Query 031671
Match_columns 155
No_of_seqs 226 out of 1636
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 03:46:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10146 aminoalkylphosphonic 99.9 3.5E-24 7.5E-29 129.6 13.2 128 3-136 2-137 (144)
2 KOG3139 N-acetyltransferase [G 99.9 3.2E-23 6.8E-28 122.1 15.7 132 20-153 26-162 (165)
3 PRK10140 putative acetyltransf 99.9 9.9E-23 2.1E-27 125.5 17.1 147 1-155 1-162 (162)
4 PRK09491 rimI ribosomal-protei 99.9 1.2E-22 2.5E-27 123.2 15.8 141 5-154 2-145 (146)
5 TIGR01575 rimI ribosomal-prote 99.9 8.9E-23 1.9E-27 121.4 12.9 129 21-151 2-131 (131)
6 TIGR03827 GNAT_ablB putative b 99.9 2.1E-22 4.6E-27 132.9 15.1 145 2-153 113-264 (266)
7 PRK03624 putative acetyltransf 99.9 4.2E-22 9.1E-27 119.8 14.6 128 4-138 2-131 (140)
8 TIGR02382 wecD_rffC TDP-D-fuco 99.9 5.4E-22 1.2E-26 125.2 14.8 131 4-140 43-188 (191)
9 PTZ00330 acetyltransferase; Pr 99.9 5.7E-22 1.2E-26 120.3 14.4 128 1-137 3-141 (147)
10 COG0456 RimI Acetyltransferase 99.9 2.5E-22 5.4E-27 125.4 12.3 143 4-152 11-170 (177)
11 PRK10975 TDP-fucosamine acetyl 99.9 3E-21 6.5E-26 122.2 15.6 131 4-140 46-191 (194)
12 KOG3216 Diamine acetyltransfer 99.9 2.9E-21 6.4E-26 112.7 13.6 138 3-141 2-150 (163)
13 TIGR02406 ectoine_EctA L-2,4-d 99.9 2.9E-21 6.2E-26 118.3 12.7 125 7-137 1-128 (157)
14 PRK15130 spermidine N1-acetylt 99.9 3.3E-20 7.2E-25 116.8 16.4 146 3-155 5-166 (186)
15 PF13420 Acetyltransf_4: Acety 99.9 4.9E-20 1.1E-24 112.8 16.7 132 7-145 1-147 (155)
16 PF13523 Acetyltransf_8: Acety 99.9 4.2E-20 9.2E-25 112.7 16.2 127 7-139 1-143 (152)
17 PF00583 Acetyltransf_1: Acety 99.9 7.7E-21 1.7E-25 104.6 11.0 78 56-133 1-83 (83)
18 PRK10151 ribosomal-protein-L7/ 99.9 2.4E-19 5.3E-24 112.2 17.9 145 3-154 9-175 (179)
19 PRK07922 N-acetylglutamate syn 99.9 4.3E-20 9.2E-25 114.3 13.9 123 3-137 4-127 (169)
20 PRK10809 ribosomal-protein-S5- 99.9 1.9E-19 4.1E-24 114.0 16.9 102 53-155 77-187 (194)
21 PF13527 Acetyltransf_9: Acety 99.9 1E-19 2.2E-24 107.9 14.2 118 6-135 1-127 (127)
22 PRK10314 putative acyltransfer 99.9 1.7E-20 3.7E-25 114.2 10.4 131 18-153 14-148 (153)
23 COG1247 Sortase and related ac 99.8 3.5E-19 7.7E-24 108.0 15.9 143 5-153 2-162 (169)
24 PLN02706 glucosamine 6-phospha 99.8 1.3E-19 2.9E-24 110.3 13.4 125 3-136 5-143 (150)
25 TIGR03103 trio_acet_GNAT GNAT- 99.8 2.9E-19 6.3E-24 127.9 16.9 130 4-140 82-220 (547)
26 PRK07757 acetyltransferase; Pr 99.8 2E-19 4.2E-24 109.8 13.4 121 5-137 2-122 (152)
27 TIGR03585 PseH pseudaminic aci 99.8 3.7E-19 8.1E-24 109.0 14.4 138 6-151 2-155 (156)
28 KOG3235 Subunit of the major N 99.8 1.7E-20 3.6E-25 110.1 7.7 142 5-153 2-151 (193)
29 PHA00673 acetyltransferase dom 99.8 5.8E-19 1.3E-23 105.6 13.9 117 20-137 16-146 (154)
30 PF13673 Acetyltransf_10: Acet 99.8 2E-19 4.2E-24 105.1 11.1 85 40-132 33-117 (117)
31 PRK10514 putative acetyltransf 99.8 9E-19 1.9E-23 106.0 14.2 132 5-153 2-143 (145)
32 PRK10562 putative acetyltransf 99.8 3.5E-18 7.6E-23 103.5 14.2 130 7-153 2-140 (145)
33 TIGR03448 mycothiol_MshD mycot 99.8 3.1E-18 6.6E-23 114.9 14.3 88 51-138 198-289 (292)
34 PRK09831 putative acyltransfer 99.8 3.2E-18 7E-23 103.9 12.4 91 51-154 53-144 (147)
35 TIGR01890 N-Ac-Glu-synth amino 99.8 2.3E-18 4.9E-23 120.6 12.7 122 5-137 283-405 (429)
36 PHA01807 hypothetical protein 99.8 8.6E-18 1.9E-22 101.6 13.3 91 40-130 42-136 (153)
37 PF13508 Acetyltransf_7: Acety 99.8 5.4E-18 1.2E-22 92.3 11.4 77 51-134 3-79 (79)
38 KOG3396 Glucosamine-phosphate 99.8 8E-18 1.7E-22 96.4 12.2 131 2-136 4-143 (150)
39 PRK12308 bifunctional arginino 99.8 3.8E-18 8.3E-23 123.9 13.6 123 4-138 463-585 (614)
40 TIGR01686 FkbH FkbH-like domai 99.8 5.4E-18 1.2E-22 114.7 13.1 124 3-135 185-319 (320)
41 COG1246 ArgA N-acetylglutamate 99.8 4.8E-18 1E-22 100.4 11.0 122 5-137 1-123 (153)
42 PRK05279 N-acetylglutamate syn 99.8 4.2E-18 9.1E-23 119.8 11.9 122 5-137 295-417 (441)
43 PLN02825 amino-acid N-acetyltr 99.8 7.2E-18 1.6E-22 118.8 12.4 121 6-137 369-490 (515)
44 PRK01346 hypothetical protein; 99.8 2.9E-17 6.2E-22 114.9 14.8 128 1-141 3-140 (411)
45 COG3153 Predicted acetyltransf 99.7 2.8E-16 6.1E-21 95.6 14.2 125 3-139 2-133 (171)
46 TIGR03448 mycothiol_MshD mycot 99.7 6.5E-17 1.4E-21 108.5 12.6 87 51-141 46-132 (292)
47 KOG3138 Predicted N-acetyltran 99.7 3.9E-17 8.5E-22 100.4 9.1 133 5-145 17-160 (187)
48 PF13302 Acetyltransf_3: Acety 99.7 3.9E-16 8.3E-21 94.1 13.4 122 5-133 2-142 (142)
49 KOG3234 Acetyltransferase, (GN 99.7 5.7E-17 1.2E-21 95.2 7.7 105 49-153 39-149 (173)
50 PF08445 FR47: FR47-like prote 99.7 1E-15 2.2E-20 84.2 11.2 73 61-138 11-83 (86)
51 PRK13688 hypothetical protein; 99.7 6.7E-16 1.4E-20 93.9 10.0 81 50-138 44-134 (156)
52 KOG2488 Acetyltransferase (GNA 99.7 8.5E-16 1.8E-20 93.2 8.4 96 44-139 85-184 (202)
53 cd02169 Citrate_lyase_ligase C 99.7 1.4E-15 3E-20 101.1 10.1 77 52-136 7-83 (297)
54 COG3393 Predicted acetyltransf 99.6 6.8E-15 1.5E-19 94.0 11.2 91 49-140 175-265 (268)
55 COG1670 RimL Acetyltransferase 99.6 5.7E-14 1.2E-18 88.1 12.8 94 60-154 77-178 (187)
