Query 031670
Match_columns 155
No_of_seqs 114 out of 774
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 05:25:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 2.2E-16 7.7E-21 107.2 4.6 56 2-57 12-69 (82)
2 1nkp_B MAX protein, MYC proto- 99.5 1.1E-14 3.6E-19 98.9 5.4 55 2-56 8-65 (83)
3 4h10_B Circadian locomoter out 99.5 1.2E-14 4.2E-19 96.0 5.0 50 2-51 14-65 (71)
4 1hlo_A Protein (transcription 99.5 1.2E-14 4.1E-19 98.1 4.9 56 2-57 18-76 (80)
5 1nkp_A C-MYC, MYC proto-oncoge 99.5 7.5E-14 2.6E-18 95.9 5.9 53 2-54 12-68 (88)
6 1an4_A Protein (upstream stimu 99.4 3.1E-14 1.1E-18 92.4 2.7 46 2-47 11-63 (65)
7 4ati_A MITF, microphthalmia-as 99.4 9.9E-14 3.4E-18 100.1 5.6 53 2-54 33-90 (118)
8 1a0a_A BHLH, protein (phosphat 99.4 8.2E-14 2.8E-18 90.1 3.8 46 2-47 8-61 (63)
9 4h10_A ARYL hydrocarbon recept 99.4 4.6E-14 1.6E-18 93.8 2.1 44 2-45 15-63 (73)
10 1nlw_A MAD protein, MAX dimeri 99.4 9.5E-13 3.3E-17 88.9 5.7 55 2-56 7-65 (80)
11 3u5v_A Protein MAX, transcript 99.3 1.2E-12 4.1E-17 87.6 1.9 51 2-52 11-66 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.1 7.9E-11 2.7E-15 77.1 3.2 47 2-48 18-67 (68)
13 2ql2_B Neurod1, neurogenic dif 99.0 2.6E-10 8.8E-15 72.9 4.2 46 3-48 9-58 (60)
14 4f3l_A Mclock, circadian locom 98.9 1.2E-09 4.1E-14 90.8 4.8 45 2-46 18-64 (361)
15 2lfh_A DNA-binding protein inh 98.7 2.9E-09 9.7E-14 69.3 1.5 43 3-45 21-67 (68)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.7 8.2E-09 2.8E-13 86.7 3.4 45 2-46 19-68 (387)
17 4ath_A MITF, microphthalmia-as 98.2 1.4E-06 4.8E-11 58.7 4.8 46 8-53 4-54 (83)
18 4aya_A DNA-binding protein inh 98.0 7.7E-06 2.6E-10 56.6 4.5 47 4-50 33-83 (97)
19 1zpv_A ACT domain protein; str 97.2 0.0084 2.9E-07 39.3 11.2 67 77-149 5-72 (91)
20 1u8s_A Glycine cleavage system 96.7 0.011 3.7E-07 44.4 9.3 66 77-149 6-72 (192)
21 2nyi_A Unknown protein; protei 96.5 0.011 3.6E-07 44.9 8.1 46 77-123 5-51 (195)
22 2nyi_A Unknown protein; protei 96.4 0.022 7.6E-07 43.1 9.0 67 77-150 93-166 (195)
23 2ko1_A CTR148A, GTP pyrophosph 96.0 0.095 3.2E-06 33.6 9.6 38 78-116 6-43 (88)
24 1u8s_A Glycine cleavage system 96.0 0.086 2.9E-06 39.4 10.4 68 77-150 93-169 (192)
25 3p96_A Phosphoserine phosphata 95.1 0.07 2.4E-06 44.2 7.9 68 77-149 12-80 (415)
26 3o1l_A Formyltetrahydrofolate 95.1 0.25 8.5E-06 40.2 11.0 69 77-150 22-93 (302)
27 3obi_A Formyltetrahydrofolate 94.5 0.52 1.8E-05 38.0 11.3 70 76-150 5-77 (288)
28 3n0v_A Formyltetrahydrofolate 94.3 0.4 1.4E-05 38.6 10.3 68 76-149 7-77 (286)
29 3lou_A Formyltetrahydrofolate 93.8 0.49 1.7E-05 38.2 9.8 72 76-150 9-83 (292)
30 2jhe_A Transcription regulator 93.1 0.21 7.3E-06 35.7 6.1 36 79-115 2-37 (190)
31 3nrb_A Formyltetrahydrofolate 91.9 1.1 3.9E-05 35.9 9.5 67 76-149 6-75 (287)
32 2f1f_A Acetolactate synthase i 90.3 1 3.5E-05 33.4 7.1 37 78-115 4-40 (164)
33 2pc6_A Probable acetolactate s 88.0 3.1 0.0001 30.8 8.3 37 78-115 5-41 (165)
34 1y7p_A Hypothetical protein AF 85.7 2.9 0.0001 32.6 7.3 38 77-115 4-41 (223)
35 2fgc_A Acetolactate synthase, 84.0 3.6 0.00012 31.4 7.0 38 78-116 30-67 (193)
36 2f06_A Conserved hypothetical 76.2 17 0.00057 25.2 8.2 57 80-146 75-131 (144)
37 2re1_A Aspartokinase, alpha an 74.3 21 0.00073 25.5 9.1 39 71-110 97-138 (167)
38 2qmx_A Prephenate dehydratase; 68.5 27 0.00091 27.9 8.4 38 78-116 201-238 (283)
39 2f06_A Conserved hypothetical 67.6 27 0.00093 24.0 9.2 38 78-116 7-44 (144)
40 2qmw_A PDT, prephenate dehydra 67.2 32 0.0011 27.1 8.6 61 77-146 186-253 (267)
41 2wt7_A Proto-oncogene protein 66.8 11 0.00038 23.1 4.6 40 4-55 1-40 (63)
42 2er8_A Regulatory protein Leu3 66.7 4.4 0.00015 25.0 2.7 22 37-58 48-69 (72)
43 2dt9_A Aspartokinase; protein- 66.4 33 0.0011 24.5 8.7 67 70-148 88-157 (167)
44 2dtj_A Aspartokinase; protein- 64.6 30 0.001 25.0 7.5 66 71-148 89-157 (178)
45 3s1t_A Aspartokinase; ACT doma 60.9 38 0.0013 24.7 7.5 66 71-148 90-158 (181)
46 2re1_A Aspartokinase, alpha an 59.3 40 0.0014 24.0 7.3 41 71-112 19-60 (167)
47 3mwb_A Prephenate dehydratase; 59.2 45 0.0016 26.9 8.2 38 78-116 202-240 (313)
48 2dtj_A Aspartokinase; protein- 58.2 38 0.0013 24.5 7.0 42 71-113 9-51 (178)
49 2dt9_A Aspartokinase; protein- 57.0 49 0.0017 23.5 8.1 41 71-112 10-51 (167)
50 1zme_C Proline utilization tra 56.2 5 0.00017 24.5 1.6 21 37-57 43-63 (70)
51 1hwt_C Protein (heme activator 55.9 6.8 0.00023 24.6 2.2 22 37-58 57-78 (81)
52 1dh3_A Transcription factor CR 55.0 7.1 0.00024 23.5 2.1 19 38-56 22-40 (55)
53 2xze_Q Charged multivesicular 53.9 6.3 0.00022 22.5 1.6 12 9-20 29-40 (40)
54 3he4_B Synzip5; heterodimeric 52.9 11 0.00039 21.3 2.5 20 33-52 5-24 (46)
55 1gd2_E Transcription factor PA 51.6 11 0.00036 24.0 2.6 18 37-54 28-45 (70)
56 1ybx_A Conserved hypothetical 51.4 30 0.001 24.9 5.3 26 33-58 43-68 (143)
57 2oqq_A Transcription factor HY 47.8 9.2 0.00031 22.0 1.6 18 38-55 3-20 (42)
58 2l5g_A GPS2 protein, G protein 45.9 26 0.00091 19.5 3.3 28 27-54 4-31 (38)
59 2cqn_A Formin-binding protein 45.7 45 0.0015 21.3 5.0 22 7-28 8-30 (77)
60 4go7_X Aspartokinase; transfer 45.1 94 0.0032 23.2 7.8 39 71-110 29-68 (200)
61 2rrl_A FLIK, flagellar HOOK-le 45.0 46 0.0016 24.6 5.6 79 36-114 67-153 (169)
62 1xkm_B Distinctin chain B; por 44.5 24 0.00084 17.6 2.7 19 31-49 4-22 (26)
63 1j8b_A YBAB; hypothetical prot 43.5 33 0.0011 23.5 4.3 49 35-84 12-60 (112)
64 3luy_A Probable chorismate mut 43.1 1.3E+02 0.0045 24.3 9.8 53 86-146 217-273 (329)
65 2jqq_A Conserved oligomeric go 40.5 9.9 0.00034 29.0 1.3 46 7-52 52-97 (204)
66 2lqj_A Mg2+ transport protein; 40.4 76 0.0026 20.8 6.3 63 77-145 8-73 (94)
67 3ab4_A Aspartokinase; aspartat 39.0 1.6E+02 0.0055 24.1 10.1 43 71-114 258-301 (421)
68 1pyi_A Protein (pyrimidine pat 38.7 22 0.00075 22.9 2.7 22 37-58 47-68 (96)
69 3ab4_A Aspartokinase; aspartat 38.6 1.6E+02 0.0056 24.1 9.0 66 71-148 338-406 (421)
70 2akf_A Coronin-1A; coiled coil 38.5 24 0.00083 18.7 2.2 15 39-53 14-28 (32)
71 3f42_A Protein HP0035; helicob 35.7 50 0.0017 22.1 4.1 19 40-58 12-30 (99)
72 1phz_A Protein (phenylalanine 35.7 87 0.003 26.5 6.5 38 78-116 35-72 (429)
73 2dnr_A Synaptojanin-1; RRM dom 34.5 61 0.0021 21.4 4.4 38 76-115 8-51 (91)
74 1pd7_B MAD1; PAH2, SIN3, eukar 34.2 50 0.0017 16.9 3.1 20 27-46 2-21 (26)
75 2dgc_A Protein (GCN4); basic d 33.2 24 0.00083 21.7 2.1 20 37-56 29-48 (63)
76 1g1e_B SIN3A; four-helix bundl 32.9 27 0.00091 23.0 2.3 16 33-48 10-25 (89)
77 3k5p_A D-3-phosphoglycerate de 32.5 86 0.0029 26.2 5.9 50 66-116 332-381 (416)
78 3coq_A Regulatory protein GAL4 31.6 28 0.00095 21.9 2.2 22 37-58 44-65 (89)
79 2acm_A Mucin-1; auto-catalytic 30.9 21 0.00072 22.2 1.4 23 31-53 25-48 (66)
80 1e91_A Paired amphipathic heli 30.8 31 0.001 22.4 2.3 17 32-48 6-22 (85)
81 3l76_A Aspartokinase; alloster 30.4 2.7E+02 0.0092 24.2 9.0 69 69-149 347-418 (600)
82 3mtj_A Homoserine dehydrogenas 30.1 54 0.0018 27.7 4.3 33 77-110 359-391 (444)
83 1jnm_A Proto-oncogene C-JUN; B 29.3 31 0.0011 20.9 2.1 19 37-55 21-39 (62)
84 3c1m_A Probable aspartokinase; 29.3 1.9E+02 0.0064 24.3 7.6 68 71-148 398-468 (473)
85 3mah_A Aspartokinase; aspartat 28.9 1.5E+02 0.005 20.6 6.3 67 72-150 83-152 (157)
86 1d66_A Protein (GAL4); protein 27.4 16 0.00055 21.7 0.4 15 37-51 51-65 (66)
87 2jee_A YIIU; FTSZ, septum, coi 26.1 70 0.0024 20.8 3.4 23 33-55 15-37 (81)
88 3i00_A HIP-I, huntingtin-inter 26.0 61 0.0021 22.5 3.3 26 31-56 33-58 (120)
89 1ygy_A PGDH, D-3-phosphoglycer 25.9 3E+02 0.01 23.3 9.5 38 76-114 453-490 (529)
90 3s1t_A Aspartokinase; ACT doma 25.8 1.9E+02 0.0064 20.9 8.7 39 71-110 10-49 (181)
91 3c1m_A Probable aspartokinase; 25.7 2.2E+02 0.0076 23.8 7.4 63 74-147 315-381 (473)
92 2rp4_A Transcription factor P5 25.4 41 0.0014 21.6 2.1 32 68-100 11-43 (76)
93 2czy_A Paired amphipathic heli 25.2 45 0.0015 21.1 2.3 16 33-48 4-19 (77)
94 4dac_A Computationally designe 25.1 69 0.0024 16.2 2.5 18 39-56 9-26 (28)
95 2f05_A Paired amphipathic heli 24.7 44 0.0015 22.7 2.3 17 33-49 7-23 (105)
96 3e1r_A Centrosomal protein of 24.5 71 0.0024 19.4 2.9 22 36-57 32-53 (58)
97 2cdq_A Aspartokinase; aspartat 24.5 2E+02 0.007 24.5 7.0 44 75-120 339-385 (510)
98 1t2k_D Cyclic-AMP-dependent tr 24.0 45 0.0015 20.0 2.1 19 37-55 21-39 (61)
99 1g70_B RSG-1.2 peptide; peptid 23.3 29 0.00099 17.3 0.8 8 3-10 12-19 (26)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.62 E-value=2.2e-16 Score=107.19 Aligned_cols=56 Identities=21% Similarity=0.374 Sum_probs=51.1
Q ss_pred chhhhHHHHHHHhHHHhhcCCC--CCCCcccchHHHHHHHHHHHHHHHHHHHhhhccC
Q 031670 2 SSREQNKAALYEKLMLLRDVTN--STSMNKTSIVVDASKYIEELKQQVETLNQEIGTS 57 (155)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~p--~~k~DKaSIl~dAI~YIk~Lq~~v~~Le~e~~~~ 57 (155)
++||+||.+||+.|..||+++| ..|+||++||.+||+||++|+.+++.|+.+...+
T Consensus 12 ~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L 69 (82)
T 1am9_A 12 AIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL 69 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999954 4899999999999999999999999999876544
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.52 E-value=1.1e-14 Score=98.91 Aligned_cols=55 Identities=18% Similarity=0.351 Sum_probs=49.8
Q ss_pred chhhhHHHHHHHhHHHhhcCCC---CCCCcccchHHHHHHHHHHHHHHHHHHHhhhcc
Q 031670 2 SSREQNKAALYEKLMLLRDVTN---STSMNKTSIVVDASKYIEELKQQVETLNQEIGT 56 (155)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~p---~~k~DKaSIl~dAI~YIk~Lq~~v~~Le~e~~~ 56 (155)
++||+||..||+.|..||+++| ..|++|++||..||+||+.|+.+++.|+.+...
