNIKSNRMLGA-HGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred EEEEEcCCCCCC-ccHHHHHHHHHHHcCCeEEEEE
Confidence 455543 345 8999999999999999997764
No 143
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=54.03 E-value=31 Score=25.96 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=32.9
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCC
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC-SDR 116 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~-~~~ 116 (155)
.+.+.+.-+++ .|.|+++|+++...+++|++.+=+- .+|
T Consensus 72 i~TL~l~ledr-~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g 111 (150)
T COG4492 72 IITLSLSLEDR-VGILSDVLDVIAREEINVLTIHQTIPLQG 111 (150)
T ss_pred EEEEEEEEhhh-hhhHHHHHHHHHHhCCcEEEEecccccCc
Confidence 48899999999 9999999999999999998876433 444
No 144
>PRK06382 threonine dehydratase; Provisional
Probab=53.31 E-value=72 Score=27.52 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=31.5
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEE
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVS 112 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is 112 (155)
-+.+.|.-+++ ||.|.++++.|.+.|.+|++....
T Consensus 330 ~~rl~v~v~D~-pG~L~~l~~ii~~~~~nI~~v~~~ 364 (406)
T PRK06382 330 LVRIECNIPDR-PGNLYRIANAIASNGGNIYHAEVD 364 (406)
T ss_pred EEEEEEEcCCC-CCHHHHHHHHHhcCCCcEEEEEEe
Confidence 37888899999 999999999999999999987764
No 145
>PRK08198 threonine dehydratase; Provisional
Probab=52.06 E-value=1.1e+02 Score=26.28 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=32.6
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC 113 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~ 113 (155)
.+.+.|.-+++ ||.|.++++.+-+.|.+|.+.+...
T Consensus 327 ~~~l~v~l~D~-PG~L~~ll~~i~~~g~NI~~i~~~~ 362 (404)
T PRK08198 327 YLKLRVRLPDR-PGQLAKLLSIIAELGANVIDVDHDR 362 (404)
T ss_pred EEEEEEEeCCC-CCHHHHHHHHHhhCCCceEEEEEEE
Confidence 47899999999 9999999999999999999887764
No 146
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.86 E-value=51 Score=21.46 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.3
Q ss_pred ccCCCCHHHHHHHHHHhCCCeEEEEEE
Q 031670 85 EKNCSGLLVSVLEAFEDLGLEVLDARV 111 (155)
Q Consensus 85 ~~~~~g~l~~il~aLe~l~L~V~~a~i 111 (155)
+.. +|.+.+++++|...|++|.....
T Consensus 12 ~~~-~g~~~~IF~~La~~~I~vDmI~~ 37 (75)
T cd04935 12 WQQ-VGFLADVFAPFKKHGVSVDLVST 37 (75)
T ss_pred CCc-cCHHHHHHHHHHHcCCcEEEEEe
Confidence 345 89999999999999999988753
No 147
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=48.35 E-value=1.7e+02 Score=24.95 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=31.1
Q ss_pred EEEeCCeEEEEEEe---ccCCCCHHHHHHHHHHhCCCeEEEEEEE
Q 031670 71 VETLEKGFLINVYL---EKNCSGLLVSVLEAFEDLGLEVLDARVS 112 (155)
Q Consensus 71 V~~~~~~~~i~I~c---~~~~~g~l~~il~aLe~l~L~V~~a~is 112 (155)
+....+-..|.|.. ... +|.+.+++.+|.+.|+.+...+.+
T Consensus 254 I~~~~~va~vsv~g~~~~~~-~g~~~~if~~L~~~~I~i~~i~~~ 297 (401)
T TIGR00656 254 IALRKNVTRVTVHGLGMLGK-RGFLARIFGALAERNINVDLISQT 297 (401)
T ss_pred EEEECCEEEEEEecCCCCCC-ccHHHHHHHHHHHcCCcEEEEEcC
Confidence 33344557788873 556 899999999999999999876543
No 148
>PRK08210 aspartate kinase I; Reviewed
Probab=48.06 E-value=1.5e+02 Score=25.45 Aligned_cols=65 Identities=14% Similarity=0.204 Sum_probs=40.9
Q ss_pred EEEeCCeEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHHHHHH
Q 031670 71 VETLEKGFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQAI 147 (155)
Q Consensus 71 V~~~~~~~~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai 147 (155)
+...++-.+|.|... .. +|.+.+++++|.+.|++|.. +++ .+..+...+... +.+...++|++++
T Consensus 333 v~~~~~~a~isvvG~~~~~~-~g~~~~i~~aL~~~~I~i~~--~~~-s~~~is~vv~~~--------~~~~a~~~Lh~~f 400 (403)
T PRK08210 333 PSVRENCAKVSIVGAGMAGV-PGVMAKIVTALSEEGIEILQ--SAD-SHTTIWVLVKEE--------DMEKAVNALHDAF 400 (403)
T ss_pred EEEeCCcEEEEEEcCCcCCC-ccHHHHHHHHHHhCCCCEEE--Eec-CCCEEEEEEcHH--------HHHHHHHHHHHHh
Confidence 344444566666654 45 89999999999999999985 232 233333222221 3566677777765
No 149
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=47.94 E-value=70 Score=20.26 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=25.4
Q ss_pred EEEEEe---ccCCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 031670 79 LINVYL---EKNCSGLLVSVLEAFEDLGLEVLDARVSC 113 (155)
Q Consensus 79 ~i~I~c---~~~~~g~l~~il~aLe~l~L~V~~a~is~ 113 (155)
.|+|.. ... +|.+.+++++|.+.++.+.-.+.++
T Consensus 3 ~I~vvg~~~~~~-~~~~~~i~~~L~~~~I~v~~i~~~~ 39 (80)
T cd04921 3 LINIEGTGMVGV-PGIAARIFSALARAGINVILISQAS 39 (80)
T ss_pred EEEEEcCCCCCC-ccHHHHHHHHHHHCCCcEEEEEecC
Confidence 455533 345 7899999999999999997766543
No 150
>PRK07431 aspartate kinase; Provisional
Probab=47.40 E-value=1.5e+02 Score=26.87 Aligned_cols=65 Identities=12% Similarity=0.170 Sum_probs=43.3
Q ss_pred EEEeCCeEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHHHHHH
Q 031670 71 VETLEKGFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQAI 147 (155)
Q Consensus 71 V~~~~~~~~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai 147 (155)
++...+-..|.|.+. .. +|++.+++.+|.+.+++|...+ + .+..+-..+-+. +.+...++||+.+
T Consensus 342 i~~~~~~a~IsvvG~gm~~~-~gi~~ki~~aL~~~~I~i~~i~--s-Se~~Is~vv~~~--------d~~~av~~Lh~~f 409 (587)
T PRK07431 342 VLVETNVAKLSISGAGMMGR-PGIAAKMFDTLAEAGINIRMIS--T-SEVKVSCVIDAE--------DGDKALRAVCEAF 409 (587)
T ss_pred EEEeCCeEEEEEECCCcccC-ccHHHHHHHHHHHCCCcEEEEE--c-CCCEEEEEEcHH--------HHHHHHHHHHHHh
Confidence 444455567777765 45 8999999999999999998766 2 233332222221 4666777777776
No 151
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=47.40 E-value=35 Score=31.99 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=47.6
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHHHHHHH
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQAIK 148 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~ 148 (155)
+..++|....+ +|+|..++.+|. ++.-+.++|.|.-.+..+..... .+-..+..++..++.