56 COG2153 ElaA Predicted acyltra 99.6 5.3E-15 1.1E-19 86.1 5.8 128 20-152 17-149 (155)
57 PF12746 GNAT_acetyltran: GNAT 99.6 1.1E-13 2.4E-18 90.3 12.6 91 52-146 166-256 (265)
58 TIGR00124 cit_ly_ligase [citra 99.6 5.4E-14 1.2E-18 95.0 11.1 81 51-139 31-111 (332)
59 PF13718 GNAT_acetyltr_2: GNAT 99.5 8.9E-13 1.9E-17 82.2 12.9 113 40-153 16-193 (196)
60 COG3981 Predicted acetyltransf 99.5 2.3E-13 5E-18 81.7 9.6 86 53-139 71-161 (174)
61 KOG3397 Acetyltransferases [Ge 99.5 7.3E-13 1.6E-17 79.5 10.2 126 5-139 13-143 (225)
62 TIGR01211 ELP3 histone acetylt 99.4 4.6E-12 9.9E-17 90.2 11.4 86 50-138 410-517 (522)
63 PF08444 Gly_acyl_tr_C: Aralky 99.3 4.9E-12 1.1E-16 68.4 6.2 73 59-136 7-79 (89)
64 cd04301 NAT_SF N-Acyltransfera 99.3 3.4E-11 7.3E-16 62.1 8.3 61 54-114 2-64 (65)
65 PF12568 DUF3749: Acetyltransf 99.3 1.2E-10 2.6E-15 67.1 10.5 118 5-135 2-123 (128)
66 KOG4144 Arylalkylamine N-acety 99.3 8.9E-12 1.9E-16 73.4 5.1 125 4-137 11-161 (190)
67 COG1444 Predicted P-loop ATPas 99.2 7.4E-10 1.6E-14 81.3 12.1 111 40-152 459-607 (758)
68 PF14542 Acetyltransf_CG: GCN5 99.2 9.7E-10 2.1E-14 59.1 9.0 71 54-130 2-72 (78)
69 COG3818 Predicted acetyltransf 99.1 3.7E-10 8E-15 64.9 4.7 68 73-140 82-151 (167)
70 COG2388 Predicted acetyltransf 99.0 2.4E-09 5.1E-14 59.6 6.8 64 49-112 13-76 (99)
71 KOG4135 Predicted phosphogluco 99.0 4E-08 8.6E-13 57.9 10.9 76 62-137 84-170 (185)
72 COG5628 Predicted acetyltransf 98.8 9.8E-08 2.1E-12 54.2 8.8 106 21-134 11-120 (143)
73 COG3375 Uncharacterized conser 98.8 3.7E-07 8.1E-12 57.6 12.0 138 4-146 2-146 (266)
74 COG4552 Eis Predicted acetyltr 98.8 5.1E-08 1.1E-12 65.4 7.8 85 50-139 38-129 (389)
75 COG3053 CitC Citrate lyase syn 98.8 1.3E-07 2.8E-12 62.0 9.4 80 53-140 38-118 (352)
76 PF00765 Autoind_synth: Autoin 98.6 3.9E-06 8.6E-11 52.6 12.6 115 20-137 9-155 (182)
77 PRK13834 putative autoinducer 98.5 3.2E-05 7E-10 49.5 13.8 115 18-135 15-163 (207)
78 TIGR03694 exosort_acyl putativ 98.4 5.2E-06 1.1E-10 54.4 9.9 113 20-135 18-196 (241)
79 COG0454 WecD Histone acetyltra 98.4 4.4E-07 9.6E-12 52.5 4.3 44 81-132 87-130 (156)
80 PF04958 AstA: Arginine N-succ 98.3 3.6E-05 7.9E-10 52.5 12.2 124 4-133 1-184 (342)
81 COG3882 FkbH Predicted enzyme 98.3 2.8E-06 6.1E-11 59.7 6.6 126 4-136 413-549 (574)
82 PF13480 Acetyltransf_6: Acety 98.3 4.8E-05 1E-09 45.5 11.4 65 51-116 71-135 (142)
83 PF06852 DUF1248: Protein of u 98.2 3.7E-05 8E-10 47.9 9.9 114 20-137 14-137 (181)
84 PRK10456 arginine succinyltran 98.2 3.3E-05 7.1E-10 52.6 9.4 90 5-100 2-144 (344)
85 COG3916 LasI N-acyl-L-homoseri 98.0 0.00072 1.6E-08 42.8 12.7 118 17-137 13-163 (209)
86 PF13880 Acetyltransf_13: ESCO 98.0 1.1E-05 2.3E-10 42.1 3.6 30 75-104 5-34 (70)
87 cd04264 DUF619-NAGS DUF619 dom 98.0 0.0002 4.4E-09 40.2 8.5 65 52-121 9-75 (99)
88 TIGR03245 arg_AOST_alph argini 97.9 0.00013 2.9E-09 49.5 8.6 89 7-101 2-144 (336)
89 TIGR03244 arg_catab_AstA argin 97.9 0.00023 4.9E-09 48.5 8.8 88 7-100 2-142 (336)
90 TIGR03243 arg_catab_AOST argin 97.8 0.0003 6.6E-09 47.8 8.9 89 7-101 2-143 (335)
91 COG1243 ELP3 Histone acetyltra 97.8 3.7E-05 8E-10 53.9 4.2 50 84-136 459-508 (515)
92 cd04265 DUF619-NAGS-U DUF619 d 97.8 0.00051 1.1E-08 38.6 8.1 65 52-121 10-75 (99)
93 TIGR03827 GNAT_ablB putative b 97.8 0.00013 2.9E-09 48.7 6.7 59 91-153 21-79 (266)
94 PF01233 NMT: Myristoyl-CoA:pr 97.7 0.0028 6.1E-08 38.6 12.6 104 5-111 24-146 (162)
95 PHA00432 internal virion prote 97.7 0.00038 8.2E-09 41.2 7.2 84 50-137 36-121 (137)
96 PF01853 MOZ_SAS: MOZ/SAS fami 97.6 0.00042 9E-09 43.3 6.9 48 61-108 66-113 (188)
97 PRK14852 hypothetical protein; 97.6 0.0011 2.4E-08 51.4 9.7 140 5-152 29-196 (989)
98 TIGR03019 pepcterm_femAB FemAB 97.6 0.003 6.4E-08 43.6 11.0 91 52-143 196-287 (330)
99 PF05301 Mec-17: Touch recepto 97.5 0.002 4.4E-08 37.1 8.0 51 77-130 48-98 (120)
100 PF11039 DUF2824: Protein of u 97.5 0.0059 1.3E-07 35.7 10.7 102 50-154 37-139 (151)
101 PF04377 ATE_C: Arginine-tRNA- 97.5 0.007 1.5E-07 35.8 10.6 94 40-136 26-121 (128)
102 KOG2036 Predicted P-loop ATPas 97.4 0.0011 2.4E-08 49.3 7.2 33 75-107 614-646 (1011)
103 PLN03238 probable histone acet 97.3 0.0013 2.8E-08 43.8 6.4 50 59-108 139-188 (290)
104 KOG2535 RNA polymerase II elon 97.3 0.00057 1.2E-08 46.6 4.3 48 86-136 498-546 (554)
105 PHA01733 hypothetical protein 97.2 0.00054 1.2E-08 41.2 3.2 86 50-138 46-133 (153)
106 PRK01305 arginyl-tRNA-protein 97.1 0.036 7.7E-07 36.5 12.0 79 56-137 149-227 (240)
107 PTZ00064 histone acetyltransfe 97.0 0.0019 4.1E-08 46.1 5.4 49 60-108 369-417 (552)
108 PLN03239 histone acetyltransfe 97.0 0.0027 5.8E-08 43.5 5.8 49 60-108 198-246 (351)
109 PF09924 DUF2156: Uncharacteri 96.9 0.038 8.2E-07 37.7 10.6 67 48-115 177-245 (299)
110 COG3138 AstA Arginine/ornithin 96.9 0.0085 1.8E-07 39.9 6.8 86 5-96 2-140 (336)
111 PF13444 Acetyltransf_5: Acety 96.8 0.0048 1E-07 34.9 5.1 49 49-97 28-100 (101)
112 PLN00104 MYST -like histone ac 96.8 0.0019 4.1E-08 45.8 4.0 50 59-108 290-339 (450)
113 cd04266 DUF619-NAGS-FABP DUF61 96.6 0.049 1.1E-06 31.2 7.9 70 52-127 10-87 (108)