T Consensus 8 ~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~ 65 (83)
T 1nkp_B 8 ALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999965 589999999999999999999999998876554
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.51 E-value=1.2e-14 Score=96.00 Aligned_cols=50 Identities=12% Similarity=0.238 Sum_probs=45.4
Q ss_pred chhhhHHHHHHHhHHHhhcCCC--CCCCcccchHHHHHHHHHHHHHHHHHHH
Q 031670 2 SSREQNKAALYEKLMLLRDVTN--STSMNKTSIVVDASKYIEELKQQVETLN 51 (155)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~p--~~k~DKaSIl~dAI~YIk~Lq~~v~~Le 51 (155)
+.||+||.+||+.|..|++|+| ..|+||++||..||+||+.||.++.=|+
T Consensus 14 ~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 14 KSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4799999999999999999965 5699999999999999999999887654
No 4
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.51 E-value=1.2e-14 Score=98.09 Aligned_cols=56 Identities=18% Similarity=0.332 Sum_probs=51.3
Q ss_pred chhhhHHHHHHHhHHHhhcCCC---CCCCcccchHHHHHHHHHHHHHHHHHHHhhhccC
Q 031670 2 SSREQNKAALYEKLMLLRDVTN---STSMNKTSIVVDASKYIEELKQQVETLNQEIGTS 57 (155)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~p---~~k~DKaSIl~dAI~YIk~Lq~~v~~Le~e~~~~ 57 (155)
++||+||..||+.|..||+++| ..|++|++||..||+||+.|+.+++.|+.+...+
T Consensus 18 ~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 18 ALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999965 3799999999999999999999999999987654
No 5
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.46 E-value=7.5e-14 Score=95.90 Aligned_cols=53 Identities=23% Similarity=0.279 Sum_probs=47.7
Q ss_pred chhhhHHHHHHHhHHHhhcCCC----CCCCcccchHHHHHHHHHHHHHHHHHHHhhh
Q 031670 2 SSREQNKAALYEKLMLLRDVTN----STSMNKTSIVVDASKYIEELKQQVETLNQEI 54 (155)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~p----~~k~DKaSIl~dAI~YIk~Lq~~v~~Le~e~ 54 (155)
++||+||..||+.|..||+++| ..|++|++||.+||+||+.|+.+...+..+.
T Consensus 12 ~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~ 68 (88)
T 1nkp_A 12 VLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE 68 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999966 3699999999999999999999988876643
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.44 E-value=3.1e-14 Score=92.38 Aligned_cols=46 Identities=24% Similarity=0.383 Sum_probs=41.3
Q ss_pred chhhhHHHHHHHhHHHhhcCCC-CC------CCcccchHHHHHHHHHHHHHHH
Q 031670 2 SSREQNKAALYEKLMLLRDVTN-ST------SMNKTSIVVDASKYIEELKQQV 47 (155)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~p-~~------k~DKaSIl~dAI~YIk~Lq~~v 47 (155)
++||+||.+||+.|..|++++| .. |+||++||.+||+||+.||++.
T Consensus 11 ~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 11 EVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999965 32 7899999999999999999764
No 7
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.44 E-value=9.9e-14 Score=100.09 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=48.0
Q ss_pred chhhhHHHHHHHhHHHhhcCCC-C----CCCcccchHHHHHHHHHHHHHHHHHHHhhh
Q 031670 2 SSREQNKAALYEKLMLLRDVTN-S----TSMNKTSIVVDASKYIEELKQQVETLNQEI 54 (155)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~p-~----~k~DKaSIl~dAI~YIk~Lq~~v~~Le~e~ 54 (155)
++||+||.+||+.|..|++++| . .|+||++||..||+||+.||.+++.|+.+.
T Consensus 33 ~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 33 LIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999966 3 378899999999999999999999998753
No 8
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.42 E-value=8.2e-14 Score=90.12 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=41.5
Q ss_pred chhhhHHHHHHHhHHHhhcCCC--------CCCCcccchHHHHHHHHHHHHHHH
Q 031670 2 SSREQNKAALYEKLMLLRDVTN--------STSMNKTSIVVDASKYIEELKQQV 47 (155)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~p--------~~k~DKaSIl~dAI~YIk~Lq~~v 47 (155)
++||+||.+||..|..|++|+| .+|.+||+||..||+||++||+++
T Consensus 8 ~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 8 HAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp GGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999966 246679999999999999999865
No 9
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.41 E-value=4.6e-14 Score=93.81 Aligned_cols=44 Identities=11% Similarity=0.186 Sum_probs=40.2
Q ss_pred chhhhHHHHHHHhHHHhhcCCC-----CCCCcccchHHHHHHHHHHHHH
Q 031670 2 SSREQNKAALYEKLMLLRDVTN-----STSMNKTSIVVDASKYIEELKQ 45 (155)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~p-----~~k~DKaSIl~dAI~YIk~Lq~ 45 (155)
.+||+||++||+.|..|++|+| .+|+|||+||..||+||+.|+-
T Consensus 15 ~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 15 QIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999966 2799999999999999999873
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.35 E-value=9.5e-13 Score=88.87 Aligned_cols=55 Identities=18% Similarity=0.206 Sum_probs=49.1
Q ss_pred chhhhHHHHHHHhHHHhhcCCC----CCCCcccchHHHHHHHHHHHHHHHHHHHhhhcc
Q 031670 2 SSREQNKAALYEKLMLLRDVTN----STSMNKTSIVVDASKYIEELKQQVETLNQEIGT 56 (155)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~p----~~k~DKaSIl~dAI~YIk~Lq~~v~~Le~e~~~ 56 (155)
..||+||..||+.|..||+++| .+|+.|++||..|++||+.|+.+.+.|..+...
T Consensus 7 ~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~ 65 (80)
T 1nlw_A 7 EMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQ 65 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999966 368889999999999999999999999876543
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.26 E-value=1.2e-12 Score=87.56 Aligned_cols=51 Identities=22% Similarity=0.206 Sum_probs=43.8
Q ss_pred chhhhHHHHHHHhHHHhhcCCC-C---CCC-cccchHHHHHHHHHHHHHHHHHHHh
Q 031670 2 SSREQNKAALYEKLMLLRDVTN-S---TSM-NKTSIVVDASKYIEELKQQVETLNQ 52 (155)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~p-~---~k~-DKaSIl~dAI~YIk~Lq~~v~~Le~ 52 (155)
+.||+||..||+.|..||.++| . .|. .|.+||..||+||+.|++++++++.
T Consensus 11 ~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 11 ALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999965 3 333 4667999999999999999998764
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.05 E-value=7.9e-11 Score=77.09 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=41.9
Q ss_pred chhhhHHHHHHHhHHHhhcCCC---CCCCcccchHHHHHHHHHHHHHHHH
Q 031670 2 SSREQNKAALYEKLMLLRDVTN---STSMNKTSIVVDASKYIEELKQQVE 48 (155)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~p---~~k~DKaSIl~dAI~YIk~Lq~~v~ 48 (155)
..||+|+..||+.|..||.++| ..|+.|+.||..||+||..|++.++
T Consensus 18 ~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 18 MRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 3699999999999999999965 4789999999999999999998653
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.01 E-value=2.6e-10 Score=72.89 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=41.6
Q ss_pred hhhhHHHHHHHhHHHhhcCCC----CCCCcccchHHHHHHHHHHHHHHHH
Q 031670 3 SREQNKAALYEKLMLLRDVTN----STSMNKTSIVVDASKYIEELKQQVE 48 (155)
Q Consensus 3 sER~RR~kln~~~~~LRsl~p----~~k~DKaSIl~dAI~YIk~Lq~~v~ 48 (155)
.||+|+..||+-|..||.++| ..|..|..+|..||+||..|++.++
T Consensus 9 rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 9 RERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999955 4688999999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.88 E-value=1.2e-09 Score=90.79 Aligned_cols=45 Identities=11% Similarity=0.268 Sum_probs=41.1
Q ss_pred chhhhHHHHHHHhHHHhhcCCC--CCCCcccchHHHHHHHHHHHHHH
Q 031670 2 SSREQNKAALYEKLMLLRDVTN--STSMNKTSIVVDASKYIEELKQQ 46 (155)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~p--~~k~DKaSIl~dAI~YIk~Lq~~ 46 (155)
++||+||++||..|..|++|+| .+|+||+|||..||.||+.|+..