T Consensus 631 ~~~~e~r~~dr-~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~~------~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 631 GNILEVRTEDR-RGALGALLGVLP----DLLWITASTPGATMIVQAALKPG------FDRATVERDVTRVLA 691 (693)
T ss_pred CcEEEEEeCcc-ccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecCc------ccHHHHHHHHHHHHh
Confidence 36789999999 999999999999 89999999999977777766431 244556666666553
No 152
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=47.12 E-value=1.3e+02 Score=25.15 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=31.6
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~ 116 (155)
..+-+.-+++ ||.|.++|..|...|++.....+-+..+
T Consensus 195 Tsl~f~~~n~-PGaL~~~L~~Fa~~gINlTkIESRP~k~ 232 (279)
T COG0077 195 TSLIFSVPNK-PGALYKALGVFAKRGINLTKIESRPLKT 232 (279)
T ss_pred EEEEEEcCCC-CchHHHHHHHHHHcCcceeeEeecccCC
Confidence 4444555688 9999999999999999999999888753
No 153
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=46.32 E-value=71 Score=30.11 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=34.1
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~ 116 (155)
+.|.|.-.++ +|+|.+|+++|-+.+.+|.+++..+.++
T Consensus 628 ~~i~v~~~~r-~glL~~i~~~i~~~~~ni~~v~~~~~~~ 665 (701)
T COG0317 628 VDIEIRAYDR-SGLLRDVSQVLANEKINVLGVNTRSDKD 665 (701)
T ss_pred EEEEEEEccc-cchHHHHHHHHHhCCCceEEeeccccCC
Confidence 5678888999 9999999999999999999999888643
No 154
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=46.18 E-value=1.5e+02 Score=25.71 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=29.3
Q ss_pred EEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 031670 82 VYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (155)
Q Consensus 82 I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~ 116 (155)
+.-+++ ||.|.++|..|...|++.....+-+..+
T Consensus 302 ~~~~~~-pGaL~~~L~~Fa~~giNLtkIeSRP~~~ 335 (386)
T PRK10622 302 MATGQQ-AGALVEALLVLRNHNLIMTKLESRPIHG 335 (386)
T ss_pred EEcCCC-CcHHHHHHHHHHHcCCCeeEEEeeecCC
Confidence 344688 9999999999999999999999888653
No 155
>PRK09034 aspartate kinase; Reviewed
Probab=46.16 E-value=1.6e+02 Score=25.97 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=42.8
Q ss_pred EEEEeCCeEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHHHHH
Q 031670 70 TVETLEKGFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQA 146 (155)
Q Consensus 70 ~V~~~~~~~~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~a 146 (155)
.|....+-..|.|... .. +|.+.+++.+|.+.|++|.-.+-++.+ ..+...+ ... +.+...++||+.
T Consensus 378 ~I~~~~~va~VsivG~g~~~~-~gv~arif~aL~~~~InV~mIsq~~Se-~~Is~vV-~~~-------d~~~av~~LH~~ 447 (454)
T PRK09034 378 ELEIEHDLAIIMVVGEGMRQT-VGVAAKITKALAEANINIQMINQGSSE-ISIMFGV-KNE-------DAEKAVKAIYNA 447 (454)
T ss_pred eEEEeCCEEEEEEECCCCCCC-ccHHHHHHHHHHHCCCCEEEEEecCCc-ceEEEEE-cHH-------HHHHHHHHHHHH
Confidence 3444555566777542 45 899999999999999999876654433 2222222 221 344556667776
Q ss_pred HH
Q 031670 147 IK 148 (155)
Q Consensus 147 i~ 148 (155)
+-
T Consensus 448 f~ 449 (454)
T PRK09034 448 FF 449 (454)
T ss_pred Hh
Confidence 53
No 156
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=45.85 E-value=60 Score=27.50 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=31.3
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEE
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVS 112 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is 112 (155)
+.+.|.-+++ ||.|.++++.+.+.|.+|.+....
T Consensus 306 ~~l~v~l~D~-pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 306 VRIETVLPDR-PGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred EEEEEEeCCC-CCHHHHHHHHHhcCCCcEEEEEee
Confidence 6889999999 999999999999999999988665
No 157
>PRK11898 prephenate dehydratase; Provisional
Probab=45.08 E-value=1.7e+02 Score=24.08 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=30.6
Q ss_pred EEEEEEecc-CCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 78 FLINVYLEK-NCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 78 ~~i~I~c~~-~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
..+-+..++ + +|.|.++|..|...|+++.+....+..
T Consensus 197 tslif~l~~~~-pGsL~~~L~~F~~~~INLt~IeSRP~~ 234 (283)
T PRK11898 197 TSLVLTLPNNL-PGALYKALSEFAWRGINLTRIESRPTK 234 (283)
T ss_pred EEEEEEeCCCC-ccHHHHHHHHHHHCCCCeeeEecccCC
Confidence 445556544 6 999999999999999999999988864
No 158
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=44.99 E-value=26 Score=18.23 Aligned_cols=17 Identities=12% Similarity=0.534 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhhcc
Q 031670 40 IEELKQQVETLNQEIGT 56 (155)
Q Consensus 40 Ik~Lq~~v~~Le~e~~~ 56 (155)
|..|+.++.+|++++..
T Consensus 3 ~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788889999888754
No 159
>PRK14628 hypothetical protein; Provisional
Probab=44.78 E-value=1.1e+02 Score=22.17 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCeEEEEEeCCeEEEEEEeccC
Q 031670 33 VVDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYLEKN 87 (155)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~~~~~~~~~~p~V~V~~~~~~~~i~I~c~~~ 87 (155)
+..+-+--+++|++.++++++++..+ |+.+..++-|.|++.|.+.
T Consensus 21 m~q~~k~qq~mq~k~~elqe~l~~~~----------v~g~sggG~VkV~~nG~~e 65 (118)
T PRK14628 21 LKDFAKMQEELQKKIQELEESFSQIE----------VEASVGGGAVRIVATCDRR 65 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHceE----------EEEEecCceEEEEEEcCce
Confidence 44555566666667777776665432 3333334445555555444
No 160
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=43.39 E-value=1.8e+02 Score=23.55 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=35.9
Q ss_pred CeEEEEEEeccCCCC--HHHHHHHHHHhCCCeEEEEEEEeeC---CeEEEEEec
Q 031670 76 KGFLINVYLEKNCSG--LLVSVLEAFEDLGLEVLDARVSCSD---RFQLEAVGG 124 (155)
Q Consensus 76 ~~~~i~I~c~~~~~g--~l~~il~aLe~l~L~V~~a~is~~~---~~~l~~~~~ 124 (155)
..+.++|.|.+. ++ ....+++.|++.++.+.+.++...+ ...+.+...
T Consensus 141 ~~~~~~v~~~~~-~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~ 193 (225)
T PRK15385 141 KRYILKVTCNKE-DESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELV 193 (225)
T ss_pred eEEEEEEEEcCc-chhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEE
Confidence 357899999887 54 5788889999999999999987653 244444443
No 161
>PRK06291 aspartate kinase; Provisional
Probab=42.96 E-value=2.3e+02 Score=24.92 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=29.3
Q ss_pred CeEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 031670 76 KGFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSC 113 (155)
Q Consensus 76 ~~~~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~is~ 113 (155)
+-..|+|... .. +|.+.+++++|.+.|++|.-.+-++
T Consensus 320 ~valIsI~g~~m~~~-~g~~arvf~~L~~~gI~V~mIsq~s 359 (465)
T PRK06291 320 NVALINISGAGMVGV-PGTAARIFSALAEEGVNVIMISQGS 359 (465)
T ss_pred CEEEEEEeCCCCCCC-ccHHHHHHHHHHHCCCcEEEEEecC
Confidence 3467888775 35 8999999999999999998765443
No 162
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=42.71 E-value=69 Score=20.76 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=24.5
Q ss_pred EEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEE
Q 031670 80 INVYLE---KNCSGLLVSVLEAFEDLGLEVLDARV 111 (155)
Q Consensus 80 i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~i 111 (155)
|+|.+. .. +|.+.+++++|...|++|.....
T Consensus 4 I~i~~~~m~~~-~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 4 INIHSNKKSLS-HGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred EEEEcccCccc-cCHHHHHHHHHHHcCCcEEEEEe
Confidence 445553 34 78999999999999999988754
No 163
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=42.11 E-value=1.2e+02 Score=23.60 Aligned_cols=64 Identities=9% Similarity=0.182 Sum_probs=46.9
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee--CC-----eEEEEEecccccCCCCCCCHHHHHHHHHHH
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS--DR-----FQLEAVGGDHIEGHADGIDAQVVKEAVLQA 146 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~--~~-----~~l~~~~~~~~~~~~~~~~~~~vk~~l~~a 146 (155)
-+.+.+...++ ||++-++..-|..+|+++.+-+..+. .+ |++++... -...++...|.+.+...
T Consensus 92 ~v~v~v~a~Dr-pgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~-----lPa~~~i~~l~~~f~al 162 (176)
T COG2716 92 PVWVYVDANDR-PGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITAR-----LPANLSISALRDAFEAL 162 (176)
T ss_pred eEEEEEEecCC-ccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhcc-----CCCcCcHHHHHHHHHHH
Confidence 47889999999 99999999999999988876655553 22 66655442 14567778887776543
No 164
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.31 E-value=1.1e+02 Score=20.46 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEE
Q 031670 89 SGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEA 121 (155)
Q Consensus 89 ~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~ 121 (155)
-|.+.++|+.||..|+.+-+.- |-.+++++-+
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~P-SGID~~Siii 46 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMP-SGIDDISIII 46 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeec-CCCccEEEEE
Confidence 6899999999999999998854 3345566654
No 165
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=40.19 E-value=1.4e+02 Score=22.94 Aligned_cols=67 Identities=13% Similarity=0.215 Sum_probs=45.6
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC--eEEEEEecccccCCCCCCCHHHHHHHHHHHHHhhc
Q 031670 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR--FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKNVQ 151 (155)
Q Consensus 79 ~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~--~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~~~ 151 (155)
.+.+.-.+. ||.|.++...|-..|+++-+..+...+. .+--..++ . ++.-..+.+...|++.+..+.