114 KOG2747 Histone acetyltransfer 96.1 0.013 2.7E-07 41.0 4.4 46 62-107 247-292 (396)
115 KOG3698 Hyaluronoglucosaminida 96.0 0.034 7.3E-07 40.9 6.4 57 82-138 823-879 (891)
116 KOG2779 N-myristoyl transferas 96.0 0.11 2.4E-06 35.9 8.2 112 17-128 90-223 (421)
117 PF04768 DUF619: Protein of un 95.6 0.29 6.2E-06 30.6 9.8 107 19-135 32-144 (170)
118 PF11124 Pho86: Inorganic phos 95.6 0.42 9.2E-06 32.5 10.6 86 50-136 169-270 (304)
119 KOG2696 Histone acetyltransfer 95.2 0.092 2E-06 36.5 5.9 59 62-121 200-262 (403)
120 PF12261 T_hemolysin: Thermost 95.1 0.25 5.4E-06 31.1 7.1 55 75-136 87-141 (179)
121 cd03173 DUF619-like DUF619 dom 95.1 0.29 6.3E-06 27.6 8.9 70 52-127 10-79 (98)
122 KOG3014 Protein involved in es 95.0 0.48 1E-05 31.2 8.3 32 74-105 182-213 (257)
123 PF02474 NodA: Nodulation prot 94.9 0.089 1.9E-06 32.6 4.7 126 1-131 1-137 (196)
124 COG2401 ABC-type ATPase fused 94.9 0.034 7.4E-07 39.6 3.3 62 75-136 241-307 (593)
125 PRK04531 acetylglutamate kinas 94.8 0.46 1E-05 34.0 8.5 101 20-134 263-365 (398)
126 KOG4601 Uncharacterized conser 94.5 0.097 2.1E-06 33.9 4.3 53 74-129 107-159 (264)
127 COG5027 SAS2 Histone acetyltra 93.7 0.018 3.8E-07 39.5 -0.1 45 61-105 248-292 (395)
128 PRK02983 lysS lysyl-tRNA synth 93.3 1.4 3.1E-05 35.9 9.5 59 59-118 429-487 (1094)
129 PF11090 DUF2833: Protein of u 92.1 0.72 1.6E-05 25.2 4.6 28 109-136 56-83 (86)
130 PHA02769 hypothetical protein; 92.0 0.21 4.6E-06 28.6 2.7 44 93-138 94-140 (154)
131 PF02388 FemAB: FemAB family; 91.9 0.8 1.7E-05 32.9 6.1 100 52-151 36-154 (406)
132 PF09390 DUF1999: Protein of u 91.8 1.8 3.9E-05 26.1 10.2 83 50-136 54-140 (161)
133 PF04339 DUF482: Protein of un 91.1 4.2 9.1E-05 29.0 12.3 128 4-140 199-332 (370)
134 COG5630 ARG2 Acetylglutamate s 90.9 2.3 5E-05 30.1 7.1 107 20-135 346-458 (495)
135 PRK00756 acyltransferase NodA; 90.7 1.3 2.7E-05 27.5 5.2 116 1-118 1-127 (196)
136 COG2935 Putative arginyl-tRNA: 90.0 4.1 8.9E-05 27.1 10.9 60 59-119 159-218 (253)
137 COG2898 Uncharacterized conser 87.7 9.9 0.00022 28.6 9.7 61 56-117 398-459 (538)
138 COG5092 NMT1 N-myristoyl trans 87.1 8.1 0.00018 26.8 8.1 57 52-108 133-198 (451)
139 cd04263 DUF619-NAGK-FABP DUF61 86.7 4 8.8E-05 23.0 8.3 70 52-127 10-79 (98)
140 PF04339 DUF482: Protein of un 84.5 12 0.00027 26.7 8.3 85 51-138 44-161 (370)
141 PF04816 DUF633: Family of unk 84.0 3.6 7.9E-05 26.6 4.7 48 91-138 74-123 (205)
142 PF02388 FemAB: FemAB family; 80.6 19 0.00042 26.1 8.9 56 59-115 301-356 (406)
143 COG3473 Maleate cis-trans isom 80.5 4.8 0.0001 26.2 4.2 36 102-137 111-149 (238)
144 KOG4387 Ornithine decarboxylas 80.5 12 0.00026 23.7 6.3 73 81-153 105-181 (191)
145 KOG1472 Histone acetyltransfer 79.1 0.64 1.4E-05 35.6 0.1 83 51-136 419-504 (720)
146 PHA00771 head assembly protein 78.3 12 0.00025 22.3 9.3 72 81-154 67-139 (151)
147 PF12953 DUF3842: Domain of un 77.0 6.3 0.00014 23.4 3.7 44 87-134 7-50 (131)
148 cd07235 MRD Mitomycin C resist 76.4 3.6 7.7E-05 23.6 2.7 24 112-136 4-27 (122)
149 COG2384 Predicted SAM-dependen 76.1 8 0.00017 25.4 4.3 48 91-138 93-142 (226)
150 TIGR02990 ectoine_eutA ectoine 75.9 5.3 0.00011 26.6 3.6 46 93-138 104-152 (239)
151 cd08353 Glo_EDI_BRP_like_7 Thi 75.4 3.1 6.6E-05 24.7 2.3 28 109-137 4-31 (142)
152 PRK15312 antimicrobial resista 74.8 11 0.00023 26.0 4.8 56 55-110 207-269 (298)
153 PTZ00129 40S ribosomal protein 71.4 21 0.00045 21.9 6.4 46 93-138 74-130 (149)
154 PF07395 Mig-14: Mig-14; Inte 70.7 30 0.00066 23.5 8.4 56 55-110 177-239 (264)
155 cd08356 Glo_EDI_BRP_like_17 Th 69.4 3.6 7.8E-05 23.4 1.6 18 121-138 13-30 (113)
156 COG2266 GTP:adenosylcobinamide 69.0 17 0.00036 23.0 4.4 47 93-140 26-72 (177)
157 KOG2779 N-myristoyl transferas 68.8 40 0.00086 24.1 8.3 82 54-143 310-403 (421)
158 PF13380 CoA_binding_2: CoA bi 67.4 19 0.00041 20.9 4.3 88 40-136 17-107 (116)
159 PF03376 Adeno_E3B: Adenovirus 66.9 2.6 5.7E-05 21.5 0.5 14 83-96 52-65 (67)
160 PRK14968 putative methyltransf 66.3 28 0.00061 21.6 5.3 45 95-139 129-173 (188)
161 cd09012 Glo_EDI_BRP_like_24 Th 66.2 7 0.00015 22.5 2.4 18 119-136 10-27 (124)
162 PF08901 DUF1847: Protein of u 66.1 12 0.00025 23.2 3.2 42 97-138 43-88 (157)
163 PF14696 Glyoxalase_5: Hydroxy 63.3 5.6 0.00012 24.1 1.6 30 108-138 9-38 (139)
164 cd08350 BLMT_like BLMT, a bleo 62.7 7 0.00015 22.4 1.9 20 120-139 13-32 (120)
165 cd08358 Glo_EDI_BRP_like_21 Th 62.6 17 0.00038 21.5 3.6 26 112-138 6-32 (127)
166 COG2348 Peptidoglycan interpep 62.3 60 0.0013 23.8 9.9 91 53-143 42-150 (418)
167 cd08344 MhqB_like_N N-terminal 61.5 12 0.00027 21.0 2.8 28 109-137 3-30 (112)
168 cd08342 HPPD_N_like N-terminal 61.4 16 0.00034 21.6 3.3 28 111-139 3-31 (136)
169 cd08346 PcpA_N_like N-terminal 61.3 18 0.00039 20.5 3.5 29 109-138 2-31 (126)
170 cd07267 THT_Oxygenase_N N-term 61.1 12 0.00026 21.1 2.7 27 110-137 5-31 (113)
171 KOG4195 Transient receptor pot 59.7 44 0.00095 22.1 5.1 77 51-138 127-204 (275)
172 TIGR03032 conserved hypothetic 58.5 57 0.0012 23.0 5.8 37 50-89 281-318 (335)
173 PF02799 NMT_C: Myristoyl-CoA: 57.9 49 0.0011 21.4 12.2 123 7-143 31-171 (190)