T Consensus 18 ~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 18 KSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999999965 67999999999999999999864
No 15
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.72 E-value=2.9e-09 Score=69.34 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=38.3
Q ss_pred hhhhHHHHHHHhHHHhhcCCC----CCCCcccchHHHHHHHHHHHHH
Q 031670 3 SREQNKAALYEKLMLLRDVTN----STSMNKTSIVVDASKYIEELKQ 45 (155)
Q Consensus 3 sER~RR~kln~~~~~LRsl~p----~~k~DKaSIl~dAI~YIk~Lq~ 45 (155)
.||+|+..||+-|..||.++| -+|+.|..+|.-||+||..||.
T Consensus 21 rER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 21 EPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 378888999999999999965 4688999999999999999984
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.67 E-value=8.2e-09 Score=86.71 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=41.1
Q ss_pred chhhhHHHHHHHhHHHhhcCCC-----CCCCcccchHHHHHHHHHHHHHH
Q 031670 2 SSREQNKAALYEKLMLLRDVTN-----STSMNKTSIVVDASKYIEELKQQ 46 (155)
Q Consensus 2 ~sER~RR~kln~~~~~LRsl~p-----~~k~DKaSIl~dAI~YIk~Lq~~ 46 (155)
.+||+||++||..|..|++|+| ..|+||+|||..||.|||.|+..
T Consensus 19 ~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 19 QIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred chhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 3799999999999999999965 58999999999999999999843
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.22 E-value=1.4e-06 Score=58.69 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=39.7
Q ss_pred HHHHHHhHHHhhcCCC-C----CCCcccchHHHHHHHHHHHHHHHHHHHhh
Q 031670 8 KAALYEKLMLLRDVTN-S----TSMNKTSIVVDASKYIEELKQQVETLNQE 53 (155)
Q Consensus 8 R~kln~~~~~LRsl~p-~----~k~DKaSIl~dAI~YIk~Lq~~v~~Le~e 53 (155)
|..||+++..|..|+| + .|..|.+||.-|++||+.||+..+.+..+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999965 2 46899999999999999999988777653
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.97 E-value=7.7e-06 Score=56.63 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=40.0
Q ss_pred hhhHHHHHHHhHHHhhcCCC----CCCCcccchHHHHHHHHHHHHHHHHHH
Q 031670 4 REQNKAALYEKLMLLRDVTN----STSMNKTSIVVDASKYIEELKQQVETL 50 (155)
Q Consensus 4 ER~RR~kln~~~~~LRsl~p----~~k~DKaSIl~dAI~YIk~Lq~~v~~L 50 (155)
||.|=..+|+-|..||.++| -+|..|.-+|.-||+||..|+.-+++-
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~ 83 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSH 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666889999999999954 468899999999999999999887653
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.21 E-value=0.0084 Score=39.34 Aligned_cols=67 Identities=21% Similarity=0.231 Sum_probs=52.7
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEecccccCCCCCCCHHHHHHHHHHHHHh
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKN 149 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~ 149 (155)
.+.|+|.|+++ ||++.+|...|-+.|.++.+.+..+.++ |.+...+ +.. + ..+.+.+...|......
T Consensus 5 ~~~l~v~~~Dr-pGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v-~~~---~-~~~l~~l~~~L~~~~~~ 72 (91)
T 1zpv_A 5 KAIITVVGKDK-SGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVV-SSD---E-KQDFTYLRNEFEAFGQT 72 (91)
T ss_dssp EEEEEEEESCC-TTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEE-EES---S-CCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCC-CCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEE-EeC---C-CCCHHHHHHHHHHHHHH
Confidence 37899999999 9999999999999999999999888766 4554433 321 2 45788899888766544
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.73 E-value=0.011 Score=44.40 Aligned_cols=66 Identities=14% Similarity=0.193 Sum_probs=50.8
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEecccccCCCCCCCHHHHHHHHHHHHHh
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKN 149 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~ 149 (155)
.+.|.|.|+++ ||++..|...|...|+++..+++.+..| |.+...+ ... . .+.+.++..|......
T Consensus 6 ~~~itv~~~Dr-pGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v-~~~---~--~~~~~l~~~L~~~~~~ 72 (192)
T 1u8s_A 6 HLVITAVGTDR-PGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLI-SGS---P--SNITRVETTLPLLGQQ 72 (192)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEE-EEC---H--HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCC-CcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEE-ecC---C--CCHHHHHHHHHHHHHh
Confidence 47899999999 9999999999999999999999988765 6664333 221 1 2566777777766543
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.53 E-value=0.011 Score=44.90 Aligned_cols=46 Identities=17% Similarity=0.347 Sum_probs=40.2
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEe
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVG 123 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~ 123 (155)
.+.|.|.|+.+ ||++..|...|..+|++++.+++.+..| |.+...+
T Consensus 5 ~~~ltv~~~Dr-pGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v 51 (195)
T 2nyi_A 5 SFVVSVAGSDR-VGIVHDFSWALKNISANVESSRMACLGGDFAMIVLV 51 (195)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEeCCC-CcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEE
Confidence 37899999999 9999999999999999999999998755 7774433
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.36 E-value=0.022 Score=43.07 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=52.8
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC------C-eEEEEEecccccCCCCCCCHHHHHHHHHHHHHh
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD------R-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKN 149 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~------~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~ 149 (155)
.+.|+|.|+.+ ||++..|-..|-++|+++..++..+.+ + |.+....... ...+ +.++++|......
T Consensus 93 ~~iltv~g~Dr-pGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~-----~~~~-~~l~~~l~~~a~~ 165 (195)
T 2nyi_A 93 EYELYVEGPDS-EGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP-----FPLY-QEVVTALSRVEEE 165 (195)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE-----GGGH-HHHHHHHHHHHHH
T ss_pred EEEEEEEeCCC-cCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC-----CCcc-HHHHHHHHHHHHH
Confidence 48899999999 999999999999999999999999875 2 6666554221 1235 7888888876655
Q ss_pred h
Q 031670 150 V 150 (155)
Q Consensus 150 ~ 150 (155)
+
T Consensus 166 l 166 (195)
T 2nyi_A 166 F 166 (195)
T ss_dssp H
T ss_pred c
Confidence 4
No 23
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=96.01 E-value=0.095 Score=33.60 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=35.3
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~ 116 (155)
+.|+|.++++ ||+|.+|..+|.+.|+++.+.+..+.++
T Consensus 6 ~~l~v~~~Dr-~G~L~~I~~~la~~~inI~~i~~~~~~~ 43 (88)
T 2ko1_A 6 AGIRIVGEDK-NGMTNQITGVISKFDTNIRTIVLNAKDG 43 (88)
T ss_dssp EEEEEEEECC-TTHHHHHHHHHTTSSSCEEEEEEEECSS
T ss_pred EEEEEEEECC-CcHHHHHHHHHHHCCCCeEEEEEEEcCC
Confidence 6789999999 9999999999999999999999988766
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.95 E-value=0.086 Score=39.36 Aligned_cols=68 Identities=10% Similarity=0.116 Sum_probs=54.2
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC---------CeEEEEEecccccCCCCCCCHHHHHHHHHHHH
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD---------RFQLEAVGGDHIEGHADGIDAQVVKEAVLQAI 147 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~---------~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai 147 (155)
.+.|.|.|+.+ ||++..|...|.+.|+++..+...+.+ -|.+..... . ....+.+.++..|....
T Consensus 93 ~~~l~v~~~D~-~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~-~----~~~~~~~~l~~~l~~~~ 166 (192)
T 1u8s_A 93 TVEVYVESDDK-LGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISAR-V----DSGCNLMQLQEEFDALC 166 (192)
T ss_dssp EEEEEEEESCC-TTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEE-E----CTTSCHHHHHHHHHHHH
T ss_pred eEEEEEEeCCC-ccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEe-C----CCCCCHHHHHHHHHHHH
Confidence 47899999999 999999999999999999999988764 266655432 1 22458899999998776
Q ss_pred Hhh
Q 031670 148 KNV 150 (155)
Q Consensus 148 ~~~ 150 (155)
..+
T Consensus 167 ~~~ 169 (192)
T 1u8s_A 167 TAL 169 (192)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 25
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=95.14 E-value=0.07 Score=44.24 Aligned_cols=68 Identities=22% Similarity=0.291 Sum_probs=52.0
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEecccccCCCCCCCHHHHHHHHHHHHHh
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKN 149 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~ 149 (155)
.+.|++.|+++ ||+...|...|-+.|.+++.++-...+| |++...+.-. +...+.++++.+|......
T Consensus 12 ~~~lt~~g~Dr-~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~----~~~~~~~~l~~~l~~~~~~ 80 (415)
T 3p96_A 12 SVLITVTGVDQ-PGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCP----ADVADGPALRHDVEAAIRK 80 (415)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEEC----HHHHTSHHHHHHHHHHHHH
T ss_pred eEEEEEEcCCC-CCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEec----CCcCCHHHHHHHHHHHHHH
Confidence 47899999999 9999999999999999999999888777 6666544221 1123457788877655443
No 26
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=95.11 E-value=0.25 Score=40.21 Aligned_cols=69 Identities=12% Similarity=0.079 Sum_probs=53.2
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee--CC-eEEEEEecccccCCCCCCCHHHHHHHHHHHHHhh
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS--DR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKNV 150 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~--~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~~ 150 (155)
.+.+++.|+++ +|++..|-..|-+.|.++..++-... .| |.+.+..... +...+.+++++++......+
T Consensus 22 ~~iLtv~c~Dr-pGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~----~~~~~~~~L~~~l~~la~~l 93 (302)
T 3o1l_A 22 TFRLVIACPDR-VGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRAD----TLPFDLDGFREAFTPIAEEF 93 (302)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGG----GSSSCHHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCC-CCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecC----CCCCCHHHHHHHHHHHHHHh
Confidence 47899999999 99999999999999999999988765 33 6666544321 22468899999886654443
No 27
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=94.47 E-value=0.52 Score=37.96 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=52.9
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee--CC-eEEEEEecccccCCCCCCCHHHHHHHHHHHHHhh
Q 031670 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS--DR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKNV 150 (155)
Q Consensus 76 ~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~--~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~~ 150 (155)
..+.+++.|+++ +|++..|-..|-+.|.++..++-.+. +| |.+.+... . .+...+.+++++++...-..+
T Consensus 5 ~~~iLtv~g~Dr-pGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~-~---~~~~~~~~~L~~~f~~la~~~ 77 (288)
T 3obi_A 5 HQYVLTLSCPDR-AGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFN-A---AAKVIPLASLRTGFGVIAAKF 77 (288)
T ss_dssp CEEEEEEEEECC-TTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEE-E---SSCCCCHHHHHHHHHHHHHHT
T ss_pred CeEEEEEECCCC-CCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEE-c---CCCCCCHHHHHHHHHHHHHHc
Confidence 357899999999 99999999999999999999887642 33 66665442 2 122468899999887654443
No 28
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=94.34 E-value=0.4 Score=38.62 Aligned_cols=68 Identities=7% Similarity=-0.001 Sum_probs=52.2
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee--CC-eEEEEEecccccCCCCCCCHHHHHHHHHHHHHh
Q 031670 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS--DR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKN 149 (155)
Q Consensus 76 ~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~--~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~ 149 (155)
..+.+++.|+++ +|++..|-..|-+.|.++..++-.+. .| |.+.+.... . + ..+.+++++++...-..