T Consensus 6 ilsvlv~ne-~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv-~----g~~~~~EQi~kQL~kLidV~k 74 (163)
T COG0440 6 ILSLLVENE-PGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVV-S----GDEQVLEQIIKQLNKLIDVLK 74 (163)
T ss_pred EEEEEEECC-CCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEE-c----CCcchHHHHHHHHHhhcccee
Confidence 456667888 9999999999999999999988888653 22222222 1 222346667777766665443
No 166
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=40.18 E-value=20 Score=27.37 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=38.7
Q ss_pred HHHHHHHhHHHhhcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHhhhc
Q 031670 7 NKAALYEKLMLLRDVTNSTSMNKTSIVVDASKYIEELKQQVETLNQEIG 55 (155)
Q Consensus 7 RR~kln~~~~~LRsl~p~~k~DKaSIl~dAI~YIk~Lq~~v~~Le~e~~ 55 (155)
.+..+..-..++|.+.+...-|+++..+.=-.|++.+++++++++..+.
T Consensus 123 ~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~ 171 (174)
T COG1076 123 IKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYE 171 (174)
T ss_pred hhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777777655689999999999999999999999987553
No 167
>PRK14126 cell division protein ZapA; Provisional
Probab=40.06 E-value=74 Score=21.51 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=34.0
Q ss_pred HHHHHhHHHhhcCCCCCCCcccchHHH--HHHHHHHHHHHHHHHHhhhc
Q 031670 9 AALYEKLMLLRDVTNSTSMNKTSIVVD--ASKYIEELKQQVETLNQEIG 55 (155)
Q Consensus 9 ~kln~~~~~LRsl~p~~k~DKaSIl~d--AI~YIk~Lq~~v~~Le~e~~ 55 (155)
.-+|+++..++.-.|.-..+|++||.- ..+=.-+++++++.|++++.
T Consensus 34 ~~vd~km~ei~~~~~~ls~~~iAVLaALNia~El~k~~~~~~~l~~~~~ 82 (85)
T PRK14126 34 AIVDDKMRELNEKNPSLDTSKLAVLTAVNVIHDYIKLKEEYEKLKESMT 82 (85)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999998888777889998762 33333446777777777654
No 168
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=40.04 E-value=45 Score=21.84 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhcc
Q 031670 30 TSIVVDASKYIEELKQQVETLNQEIGT 56 (155)
Q Consensus 30 aSIl~dAI~YIk~Lq~~v~~Le~e~~~ 56 (155)
.+=|++|+.-+.+|+.+++.|..++..
T Consensus 39 ~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 39 ERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344899999999999999999998654
No 169
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=40.00 E-value=86 Score=18.98 Aligned_cols=27 Identities=11% Similarity=0.198 Sum_probs=22.3
Q ss_pred ccCCCCHHHHHHHHHHhCCCeEEEEEEE
Q 031670 85 EKNCSGLLVSVLEAFEDLGLEVLDARVS 112 (155)
Q Consensus 85 ~~~~~g~l~~il~aLe~l~L~V~~a~is 112 (155)
+.. +|.+.+++.+|.+.|+++.-..-+
T Consensus 10 ~~~-~g~~~~i~~~L~~~~I~i~~i~~~ 36 (75)
T cd04913 10 PDK-PGVAAKIFGALAEANINVDMIVQN 36 (75)
T ss_pred CCC-CcHHHHHHHHHHHcCCeEEEEEeC
Confidence 556 899999999999999999755433
No 170
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=39.95 E-value=57 Score=26.70 Aligned_cols=46 Identities=9% Similarity=0.280 Sum_probs=31.3
Q ss_pred HHHHHHhHHHhhcCCCCCC---------------------CcccchHHHHHHHHHHHHHHHHHHHhhhc
Q 031670 8 KAALYEKLMLLRDVTNSTS---------------------MNKTSIVVDASKYIEELKQQVETLNQEIG 55 (155)
Q Consensus 8 R~kln~~~~~LRsl~p~~k---------------------~DKaSIl~dAI~YIk~Lq~~v~~Le~e~~ 55 (155)
|.-|.+.|..||......| |-.+-||.++ =||.++.||++||.++.
T Consensus 6 ~qLI~~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~--AL~~a~~ri~eLe~ql~ 72 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQ--ALKQAQARIQELEAQLQ 72 (247)
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 5678899999999853222 2333344442 26889999999999874
No 171
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=39.77 E-value=52 Score=29.42 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=35.1
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEE
Q 031670 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLE 120 (155)
Q Consensus 79 ~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~ 120 (155)
.++|.|.+| -|+..+|+..|-..++++....|.+.+...++
T Consensus 2 rl~~~~~dr-~g~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~ 42 (520)
T PRK10820 2 RLEVFCEDR-LGLTRELLDLLVLRSIDLRGIEIDPIGRIYLN 42 (520)
T ss_pred eEEEEeecc-ccHHHHHHHHHHhcCCCccEEEEcCCCeEEEe
Confidence 578999999 99999999999999999999998776543333
No 172
>PRK06635 aspartate kinase; Reviewed
Probab=39.70 E-value=2.4e+02 Score=24.03 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=30.2
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 76 ~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
+-..|++.+-...+|.+.+++.+|.+.|++|...+.+...
T Consensus 261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~ 300 (404)
T PRK06635 261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSE 300 (404)
T ss_pred CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC
Confidence 4466777663332899999999999999999987655444
No 173
>PLN02551 aspartokinase
Probab=38.32 E-value=2.8e+02 Score=25.11 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=43.7
Q ss_pred EEEeCCeEEEEEEec--cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHHHHHHH
Q 031670 71 VETLEKGFLINVYLE--KNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQAIK 148 (155)
Q Consensus 71 V~~~~~~~~i~I~c~--~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~ 148 (155)
|....+-..|.|... .. +|++.+++++|.+.|++|.-.+-.+++ ..+-+.+ .. -+.+..-++||+.+-
T Consensus 439 V~v~~~vAiISvVG~~~~~-~gvaariF~aLa~~gInV~mIsqgaSe-inIS~vV-~~-------~d~~~Av~aLH~~Ff 508 (521)
T PLN02551 439 VNLLQGRSIISLIGNVQRS-SLILEKVFRVLRTNGVNVQMISQGASK-VNISLIV-ND-------DEAEQCVRALHSAFF 508 (521)
T ss_pred EEEeCCEEEEEEEccCCCC-ccHHHHHHHHHHHCCCCeEEEEecCCC-cEEEEEE-eH-------HHHHHHHHHHHHHHh
Confidence 334444556666554 34 899999999999999999876654432 2222222 22 155667778888774
Q ss_pred h
Q 031670 149 N 149 (155)
Q Consensus 149 ~ 149 (155)
.
T Consensus 509 ~ 509 (521)
T PLN02551 509 E 509 (521)
T ss_pred c
Confidence 3
No 174
>PRK06349 homoserine dehydrogenase; Provisional
Probab=38.17 E-value=2e+02 Score=25.00 Aligned_cols=36 Identities=11% Similarity=0.342 Sum_probs=31.4
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSC 113 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~ 113 (155)
.++|++..+++ ||.|.+|-..|.+.++++.+..-..
T Consensus 348 ~yylRl~v~d~-pGvLa~I~~~f~~~~vsI~si~q~~ 383 (426)
T PRK06349 348 KYYLRLLVADK-PGVLAKIAAIFAENGISIESILQKG 383 (426)
T ss_pred eEEEEEEecCC-cchHHHHHHHHhhcCccEEEEEecc
Confidence 49999999999 9999999999999999888664433
No 175
>PRK06291 aspartate kinase; Provisional
Probab=38.04 E-value=2.7e+02 Score=24.53 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=42.3
Q ss_pred EEEeCCeEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEecccccCCCCCCCHHHHHHHHHHH
Q 031670 71 VETLEKGFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQA 146 (155)
Q Consensus 71 V~~~~~~~~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~a 146 (155)
|+..++-..|.|... .. +|.+.+++.+|.+.|++|.-.+-++++- +++ .+ ... +.+...++||+.
T Consensus 392 i~~~~~~a~IsvvG~gm~~~-~gv~~rif~aL~~~~I~v~~isqgsSe~~Is~--vV-~~~-------d~~~av~~Lh~~ 460 (465)
T PRK06291 392 VTFDKDVCVVAVVGAGMAGT-PGVAGRIFSALGESGINIKMISQGSSEVNISF--VV-DEE-------DGERAVKVLHDE 460 (465)
T ss_pred eEEeCCEEEEEEEcCCccCC-cChHHHHHHHHHHCCCCEEEEEeccccCeEEE--EE-eHH-------HHHHHHHHHHHH
Confidence 444445566666664 35 8999999999999999998666555432 333 22 221 355666777776
Q ss_pred H
Q 031670 147 I 147 (155)
Q Consensus 147 i 147 (155)
+
T Consensus 461 f 461 (465)
T PRK06291 461 F 461 (465)
T ss_pred h
Confidence 5
No 176
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=37.74 E-value=62 Score=24.91 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=30.8
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~ 114 (155)
+.+-|.-+.+ ||.|+++|+-|-+.|-++++..-+..