174 PF04015 DUF362: Domain of unk 57.8 33 0.00071 22.1 4.5 48 89-136 17-66 (206)
175 PF06559 DCD: 2'-deoxycytidine 55.3 7.9 0.00017 27.2 1.4 35 58-92 322-356 (364)
176 cd08362 BphC5-RrK37_N_like N-t 55.2 17 0.00038 20.5 2.7 30 108-138 3-33 (120)
177 TIGR00667 aat leucyl/phenylala 54.3 56 0.0012 21.0 10.0 81 43-136 90-172 (185)
178 PF00903 Glyoxalase: Glyoxalas 53.9 24 0.00051 19.9 3.2 30 109-139 2-32 (128)
179 PRK00301 aat leucyl/phenylalan 53.7 65 0.0014 21.6 9.3 83 41-136 118-202 (233)
180 PRK09607 rps11p 30S ribosomal 53.5 48 0.001 20.0 6.4 46 93-138 55-111 (132)
181 TIGR03628 arch_S11P archaeal r 53.4 44 0.00096 19.5 6.4 50 89-138 43-104 (114)
182 PF12681 Glyoxalase_2: Glyoxal 53.2 16 0.00034 20.2 2.3 19 121-139 7-26 (108)
183 COG5653 Protein involved in ce 52.6 90 0.0019 22.8 8.5 65 53-118 274-338 (406)
184 PF00571 CBS: CBS domain CBS d 52.0 17 0.00036 17.4 2.0 23 46-68 25-48 (57)
185 KOG0538 Glycolate oxidase [Ene 51.8 83 0.0018 22.2 5.8 52 75-133 121-172 (363)
186 PF00411 Ribosomal_S11: Riboso 51.8 46 0.00099 19.2 5.4 44 95-138 47-93 (110)
187 PF00925 GTP_cyclohydro2: GTP 51.5 33 0.00072 21.5 3.6 47 84-139 122-168 (169)
188 PF13530 SCP2_2: Sterol carrie 51.1 56 0.0012 21.3 4.8 58 52-116 26-88 (218)
189 KOG4039 Serine/threonine kinas 50.9 59 0.0013 21.0 4.5 61 60-129 83-144 (238)
190 COG1213 Predicted sugar nucleo 50.3 72 0.0016 21.4 5.1 51 93-143 30-81 (239)
191 COG3607 Predicted lactoylgluta 49.5 9.6 0.00021 22.6 1.0 27 112-138 5-32 (133)
192 PF02100 ODC_AZ: Ornithine dec 48.6 52 0.0011 19.0 4.3 55 83-138 30-88 (108)
193 PF10566 Glyco_hydro_97: Glyco 48.3 46 0.00099 22.9 4.1 41 92-133 70-121 (273)
194 PRK03681 hypA hydrogenase nick 47.6 29 0.00064 20.2 2.8 28 91-118 5-35 (114)
195 cd07265 2_3_CTD_N N-terminal d 47.6 30 0.00065 19.7 2.9 29 109-138 5-34 (122)
196 cd07253 Glo_EDI_BRP_like_2 Thi 47.4 26 0.00056 19.7 2.7 29 109-138 4-33 (125)
197 cd08352 Glo_EDI_BRP_like_1 Thi 46.5 38 0.00083 19.0 3.3 29 108-137 3-32 (125)
198 COG2348 Peptidoglycan interpep 46.4 1E+02 0.0023 22.7 5.8 75 60-134 301-380 (418)
199 PF14871 GHL6: Hypothetical gl 46.0 52 0.0011 19.7 3.7 26 88-113 37-62 (132)
200 cd08364 FosX FosX, a fosfomyci 45.9 37 0.0008 19.8 3.2 29 108-137 4-33 (131)
201 cd07243 2_3_CTD_C C-terminal d 45.6 40 0.00087 20.2 3.3 29 109-138 7-36 (143)
202 cd07242 Glo_EDI_BRP_like_6 Thi 45.0 44 0.00094 19.1 3.4 29 109-138 2-34 (128)
203 cd04619 CBS_pair_6 The CBS dom 44.8 46 0.001 18.5 3.4 20 50-69 90-109 (114)
204 PLN02979 glycolate oxidase 44.1 55 0.0012 23.6 4.1 48 79-133 125-172 (366)
205 TIGR00377 ant_ant_sig anti-ant 43.7 58 0.0013 18.1 4.4 39 94-135 61-99 (108)
206 TIGR00068 glyox_I lactoylgluta 43.7 38 0.00083 20.3 3.1 30 107-137 16-46 (150)
207 PRK00762 hypA hydrogenase nick 42.8 39 0.00085 20.0 2.9 29 90-118 4-35 (124)
208 COG0807 RibA GTP cyclohydrolas 42.7 68 0.0015 20.8 4.0 52 80-140 119-170 (193)
209 COG1658 Small primase-like pro 42.4 21 0.00045 21.3 1.6 23 80-102 59-81 (127)
210 cd07240 ED_TypeI_classII_N N-t 42.4 44 0.00095 18.6 3.1 27 111-138 5-32 (117)
211 cd07043 STAS_anti-anti-sigma_f 42.3 57 0.0012 17.6 4.8 41 92-135 54-94 (99)
212 cd04736 MDH_FMN Mandelate dehy 42.1 62 0.0013 23.3 4.2 48 78-133 119-166 (361)
213 PLN02300 lactoylglutathione ly 41.1 34 0.00073 23.3 2.8 38 99-137 13-53 (286)
214 cd07252 BphC1-RGP6_N_like N-te 41.1 35 0.00075 19.4 2.5 27 110-137 4-31 (120)
215 cd07244 FosA FosA, a Fosfomyci 41.0 55 0.0012 18.6 3.4 28 109-137 2-30 (121)
216 COG0375 HybF Zn finger protein 41.0 58 0.0013 19.1 3.2 36 91-126 5-46 (115)
217 TIGR00100 hypA hydrogenase nic 40.7 43 0.00093 19.5 2.8 28 91-118 5-35 (115)
218 cd07237 BphC1-RGP6_C_like C-te 40.6 57 0.0012 19.8 3.5 29 108-137 9-38 (154)
219 cd04182 GT_2_like_f GT_2_like_ 40.1 44 0.00096 20.6 3.1 40 93-132 25-64 (186)
220 COG0346 GloA Lactoylglutathion 40.1 48 0.001 18.5 3.1 29 110-139 4-33 (138)
221 cd08348 BphC2-C3-RGP6_C_like T 40.0 58 0.0013 18.8 3.4 28 111-139 4-32 (134)
222 PRK12380 hydrogenase nickel in 39.5 46 0.001 19.3 2.8 29 90-118 4-35 (113)
223 cd07238 Glo_EDI_BRP_like_5 Thi 39.1 25 0.00055 19.6 1.7 17 120-136 11-28 (112)
224 PF11633 SUD-M: Single-strande 38.8 32 0.00069 20.7 2.0 41 97-140 25-65 (142)
225 PRK11197 lldD L-lactate dehydr 38.3 75 0.0016 23.1 4.1 47 80-133 127-173 (381)
226 COG3543 Uncharacterized conser 38.1 78 0.0017 19.0 3.5 38 81-118 10-48 (135)
227 PRK09318 bifunctional 3,4-dihy 38.0 78 0.0017 23.0 4.2 31 107-139 326-356 (387)
228 cd07255 Glo_EDI_BRP_like_12 Th 38.0 53 0.0011 18.6 3.0 28 110-138 4-32 (125)
229 KOG2327 DNA-binding subunit of 37.6 57 0.0012 25.0 3.5 74 62-136 335-424 (602)
230 cd07241 Glo_EDI_BRP_like_3 Thi 37.5 55 0.0012 18.4 3.0 26 111-137 4-30 (125)
231 cd02540 GT2_GlmU_N_bac N-termi 37.5 73 0.0016 20.5 3.8 42 93-134 25-66 (229)
232 PRK00393 ribA GTP cyclohydrola 37.4 1.1E+02 0.0023 19.9 4.4 48 83-139 123-170 (197)
233 PF12652 CotJB: CotJB protein; 37.2 14 0.0003 19.9 0.4 36 95-130 3-38 (78)
234 CHL00041 rps11 ribosomal prote 37.2 88 0.0019 18.3 6.4 57 82-138 46-106 (116)
235 PRK13886 conjugal transfer pro 37.1 87 0.0019 21.1 4.1 44 89-133 11-55 (241)