T Consensus 7 ~~~vLtv~c~Dr-pGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~---~-~~~~~~L~~~f~~la~~ 77 (286)
T 3n0v_A 7 DTWILTADCPSM-LGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQ-P---D-DFDEAGFRAGLAERSEA 77 (286)
T ss_dssp CCEEEEEEEECC-TTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC-C---S-SCCHHHHHHHHHHHHGG
T ss_pred CcEEEEEEeCCC-CCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEec-C---C-CCCHHHHHHHHHHHHHH
Confidence 347899999999 99999999999999999999887743 33 666554422 1 2 47889999988765443
No 29
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=93.76 E-value=0.49 Score=38.23 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=51.7
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee--CC-eEEEEEecccccCCCCCCCHHHHHHHHHHHHHhh
Q 031670 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS--DR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKNV 150 (155)
Q Consensus 76 ~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~--~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~~ 150 (155)
..+.+++.|+++ +|++..|-..|-+.|.++..++-.+. .| |.+.+...... .+...+.+++++++......+
T Consensus 9 ~~~vLtv~c~Dr-~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~~~~~L~~~f~~la~~~ 83 (292)
T 3lou_A 9 HQFVLTLSCPSA-AGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATD--DADALRVDALRREFEPIAERF 83 (292)
T ss_dssp CEEEEEEEEESC-SCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC------CCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEcCCC-CCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccC--cccCCCHHHHHHHHHHHHHhc
Confidence 357899999999 99999999999999999999988742 23 66655432110 012467889998886654443
No 30
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=93.12 E-value=0.21 Score=35.73 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=33.5
Q ss_pred EEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 79 LINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 79 ~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
.|+|.|.++ +|++.+|+.+|.+.++++..+++.+.+
T Consensus 2 ~~~v~~~dr-~g~l~~i~~~l~~~~~ni~~~~~~~~g 37 (190)
T 2jhe_A 2 RLEVFCEDR-LGLTRELLDLLVLRGIDLRGIEIDPIG 37 (190)
T ss_dssp EEEEEECSC-TTHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred EEEEEEecC-CcHHHHHHHHHHHcCCCeEEEEEecCC
Confidence 589999999 999999999999999999999997763
No 31
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=91.94 E-value=1.1 Score=35.92 Aligned_cols=67 Identities=9% Similarity=0.150 Sum_probs=47.3
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee--CC-eEEEEEecccccCCCCCCCHHHHHHHHHHHHHh
Q 031670 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS--DR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQAIKN 149 (155)
Q Consensus 76 ~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~--~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~~ 149 (155)
..+.+++.|+++ +|++..|-..|-+.|.++..++-.+. .| |.+.+..... . .+.+++++++......
T Consensus 6 ~~~vLtv~c~Dr-~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~----~--~~~~~L~~~f~~la~~ 75 (287)
T 3nrb_A 6 NQYVLSLACQDA-PGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIP----V--AGVNDFNSAFGKVVEK 75 (287)
T ss_dssp TEEEEEEEEECC-TTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC----C-----CHHHHHHHHHHGG
T ss_pred CeEEEEEECCCC-CCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcC----C--CCHHHHHHHHHHHHHH
Confidence 358899999999 99999999999999999999987642 33 6665543221 1 2334777777654443
No 32
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=90.32 E-value=1 Score=33.39 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=33.7
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
..|.|.++++ ||+|.+|...|...|+++.+.++.+..
T Consensus 4 ~~IsV~v~Nr-pGvLarIt~lfs~rg~NI~Sl~v~~t~ 40 (164)
T 2f1f_A 4 RILSVLLENE-SGALSRVIGLFSQRGYNIESLTVAPTD 40 (164)
T ss_dssp EEEEEEEECC-TTHHHHHHHHHHTTTCCCSEEEEEECS
T ss_pred EEEEEEEeCC-CcHHHHHHHHHHHCCCCeeeceeeecC
Confidence 5688999999 999999999999999999999988654
No 33
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=88.00 E-value=3.1 Score=30.82 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=33.7
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
..|.|..+++ ||.|.+|...|...|+++.+.++.+..
T Consensus 5 ~~IsV~veNr-pGvL~rI~~lfs~rg~NI~Sl~v~~t~ 41 (165)
T 2pc6_A 5 HIISLLMENE-AGALSRVAGLFSARGYNIESLSVAPTE 41 (165)
T ss_dssp EEEEEEEECS-TTHHHHHHHHHHHHTCCCCEEEEEECS
T ss_pred EEEEEEEeCC-CcHHHHHHHHHHHCCCcEEEEEEEecC
Confidence 5688999999 999999999999999999999998654
No 34
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=85.68 E-value=2.9 Score=32.59 Aligned_cols=38 Identities=13% Similarity=0.053 Sum_probs=31.1
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
.+.|.|.+.++ +|+|.+|+..|-+.+.++.+.+.++..
T Consensus 4 ~VtL~I~a~DR-pGLLsDIt~vLAe~kiNIltIn~~~~~ 41 (223)
T 1y7p_A 4 LRGLRIIAENK-IGVLRDLTTIIAEEGGNITFAQTFLIK 41 (223)
T ss_dssp CEEEEEEEECC-TTHHHHHHHHCC----CEEEEEEEECC
T ss_pred eEEEEEEEcCC-CCHHHHHHHHHHHcCCCceEEEEEccc
Confidence 37789999999 999999999999999999999998864
No 35
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=84.05 E-value=3.6 Score=31.37 Aligned_cols=38 Identities=18% Similarity=0.395 Sum_probs=33.9
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~ 116 (155)
..|.|..+++ ||.|.+|...|...|+++.+.++....+
T Consensus 30 ~~LsVlVeN~-pGvLaRItglfsrRG~NI~SLtV~~ted 67 (193)
T 2fgc_A 30 HLVSMLVHNK-PGVMRKVANLFARRGFNISSITVGESET 67 (193)
T ss_dssp EEEEEEEECC-TTHHHHHHHHHHTTTCEEEEEEEEECSS
T ss_pred EEEEEEECCC-ChHHHHHHHHHHHCCceEEEEEeeccCC
Confidence 5788899999 9999999999999999999999876543
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=76.20 E-value=17 Score=25.18 Aligned_cols=57 Identities=12% Similarity=0.063 Sum_probs=36.7
Q ss_pred EEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHHHHH
Q 031670 80 INVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQA 146 (155)
Q Consensus 80 i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~a 146 (155)
+-+.-+.+ ||.+.+++.+|.+.|+++.....+..++-.. +.. .. -+.+...++|+++
T Consensus 75 v~v~~~d~-pGvla~i~~~L~~~~InI~~~~~~~~~~~~~-~~i-~~-------~d~~~A~~~L~~~ 131 (144)
T 2f06_A 75 VGISCPNV-PGALAKVLGFLSAEGVFIEYMYSFANNNVAN-VVI-RP-------SNMDKCIEVLKEK 131 (144)
T ss_dssp EEEEEESS-TTHHHHHHHHHHHTTCCEEEEEEEEETTEEE-EEE-EE-------SCHHHHHHHHHHT
T ss_pred EEEEeCCC-CcHHHHHHHHHHHCCCCEEEEEEEccCCcEE-EEE-Ee-------CCHHHHHHHHHHc
Confidence 44566789 9999999999999999997655442333111 111 11 1566666666653
No 37
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=74.33 E-value=21 Score=25.53 Aligned_cols=39 Identities=5% Similarity=0.134 Sum_probs=30.9
Q ss_pred EEEeCCeEEEEEEecc---CCCCHHHHHHHHHHhCCCeEEEEE
Q 031670 71 VETLEKGFLINVYLEK---NCSGLLVSVLEAFEDLGLEVLDAR 110 (155)
Q Consensus 71 V~~~~~~~~i~I~c~~---~~~g~l~~il~aLe~l~L~V~~a~ 110 (155)
+...++-..|.|.... . ||.+.+++++|.+.|++|...+
T Consensus 97 i~~~~~~a~vsvvG~~m~~~-~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSH-VGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp EEEESSEEEEEEECSSCTTC-CCHHHHHHHHHHHTTCCCCEEE
T ss_pred EEecCCEEEEEEECCCcCCC-cCHHHHHHHHHHHCCCcEEEEE
Confidence 3444555778887765 6 9999999999999999998854
No 38
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=68.48 E-value=27 Score=27.85 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=32.0
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~ 116 (155)
..|-+..+++ ||.|.++|..|...|++......-+..+
T Consensus 201 tsl~f~~~~~-pGaL~~~L~~Fa~~gINLtkIESRP~~~ 238 (283)
T 2qmx_A 201 TSIVFALPNE-QGSLFRALATFALRGIDLTKIESRPSRK 238 (283)
T ss_dssp EEEEEEEECC-TTHHHHHHHHHHTTTCCEEEEEEEECSS
T ss_pred EEEEEEcCCC-CchHHHHHHHHHHcCCCeeEEEeeEcCC
Confidence 3444555788 9999999999999999999999998754
No 39
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=67.63 E-value=27 Score=24.02 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=31.6
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~ 116 (155)
..|.|..+.+ ||.+.++...|.+.|+++....+....+
T Consensus 7 ~~i~v~v~d~-~G~l~~i~~~la~~~inI~~i~~~~~~~ 44 (144)
T 2f06_A 7 KQLSIFLENK-SGRLTEVTEVLAKENINLSALCIAENAD 44 (144)
T ss_dssp EEEEEEECSS-SSHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred EEEEEEecCC-CcHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 3577788999 9999999999999999999877654444
No 40
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=67.21 E-value=32 Score=27.12 Aligned_cols=61 Identities=13% Similarity=0.154 Sum_probs=43.1
Q ss_pred eEEEEEEe---ccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC----eEEEEEecccccCCCCCCCHHHHHHHHHHH
Q 031670 77 GFLINVYL---EKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR----FQLEAVGGDHIEGHADGIDAQVVKEAVLQA 146 (155)
Q Consensus 77 ~~~i~I~c---~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~----~~l~~~~~~~~~~~~~~~~~~~vk~~l~~a 146 (155)
...|-+.. +++ ||.|.++|..|...|++.....+-+..+ +.+.+-+. . .+...++.+|...
T Consensus 186 ktsl~f~~~~~~~~-pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~-------~~d~~v~~aL~~L 253 (267)
T 2qmw_A 186 ATSLMFLITPMHDK-PGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-S-------AITTDIKKVIAIL 253 (267)
T ss_dssp CSEEEEEEEESSCC-TTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-C-------CSCHHHHHHHHHH
T ss_pred eEEEEEEcCCCCCC-cChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-c-------CCcHHHHHHHHHH
Confidence 35566666 688 9999999999999999999999988753 44443332 2 2335566666543
No 41
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=66.79 E-value=11 Score=23.13 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=25.9
Q ss_pred hhhHHHHHHHhHHHhhcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHhhhc
Q 031670 4 REQNKAALYEKLMLLRDVTNSTSMNKTSIVVDASKYIEELKQQVETLNQEIG 55 (155)
Q Consensus 4 ER~RR~kln~~~~~LRsl~p~~k~DKaSIl~dAI~YIk~Lq~~v~~Le~e~~ 55 (155)
||++|.+..++..+-|+= .---.|+.+|+.++..|+.+..