T Consensus 6 itldIEL~D~-PGQLl~vLqPls~~g~NiItIiH~r~ 41 (170)
T COG2061 6 ITLDIELKDK-PGQLLKVLQPLSKTGANIITIIHSRD 41 (170)
T ss_pred EEEEEEecCC-CcchhhhhcchhhcCccEEEEEeecC
Confidence 4566777899 99999999999999999998776664
No 177
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=37.70 E-value=2.1e+02 Score=24.46 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=54.4
Q ss_pred HHHHHHHhHHHhhcC-C-CCCCCc-----ccchHHHHHHHHHHHHHHHHHHHhhhccCccccCCCCCCeEEEEEeCCeEE
Q 031670 7 NKAALYEKLMLLRDV-T-NSTSMN-----KTSIVVDASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFL 79 (155)
Q Consensus 7 RR~kln~~~~~LRsl-~-p~~k~D-----KaSIl~dAI~YIk~Lq~~v~~Le~e~~~~~~~~~~~~~p~V~V~~~~~~~~ 79 (155)
|-+++=.+|..||+. | |++-.| +++...+..+|++.|++-+++|+..-... .....|=..|
T Consensus 173 ~~R~~~~~l~~l~~~~p~pitg~e~~~~~~~~~~~~~~e~~~~L~~~l~el~~~~~~~--------~~~~RIl~tG---- 240 (380)
T TIGR02263 173 DNRKLIQALYGLRADEPWKVPSADLYLLLRAGLVIPVEEHNQMLADYLAAARKQEAPI--------KDNCRVIICG---- 240 (380)
T ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhccccC--------CCCCEEEEEC----
Confidence 334455677888888 5 566544 33445678899999999998887632100 0011111111
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 031670 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (155)
Q Consensus 80 i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~ 116 (155)
+-|+.. ...+++.+|+.|..|+.-+ .|.+.
T Consensus 241 --~~~~~~----~~k~~~~iE~~G~~VV~dd-~c~g~ 270 (380)
T TIGR02263 241 --MFCEQP----PLNLIKSIELSGCYIVDDD-FIIVH 270 (380)
T ss_pred --cCCCCc----hHHHHHHHHHCCCEEEEec-CCccc
Confidence 223222 3788999999999999544 55543
No 178
>smart00338 BRLZ basic region leucin zipper.
Probab=37.46 E-value=30 Score=21.82 Aligned_cols=19 Identities=42% Similarity=0.489 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 031670 38 KYIEELKQQVETLNQEIGT 56 (155)
Q Consensus 38 ~YIk~Lq~~v~~Le~e~~~ 56 (155)
.|+.+|+.+++.|+.+...
T Consensus 26 ~~~~~Le~~~~~L~~en~~ 44 (65)
T smart00338 26 AEIEELERKVEQLEAENER 44 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4788888888888775443
No 179
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.46 E-value=41 Score=21.26 Aligned_cols=41 Identities=15% Similarity=0.341 Sum_probs=30.6
Q ss_pred hhHHHHHHHhHHHhhcCCCCCCCcccchHHHHHHHHHHHHHHHHHHH
Q 031670 5 EQNKAALYEKLMLLRDVTNSTSMNKTSIVVDASKYIEELKQQVETLN 51 (155)
Q Consensus 5 R~RR~kln~~~~~LRsl~p~~k~DKaSIl~dAI~YIk~Lq~~v~~Le 51 (155)
|.-|=...+++..+..+.-..+.| +|.+||+++-..++...
T Consensus 17 R~~RHD~~NhLqvI~gllqlg~~~------~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQLGKYE------EAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HH------HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHHHH
Confidence 455667778888888887666654 56899999998888773
No 180
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=37.13 E-value=1e+02 Score=20.37 Aligned_cols=39 Identities=31% Similarity=0.464 Sum_probs=25.4
Q ss_pred EEEEEeccCCCCHH----HHHHHHHHhCCCe-EEEEEEEeeCCeEEE
Q 031670 79 LINVYLEKNCSGLL----VSVLEAFEDLGLE-VLDARVSCSDRFQLE 120 (155)
Q Consensus 79 ~i~I~c~~~~~g~l----~~il~aLe~l~L~-V~~a~is~~~~~~l~ 120 (155)
.++|.-..+ ||++ ..+..+|..||+. |.++.+.. .|.+.
T Consensus 2 ~~~V~V~~k-~gv~Dp~G~ai~~~l~~lg~~~v~~Vr~~k--~~~l~ 45 (80)
T PRK05974 2 KVKVTVTLK-EGVLDPQGQAIKGALGSLGYDGVEDVRQGK--YFELE 45 (80)
T ss_pred EEEEEEEEC-CCCcChHHHHHHHHHHHcCCCCcceEEEEE--EEEEE
Confidence 355555566 7754 4688899999997 77755443 34443
No 181
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=36.72 E-value=31 Score=21.70 Aligned_cols=20 Identities=45% Similarity=0.682 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 031670 37 SKYIEELKQQVETLNQEIGT 56 (155)
Q Consensus 37 I~YIk~Lq~~v~~Le~e~~~ 56 (155)
-.||.+|+.++..|+.+...
T Consensus 25 k~~~~~Le~~~~~L~~en~~ 44 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEE 44 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 36888888888888776543
No 182
>PRK06635 aspartate kinase; Reviewed
Probab=36.06 E-value=2.7e+02 Score=23.66 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=29.9
Q ss_pred EEEeCCeEEEEEEe---ccCCCCHHHHHHHHHHhCCCeEEEEE
Q 031670 71 VETLEKGFLINVYL---EKNCSGLLVSVLEAFEDLGLEVLDAR 110 (155)
Q Consensus 71 V~~~~~~~~i~I~c---~~~~~g~l~~il~aLe~l~L~V~~a~ 110 (155)
+....+-..|.|.+ +.. +|.+.+++.+|.+.|++|....
T Consensus 334 i~~~~~ia~isvvG~~~~~~-~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 334 VTYDDDIAKVSVVGVGMRSH-PGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred EEEcCCeEEEEEECCCCCCC-chHHHHHHHHHHHCCCCEEEEE
Confidence 34444556777765 356 8999999999999999998764
No 183
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=35.99 E-value=1.3e+02 Score=20.11 Aligned_cols=42 Identities=31% Similarity=0.428 Sum_probs=28.2
Q ss_pred EEEEEeccCCCCHH----HHHHHHHHhCCCe-EEEEEEEeeCCeEEEE
Q 031670 79 LINVYLEKNCSGLL----VSVLEAFEDLGLE-VLDARVSCSDRFQLEA 121 (155)
Q Consensus 79 ~i~I~c~~~~~g~l----~~il~aLe~l~L~-V~~a~is~~~~~~l~~ 121 (155)
.++|.-..+ +|++ --|..+|..||++ |.++.+...-.|.+++
T Consensus 2 ~~~V~V~~K-~gvlDPqG~ai~~al~~lG~~~v~~Vr~GK~~~l~~~~ 48 (80)
T PF02700_consen 2 KVRVEVTLK-PGVLDPQGEAIKRALHRLGYDGVKDVRVGKYIELELEA 48 (80)
T ss_dssp EEEEEEEE--TTS--HHHHHHHHHHHHTT-TTEEEEEEEEEEEEEEE-
T ss_pred EEEEEEEEC-CCCcCcHHHHHHHHHHHcCCcccCcEEEEEEEEEEEeC
Confidence 456666666 7755 3689999999999 8888887766666654
No 184
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.83 E-value=1.3e+02 Score=19.80 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=23.9
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEE
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARV 111 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~i 111 (155)
..+.+.-+.+ ||.|.+++++|- +-+|.....
T Consensus 2 ~vl~v~ipD~-PG~L~~ll~~l~--~anI~~~~y 32 (85)
T cd04906 2 ALLAVTIPER-PGSFKKFCELIG--PRNITEFNY 32 (85)
T ss_pred eEEEEecCCC-CcHHHHHHHHhC--CCceeEEEE
Confidence 3578888999 999999999998 555554443
No 185
>PRK08210 aspartate kinase I; Reviewed
Probab=35.54 E-value=1.8e+02 Score=24.92 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=29.9
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEE
Q 031670 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVS 112 (155)
Q Consensus 76 ~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is 112 (155)
+-..|+|......+|.+.+|+++|.+.|+.|.....+
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec
Confidence 4467888775544899999999999999999887544
No 186
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=34.82 E-value=2.1e+02 Score=25.27 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhC-CCeEEEEEEEeeCC-eEEEEEecccccCCCCCCCHHHHHHHHHHHHHhhccc
Q 031670 91 LLVSVLEAFEDL-GLEVLDARVSCSDR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKNVQDS 153 (155)
Q Consensus 91 ~l~~il~aLe~l-~L~V~~a~is~~~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~~~~~ 153 (155)
...+.++++|.+ |+++-++.++-.+. +..+.........++..++.+||..++..|.....+.