236 PRK05031 tRNA (uracil-5-)-meth 37.1 1.1E+02 0.0025 21.8 4.9 54 78-139 289-343 (362)
237 cd08349 BLMA_like Bleomycin bi 36.9 38 0.00083 18.6 2.2 19 120-138 9-28 (112)
238 cd07264 Glo_EDI_BRP_like_15 Th 36.8 60 0.0013 18.3 3.1 24 112-136 4-28 (125)
239 PRK11478 putative lyase; Provi 36.5 42 0.0009 19.2 2.4 27 109-136 7-34 (129)
240 PF12804 NTP_transf_3: MobA-li 36.2 45 0.00097 20.1 2.6 42 93-136 23-64 (160)
241 PF01155 HypA: Hydrogenase exp 36.2 48 0.001 19.2 2.5 28 91-118 5-35 (113)
242 PRK14837 undecaprenyl pyrophos 36.1 52 0.0011 21.9 2.9 34 85-118 27-60 (230)
243 PF02836 Glyco_hydro_2_C: Glyc 36.1 1.4E+02 0.0031 20.5 6.4 68 73-140 12-81 (298)
244 TIGR00055 uppS undecaprenyl di 36.0 52 0.0011 21.9 2.9 34 85-118 20-53 (226)
245 TIGR00505 ribA GTP cyclohydrol 36.0 1.1E+02 0.0025 19.6 4.4 46 84-138 121-166 (191)
246 PF01740 STAS: STAS domain; I 36.0 57 0.0012 18.5 2.9 38 93-133 65-102 (117)
247 COG2231 Uncharacterized protei 35.8 40 0.00087 22.0 2.2 40 90-136 121-160 (215)
248 cd04197 eIF-2B_epsilon_N The N 35.7 53 0.0011 21.2 2.9 27 93-119 30-56 (217)
249 TIGR03632 bact_S11 30S ribosom 35.6 90 0.002 18.0 6.4 57 82-138 33-93 (108)
250 cd08357 Glo_EDI_BRP_like_18 Th 35.1 59 0.0013 18.3 2.9 19 119-137 9-28 (125)
251 cd07263 Glo_EDI_BRP_like_16 Th 35.0 41 0.00088 18.6 2.1 20 119-138 8-28 (119)
252 PRK09319 bifunctional 3,4-dihy 34.9 91 0.002 23.9 4.2 33 105-139 347-379 (555)
253 PLN02493 probable peroxisomal 34.9 90 0.002 22.5 4.1 49 78-133 125-173 (367)
254 PRK08533 flagellar accessory p 34.5 1.1E+02 0.0023 20.3 4.2 45 90-134 33-78 (230)
255 PF07927 YcfA: YcfA-like prote 33.8 57 0.0012 15.8 2.3 16 122-137 3-18 (56)
256 PRK14831 undecaprenyl pyrophos 33.3 54 0.0012 22.2 2.7 33 86-118 42-74 (249)
257 cd07266 HPCD_N_class_II N-term 33.2 51 0.0011 18.6 2.4 28 109-137 5-33 (121)
258 PRK00564 hypA hydrogenase nick 32.9 68 0.0015 18.8 2.8 27 91-117 5-34 (117)
259 COG2265 TrmA SAM-dependent met 32.8 1.3E+02 0.0028 22.3 4.7 54 78-136 363-417 (432)
260 cd06844 STAS Sulphate Transpor 32.8 91 0.002 17.2 4.6 39 93-134 56-94 (100)
261 PRK12485 bifunctional 3,4-dihy 32.6 1.2E+02 0.0025 22.1 4.3 32 104-138 334-365 (369)
262 cd03332 LMO_FMN L-Lactate 2-mo 32.1 1.1E+02 0.0023 22.3 4.1 38 95-132 151-188 (383)
263 PF03588 Leu_Phe_trans: Leucyl 31.8 1.4E+02 0.003 19.0 11.4 75 51-136 98-172 (173)
264 TIGR02708 L_lactate_ox L-lacta 31.8 1.2E+02 0.0026 21.9 4.3 47 80-133 138-184 (367)
265 PRK10150 beta-D-glucuronidase; 31.5 2.5E+02 0.0054 21.8 7.7 67 73-139 289-357 (604)
266 cd07262 Glo_EDI_BRP_like_19 Th 31.5 70 0.0015 18.1 2.8 26 112-138 4-33 (123)
267 PRK14019 bifunctional 3,4-dihy 31.5 1.3E+02 0.0029 21.7 4.5 32 104-138 331-362 (367)
268 COG0623 FabI Enoyl-[acyl-carri 31.4 94 0.002 21.0 3.4 41 76-116 144-185 (259)
269 cd04641 CBS_pair_28 The CBS do 31.4 1E+02 0.0022 17.3 3.5 26 43-68 88-114 (120)
270 COG5270 PUA domain (predicted 31.4 76 0.0016 20.4 2.9 19 51-69 163-181 (202)
271 PF05063 MT-A70: MT-A70 ; Int 31.2 1.4E+02 0.003 18.8 5.4 26 114-139 51-77 (176)
272 PF07315 DUF1462: Protein of u 31.0 1E+02 0.0022 17.2 3.2 29 38-66 53-81 (93)
273 PLN02535 glycolate oxidase 30.9 1.2E+02 0.0026 21.9 4.1 49 78-133 127-175 (364)
274 PF02268 TFIIA_gamma_N: Transc 30.9 70 0.0015 15.5 2.2 22 86-107 5-26 (49)
275 PF13704 Glyco_tranf_2_4: Glyc 30.7 97 0.0021 16.8 5.0 36 95-130 5-40 (97)
276 cd07246 Glo_EDI_BRP_like_8 Thi 30.6 1E+02 0.0022 17.1 3.8 20 119-138 11-31 (122)
277 cd00475 CIS_IPPS Cis (Z)-Isopr 30.4 75 0.0016 21.1 2.9 34 85-118 21-54 (221)
278 cd08361 PpCmtC_N N-terminal do 30.3 55 0.0012 18.8 2.2 27 110-137 8-35 (124)
279 COG1724 Predicted RNA binding 30.3 67 0.0015 16.7 2.1 19 121-139 10-28 (66)
280 cd07042 STAS_SulP_like_sulfate 29.9 1E+02 0.0022 16.8 4.8 40 93-135 58-97 (107)
281 PRK06724 hypothetical protein; 29.8 83 0.0018 18.5 2.9 28 108-136 7-38 (128)
282 PRK14841 undecaprenyl pyrophos 29.8 76 0.0016 21.2 2.9 34 85-118 24-57 (233)
283 cd04604 CBS_pair_KpsF_GutQ_ass 29.7 1E+02 0.0022 16.8 3.3 18 51-68 91-108 (114)
284 cd01027 TOPRIM_RNase_M5_like T 29.6 27 0.00058 18.9 0.7 23 80-102 49-71 (81)
285 PF06414 Zeta_toxin: Zeta toxi 29.5 1.6E+02 0.0034 18.8 5.1 43 93-136 78-124 (199)
286 cd08355 Glo_EDI_BRP_like_14 Th 29.5 70 0.0015 18.1 2.5 20 119-138 9-29 (122)
287 PF13289 SIR2_2: SIR2-like dom 29.4 1.2E+02 0.0027 17.7 3.9 23 112-134 119-142 (143)
288 cd04596 CBS_pair_DRTGG_assoc T 29.4 1E+02 0.0023 16.8 3.4 18 51-68 85-102 (108)
289 PHA02126 hypothetical protein 29.3 24 0.00052 20.6 0.5 57 87-143 67-131 (153)
290 cd06422 NTP_transferase_like_1 29.3 88 0.0019 20.1 3.2 26 93-118 29-54 (221)
291 cd02523 PC_cytidylyltransferas 29.3 1E+02 0.0022 20.0 3.5 27 93-119 28-54 (229)
292 cd09011 Glo_EDI_BRP_like_23 Th 29.2 73 0.0016 18.0 2.6 24 112-136 6-30 (120)
293 PRK14842 undecaprenyl pyrophos 29.0 82 0.0018 21.2 2.9 34 85-118 29-62 (241)
294 PF02679 ComA: (2R)-phospho-3- 29.0 75 0.0016 21.5 2.8 44 96-139 85-134 (244)
295 PLN02831 Bifunctional GTP cycl 29.0 1.4E+02 0.003 22.4 4.3 33 105-139 377-409 (450)