T Consensus 1 Ekr~rrrerNR~AA~rcR------------~rKk~~~~~Le~~v~~L~~~n~ 40 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR------------NRRRELTDTLQAETDQLEDEKS 40 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888887762 1234667777777777766433
No 42
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=66.74 E-value=4.4 Score=25.01 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhhccCc
Q 031670 37 SKYIEELKQQVETLNQEIGTSE 58 (155)
Q Consensus 37 I~YIk~Lq~~v~~Le~e~~~~~ 58 (155)
-.||..|+.+|..|+..+..+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999887664
No 43
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=66.37 E-value=33 Score=24.46 Aligned_cols=67 Identities=12% Similarity=0.040 Sum_probs=43.9
Q ss_pred EEEEeCCeEEEEEEecc---CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHHHHH
Q 031670 70 TVETLEKGFLINVYLEK---NCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQA 146 (155)
Q Consensus 70 ~V~~~~~~~~i~I~c~~---~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~a 146 (155)
.+...++-..|.|.... . ||.+.+++++|.+-|++|...+ +++. .+.+.+.+. +.+..-++|+++
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~-~Gv~a~~f~aL~~~~InI~~is--~Se~-~is~vv~~~--------d~~~Av~~Lh~~ 155 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLAST-PEVPAKMFQAVASTGANIEMIA--TSEV-RISVIIPAE--------YAEAALRAVHQA 155 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGS-THHHHHHHHHHHHTTCCCCEEE--ECSS-EEEEEEEGG--------GHHHHHHHHHHH
T ss_pred cEEEeCCEEEEEEECCCcccC-cCHHHHHHHHHHHCCCCEEEEE--ccCC-EEEEEEeHH--------HHHHHHHHHHHH
Confidence 34445556777777754 7 9999999999999999995543 3333 333333222 556666777776
Q ss_pred HH
Q 031670 147 IK 148 (155)
Q Consensus 147 i~ 148 (155)
+.
T Consensus 156 f~ 157 (167)
T 2dt9_A 156 FE 157 (167)
T ss_dssp TC
T ss_pred Hc
Confidence 54
No 44
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=64.57 E-value=30 Score=25.03 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=44.6
Q ss_pred EEEeCCeEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHHHHHH
Q 031670 71 VETLEKGFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQAI 147 (155)
Q Consensus 71 V~~~~~~~~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai 147 (155)
++..++-..|.|... .. ||.+.+++++|.+-|++|.-.+ +++ ..+-+.+ ... +.+...++|++++
T Consensus 89 v~~~~~~a~VsvVG~gm~~~-~Gv~arif~aLa~~~InI~~is--tSe-~~Is~vV-~~~-------d~~~Av~~Lh~~F 156 (178)
T 2dtj_A 89 VLYDDQVGKVSLVGAGMKSH-PGVTAEFMEALRDVNVNIELIS--TSE-IRISVLI-RED-------DLDAAARALHEQF 156 (178)
T ss_dssp EEEESCEEEEEEEEECCTTC-HHHHHHHHHHHHHTTCCCCEEE--EET-TEEEEEE-EGG-------GHHHHHHHHHHHH
T ss_pred EEEeCCeEEEEEEcCCcccC-ccHHHHHHHHHHHCCCCEEEEE--cCC-CeEEEEE-eHH-------HHHHHHHHHHHHH
Confidence 455566688888875 45 7999999999999999998744 333 2222222 221 5666777788776
Q ss_pred H
Q 031670 148 K 148 (155)
Q Consensus 148 ~ 148 (155)
.
T Consensus 157 ~ 157 (178)
T 2dtj_A 157 Q 157 (178)
T ss_dssp T
T ss_pred c
Confidence 4
No 45
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=60.93 E-value=38 Score=24.73 Aligned_cols=66 Identities=12% Similarity=0.117 Sum_probs=43.6
Q ss_pred EEEeCCeEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHHHHHH
Q 031670 71 VETLEKGFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQAI 147 (155)
Q Consensus 71 V~~~~~~~~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai 147 (155)
|+..++-..|.|... .. ||.+.+++++|.+-|++|...+ ++ ...+-+.+.+. +.+..-++|++++
T Consensus 90 v~~~~~va~VsvVG~gm~~~-~Gvaa~~f~aLa~~~InI~~Is--tS-ei~Is~vV~~~--------d~~~Av~aLH~~f 157 (181)
T 3s1t_A 90 LLYDDHIGKVSLIGAGMRSH-PGVTATFCEALAAVGVNIELIS--TS-EIRISVLCRDT--------ELDKAVVALHEAF 157 (181)
T ss_dssp EEEESCEEEEEEEEECCTTC-HHHHHHHHHHHHHTTCCCCEEE--EE-TTEEEEEEEGG--------GHHHHHHHHHHHH
T ss_pred EEEeCCEEEEEEEecccccC-chHHHHHHHHHHHCCCcEEEEE--cC-CCEEEEEEeHH--------HHHHHHHHHHHHH
Confidence 344455567776654 45 8999999999999999988776 33 33333333222 5566677777776
Q ss_pred H
Q 031670 148 K 148 (155)
Q Consensus 148 ~ 148 (155)
.
T Consensus 158 ~ 158 (181)
T 3s1t_A 158 G 158 (181)
T ss_dssp T
T ss_pred c
Confidence 4
No 46
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=59.31 E-value=40 Score=23.98 Aligned_cols=41 Identities=22% Similarity=0.145 Sum_probs=32.6
Q ss_pred EEEeCCeEEEEEEe-ccCCCCHHHHHHHHHHhCCCeEEEEEEE
Q 031670 71 VETLEKGFLINVYL-EKNCSGLLVSVLEAFEDLGLEVLDARVS 112 (155)
Q Consensus 71 V~~~~~~~~i~I~c-~~~~~g~l~~il~aLe~l~L~V~~a~is 112 (155)
|....+-..|.|.. +.+ +|.+.+|+.+|...|+.|.....+
T Consensus 19 Ia~~~~~~~i~v~~~~~~-~G~~~~if~~La~~~Invd~i~~s 60 (167)
T 2re1_A 19 IAFDKNQARINVRGVPDK-PGVAYQILGAVADANIEVDMIIQN 60 (167)
T ss_dssp EEEECCCEEEEEEEEECC-TTHHHHHHHHHHTTTCCCCCEEEC
T ss_pred EEecCCEEEEEEecCCCC-cCHHHHHHHHHHHcCCeEEEEEcC
Confidence 44445568888884 788 999999999999999888776543
No 47
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=59.24 E-value=45 Score=26.91 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=31.8
Q ss_pred EEEEEEec-cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 031670 78 FLINVYLE-KNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (155)
Q Consensus 78 ~~i~I~c~-~~~~g~l~~il~aLe~l~L~V~~a~is~~~~ 116 (155)
..|-+.-+ ++ ||.|.++|..|...|++.....+.+..+
T Consensus 202 TSl~f~~~~~~-pGaL~~~L~~Fa~~gINLtkIESRP~~~ 240 (313)
T 3mwb_A 202 TTVVVPLPEDH-PGALMEILDQFASRGVNLSRIESRPTGQ 240 (313)
T ss_dssp EEEEEECSSCC-TTHHHHHHHHHHTTTCCEEEEEEEECSS
T ss_pred EEEEEEeCCCC-CCHHHHHHHHHHHCCccEEEEEEeecCC
Confidence 45556665 78 9999999999999999999999888643
No 48
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=58.22 E-value=38 Score=24.52 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=31.3
Q ss_pred EEEeCCeEEEEEE-eccCCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 031670 71 VETLEKGFLINVY-LEKNCSGLLVSVLEAFEDLGLEVLDARVSC 113 (155)
Q Consensus 71 V~~~~~~~~i~I~-c~~~~~g~l~~il~aLe~l~L~V~~a~is~ 113 (155)
|....+-..|+|. -+.+ +|.+.+|++.|.+.|++|.-...++
T Consensus 9 Ia~~~~~~~Itv~~~~~~-~G~~a~if~~La~~~InId~i~~s~ 51 (178)
T 2dtj_A 9 VATDKSEAKVTVLGISDK-PGEAAKVFRALADAEINIDMVLQNV 51 (178)
T ss_dssp EEEECSEEEEEEEEEECS-TTHHHHHHHHHHHTTCCCCEEEECC
T ss_pred EEecCCEEEEEEecCCCC-ccHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4444566788884 5778 9999999999999996666554443
No 49
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=57.05 E-value=49 Score=23.47 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=31.4
Q ss_pred EEEeCCeEEEEEEe-ccCCCCHHHHHHHHHHhCCCeEEEEEEE
Q 031670 71 VETLEKGFLINVYL-EKNCSGLLVSVLEAFEDLGLEVLDARVS 112 (155)
Q Consensus 71 V~~~~~~~~i~I~c-~~~~~g~l~~il~aLe~l~L~V~~a~is 112 (155)
|....+-..|.|.. +.+ +|.+.+++.+|.+.|++|.-...+
T Consensus 10 Ia~~~~~a~Itv~g~~~~-~G~~a~if~~La~~~InVd~I~q~ 51 (167)
T 2dt9_A 10 VALDLDHAQIGLIGIPDQ-PGIAAKVFQALAERGIAVDMIIQG 51 (167)
T ss_dssp EEEECSEEEEEEEEEECS-TTHHHHHHHHHHHHTCCCSCEEBC
T ss_pred EEEeCCEEEEEEecCCCC-CCHHHHHHHHHHHcCCcEEEEEcC
Confidence 44455667788776 567 999999999999999888765544
No 50
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=56.17 E-value=5 Score=24.47 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhhccC
Q 031670 37 SKYIEELKQQVETLNQEIGTS 57 (155)
Q Consensus 37 I~YIk~Lq~~v~~Le~e~~~~ 57 (155)
-.||..|+.++..|+..+..+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l 63 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRL 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888776544
No 51
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=55.86 E-value=6.8 Score=24.57 Aligned_cols=22 Identities=14% Similarity=0.437 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhhhccCc
Q 031670 37 SKYIEELKQQVETLNQEIGTSE 58 (155)
Q Consensus 37 I~YIk~Lq~~v~~Le~e~~~~~ 58 (155)
-.||..|+.+|..||..+..+.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999876653
No 52
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=55.00 E-value=7.1 Score=23.54 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 031670 38 KYIEELKQQVETLNQEIGT 56 (155)
Q Consensus 38 ~YIk~Lq~~v~~Le~e~~~ 56 (155)
.|+.+|+.+|..|+.+...
T Consensus 22 ~~~~~LE~~v~~L~~eN~~ 40 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKT 40 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7999999999999887543
No 53
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=53.95 E-value=6.3 Score=22.49 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=10.3
Q ss_pred HHHHHhHHHhhc
Q 031670 9 AALYEKLMLLRD 20 (155)
Q Consensus 9 ~kln~~~~~LRs 20 (155)
+.|..||.+|||
T Consensus 29 ~~MqsRLaALRS 40 (40)
T 2xze_Q 29 EAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC
Confidence 469999999997
No 54
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=52.93 E-value=11 Score=21.29 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 031670 33 VVDASKYIEELKQQVETLNQ 52 (155)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~ 52 (155)
+.+--+||++|+++-.+|+.
T Consensus 5 vkelknyiqeleernaelkn 24 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKN 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHh
Confidence 34556899999988877764
No 55
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=51.60 E-value=11 Score=24.03 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 031670 37 SKYIEELKQQVETLNQEI 54 (155)
Q Consensus 37 I~YIk~Lq~~v~~Le~e~ 54 (155)
-.||++|+.+|.+|+...