T Consensus 58 sI~~av~~AE~mag~~i~~v~vs~sG~~i~s~~~~g~v~i~~~~eIt~~DI~rvl~~A~~~~~~~ 122 (418)
T COG0849 58 SIKKAVEAAERMAGCEIKSVIVSLSGNHIKSQNVNGEVSISEEKEITQEDIERVLEAAKAVAIPP 122 (418)
T ss_pred HHHHHHHHHHHhcCCCcceEEEEeccceeEEEeeEEEEEcCCCCccCHHHHHHHHHHHHhhccCC
Confidence 345667777777 99999999888775 2222111111111337899999999999998766544
No 187
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=34.46 E-value=1.3e+02 Score=26.72 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=31.5
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
..|-++.+++ +|.|.++|..|...|+++.+....+..
T Consensus 17 TSLiFsL~d~-pGaL~~vL~vFa~~gINLthIESRPsk 53 (436)
T TIGR01268 17 TSLIFSLKEE-AGALAETLKLFQAHDVNLTHIESRPSK 53 (436)
T ss_pred EEEEEEcCCC-CcHHHHHHHHHHHCCCCeeEEecccCC
Confidence 4455555788 999999999999999999999988863
No 188
>PF14992 TMCO5: TMCO5 family
Probab=33.83 E-value=50 Score=27.60 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 031670 33 VVDASKYIEELKQQVETLNQEIG 55 (155)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~ 55 (155)
-.|+..||++||+.++.++.+..
T Consensus 146 ~eDq~~~i~klkE~L~rmE~ekE 168 (280)
T PF14992_consen 146 CEDQANEIKKLKEKLRRMEEEKE 168 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999987544
No 189
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=33.83 E-value=3e+02 Score=23.41 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=26.2
Q ss_pred CCeEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEE
Q 031670 75 EKGFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLDAR 110 (155)
Q Consensus 75 ~~~~~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~ 110 (155)
.+-..|.+... .. +|.+.+++.+|.+.|+++....
T Consensus 335 ~~~a~IsvVG~~~~~~-~g~~a~i~~~L~~~gIni~~i~ 372 (401)
T TIGR00656 335 EGLAKVSIVGAGMVGA-PGVASEIFSALEEKNINILMIG 372 (401)
T ss_pred CCeEEEEEECCCcccC-ccHHHHHHHHHHHCCCcEEEEE
Confidence 33345555553 56 9999999999999999998543
No 190
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=33.39 E-value=3.6e+02 Score=25.83 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=33.2
Q ss_pred EEEeCCeEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 031670 71 VETLEKGFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (155)
Q Consensus 71 V~~~~~~~~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~is~~ 114 (155)
++..++-..|.|... .. +|++.+++.+|.+.|++|.-.+-+++
T Consensus 390 i~~~~~valIsvvG~gm~~~-~gv~arif~aL~~~~InI~~IsqgsS 435 (819)
T PRK09436 390 LEVEENLAIISVVGDGMRTH-PGIAAKFFSALGRANINIVAIAQGSS 435 (819)
T ss_pred EEEeCCEEEEEEEccCcccC-cCHHHHHHHHHHHCCCCEEEEEeccc
Confidence 455556677777775 35 89999999999999999987665554
No 191
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=33.30 E-value=1e+02 Score=18.03 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=21.6
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEE
Q 031670 86 KNCSGLLVSVLEAFEDLGLEVLDARV 111 (155)
Q Consensus 86 ~~~~g~l~~il~aLe~l~L~V~~a~i 111 (155)
.. +|.+.+++.+|...+++|.-.+.
T Consensus 12 ~~-~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 12 SH-PGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred CC-ccHHHHHHHHHHHCCCcEEEEEc
Confidence 45 78999999999999999977764
No 192
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=33.28 E-value=24 Score=21.50 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhhhccCc
Q 031670 40 IEELKQQVETLNQEIGTSE 58 (155)
Q Consensus 40 Ik~Lq~~v~~Le~e~~~~~ 58 (155)
|..|+++|+.|+.++..+.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq 19 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQ 19 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 4456777777776665543
No 193
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=32.68 E-value=63 Score=21.22 Aligned_cols=32 Identities=16% Similarity=0.058 Sum_probs=21.6
Q ss_pred eEEEEEeC-CeEEEEEEeccCCCCHHHHHHHHHH
Q 031670 68 VVTVETLE-KGFLINVYLEKNCSGLLVSVLEAFE 100 (155)
Q Consensus 68 ~V~V~~~~-~~~~i~I~c~~~~~g~l~~il~aLe 100 (155)
+-+|+... +++.+.|.|+++ .=+|..|=..++
T Consensus 6 dW~Vsrt~dGdYrL~itcp~K-e~LlqSIEgmi~ 38 (71)
T PF11619_consen 6 DWEVSRTLDGDYRLVITCPKK-EWLLQSIEGMIK 38 (71)
T ss_dssp S-EEEEETTTCEEEEEEESSH-HHHHHHHHHHHH
T ss_pred cceeeeccCCceEEEEecCcH-HHHHHHHHHHHH
Confidence 45777775 569999999999 555555544443
No 194
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=30.49 E-value=1.1e+02 Score=20.44 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhhhccCccccCCCCCCeEEEEEeCCeEEEEEEe
Q 031670 39 YIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYL 84 (155)
Q Consensus 39 YIk~Lq~~v~~Le~e~~~~~~~~~~~~~p~V~V~~~~~~~~i~I~c 84 (155)
-++++++++++++++++....+.. ...-.|+|.+.+++-.+.|.-
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~-s~~g~V~V~v~g~g~v~~i~i 47 (93)
T PF02575_consen 3 QAQEMQEKMEEAQEELAEIEVTGT-SGDGLVTVTVNGNGEVVDIEI 47 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHSEEEEE-ETCCTEEEEEETTS-EEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCEEEEE-ECCCEEEEEEecCceEEEEEE
Confidence 467888888888888776542110 011138888877664444443
No 195
>PRK08526 threonine dehydratase; Provisional
Probab=30.41 E-value=2.7e+02 Score=24.11 Aligned_cols=37 Identities=11% Similarity=0.227 Sum_probs=33.1
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~ 114 (155)
.+.+.+.-+.+ ||.|.+++..+-+.+.+|........
T Consensus 326 ~~~~~~~~~d~-pg~l~~~~~~~~~~~~~i~~~~~~r~ 362 (403)
T PRK08526 326 KMKLHVTLVDK-PGALMGLTDILKEANANIVKIDYDRF 362 (403)
T ss_pred EEEEEEEcCCC-CCHHHHHHHHHccCCCcEEEEEEEec
Confidence 48899999999 99999999999999999998887553
No 196
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=30.39 E-value=73 Score=23.58 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=23.3
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEE
Q 031670 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDA 109 (155)
Q Consensus 80 i~I~c~~~~~g~l~~il~aLe~l~L~V~~a 109 (155)
+-|.-+.. ||.|.+|+++|-..++++--+
T Consensus 72 laVEmeD~-PG~l~~I~~vl~d~diNldYi 100 (142)
T COG4747 72 LAVEMEDV-PGGLSRIAEVLGDADINLDYI 100 (142)
T ss_pred EEEEecCC-CCcHHHHHHHHhhcCcCceee
Confidence 34566899 999999999999997766543
No 197
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=29.88 E-value=67 Score=21.20 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 031670 33 VVDASKYIEELKQQVETLNQEI 54 (155)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~ 54 (155)
+..||+-|..||.++++|+.+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n 34 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKN 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999998753
No 198
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=29.82 E-value=3.7e+02 Score=23.29 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=30.3
Q ss_pred EEEeCCeEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEE
Q 031670 71 VETLEKGFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLDAR 110 (155)
Q Consensus 71 V~~~~~~~~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~ 110 (155)
+....+-..|.|... .. +|.+.+++++|.+.|++|....