296 COG4866 Uncharacterized conser 28.8 2E+02 0.0043 19.8 6.4 49 50-100 202-250 (294)
297 TIGR02886 spore_II_AA anti-sig 28.7 1.1E+02 0.0024 16.9 5.2 38 96-136 59-96 (106)
298 PF04796 RepA_C: Plasmid encod 28.5 1.1E+02 0.0024 19.2 3.3 40 92-136 6-45 (161)
299 PRK07758 hypothetical protein; 28.5 78 0.0017 17.9 2.3 21 89-109 72-92 (95)
300 PF04555 XhoI: Restriction end 28.4 1.2E+02 0.0026 19.6 3.4 38 81-118 145-182 (196)
301 PRK14834 undecaprenyl pyrophos 28.2 98 0.0021 21.0 3.2 33 87-119 37-69 (249)
302 cd04883 ACT_AcuB C-terminal AC 28.0 91 0.002 15.7 3.5 25 111-135 44-69 (72)
303 PRK14832 undecaprenyl pyrophos 27.8 66 0.0014 21.8 2.4 34 85-118 39-72 (253)
304 PF04260 DUF436: Protein of un 27.7 1.7E+02 0.0036 18.6 4.8 51 90-140 42-95 (172)
305 cd04587 CBS_pair_CAP-ED_DUF294 27.6 1.1E+02 0.0025 16.7 3.2 17 52-68 91-107 (113)
306 PTZ00349 dehydrodolichyl dipho 27.5 74 0.0016 22.5 2.6 34 85-118 40-73 (322)
307 cd02922 FCB2_FMN Flavocytochro 27.4 1.3E+02 0.0029 21.4 3.9 41 94-134 130-170 (344)
308 cd07249 MMCE Methylmalonyl-CoA 27.4 48 0.001 18.7 1.6 27 111-138 3-30 (128)
309 cd07233 Glyoxalase_I Glyoxalas 27.4 1.2E+02 0.0026 16.9 4.0 25 112-137 4-29 (121)
310 PRK14833 undecaprenyl pyrophos 27.2 88 0.0019 21.0 2.8 33 86-118 26-58 (233)
311 COG2360 Aat Leu/Phe-tRNA-prote 27.1 1.9E+02 0.0042 19.1 5.2 81 42-135 112-194 (221)
312 PF01751 Toprim: Toprim domain 27.0 32 0.00068 19.2 0.7 33 80-113 64-96 (100)
313 PLN03042 Lactoylglutathione ly 27.0 1.3E+02 0.0028 19.2 3.5 27 111-138 30-57 (185)
314 cd08360 MhqB_like_C C-terminal 26.9 1.1E+02 0.0024 17.8 3.1 28 110-138 5-33 (134)
315 PRK09311 bifunctional 3,4-dihy 26.9 1.5E+02 0.0032 21.8 4.1 32 106-139 344-375 (402)
316 COG1212 KdsB CMP-2-keto-3-deox 26.8 2.1E+02 0.0045 19.4 4.6 47 93-141 27-73 (247)
317 cd09013 BphC-JF8_N_like N-term 26.6 1.1E+02 0.0024 17.2 3.0 29 109-138 7-36 (121)
318 cd06587 Glo_EDI_BRP_like This 26.5 73 0.0016 17.0 2.2 21 119-139 8-29 (112)
319 PRK14829 undecaprenyl pyrophos 26.3 77 0.0017 21.4 2.5 33 85-117 35-67 (243)
320 PF13222 DUF4030: Protein of u 26.2 1.6E+02 0.0035 17.9 6.4 59 93-151 17-90 (142)
321 PRK10240 undecaprenyl pyrophos 26.1 73 0.0016 21.2 2.3 32 87-118 16-47 (229)
322 PRK03824 hypA hydrogenase nick 25.9 60 0.0013 19.5 1.8 22 91-112 5-26 (135)
323 cd04189 G1P_TT_long G1P_TT_lon 25.9 1.1E+02 0.0023 20.0 3.1 34 93-126 30-63 (236)
324 PRK05309 30S ribosomal protein 25.8 1.6E+02 0.0034 17.7 6.4 55 84-138 52-110 (128)
325 PRK14840 undecaprenyl pyrophos 25.4 85 0.0018 21.3 2.6 34 85-118 43-76 (250)
326 cd08343 ED_TypeI_classII_C C-t 25.4 1.3E+02 0.0027 17.4 3.1 19 119-137 9-28 (131)
327 cd04181 NTP_transferase NTP_tr 25.2 98 0.0021 19.7 2.8 27 93-119 28-54 (217)
328 smart00116 CBS Domain in cysta 25.1 73 0.0016 13.6 3.4 17 52-68 25-41 (49)
329 cd06915 NTP_transferase_WcbM_l 25.1 1.1E+02 0.0024 19.5 3.1 27 93-119 28-54 (223)
330 cd08354 Glo_EDI_BRP_like_13 Th 25.0 1.1E+02 0.0024 17.1 2.8 19 119-137 10-29 (122)
331 cd04589 CBS_pair_CAP-ED_DUF294 25.0 1.3E+02 0.0028 16.4 4.2 27 42-68 79-105 (111)
332 TIGR01417 PTS_I_fam phosphoeno 24.9 1.8E+02 0.004 22.4 4.5 44 95-138 482-525 (565)
333 PF02334 RTP: Replication term 24.9 27 0.00059 20.2 0.2 24 87-110 28-51 (122)
334 cd09014 BphC-JF8_C_like C-term 24.8 1.2E+02 0.0027 18.6 3.2 28 109-137 7-35 (166)
335 PRK12303 tumor necrosis factor 24.6 1.3E+02 0.0028 17.9 2.9 29 108-136 123-151 (192)
336 PF02896 PEP-utilizers_C: PEP- 24.6 1.4E+02 0.0031 20.8 3.6 47 94-140 234-280 (293)
337 cd07239 BphC5-RK37_C_like C-te 24.6 1.2E+02 0.0025 18.2 2.9 27 110-137 6-33 (144)
338 cd04610 CBS_pair_ParBc_assoc T 24.5 1.3E+02 0.0028 16.2 3.6 17 52-68 85-101 (107)
339 PRK10310 PTS system galactitol 24.5 1.3E+02 0.0029 16.6 2.9 22 89-110 10-33 (94)
340 PRK08815 GTP cyclohydrolase; P 24.3 1.8E+02 0.0038 21.2 4.1 32 106-139 310-341 (375)
341 TIGR03527 selenium_YedF seleni 24.2 2.1E+02 0.0045 18.5 5.1 56 80-135 87-155 (194)
342 PF06399 GFRP: GTP cyclohydrol 24.2 66 0.0014 17.5 1.5 44 95-138 26-70 (83)
343 cd02538 G1P_TT_short G1P_TT_sh 24.2 1.2E+02 0.0026 19.9 3.2 28 93-120 30-57 (240)
344 cd08363 FosB FosB, a fosfomyci 24.2 1.2E+02 0.0025 17.7 2.8 26 111-137 3-29 (131)
345 COG0022 AcoB Pyruvate/2-oxoglu 24.2 1.5E+02 0.0033 20.9 3.5 28 80-107 255-282 (324)
346 PF12294 DUF3626: Protein of u 24.1 31 0.00066 23.8 0.4 23 78-100 191-213 (297)
347 cd04627 CBS_pair_14 The CBS do 23.9 1.5E+02 0.0032 16.7 3.5 21 49-69 97-118 (123)
348 COG0473 LeuB Isocitrate/isopro 23.9 1.3E+02 0.0027 21.6 3.2 48 80-131 5-52 (348)
349 PF01070 FMN_dh: FMN-dependent 23.6 1.5E+02 0.0033 21.2 3.7 40 95-134 123-162 (356)
350 TIGR00454 conserved hypothetic 23.6 1.7E+02 0.0036 18.6 3.6 39 93-131 26-64 (183)
351 cd06425 M1P_guanylylT_B_like_N 23.5 1.5E+02 0.0033 19.3 3.6 36 93-128 30-65 (233)
352 PRK14763 coenzyme PQQ biosynth 23.5 43 0.00093 13.7 0.6 9 129-137 11-19 (26)
353 PRK14839 undecaprenyl pyrophos 23.3 99 0.0022 20.8 2.6 34 85-118 30-63 (239)
354 TIGR03849 arch_ComA phosphosul 23.2 1.5E+02 0.0033 20.0 3.4 45 95-139 71-121 (237)
355 cd00145 POLBc DNA polymerase t 23.0 1.3E+02 0.0028 21.2 3.2 27 91-117 136-162 (323)