T Consensus 28 ~~~i~~LE~~v~~le~~~ 45 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELH 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 479999999999998644
No 56
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=51.40 E-value=30 Score=24.91 Aligned_cols=26 Identities=12% Similarity=0.330 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCc
Q 031670 33 VVDASKYIEELKQQVETLNQEIGTSE 58 (155)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~~~~ 58 (155)
+.+-.+-.+++|++.++++++++..+
T Consensus 43 m~~mmkQAQkmQ~km~k~QeeL~~~e 68 (143)
T 1ybx_A 43 INNLVKQAQKMQRDMERVQEELKEKT 68 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCE
Confidence 34677888889999999999887653
No 57
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=47.84 E-value=9.2 Score=21.97 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 031670 38 KYIEELKQQVETLNQEIG 55 (155)
Q Consensus 38 ~YIk~Lq~~v~~Le~e~~ 55 (155)
.|+-+|+.++.+|+....
T Consensus 3 aYl~eLE~r~k~le~~na 20 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNS 20 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 377777777777776443
No 58
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=45.89 E-value=26 Score=19.52 Aligned_cols=28 Identities=18% Similarity=0.289 Sum_probs=23.9
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHhhh
Q 031670 27 MNKTSIVVDASKYIEELKQQVETLNQEI 54 (155)
Q Consensus 27 ~DKaSIl~dAI~YIk~Lq~~v~~Le~e~ 54 (155)
|.-+.-|+++=.-|..|+.+++.|+.|.
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778999999999999999998874
No 59
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=45.72 E-value=45 Score=21.27 Aligned_cols=22 Identities=9% Similarity=-0.135 Sum_probs=15.4
Q ss_pred HHHHHHHhHHHhhcC-CCCCCCc
Q 031670 7 NKAALYEKLMLLRDV-TNSTSMN 28 (155)
Q Consensus 7 RR~kln~~~~~LRsl-~p~~k~D 28 (155)
.|+...+....|+.. ||++..+
T Consensus 8 ~rrl~~~F~~mLk~~~p~I~~~s 30 (77)
T 2cqn_A 8 MKRKESAFKSMLKQAAPPIELDA 30 (77)
T ss_dssp HHHHHHHHHHHHHTCSSCCCTTC
T ss_pred HHHHHHHHHHHHHhcCCCCCCCC
Confidence 344556788899999 7876543
No 60
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=45.12 E-value=94 Score=23.23 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=31.0
Q ss_pred EEEeCCeEEEEEE-eccCCCCHHHHHHHHHHhCCCeEEEEE
Q 031670 71 VETLEKGFLINVY-LEKNCSGLLVSVLEAFEDLGLEVLDAR 110 (155)
Q Consensus 71 V~~~~~~~~i~I~-c~~~~~g~l~~il~aLe~l~L~V~~a~ 110 (155)
|....+.+.|+|. .+.. ||.+.+|+.+|.+.|++|.-..
T Consensus 29 Ia~~~~~a~Iti~g~~~~-pG~aa~IF~~La~~~InVDmI~ 68 (200)
T 4go7_X 29 VAHDRSEAKVTIVGLPDI-PGYAAKVFRAVADADVNIDMVL 68 (200)
T ss_dssp EEEECSEEEEEEEEEECS-TTHHHHHHHHHHHTTCCCCCEE
T ss_pred EEccCCEEEEEEecCCCC-ccHHHHHHHHHHHhCcceEEEe
Confidence 4555566888876 4778 9999999999999998876653
No 61
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=44.96 E-value=46 Score=24.59 Aligned_cols=79 Identities=9% Similarity=0.160 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHhh-hccCccccCCCCCC--eEEEEEeCCeEEEEEEeccCC-----CCHHHHHHHHHHhCCCeEE
Q 031670 36 ASKYIEELKQQVETLNQE-IGTSEASTVENSLP--VVTVETLEKGFLINVYLEKNC-----SGLLVSVLEAFEDLGLEVL 107 (155)
Q Consensus 36 AI~YIk~Lq~~v~~Le~e-~~~~~~~~~~~~~p--~V~V~~~~~~~~i~I~c~~~~-----~g~l~~il~aLe~l~L~V~ 107 (155)
...|.++|-+++.-+-.. ....+-.-++...- +|.+++.++.+.+.+..+... .+-+.++-++|.+-||.+.
T Consensus 67 ~~~w~qqL~qqI~~~~~~g~q~a~IrL~PpeLG~l~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~ 146 (169)
T 2rrl_A 67 SHEWQQTFSQQVMLFTRQGQQSAQLRLHPEELGQVHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLG 146 (169)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCEEEECCSSGGGCCEEEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEE
T ss_pred CHHHHHHHHHHHHHHHhCCceEEEEEECccccCcEEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence 358888888888776443 11111100111111 466777788899999998752 3457788889999999999
Q ss_pred EEEEEee
Q 031670 108 DARVSCS 114 (155)
Q Consensus 108 ~a~is~~ 114 (155)
+++|+..
T Consensus 147 ~v~Vs~~ 153 (169)
T 2rrl_A 147 QSSISSE 153 (169)
T ss_dssp EEEEESS
T ss_pred eEEEecC
Confidence 9999864
No 62
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=44.47 E-value=24 Score=17.61 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=15.1
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 031670 31 SIVVDASKYIEELKQQVET 49 (155)
Q Consensus 31 SIl~dAI~YIk~Lq~~v~~ 49 (155)
|-|-+|-+|+.+|.+++..
T Consensus 4 sgliearkyleqlhrklkn 22 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5577899999999888753
No 63
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=43.53 E-value=33 Score=23.48 Aligned_cols=49 Identities=10% Similarity=0.158 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCccccCCCCCCeEEEEEeCCeEEEEEEe
Q 031670 35 DASKYIEELKQQVETLNQEIGTSEASTVENSLPVVTVETLEKGFLINVYL 84 (155)
Q Consensus 35 dAI~YIk~Lq~~v~~Le~e~~~~~~~~~~~~~p~V~V~~~~~~~~i~I~c 84 (155)
+-.+-.+++|++.++++++++..+.... ..---|+|.+.+++-.+.|.-
T Consensus 12 ~mmkqaq~mQ~~m~~~QeeL~~~~v~g~-sggG~V~Vt~~G~~ev~~i~I 60 (112)
T 1j8b_A 12 GLMKQAQQMQEKMQKMQEEIAQLEVTGE-SGAGLVKITINGAHNCRRIDI 60 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSEEEEE-EGGGTEEEEEETTCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhccEEEEE-ECCCEEEEEEecCceEEEEEE
Confidence 4467788999999999999876542110 000126666665544433333
No 64
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=43.09 E-value=1.3e+02 Score=24.31 Aligned_cols=53 Identities=15% Similarity=0.265 Sum_probs=37.7
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC----eEEEEEecccccCCCCCCCHHHHHHHHHHH
Q 031670 86 KNCSGLLVSVLEAFEDLGLEVLDARVSCSDR----FQLEAVGGDHIEGHADGIDAQVVKEAVLQA 146 (155)
Q Consensus 86 ~~~~g~l~~il~aLe~l~L~V~~a~is~~~~----~~l~~~~~~~~~~~~~~~~~~~vk~~l~~a 146 (155)
.+ ||.|.++|..|...|++.....+.+..+ +.+.+ +- +...+...++++|...
T Consensus 217 ~~-pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi---D~----eg~~~d~~v~~AL~~L 273 (329)
T 3luy_A 217 TG-PGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIV---TL----DAAPWEERFRDALVEI 273 (329)
T ss_dssp CS-TTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEE---EE----SSCTTSHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEE---EE----eCCcCCHHHHHHHHHH
Confidence 47 9999999999999999999999988764 33332 21 1123445677776554
No 65
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=40.51 E-value=9.9 Score=29.01 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=31.3
Q ss_pred HHHHHHHhHHHhhcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHh
Q 031670 7 NKAALYEKLMLLRDVTNSTSMNKTSIVVDASKYIEELKQQVETLNQ 52 (155)
Q Consensus 7 RR~kln~~~~~LRsl~p~~k~DKaSIl~dAI~YIk~Lq~~v~~Le~ 52 (155)
=|..++.....||-|....=..-..++.|||+|+|.|-+=...|+.
T Consensus 52 v~~Dl~~F~~QL~qL~~~~i~~Tre~v~d~l~YLkkLD~l~~~Lq~ 97 (204)
T 2jqq_A 52 TQSDLQKFMTQLDHLIKDDISNTQEIIKDVLEYLKKLDEIYGSLRN 97 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777788775311122246889999999999877766654
No 66
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=40.42 E-value=76 Score=20.82 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=43.1
Q ss_pred eEEEEEEeccCC-CCHHHHHHHHHHhCCCeEEEEEEEee-CC-eEEEEEecccccCCCCCCCHHHHHHHHHH
Q 031670 77 GFLINVYLEKNC-SGLLVSVLEAFEDLGLEVLDARVSCS-DR-FQLEAVGGDHIEGHADGIDAQVVKEAVLQ 145 (155)
Q Consensus 77 ~~~i~I~c~~~~-~g~l~~il~aLe~l~L~V~~a~is~~-~~-~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ 145 (155)
.+.|.|.|.... ..+..-++++|+..++.+.+..+..+ ++ ..+.+..... ..+..++-+.+-+
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~veI~A~L~at------~~~~~~Le~iv~r 73 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMV------GHTPAKLERLVAE 73 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECSSSCEEEEEEEEEE------SCCHHHHHHHHHH
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCCCCeEEEEEEEEec------CCCHHHHHHHHHH
Confidence 488999998652 34677889999999999999995553 33 5477766544 3455555554443
No 67
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=38.95 E-value=1.6e+02 Score=24.15 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=33.5
Q ss_pred EEEeCCeEEEEEE-eccCCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 031670 71 VETLEKGFLINVY-LEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (155)
Q Consensus 71 V~~~~~~~~i~I~-c~~~~~g~l~~il~aLe~l~L~V~~a~is~~ 114 (155)
+....+-+.|+|. .+.. +|.+.+|++.|.+.|++|.-...++.
T Consensus 258 i~~~~~~~~i~v~~~~~~-~g~~~~If~~La~~~I~vd~I~q~~s 301 (421)
T 3ab4_A 258 VATDKSEAKVTVLGISDK-PGEAAKVFRALADAEINIDMVLQNVF 301 (421)
T ss_dssp EEEECSEEEEEEEEEESS-TTHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred EEeeCCEEEEEEeccCCc-ccHHHHHHHHHHHcCCcEEEEEccCc
Confidence 3444566888888 5788 99999999999999999887654333
No 68
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=38.71 E-value=22 Score=22.86 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhhhccCc
Q 031670 37 SKYIEELKQQVETLNQEIGTSE 58 (155)
Q Consensus 37 I~YIk~Lq~~v~~Le~e~~~~~ 58 (155)
-.|+..|+.++..|+..+..+.
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~ 68 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 4699999999999999776543
No 69
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=38.62 E-value=1.6e+02 Score=24.11 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=43.0
Q ss_pred EEEeCCeEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHHHHHH
Q 031670 71 VETLEKGFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQAI 147 (155)
Q Consensus 71 V~~~~~~~~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai 147 (155)
|+..++-..|.|... .. ||.+.+++++|.+-|++|...+ +++ ..+.+.+ ... +.+..-++||+++
T Consensus 338 v~~~~~~a~vsvVG~gm~~~-~Gv~a~~f~aL~~~~InI~~is--~Se-~~is~vV-~~~-------d~~~Av~~Lh~~f 405 (421)
T 3ab4_A 338 VLYDDQVGKVSLVGAGMKSH-PGVTAEFMEALRDVNVNIELIS--TSE-IRISVLI-RED-------DLDAAARALHEQF 405 (421)
T ss_dssp EEEECCEEEEEEECGGGTSC-TTHHHHHHHHHHHTTCCCCEEE--EET-TEEEEEE-EGG-------GHHHHHHHHHHHT
T ss_pred EEEeCCeEEEEEEccCcccC-ccHHHHHHHHHHHCCCCEEEEE--cCC-CeEEEEE-eHH-------HHHHHHHHHHHHH
Confidence 334455567777775 45 8999999999999999998543 333 2332222 221 5666777788776
Q ss_pred H
Q 031670 148 K 148 (155)
Q Consensus 148 ~ 148 (155)
.