T Consensus 372 I~~~~~~a~VsvvG~~~~~~-~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 372 VEVEKGLAKVSLVGAGMKSA-PGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred EEEcCCeEEEEEEcCCCCCC-CchHHHHHHHHHHCCCCEEEEE
Confidence 444455577777543 45 8999999999999999998776
No 199
>PRK06545 prephenate dehydrogenase; Validated
Probab=29.18 E-value=1.4e+02 Score=25.27 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=32.6
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
-+.+.|.-+++ ||.+.+++..|-+.|+++.+..|.-.-
T Consensus 290 ~~~~~v~v~d~-pg~~~~~~~~~~~~~i~i~~~~i~~~~ 327 (359)
T PRK06545 290 FYDLYVDVPDE-PGVIARVTAILGEEGISIENLRILEAR 327 (359)
T ss_pred ceEEEEeCCCC-CCHHHHHHHHHHHcCCCeecceeeecc
Confidence 36677777999 999999999999999999998886653
No 200
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=28.98 E-value=1.7e+02 Score=19.96 Aligned_cols=43 Identities=30% Similarity=0.529 Sum_probs=31.2
Q ss_pred EEEEEEeccCCCCHH----HHHHHHHHhCCCe-EEEEEEEeeCCeEEEE
Q 031670 78 FLINVYLEKNCSGLL----VSVLEAFEDLGLE-VLDARVSCSDRFQLEA 121 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l----~~il~aLe~l~L~-V~~a~is~~~~~~l~~ 121 (155)
+.++|.-..+ +|+| .-|-.+|..||.. |.++++.-.-.|.+++
T Consensus 2 ~~v~V~V~lK-~~VlDPqG~ti~~aL~~lg~~~V~~vR~gK~~el~ld~ 49 (83)
T COG1828 2 YKVRVYVTLK-PGVLDPEGETIEKALHRLGYNEVSDVRVGKVIELELDA 49 (83)
T ss_pred eEEEEEEEeC-CcccCchhHHHHHHHHHcCCcccceeeeeeEEEEEecC
Confidence 3455666666 6654 3688999999977 9998887776666654
No 201
>COG3474 Cytochrome c2 [Energy production and conversion]
Probab=28.80 E-value=65 Score=24.05 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=25.9
Q ss_pred HHHHHhHHHhhcCCCCCCCc-----ccchHHHHHHHHHHH
Q 031670 9 AALYEKLMLLRDVTNSTSMN-----KTSIVVDASKYIEEL 43 (155)
Q Consensus 9 ~kln~~~~~LRsl~p~~k~D-----KaSIl~dAI~YIk~L 43 (155)
+.|+.-|..=+..+|-|||- |---..|-|.|+|.+
T Consensus 91 ~~L~~fL~~Pkk~vpGTkM~faGlkk~~dradlIAYLk~~ 130 (135)
T COG3474 91 DNLDEFLTAPKKYVPGTKMAFAGLKKDQDRADLIAYLKSL 130 (135)
T ss_pred HHHHHHHhChhhhCCCcceeecCCCCHHHHHHHHHHHHhc
Confidence 34666666667778899984 556688999999865
No 202
>PRK09084 aspartate kinase III; Validated
Probab=28.75 E-value=2.6e+02 Score=24.60 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=29.6
Q ss_pred CCeEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEE
Q 031670 75 EKGFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARV 111 (155)
Q Consensus 75 ~~~~~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~i 111 (155)
.+-++|+|.+. .. +|.+.+++++|...|+.|.-.+.
T Consensus 304 ~~i~lItv~~~~~~~~-~g~~a~if~~l~~~~I~Vd~I~s 342 (448)
T PRK09084 304 RNQTLLTLHSLNMLHA-RGFLAEVFGILARHKISVDLITT 342 (448)
T ss_pred CCEEEEEEecCCCCcc-ccHHHHHHHHHHHcCCeEEEEec
Confidence 34578899875 35 79999999999999999988763
No 203
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=28.27 E-value=1.6e+02 Score=18.73 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=21.5
Q ss_pred HHHHhCCCeEEEEEEEeeCCeEEEEEeccc
Q 031670 97 EAFEDLGLEVLDARVSCSDRFQLEAVGGDH 126 (155)
Q Consensus 97 ~aLe~l~L~V~~a~is~~~~~~l~~~~~~~ 126 (155)
+.++..|..+..=.|.|.|||.|...-+..
T Consensus 3 ~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~ 32 (63)
T PF04083_consen 3 ELIEKHGYPCEEHEVTTEDGYILTLHRIPP 32 (63)
T ss_dssp HHHHHTT---EEEEEE-TTSEEEEEEEE-S
T ss_pred HHHHHcCCCcEEEEEEeCCCcEEEEEEccC
Confidence 457888999999999999999999887654
No 204
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=27.69 E-value=2e+02 Score=19.44 Aligned_cols=48 Identities=27% Similarity=0.375 Sum_probs=32.5
Q ss_pred CCeEEEEEe-CCeEEEEEEeccCCCC---------HHHHHHHHHHhC-CCeEEEEEEEee
Q 031670 66 LPVVTVETL-EKGFLINVYLEKNCSG---------LLVSVLEAFEDL-GLEVLDARVSCS 114 (155)
Q Consensus 66 ~p~V~V~~~-~~~~~i~I~c~~~~~g---------~l~~il~aLe~l-~L~V~~a~is~~ 114 (155)
.+.|.|+.. ++++.|.+.+.=. .| +-.++-++++.+ |++|...++...
T Consensus 47 ~~~v~v~~~~~~~i~v~l~v~v~-~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V~ 105 (108)
T PF03780_consen 47 SKGVKVEVDEDGGITVDLHVVVE-YGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHVE 105 (108)
T ss_pred CCCeEEEEccCcceEEEEEEEEE-CCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEEE
Confidence 346888887 6777776666433 22 334566777887 999999888653
No 205
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=27.51 E-value=3e+02 Score=21.47 Aligned_cols=43 Identities=9% Similarity=0.078 Sum_probs=35.0
Q ss_pred EEEeCCeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 031670 71 VETLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (155)
Q Consensus 71 V~~~~~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~ 114 (155)
|...+++.++=+...++ ||.+.++-..|-+.++++-..+++..
T Consensus 142 vd~~~~g~~L~~~~~D~-PG~Ig~vg~~Lg~~~iNIa~m~v~r~ 184 (208)
T TIGR00719 142 IEFRGEHPAILLEHNDK-FGTIAGVANLLAGFEINIEHLETAKK 184 (208)
T ss_pred EEecCCccEEEEEeCCC-CChHHHHHHHHHhCCccEEEEEEEec
Confidence 44444555666666788 99999999999999999999999885
No 206
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=26.70 E-value=75 Score=18.21 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q 031670 38 KYIEELKQQVETL 50 (155)
Q Consensus 38 ~YIk~Lq~~v~~L 50 (155)
.||+.|..++.+|
T Consensus 23 ~YV~~L~~rl~el 35 (35)
T PF12180_consen 23 AYVRGLLARLKEL 35 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 5899998888775
No 207
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=26.58 E-value=72 Score=23.88 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=20.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhccC
Q 031670 31 SIVVDASKYIEELKQQVETLNQEIGTS 57 (155)
Q Consensus 31 SIl~dAI~YIk~Lq~~v~~Le~e~~~~ 57 (155)
-+||.||. |+|+.++++++.+....