356 cd04607 CBS_pair_NTP_transfera 22.9 1.5E+02 0.0032 16.3 3.6 16 53-68 92-107 (113)
357 PRK13690 hypothetical protein; 22.9 2.2E+02 0.0047 18.3 4.8 52 89-140 48-102 (184)
358 PRK13368 3-deoxy-manno-octulos 22.9 1.9E+02 0.0041 18.9 3.9 40 93-134 26-66 (238)
359 COG0271 BolA Stress-induced mo 22.8 1.5E+02 0.0033 16.5 5.4 46 75-120 38-85 (90)
360 cd06588 PhnB_like Escherichia 22.7 1.4E+02 0.0031 17.2 3.0 27 113-139 4-31 (128)
361 cd04591 CBS_pair_EriC_assoc_eu 22.7 1.5E+02 0.0032 16.3 4.3 26 44-69 75-100 (105)
362 PF01697 Glyco_transf_92: Glyc 22.5 2.5E+02 0.0055 18.9 6.8 58 80-138 4-64 (285)
363 COG3357 Predicted transcriptio 22.4 1.2E+02 0.0026 17.0 2.3 34 94-136 34-70 (97)
364 PRK04017 hypothetical protein; 22.2 77 0.0017 19.1 1.7 23 80-102 69-91 (132)
365 TIGR03534 RF_mod_PrmC protein- 22.2 1.8E+02 0.0038 19.1 3.7 47 95-143 198-245 (251)
366 PRK14835 undecaprenyl pyrophos 22.1 97 0.0021 21.4 2.4 31 88-118 65-95 (275)
367 TIGR00151 ispF 2C-methyl-D-ery 21.9 2.1E+02 0.0047 17.8 4.2 32 83-115 63-94 (155)
368 cd01124 KaiC KaiC is a circadi 21.9 2.1E+02 0.0045 17.7 3.9 43 91-133 9-52 (187)
369 PF01255 Prenyltransf: Putativ 21.8 2.5E+02 0.0054 18.6 4.3 30 89-118 19-48 (223)
370 cd04590 CBS_pair_CorC_HlyC_ass 21.8 1.5E+02 0.0033 16.1 4.0 26 43-68 79-105 (111)
371 cd00218 GlcAT-I Beta1,3-glucur 21.7 2.1E+02 0.0046 19.1 3.7 43 87-131 72-117 (223)
372 COG1437 CyaB Adenylate cyclase 21.6 1.6E+02 0.0035 18.9 3.1 27 112-139 81-107 (178)
373 cd04615 CBS_pair_2 The CBS dom 21.5 1.6E+02 0.0034 16.1 3.8 17 52-68 91-107 (113)
374 cd04625 CBS_pair_12 The CBS do 21.4 1.6E+02 0.0034 16.1 4.2 20 49-68 87-106 (112)
375 PRK14838 undecaprenyl pyrophos 21.4 1.2E+02 0.0026 20.5 2.6 33 86-118 32-64 (242)
376 COG1064 AdhP Zn-dependent alco 21.3 2.8E+02 0.0061 19.9 4.5 42 91-136 174-215 (339)
377 PF01910 DUF77: Domain of unkn 21.2 1.7E+02 0.0036 16.3 3.5 23 95-117 51-73 (92)
378 cd04602 CBS_pair_IMPDH_2 This 21.2 1.6E+02 0.0035 16.2 3.7 18 51-68 91-108 (114)
379 TIGR00537 hemK_rel_arch HemK-r 21.1 2.2E+02 0.0048 17.7 4.9 17 122-138 148-164 (179)
380 PRK14827 undecaprenyl pyrophos 21.1 94 0.002 21.7 2.2 31 87-117 90-120 (296)
381 PF00633 HHH: Helix-hairpin-he 21.0 90 0.002 13.2 1.6 12 91-102 18-29 (30)
382 PF06564 YhjQ: YhjQ protein; 21.0 1.4E+02 0.003 20.2 2.9 43 90-134 11-54 (243)
383 cd07254 Glo_EDI_BRP_like_20 Th 21.0 1.6E+02 0.0034 16.5 3.0 17 121-137 13-30 (120)
384 TIGR01105 galF UTP-glucose-1-p 21.0 1.2E+02 0.0026 21.0 2.7 35 93-127 33-67 (297)
385 PRK11524 putative methyltransf 21.0 2.9E+02 0.0063 19.0 6.3 41 96-138 62-102 (284)
386 TIGR03310 matur_ygfJ molybdenu 20.9 2E+02 0.0043 17.8 3.6 28 93-120 24-51 (188)
387 cd06426 NTP_transferase_like_2 20.9 1.2E+02 0.0025 19.5 2.6 26 93-118 28-53 (220)
388 TIGR01440 conserved hypothetic 20.8 2.4E+02 0.0051 17.9 4.5 52 89-140 41-95 (172)
389 COG2242 CobL Precorrin-6B meth 20.8 2.5E+02 0.0054 18.2 4.9 40 93-132 114-153 (187)
390 PRK00517 prmA ribosomal protei 20.8 2.1E+02 0.0046 19.1 3.8 44 95-139 194-238 (250)
391 COG3623 SgaU Putative L-xylulo 20.8 1.7E+02 0.0037 19.9 3.2 24 92-115 93-116 (287)
392 PRK14828 undecaprenyl pyrophos 20.7 1.4E+02 0.003 20.4 2.9 31 88-118 51-81 (256)
393 KOG0524 Pyruvate dehydrogenase 20.7 1.8E+02 0.0038 20.3 3.3 28 80-107 291-318 (359)
394 cd04599 CBS_pair_GGDEF_assoc2 20.7 1.6E+02 0.0034 15.8 4.1 25 44-68 75-99 (105)
395 PRK07198 hypothetical protein; 20.7 1.7E+02 0.0037 21.5 3.4 47 84-139 328-375 (418)
396 PF01861 DUF43: Protein of unk 20.6 1.8E+02 0.0039 19.7 3.3 65 75-141 110-180 (243)
397 cd04642 CBS_pair_29 The CBS do 20.6 1.8E+02 0.0039 16.4 3.6 17 52-68 103-120 (126)
398 cd04635 CBS_pair_22 The CBS do 20.5 1.7E+02 0.0037 16.2 3.5 25 44-68 91-116 (122)
399 PRK05450 3-deoxy-manno-octulos 20.4 2.4E+02 0.0052 18.5 4.0 41 93-135 26-66 (245)
400 PRK14830 undecaprenyl pyrophos 20.4 1.6E+02 0.0034 20.1 3.0 30 89-118 47-76 (251)
401 KOG2509 Seryl-tRNA synthetase 20.3 1.1E+02 0.0025 22.6 2.5 46 94-143 189-234 (455)
402 COG0100 RpsK Ribosomal protein 20.3 2.1E+02 0.0047 17.2 6.2 59 81-139 50-112 (129)
403 cd04585 CBS_pair_ACT_assoc2 Th 20.3 1.7E+02 0.0037 16.1 3.6 16 53-68 101-116 (122)
404 TIGR03211 catechol_2_3 catecho 20.3 1.6E+02 0.0035 20.1 3.3 29 108-137 145-174 (303)
405 PLN02862 2-C-methyl-D-erythrit 20.3 2E+02 0.0044 19.1 3.4 40 76-115 114-154 (216)
406 cd06259 YdcF-like YdcF-like. Y 20.1 2.1E+02 0.0046 17.1 3.6 49 81-132 70-119 (150)
407 PF10237 N6-adenineMlase: Prob 20.0 2.4E+02 0.0052 17.7 4.3 61 76-143 85-148 (162)
No 1
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.92 E-value=3.5e-24 Score=129.64 Aligned_cols=128 Identities=19% Similarity=0.247 Sum_probs=101.1
Q ss_pred CCceeEecCCCCCcchhHHHHHHHHhHhhCCC---cHHHhhhHHHHHhccCCceEEEEECCeEEEEEEEEecC-----CC
Q 031671 3 SNGTVTELQRNSTNWTVVVDEIVKMEKKIFPK---HESLARSFDEELKKKNSGLLYIQIHGQVVGHVMYAWPT-----SL 74 (155)
Q Consensus 3 ~~~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~-----~~ 74 (155)
++++||+++++ |++.+..+.....+. .......+...+.++...++++..++++||++.+.... ..