T Consensus 406 ~ 406 (421)
T 3ab4_A 406 Q 406 (421)
T ss_dssp T
T ss_pred h
Confidence 4
No 70
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=38.52 E-value=24 Score=18.66 Aligned_cols=15 Identities=13% Similarity=0.552 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhh
Q 031670 39 YIEELKQQVETLNQE 53 (155)
Q Consensus 39 YIk~Lq~~v~~Le~e 53 (155)
.+++||+++..|+.-
T Consensus 14 ivq~lq~r~drle~t 28 (32)
T 2akf_A 14 IVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467777777777764
No 71
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=35.75 E-value=50 Score=22.13 Aligned_cols=19 Identities=11% Similarity=0.298 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhhccCc
Q 031670 40 IEELKQQVETLNQEIGTSE 58 (155)
Q Consensus 40 Ik~Lq~~v~~Le~e~~~~~ 58 (155)
++++|++.++++++++..+
T Consensus 12 mq~mQ~~m~~~QeeL~~~~ 30 (99)
T 3f42_A 12 LDGMKKEFSQLEEKNKDTI 30 (99)
T ss_dssp HHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHhcCE
Confidence 3899999999999987653
No 72
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=35.69 E-value=87 Score=26.53 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=32.6
Q ss_pred EEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 031670 78 FLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (155)
Q Consensus 78 ~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~ 116 (155)
..|-+..+++ +|.|.++|..|...|+++.+..+-+..+
T Consensus 35 TSLiFsl~n~-pGAL~~~L~~Fa~~gINLTkIESRPsk~ 72 (429)
T 1phz_A 35 ISLIFSLKEE-VGALAKVLRLFEENDINLTHIESRPSRL 72 (429)
T ss_dssp EEEEEEEECC-TTHHHHHHHHHHTTTCCTTSEEEEECSS
T ss_pred EEEEEEeCCC-ccHHHHHHHHHHHcCCceEEEEeeecCC
Confidence 5555666888 9999999999999999999999888753
No 73
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.51 E-value=61 Score=21.43 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=27.3
Q ss_pred CeEEEEEEec------cCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 031670 76 KGFLINVYLE------KNCSGLLVSVLEAFEDLGLEVLDARVSCSD 115 (155)
Q Consensus 76 ~~~~i~I~c~------~~~~g~l~~il~aLe~l~L~V~~a~is~~~ 115 (155)
..++|.+... .- +.++..+++.|..+| +|+.+++....
T Consensus 8 ~tv~V~~~~~~~~~~~fd-~~l~~~L~~~F~~~G-~Vi~vr~~~d~ 51 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFD-DALIDELLQQFASFG-EVILIRFVEDK 51 (91)
T ss_dssp CEEEEEEECSSTTTCSCC-HHHHHHHHHHHHTTC-CEEEEEECSSS
T ss_pred CeEEEEeccCccccccCC-HHHHHHHHHHHHhCC-CeEEEEEecCC
Confidence 3567777431 11 347889999999999 89998877644
No 74
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=34.16 E-value=50 Score=16.87 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=15.5
Q ss_pred CcccchHHHHHHHHHHHHHH
Q 031670 27 MNKTSIVVDASKYIEELKQQ 46 (155)
Q Consensus 27 ~DKaSIl~dAI~YIk~Lq~~ 46 (155)
++..-+|-+|.+|+...+++
T Consensus 2 ~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 45667889999999877664
No 75
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=33.22 E-value=24 Score=21.67 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 031670 37 SKYIEELKQQVETLNQEIGT 56 (155)
Q Consensus 37 I~YIk~Lq~~v~~Le~e~~~ 56 (155)
-.|+.+|+.+|+.|+.+...
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~ 48 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYH 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888776443
No 76
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=32.90 E-value=27 Score=22.95 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 031670 33 VVDASKYIEELKQQVE 48 (155)
Q Consensus 33 l~dAI~YIk~Lq~~v~ 48 (155)
+.+|+.||+.++.+-+
T Consensus 10 ~~~A~~YvnkVK~rF~ 25 (89)
T 1g1e_B 10 FNHAINYVNKIKNRFQ 25 (89)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 6799999999998853
No 77
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=32.47 E-value=86 Score=26.25 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=40.6
Q ss_pred CCeEEEEEeCCeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 031670 66 LPVVTVETLEKGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCSDR 116 (155)
Q Consensus 66 ~p~V~V~~~~~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~ 116 (155)
.|+|......+...|.+.-... ||.+.+|-..|-+.|++|..-...+.++
T Consensus 332 ~p~~~~~~~~~~~r~~~~h~n~-p~~~~~i~~~~~~~~~ni~~~~~~~~~~ 381 (416)
T 3k5p_A 332 FPQVQLPPRPTGTRFMHVHENR-PGILNSLMNVFSHHHINIASQFLQTDGE 381 (416)
T ss_dssp SCCCCCCCCSSSEEEEEEECCC-TTHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred CCCcCCCCCCCceEEEEEecCC-ccHHHHHHHHHHHcCCCHHHHhccCCCc
Confidence 5666655555567788888889 9999999999999999999877777665
No 78
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=31.59 E-value=28 Score=21.90 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhhccCc
Q 031670 37 SKYIEELKQQVETLNQEIGTSE 58 (155)
Q Consensus 37 I~YIk~Lq~~v~~Le~e~~~~~ 58 (155)
-.|+..|+.+++.||..+..+.
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4699999999999998776543
No 79
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=30.85 E-value=21 Score=22.16 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=17.9
Q ss_pred chHHH-HHHHHHHHHHHHHHHHhh
Q 031670 31 SIVVD-ASKYIEELKQQVETLNQE 53 (155)
Q Consensus 31 SIl~d-AI~YIk~Lq~~v~~Le~e 53 (155)
|.|.| ++.|-++||+.+.+|--+
T Consensus 25 SSLEdPst~YYqeLqr~is~L~lq 48 (66)
T 2acm_A 25 SSLEDPSTDYYQELQRDISEMFLQ 48 (66)
T ss_dssp GGGGCTTSHHHHHHHHHHHHHHHH
T ss_pred hcccCcchHHHHHHHHHHHHHHHH
Confidence 34444 889999999999998654
No 80
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=30.83 E-value=31 Score=22.43 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 031670 32 IVVDASKYIEELKQQVE 48 (155)
Q Consensus 32 Il~dAI~YIk~Lq~~v~ 48 (155)
-+.||+.||+.++.+-+
T Consensus 6 ~~~~A~~yv~kVK~rF~ 22 (85)
T 1e91_A 6 EFNNAISYVNKIKTRFL 22 (85)
T ss_dssp HHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 36799999999998853
No 81
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=30.41 E-value=2.7e+02 Score=24.19 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=48.6
Q ss_pred EEEEEeCCeEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHHHH
Q 031670 69 VTVETLEKGFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQ 145 (155)
Q Consensus 69 V~V~~~~~~~~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ 145 (155)
-+|...++-..|.|... .. +|.+.+++++|...+++|...+ ++ ...+-..+.+. +.+...++|++
T Consensus 347 ~~v~~~~~~a~VsvVG~gm~~~-~Gv~a~if~aL~~~~Ini~~is--tS-e~~Is~vI~~~--------d~~~Av~aLh~ 414 (600)
T 3l76_A 347 AEIIVEKGIAKIAIAGAGMIGR-PGIAAKMFKTLADVGVNIEMIS--TS-EVKVSCVIDQR--------DADRAIAALSN 414 (600)
T ss_dssp SEEEEECSEEEEEEECGGGTTC-TTHHHHHHHHHHHTTCCCCEEE--EC-SSEEEEEEEGG--------GHHHHHHHHHH
T ss_pred ceeEecCCeEEEEEECCCcccC-ccHHHHHHHHHHhCCCcEEEEe--cC-CCEEEEEEcHH--------HHHHHHHHHHH
Confidence 35556666788888875 45 9999999999999999998766 22 44444333322 56677778888
Q ss_pred HHHh
Q 031670 146 AIKN 149 (155)
Q Consensus 146 ai~~ 149 (155)
++.-
T Consensus 415 ~f~~ 418 (600)
T 3l76_A 415 AFGV 418 (600)
T ss_dssp HTTC
T ss_pred hhcc
Confidence 7754
No 82
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=30.11 E-value=54 Score=27.69 Aligned_cols=33 Identities=9% Similarity=0.237 Sum_probs=29.2
Q ss_pred eEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEE
Q 031670 77 GFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDAR 110 (155)
Q Consensus 77 ~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~ 110 (155)
.+++++.+.++ ||.|.+|-..|-+.++.+.+..
T Consensus 359 ~yy~r~~~~d~-~gvl~~i~~~~~~~~isi~~~~ 391 (444)
T 3mtj_A 359 AYYLRLRAFDR-PGVLADITRILADSSISIDAMV 391 (444)
T ss_dssp EEEEEEEEC-C-CHHHHHHHHHHHHTTCCEEEEE
T ss_pred eeEEEEEecCc-ccHHHHHHHHHHhcCCceeEEe
Confidence 49999999999 9999999999999999987653
No 83
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=29.35 E-value=31 Score=20.87 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 031670 37 SKYIEELKQQVETLNQEIG 55 (155)
Q Consensus 37 I~YIk~Lq~~v~~Le~e~~ 55 (155)
-.|+.+|+.++..|+.+..
T Consensus 21 k~~~~~Le~~v~~L~~~n~ 39 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNS 39 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566777777777665433
No 84
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=29.28 E-value=1.9e+02 Score=24.27 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=43.3
Q ss_pred EEEeCCeEEEEEEecc---CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHHHHHH
Q 031670 71 VETLEKGFLINVYLEK---NCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQAI 147 (155)
Q Consensus 71 V~~~~~~~~i~I~c~~---~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai 147 (155)
|...++-..|.|.... . ||.+.+++++|.+-|++|.-.+-.++ ...+-+.+ ... +.+..-++||+++
T Consensus 398 v~~~~~~a~vsvVG~gm~~~-~Gvaak~f~aL~~~~InI~misqgtS-e~~Is~vV-~~~-------d~~~Av~aLh~~f 467 (473)
T 3c1m_A 398 VSVDKDVCVISVVGAGMRGA-KGIAGKIFTAVSESGANIKMIAQGSS-EVNISFVI-DEK-------DLLNCVRKLHEKF 467 (473)
T ss_dssp EEEEEEEEEEEEECTTTTTC-TTHHHHHHHHHHHHTCCCCEEEESSC-SSEEEEEE-EGG-------GHHHHHHHHHHHH
T ss_pred EEEeCCcEEEEEEecCCCCC-hhHHHHHHHHHHHCCCCEEEEecCCC-CceEEEEE-cHH-------HHHHHHHHHHHHH
Confidence 4444455677777753 5 89999999999999999954432233 23333222 221 5666777888776
Q ss_pred H
Q 031670 148 K 148 (155)
Q Consensus 148 ~ 148 (155)
-
T Consensus 468 ~ 468 (473)
T 3c1m_A 468 I 468 (473)
T ss_dssp T
T ss_pred h
Confidence 4
No 85
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=28.86 E-value=1.5e+02 Score=20.64 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=39.6
Q ss_pred EEeCCeEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEecccccCCCCCCCHHHHHHHHHHHHH
Q 031670 72 ETLEKGFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLEAVGGDHIEGHADGIDAQVVKEAVLQAIK 148 (155)
Q Consensus 72 ~~~~~~~~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai~ 148 (155)
+..++-..|.|... .. ||...+++.+|. |++|.-.+-.+++- .+...+ ... +.+...++||+++.