T Consensus 66 EvLG~AIQ--kHLE~qi~e~~~q~~~~ 90 (137)
T PF15235_consen 66 EVLGMAIQ--KHLERQIEEHERQRAPQ 90 (137)
T ss_pred HHHHHHHH--HHHHHHHHHhhhccccc
Confidence 45999997 89999999998866543
No 208
>PRK07431 aspartate kinase; Provisional
Probab=26.00 E-value=5e+02 Score=23.50 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=39.1
Q ss_pred CCeEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHHHHHH
Q 031670 75 EKGFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQAI 147 (155)
Q Consensus 75 ~~~~~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai 147 (155)
++-..|.+.-. .. +|++.+++.+|.+.|++|.... + ....+...+ +. -+.+..-++||+++
T Consensus 517 ~~va~VSvVG~gm~~~-~gv~~ri~~aL~~~~I~v~~i~--~-S~~~Is~vV-~~-------~~~~~av~~Lh~~f 580 (587)
T PRK07431 517 PAIAKVSIVGAGMPGT-PGVAARMFRALADAGINIEMIA--T-SEIRTSCVV-AE-------DDGVKALQAVHQAF 580 (587)
T ss_pred CCeEEEEEECCCccCC-cCHHHHHHHHHHHCCCcEEEee--c-cceEEEEEE-eH-------HHHHHHHHHHHHHh
Confidence 33344444443 45 8999999999999999997766 2 233333322 22 15666777777776
No 209
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=25.81 E-value=1.7e+02 Score=25.45 Aligned_cols=54 Identities=15% Similarity=0.287 Sum_probs=40.2
Q ss_pred CeEEEEEeCCeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEE
Q 031670 67 PVVTVETLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEA 121 (155)
Q Consensus 67 p~V~V~~~~~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~ 121 (155)
|.+..........|-|.-.++ ||.+.+|...|.+.++++-+-++...++.-+.+
T Consensus 328 ~~~~~~~~~~~~rlii~h~d~-pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~i 381 (409)
T PRK11790 328 PEVSLPEHPGGHRLLHIHENR-PGVLAAINQIFAEQGINIAAQYLQTDGEIGYVV 381 (409)
T ss_pred cccccCCCCCCceEEEEeCCC-CCHHHHHHHHHHhcCCCHHHheeccCCCEEEEE
Confidence 444433322447788888889 999999999999999999888887777644433
No 210
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=25.70 E-value=1.8e+02 Score=18.25 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=27.4
Q ss_pred EEEEEec-cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEE
Q 031670 79 LINVYLE-KNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQL 119 (155)
Q Consensus 79 ~i~I~c~-~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l 119 (155)
.|+|.-. .. +|.+.+|++.|.+.|++|--.+.+ .+++++
T Consensus 3 ~vtv~~~~~~-~~~~a~if~~La~~~InvDmI~~~-~~~isF 42 (67)
T cd04914 3 QIKVKAKDNE-NDLQQRVFKALANAGISVDLINVS-PEEVIF 42 (67)
T ss_pred EEEEecCCCC-ccHHHHHHHHHHHcCCcEEEEEec-CCCEEE
Confidence 4555543 44 799999999999999888777544 334444
No 211
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=25.52 E-value=1.6e+02 Score=17.65 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHhC-CCeEEEEEEEeeCC-eEEEEEecccccCCCCCCCHHHHHHHHHH
Q 031670 89 SGLLVSVLEAFEDL-GLEVLDARVSCSDR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQ 145 (155)
Q Consensus 89 ~g~l~~il~aLe~l-~L~V~~a~is~~~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ 145 (155)
++...+|-.+|.++ |+.-..++ ...+ .++.. +...++.++|..+|.+
T Consensus 10 ~~C~~~v~~~l~~~~GV~~v~vd--~~~~~v~v~~--------~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 10 EGCAKKVEKALSKLPGVKSVKVD--LETKTVTVTY--------DPDKTSIEKIIEAIEK 58 (62)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEE--TTTTEEEEEE--------STTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEE--CCCCEEEEEE--------ecCCCCHHHHHHHHHH
Confidence 56678899999999 77444433 3222 33322 1233788889888876
No 212
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=25.16 E-value=1.4e+02 Score=24.87 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=26.0
Q ss_pred hhhHHHHHHHhHHHhhcC-CCCCCCcccchHHHHHHHHHHHHHHHHHHHhh
Q 031670 4 REQNKAALYEKLMLLRDV-TNSTSMNKTSIVVDASKYIEELKQQVETLNQE 53 (155)
Q Consensus 4 ER~RR~kln~~~~~LRsl-~p~~k~DKaSIl~dAI~YIk~Lq~~v~~Le~e 53 (155)
-|.||+++.+.+..|..- |...| |..|++++..++.+
T Consensus 143 ~R~~r~~l~d~I~kLk~k~P~s~k-------------l~~LeqELvraEae 180 (271)
T PF13805_consen 143 SRDRRRKLQDEIAKLKYKDPQSPK-------------LVVLEQELVRAEAE 180 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTTTT-------------HHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHhcCCCChH-------------HHHHHHHHHHHHHH
Confidence 378999999999999987 43443 45566666555554
No 213
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.96 E-value=1.4e+02 Score=16.97 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=23.2
Q ss_pred ccCCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 031670 85 EKNCSGLLVSVLEAFEDLGLEVLDARVSC 113 (155)
Q Consensus 85 ~~~~~g~l~~il~aLe~l~L~V~~a~is~ 113 (155)
+.. +|.+.+++.+|.+.|+.+...+.+.
T Consensus 9 ~~~-~~~~~~i~~~L~~~~i~i~~i~~~~ 36 (61)
T cd04891 9 PDK-PGVAAKIFSALAEAGINVDMIVQSV 36 (61)
T ss_pred CCC-CcHHHHHHHHHHHcCCcEEEEEEcC
Confidence 456 8999999999999999997765543
No 214
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=24.11 E-value=1.8e+02 Score=23.40 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=26.3
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 031670 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (155)
Q Consensus 80 i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~ 116 (155)
+.+.|+.. -+..+-.+|++.|+++.++.+.-...
T Consensus 167 ~~~~c~p~---~~~~v~~~L~~~g~~i~~~e~~~~P~ 200 (234)
T PF01709_consen 167 FEFICDPS---DLSAVKKALEKKGYEIESAELEYIPN 200 (234)
T ss_dssp EEEEEEGG---GHHHHHHHHHHTT---SEEEEEEEES
T ss_pred EEEEECHH---HHHHHHHHHHHcCCCeeEEEEEEeCC
Confidence 88999876 89999999999999999988766544
No 215
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=24.07 E-value=4e+02 Score=23.06 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=29.0
Q ss_pred CCeEEEEEEeccCC-CCHHHHHHHHHHhCCCeEEEEE
Q 031670 75 EKGFLINVYLEKNC-SGLLVSVLEAFEDLGLEVLDAR 110 (155)
Q Consensus 75 ~~~~~i~I~c~~~~-~g~l~~il~aLe~l~L~V~~a~ 110 (155)
.+-..|.|.+..-. +|.+.+++++|.+.|+.|....
T Consensus 300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~ 336 (441)
T TIGR00657 300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLIT 336 (441)
T ss_pred CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEE
Confidence 34577888776542 6899999999999999998775
No 216
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.97 E-value=81 Score=19.67 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 031670 39 YIEELKQQVETLNQEIGT 56 (155)
Q Consensus 39 YIk~Lq~~v~~Le~e~~~ 56 (155)
.++.+++++++++++.+.
T Consensus 49 ~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 49 RIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 356777777777777654
No 217
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=23.83 E-value=1.5e+02 Score=26.69 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=31.7
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
..|-++.+.. +|.|.++|..|+..|+++.+....+..
T Consensus 32 tSLIFsL~d~-pGaL~~vL~vFa~~gINLThIESRPsk 68 (464)
T TIGR01270 32 LSIIFSLSNV-VGDLSKAIAIFQDRHINILHLESRDSK 68 (464)
T ss_pred EEEEEECCCC-chHHHHHHHHHHHCCCCEEEEECCcCC
Confidence 4555566788 999999999999999999999988864
No 218
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=23.77 E-value=1.9e+02 Score=19.55 Aligned_cols=20 Identities=40% Similarity=0.486 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhCCCeEEEEE
Q 031670 91 LLVSVLEAFEDLGLEVLDAR 110 (155)
Q Consensus 91 ~l~~il~aLe~l~L~V~~a~ 110 (155)
-|.+|-++|++-|++|+.-.
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~ 28 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLE 28 (80)
T ss_pred CchHHHHHHHHCCCEEEecC
Confidence 47899999999999998754
No 219
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.48 E-value=1.3e+02 Score=20.13 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Q 031670 33 VVDASKYIEELKQQVETLNQEIGT 56 (155)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~ 56 (155)
+.-||+-|.-||-.+++|+.+...
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~ 36 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNS 36 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 567899999999999999876543
No 220
>PLN02551 aspartokinase
Probab=23.19 E-value=2.7e+02 Score=25.13 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=28.3
Q ss_pred eEEEEEEecc---CCCCHHHHHHHHHHhCCCeEEEEE
Q 031670 77 GFLINVYLEK---NCSGLLVSVLEAFEDLGLEVLDAR 110 (155)
Q Consensus 77 ~~~i~I~c~~---~~~g~l~~il~aLe~l~L~V~~a~ 110 (155)
-.+|+|.+.. . +|.+.+|+.+|.+.|+.|.-..
T Consensus 366 v~li~i~~~~m~~~-~g~~arvf~~l~~~~I~Vd~Is 401 (521)
T PLN02551 366 VTMLDIVSTRMLGQ-YGFLAKVFSTFEDLGISVDVVA 401 (521)
T ss_pred eEEEEEecCCCCCc-ccHHHHHHHHHHHcCCcEEEEe
Confidence 3788998864 5 8999999999999999998874
No 221
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=23.05 E-value=2e+02 Score=25.65 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=33.7
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEE
Q 031670 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLE 120 (155)
Q Consensus 79 ~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~ 120 (155)
.|+|+|+++ -|+.-.+++.|-.-++++-...|-..+...+.
T Consensus 2 RleV~cedR-lGltrelLdlLv~r~idl~~iEid~~~~IYln 42 (511)
T COG3283 2 RLEVFCEDR-LGLTRELLDLLVLRGIDLRGIEIDPIGRIYLN 42 (511)
T ss_pred ceEEEehhh-hchHHHHHHHHHhcccCccceeecCCCeEEEe
Confidence 489999999 99999999999999999888888555544443
No 222
>PRK04280 arginine repressor; Provisional
Probab=22.94 E-value=26 Score=26.26 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.5
Q ss_pred HHHHHHHHHhCCCeEEEEEEEe
Q 031670 92 LVSVLEAFEDLGLEVLDARVSC 113 (155)
Q Consensus 92 l~~il~aLe~l~L~V~~a~is~ 113 (155)
-..+++.|+..|++|.+|++|.