T Consensus 83 ~~~~~~a~vsvvG~gm~~~-~gv~a~~f~aL~--~Ini~~isqg~Se~-~is~vv-~~~-------d~~~a~~~Lh~~f~ 150 (157)
T 3mah_A 83 TVDKDMVIICIVGDMEWDN-VGFEARIINALK--GVPVRMISYGGSNY-NVSVLV-KAE-------DKKKALIALSNKLF 150 (157)
T ss_dssp EEEEEEEEEEEEC-------CCHHHHHHHTTT--TSCCSEEEECSSSS-CEEEEE-EGG-------GHHHHHHHHHHHHH
T ss_pred EEeCCeEEEEEECCCcccC-ccHHHHHHHHhC--CCCeEEEeeCCCCC-EEEEEE-cHH-------HHHHHHHHHHHHHh
Confidence 33344466666654 35 899999999999 77776654333332 232222 322 56777788888875
Q ss_pred hh
Q 031670 149 NV 150 (155)
Q Consensus 149 ~~ 150 (155)
.-
T Consensus 151 ~~ 152 (157)
T 3mah_A 151 NS 152 (157)
T ss_dssp C-
T ss_pred cc
Confidence 43
No 86
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=27.35 E-value=16 Score=21.67 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHH
Q 031670 37 SKYIEELKQQVETLN 51 (155)
Q Consensus 37 I~YIk~Lq~~v~~Le 51 (155)
-.||..|+++++.||
T Consensus 51 ~~~~~~Le~rl~~LE 65 (66)
T 1d66_A 51 RAHLTEVESRLERLE 65 (66)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 579999999998775
No 87
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=26.14 E-value=70 Score=20.81 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 031670 33 VVDASKYIEELKQQVETLNQEIG 55 (155)
Q Consensus 33 l~dAI~YIk~Lq~~v~~Le~e~~ 55 (155)
+..||+-|.-||..+++|+.+..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~ 37 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNN 37 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999988887543
No 88
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=26.01 E-value=61 Score=22.54 Aligned_cols=26 Identities=15% Similarity=0.396 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhcc
Q 031670 31 SIVVDASKYIEELKQQVETLNQEIGT 56 (155)
Q Consensus 31 SIl~dAI~YIk~Lq~~v~~Le~e~~~ 56 (155)
+|..++=.||-.|+.+|..|+.++..
T Consensus 33 ~l~~E~q~~v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 33 NMKTESQRVVLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778889999999999999887654
No 89
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=25.87 E-value=3e+02 Score=23.26 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=33.2
Q ss_pred CeEEEEEEeccCCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 031670 76 KGFLINVYLEKNCSGLLVSVLEAFEDLGLEVLDARVSCS 114 (155)
Q Consensus 76 ~~~~i~I~c~~~~~g~l~~il~aLe~l~L~V~~a~is~~ 114 (155)
++.++-+.-+++ ||.+.+|...|-+.|+++-+.++...
T Consensus 453 ~~~~l~v~~~D~-PG~I~~v~~~Lg~~~INIa~m~v~r~ 490 (529)
T 1ygy_A 453 QGINLIIHYVDR-PGALGKIGTLLGTAGVNIQAAQLSED 490 (529)
T ss_dssp CSEEEEEEESCC-TTHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred CccEEEEEcCCC-CchHHHHHHHHHhcCCCeeeEEEecC
Confidence 346677777889 99999999999999999999999875
No 90
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=25.83 E-value=1.9e+02 Score=20.85 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=29.7
Q ss_pred EEEeCCeEEEEEEe-ccCCCCHHHHHHHHHHhCCCeEEEEE
Q 031670 71 VETLEKGFLINVYL-EKNCSGLLVSVLEAFEDLGLEVLDAR 110 (155)
Q Consensus 71 V~~~~~~~~i~I~c-~~~~~g~l~~il~aLe~l~L~V~~a~ 110 (155)
|....+-..|+|.. +.. +|.+.+|+..|...|+.|.-..
T Consensus 10 Ia~~~~~~~Iti~~~~~~-~G~~a~If~~La~~~I~vd~I~ 49 (181)
T 3s1t_A 10 VAHDRSEAKVTIVGLPDI-PGYAAKVFRAVADADVNIDMVL 49 (181)
T ss_dssp EEEECSEEEEEEEEEESS-TTHHHHHHHHHHHTTCCCCCEE
T ss_pred EEecCCEEEEEEecCCCC-cCHHHHHHHHHHHcCCcEEEEE
Confidence 44445557777754 566 9999999999999998887654
No 91
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=25.67 E-value=2.2e+02 Score=23.81 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=41.2
Q ss_pred eCCeEEEEEEec---cCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEecccccCCCCCCCHHHHHHHHHHHH
Q 031670 74 LEKGFLINVYLE---KNCSGLLVSVLEAFEDLGLEVLDARVSCSD-RFQLEAVGGDHIEGHADGIDAQVVKEAVLQAI 147 (155)
Q Consensus 74 ~~~~~~i~I~c~---~~~~g~l~~il~aLe~l~L~V~~a~is~~~-~~~l~~~~~~~~~~~~~~~~~~~vk~~l~~ai 147 (155)
..+-..|.|... .. +|.+.+++.+|.+.|++|....-.+.. ++++. + ... +.+...+.|++.+
T Consensus 315 ~~~~a~Isv~g~~m~~~-~G~~a~if~~La~~~InV~~IsQ~tse~~Is~~--V-~~~-------d~~~a~~~L~~~l 381 (473)
T 3c1m_A 315 IKNVALINIFGAGMVGV-SGTAARIFKALGEEEVNVILISQGSSETNISLV--V-SEE-------DVDKALKALKREF 381 (473)
T ss_dssp EEEEEEEEEEECSSSCH-HHHHHHHHHHHHHTTCCEEEEEECCTTCCEEEE--E-EGG-------GHHHHHHHHHHHH
T ss_pred cCCeEEEEEecCCCCCC-cCHHHHHHHHHHHcCCcEEEEEecCCCCEEEEE--E-ech-------HHHHHHHHHHHHH
Confidence 344578888864 44 689999999999999999876643332 23332 2 221 2456667777666
No 92
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=25.40 E-value=41 Score=21.56 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=22.5
Q ss_pred eEEEEEeC-CeEEEEEEeccCCCCHHHHHHHHHH
Q 031670 68 VVTVETLE-KGFLINVYLEKNCSGLLVSVLEAFE 100 (155)
Q Consensus 68 ~V~V~~~~-~~~~i~I~c~~~~~g~l~~il~aLe 100 (155)
+-+|++.. +++.+-|.|+++ .=+|..|=..++
T Consensus 11 dW~VsRt~dGdYrL~itcpkK-e~LLqSIEgmik 43 (76)
T 2rp4_A 11 EWNVSRTPDGDYRLAITCPNK-EWLLQSIEGMIK 43 (76)
T ss_dssp CCEEECCTTTBEEEEEEESCH-HHHHHHHHHHHH
T ss_pred cceeeeccCCceEEEEEeCcH-HHHHHHHHHHHH
Confidence 47788875 569999999999 555555544443
No 93
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=25.23 E-value=45 Score=21.15 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 031670 33 VVDASKYIEELKQQVE 48 (155)
Q Consensus 33 l~dAI~YIk~Lq~~v~ 48 (155)
+.||+.|++..+.+-+
T Consensus 4 ~~dA~~yl~~VK~~F~ 19 (77)
T 2czy_A 4 VEDALTYLDQVKIRFG 19 (77)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 5799999999998864
No 94
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=25.12 E-value=69 Score=16.18 Aligned_cols=18 Identities=22% Similarity=0.470 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 031670 39 YIEELKQQVETLNQEIGT 56 (155)
Q Consensus 39 YIk~Lq~~v~~Le~e~~~ 56 (155)
-+|.|++.+-.|+-|++.
T Consensus 9 nvkrlekevgklegevar 26 (28)
T 4dac_A 9 NVKRLEKEVGKLEGEVAR 26 (28)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHhhhhhhhhh
Confidence 467777777777766543
No 95
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=24.66 E-value=44 Score=22.67 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031670 33 VVDASKYIEELKQQVET 49 (155)
Q Consensus 33 l~dAI~YIk~Lq~~v~~ 49 (155)
+.||+.||+.++.+-+.
T Consensus 7 ~~dA~~YvnkVK~rF~d 23 (105)
T 2f05_A 7 FNNAISYVNKIKTRFLD 23 (105)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 57999999999988543
No 96
>3e1r_A Centrosomal protein of 55 kDa; CEP55, ALIX, cytokinesis, ESCRT, alternative splicing, cell cycle, cell division, coiled coil, mitosis; 2.00A {Homo sapiens}
Probab=24.54 E-value=71 Score=19.44 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccC
Q 031670 36 ASKYIEELKQQVETLNQEIGTS 57 (155)
Q Consensus 36 AI~YIk~Lq~~v~~Le~e~~~~ 57 (155)
-+.||+.|..++-+||+..+..
T Consensus 32 ReayV~gll~~i~eleq~~~~a 53 (58)
T 3e1r_A 32 REVYVKGLLAKIFELEKKTETA 53 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4679999999999999876543
No 97
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=24.54 E-value=2e+02 Score=24.52 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=32.8
Q ss_pred CCeEEEEEEe---ccCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEE
Q 031670 75 EKGFLINVYL---EKNCSGLLVSVLEAFEDLGLEVLDARVSCSDRFQLE 120 (155)
Q Consensus 75 ~~~~~i~I~c---~~~~~g~l~~il~aLe~l~L~V~~a~is~~~~~~l~ 120 (155)
.+-..|+|.. ... +|.+.+|+++|...|+.|..... .-.++++.
T Consensus 339 ~~~~~I~i~~~~m~~~-~g~~~~if~~la~~~I~vd~I~s-se~sis~~ 385 (510)
T 2cdq_A 339 RNVTMLDIASTRMLGQ-VGFLAKVFSIFEELGISVDVVAT-SEVSISLT 385 (510)
T ss_dssp EEEEEEEEECGGGTTC-TTHHHHHHHHHHHTTCCEEEEEE-ETTEEEEE
T ss_pred CCeEEEEEEcCCCCCc-ccHHHHHHHHHHHcCCcEEEEEe-CCCeEEEE
Confidence 3458899987 346 89999999999999999988742 23344443
No 98
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=23.98 E-value=45 Score=20.02 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 031670 37 SKYIEELKQQVETLNQEIG 55 (155)
Q Consensus 37 I~YIk~Lq~~v~~Le~e~~ 55 (155)
-.|+.+|+.++..|+.+..
T Consensus 21 k~~~~~Le~~~~~L~~~n~ 39 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNG 39 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3577777777777776543
No 99
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=23.26 E-value=29 Score=17.34 Aligned_cols=8 Identities=13% Similarity=0.343 Sum_probs=5.1
Q ss_pred hhhhHHHH
Q 031670 3 SREQNKAA 10 (155)
Q Consensus 3 sER~RR~k 10 (155)
+||+||..
T Consensus 12 aerrrrra 19 (26)
T 1g70_B 12 AERRRRRA 19 (26)
T ss_pred HHHHHHHH
Confidence 57777653
Done!