T Consensus 21 QeeL~~~L~~~Gi~vTQATiSR 42 (148)
T PRK04280 21 QDELVDRLREEGFNVTQATVSR 42 (148)
T ss_pred HHHHHHHHHHcCCCeehHHHHH
Confidence 3578999999999999999887
No 223
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=22.55 E-value=5.3e+02 Score=23.11 Aligned_cols=39 Identities=10% Similarity=0.268 Sum_probs=30.8
Q ss_pred CCeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 031670 75 EKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (155)
Q Consensus 75 ~~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~ 114 (155)
+++.++=+....+ ||.+..+...|-+.++++-+.+++..
T Consensus 450 ~~~~~li~~~~D~-pG~I~~v~~~L~~~~iNIa~m~~~r~ 488 (526)
T PRK13581 450 PEGHMLIIRNRDR-PGVIGKVGTLLGEAGINIAGMQLGRR 488 (526)
T ss_pred CCceEEEEEeCCc-CChhHHHHHHHhhcCCCchhcEeccC
Confidence 3344444566788 99999999999999999988887763
No 224
>PHA03158 hypothetical protein; Provisional
Probab=22.47 E-value=82 Score=25.26 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=26.7
Q ss_pred hcCCC---CCCCcccchHHHH----------HHHHHHHHHHHHHHHhhhc
Q 031670 19 RDVTN---STSMNKTSIVVDA----------SKYIEELKQQVETLNQEIG 55 (155)
Q Consensus 19 Rsl~p---~~k~DKaSIl~dA----------I~YIk~Lq~~v~~Le~e~~ 55 (155)
|+-|| .+...|+.++..- -+++++|++++++|+..++
T Consensus 222 Rs~pPWCv~t~~EK~~~~kQllka~kkc~~~s~~~~~leeei~eleks~a 271 (273)
T PHA03158 222 RSGPPWCIKTAKEKAAILKQLLKAAKKCCKNSEHEKELEEEIEELEKSLA 271 (273)
T ss_pred ccCCCcEeecHHHhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhc
Confidence 55666 4666777775532 4689999999999997653
No 225
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=22.16 E-value=6.9e+02 Score=23.93 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=29.0
Q ss_pred CeEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 031670 76 KGFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSC 113 (155)
Q Consensus 76 ~~~~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~is~ 113 (155)
+-..|.|... .. +|.+.+++.+|.+.|+.|.-.+-++
T Consensus 314 dvalIsV~G~gm~~~-~G~~arIf~~La~~gI~V~mIsqss 353 (819)
T PRK09436 314 NMAMFNVSGPGMKGM-VGMASRVFAALSRAGISVVLITQSS 353 (819)
T ss_pred CEEEEEEEcCCCCCC-cCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 3467777754 45 8999999999999999997776544
No 226
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=21.72 E-value=12 Score=24.61 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=15.3
Q ss_pred HHHHHHHHhCCCeEEEEEEEe
Q 031670 93 VSVLEAFEDLGLEVLDARVSC 113 (155)
Q Consensus 93 ~~il~aLe~l~L~V~~a~is~ 113 (155)
..+++.|+..|++|.+|++|.
T Consensus 23 ~eL~~~L~~~Gi~vTQaTiSR 43 (70)
T PF01316_consen 23 EELVELLEEEGIEVTQATISR 43 (70)
T ss_dssp HHHHHHHHHTT-T--HHHHHH
T ss_pred HHHHHHHHHcCCCcchhHHHH
Confidence 478899999999999988776
No 227
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=21.58 E-value=60 Score=21.09 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHhCCCeE
Q 031670 90 GLLVSVLEAFEDLGLEV 106 (155)
Q Consensus 90 g~l~~il~aLe~l~L~V 106 (155)
..+.++..+|+++|++|
T Consensus 59 ~~~~Dv~~al~~~gi~v 75 (77)
T PF07524_consen 59 PNLQDVEQALEEMGISV 75 (77)
T ss_pred CCHHHHHHHHHHhCCCC
Confidence 34678888888888865
No 228
>PF10737 GerPC: Spore germination protein GerPC; InterPro: IPR019673 GerPC is required for the formation of functionally normal spores. The gerP locus encodes a number of proteins which are thought to be involved in the establishment of normal spore coat structure and/or permeability, which allows the access of germinants to their receptor [].
Probab=21.58 E-value=79 Score=24.61 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhhccCccccCC------CCCCeEEEEEeCCeEEEEEEe
Q 031670 40 IEELKQQVETLNQEIGTSEASTVE------NSLPVVTVETLEKGFLINVYL 84 (155)
Q Consensus 40 Ik~Lq~~v~~Le~e~~~~~~~~~~------~~~p~V~V~~~~~~~~i~I~c 84 (155)
|+.|++++++|++++..+.....- -.+...+|+..++...|-+.-
T Consensus 1 I~~LE~~~~~l~~e~~~Lk~~p~~~iekiEYkFdqLKVe~LeGTLNIGl~p 51 (176)
T PF10737_consen 1 IQRLEQRLQELQQELEELKQQPPTSIEKIEYKFDQLKVETLEGTLNIGLNP 51 (176)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCCCceeheeeehhhheeecccceeeeccCC
Confidence 467788888888777665431100 012345666666666665544
No 229
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.00 E-value=2.1e+02 Score=17.33 Aligned_cols=27 Identities=19% Similarity=0.475 Sum_probs=18.5
Q ss_pred EEEEEec---cCCCCHHHHHHHHHHhCCCeE
Q 031670 79 LINVYLE---KNCSGLLVSVLEAFEDLGLEV 106 (155)
Q Consensus 79 ~i~I~c~---~~~~g~l~~il~aLe~l~L~V 106 (155)
+|.+.+. .. +|++.+++++|...++.+
T Consensus 3 lIsvvG~~~~~~-~~v~~~i~~~L~~i~i~~ 32 (64)
T cd04917 3 LVALIGNDISET-AGVEKRIFDALEDINVRM 32 (64)
T ss_pred EEEEECCCccCC-cCHHHHHHHHHHhCCeEE
Confidence 3444443 35 899999999998654444
No 230
>PRK14646 hypothetical protein; Provisional
Probab=20.83 E-value=3.7e+02 Score=20.15 Aligned_cols=54 Identities=6% Similarity=0.087 Sum_probs=34.6
Q ss_pred HHHHHHHhCCCeEEEEEEEeeCC-eEEEEEecccccCCCCCCCHHHHHHHHHHHHHhhc
Q 031670 94 SVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKNVQ 151 (155)
Q Consensus 94 ~il~aLe~l~L~V~~a~is~~~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~~~ 151 (155)
-+-..++++|+++..+.+...++ .++.+.+-.. ++..++.+|. +.+.++|..+.
T Consensus 12 li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~---~g~gVtldDC-~~vSr~is~~L 66 (155)
T PRK14646 12 LLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKT---NGDDISLDDC-ALFNTPASEEI 66 (155)
T ss_pred HHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECC---CCCCccHHHH-HHHHHHHHHHh
Confidence 44556889999999999988654 6677766322 2334666665 34444554443
No 231
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=20.77 E-value=1.1e+02 Score=14.09 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=8.5
Q ss_pred CHHHHHHHHHHh
Q 031670 90 GLLVSVLEAFED 101 (155)
Q Consensus 90 g~l~~il~aLe~ 101 (155)
|.+-.++++|..
T Consensus 1 gvmdsllealqt 12 (15)
T PF06345_consen 1 GVMDSLLEALQT 12 (15)
T ss_dssp -HHHHHHHHHHH
T ss_pred CcHHHHHHHHHc
Confidence 567788888864
No 232
>PHA03386 P10 fibrous body protein; Provisional
Probab=20.21 E-value=1.2e+02 Score=21.20 Aligned_cols=30 Identities=20% Similarity=0.438 Sum_probs=20.5
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHhhhcc
Q 031670 27 MNKTSIVVDASKYIEELKQQVETLNQEIGT 56 (155)
Q Consensus 27 ~DKaSIl~dAI~YIk~Lq~~v~~Le~e~~~ 56 (155)
|.|-+||.--..-|+.+-.+|..|+..+..
T Consensus 1 MSKpnILl~Ir~dIkavd~KVdaLQ~qV~d 30 (94)
T PHA03386 1 MSKPSVLTQILDAVQEVDTKVDALQTQLNG 30 (94)
T ss_pred CCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 678888877777777766666666655443
Done!