T Consensus 2 ~~~~ir~a~~~------D~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ivG~~~~~~~~~~~~~~~ 75 (144)
T PRK10146 2 PACELRPATQY------DTDAVYALICELKQAEFDHQAFRVGFNANLRDPNMRYHLALLDGEVVGMIGLHLQFHLHHVNW 75 (144)
T ss_pred CccEEeeCcHh------hHHHHHHHHHHHhcccCCHHHHHHHHHHHhcCCCceEEEEEECCEEEEEEEEEecccccccch
Confidence 46899999999 777777766543322 22233445555555555667777899999999986421 12
Q ss_pred eEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEE
Q 031671 75 SASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 75 ~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~ 136 (155)
.++|..++|+|+|||+|+|+.|++++++.|++.|+..+.+.+...|.+|++||+++||+..+
T Consensus 76 ~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~ 137 (144)
T PRK10146 76 IGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSH 137 (144)
T ss_pred hheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcCCchhh
Confidence 45788999999999999999999999999999999999999999999999999999998765
No 2
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.92 E-value=3.2e-23 Score=122.12 Aligned_cols=132 Identities=23% Similarity=0.307 Sum_probs=105.9
Q ss_pred HHHHHHHHhHhhCCCcHHHhhhHHHHHh-ccCCceEEEEECCe-EEEEEEEEecCCC---eEEEEEEEEccCCCCCChHH
Q 031671 20 VVDEIVKMEKKIFPKHESLARSFDEELK-KKNSGLLYIQIHGQ-VVGHVMYAWPTSL---SASITKLAVKENYRGQGHGE 94 (155)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~vG~~~~~~~~~~---~~~i~~~~v~~~~r~~Gig~ 94 (155)
.++.+.++....++.+..... ...+. +.+..++++.+++. .||++.+..+... .++|..++|+++|||+|||+
T Consensus 26 ~l~~im~Li~k~lsepyS~~t--yrYf~~~wp~~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~ 103 (165)
T KOG3139|consen 26 YLADIMRLIDKDLSEPYSIYT--YRYFVPNWPCFCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGK 103 (165)
T ss_pred HHHHHHHHHhhhcCchhHHHH--HHhcccCCceEEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHH
Confidence 455677777777776554322 22222 22334455554333 6999999865443 59999999999999999999
Q ss_pred HHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEeccccCCCceeEeee
Q 031671 95 ALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGFYSADRPAYERTF 153 (155)
Q Consensus 95 ~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~~~~~~m~~ 153 (155)
+|++.+++.++.+|+..+.+.+...|.+|.++|+++||+..++...||.++.|++.|.+
T Consensus 104 aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r~~~YYlng~dA~rl~L 162 (165)
T KOG3139|consen 104 ALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYESLGFKRDKRLFRYYLNGMDALRLKL 162 (165)
T ss_pred HHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHhcCceEecceeEEEECCcceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999998876
No 3
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.92 E-value=9.9e-23 Score=125.51 Aligned_cols=147 Identities=22% Similarity=0.333 Sum_probs=108.9
Q ss_pred CCCCceeEecCCCCCcchhHHHHHHHHhHhh--CC----CcHHHhhhHHHHHhc-cCCceEEEEECCeEEEEEEEEecC-
Q 031671 1 MGSNGTVTELQRNSTNWTVVVDEIVKMEKKI--FP----KHESLARSFDEELKK-KNSGLLYIQIHGQVVGHVMYAWPT- 72 (155)
Q Consensus 1 M~~~~~ir~~~~~d~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vG~~~~~~~~- 72 (155)
|+ .+.||+++++ |++.+.++.... +. .+......+...+.. .....+++..++++||++.+....
T Consensus 1 ~~-~i~lr~~~~~------D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~~ 73 (162)
T PRK10140 1 MS-EIVIRHAETR------DYEAIRQIHAQPEVYHNTLQVPHPSDHMWQERLADRPGIKQLVACIDGDVVGHLTIDVQQR 73 (162)
T ss_pred CC-ccEEEecchh------hHHHHHHHHhCcccccccccCCCcCHHHHHHHhhcCCCcEEEEEEECCEEEEEEEEecccc
Confidence 54 5899999999 677777776532 11 111122334444333 233456666789999999986421
Q ss_pred ---CCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHh-CCccEEEEEEecCCchhHhHHHHcCeEEEEEEeccccC-CC-
Q 031671 73 ---SLSASITKLAVKENYRGQGHGEALLEAAIKKCRT-RTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGFYSA-DR- 146 (155)
Q Consensus 73 ---~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~-~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~-~~- 146 (155)
.+.+.+ .++|+|+|||+|+|+.|++.+++++++ .|...+.+.+.+.|.+|++||+|+||+..+..+.++.. +.
T Consensus 74 ~~~~~~~~~-~~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~~~~~~~~~~~ 152 (162)
T PRK10140 74 PRRSHVADF-GICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEY 152 (162)
T ss_pred cccceEEEE-EEEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEeecccceeeCCeE
Confidence 223444 599999999999999999999999998 59999999999999999999999999999988766543 22
Q ss_pred -ceeEeeecC
Q 031671 147 -PAYERTFLK 155 (155)
Q Consensus 147 -~~~~m~~~~ 155 (155)
|.+.|.+++
T Consensus 153 ~d~~~~~~~~ 162 (162)
T PRK10140 153 VDAYYMARVK 162 (162)
T ss_pred EEEEEEEecC
Confidence 888998875
No 4
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.91 E-value=1.2e-22 Score=123.24 Aligned_cols=141 Identities=23% Similarity=0.322 Sum_probs=106.7
Q ss_pred ceeEecCCCCCcchhHHHHHHHHhHhhCCCcHHHhhhHHHHHhccCCceEEEEECCeEEEEEEEEecCCCeEEEEEEEEc
Q 031671 5 GTVTELQRNSTNWTVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVK 84 (155)
Q Consensus 5 ~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~ 84 (155)
++||+++.+ |++.+..+.......++.. ..+... .......+.+..++++||++.+... .+...+..++|+
T Consensus 2 ~~iR~~~~~------D~~~l~~l~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~vG~~~~~~~-~~~~~~~~i~v~ 72 (146)
T PRK09491 2 NTISSLTPA------DLPAAYHIEQRAHAFPWSE-KTFASN-QGERYLNLKLTVNGQMAAFAITQVV-LDEATLFNIAVD 72 (146)
T ss_pred cchhcCChh------hhHHHHHHHHhcCCCCCCH-HHHHHH-HhcCceEEEEEECCeEEEEEEEEee-cCceEEEEEEEC
Confidence 679999999 7888888766554332221 122221 1112222344568999999988643 235667889999
Q ss_pred cCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEeccccC---CCceeEeeec
Q 031671 85 ENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGFYSA---DRPAYERTFL 154 (155)
Q Consensus 85 ~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~---~~~~~~m~~~ 154 (155)
|+|||+|+|+.+++.+++.+++.++..+.+.+...|.+|.+||+|+||+..+..+.++.. -.|.++|.+.
T Consensus 73 ~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~~~~~d~~~~~~~ 145 (146)
T PRK09491 73 PDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEVTIRRNYYPTADGREDAIIMALP 145 (146)
T ss_pred HHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHHcCCEEeeeeeccccCCCCceeEEEEecc
Confidence 999999999999999999999999999999999999999999999999999888877643 2388888764
No 5
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.91 E-value=8.9e-23 Score=121.44 Aligned_cols=129 Identities=31% Similarity=0.395 Sum_probs=102.5
Q ss_pred HHHHHHHhHhhCCCcHHHhhhHHHHHhccCCceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHH
Q 031671 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAA 100 (155)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~ 100 (155)
++.+.++....|+.+.. ...+...+......++++..++++||++.+... .....+..++|+|+|||+|+|+.|++.+
T Consensus 2 ~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~-~~~~~i~~~~v~~~~rg~G~g~~ll~~~ 79 (131)
T TIGR01575 2 LKAVLEIEAAAFAFPWT-EAQFAEELANYHLCYLLARIGGKVVGYAGVQIV-LDEAHILNIAVKPEYQGQGIGRALLREL 79 (131)
T ss_pred HHHHHHHHHhhCCCCCC-HHHHHHHhcCCCceEEEEecCCeEEEEEEEEec-CCCeEEEEEEECHHHcCCCHHHHHHHHH
Confidence 56677777777776432 234444444444445556668999999997643 3456788999999999999999999999
Q ss_pred HHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEeccccCC-CceeEe
Q 031671 101 IKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGFYSAD-RPAYER 151 (155)
Q Consensus 101 ~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~-~~~~~m 151 (155)
++.+++.+++.+.+.+.+.|..+++||+++||+..+....++..+ .+.++|
T Consensus 80 ~~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~~~~~~~ 131 (131)
T TIGR01575 80 IDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNEIAIRRNYYPDPGEDAIVM 131 (131)
T ss_pred HHHHHHcCCCeEEEEEecccHHHHHHHHHcCCCccccccccccCCCcccccC
Confidence 999999999999999999999999999999999999988887665 577665
No 6
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.90 E-value=2.1e-22 Score=132.92 Aligned_cols=145 Identities=15% Similarity=0.153 Sum_probs=111.6
Q ss_pred CCCceeEecCCCCCcchhHHHHHHHHhHhhCC---CcHHHhhhHHHHHhccCCceEEEEECCeEEEEEEEEe-cCCCeEE
Q 031671 2 GSNGTVTELQRNSTNWTVVVDEIVKMEKKIFP---KHESLARSFDEELKKKNSGLLYIQIHGQVVGHVMYAW-PTSLSAS 77 (155)
Q Consensus 2 ~~~~~ir~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~-~~~~~~~ 77 (155)
+..+.||+++++ |++.+.++....++ .+......+..... ....++++..+|++||++.+.. .....++
T Consensus 113 ~~~~~IR~a~~~------D~~~l~~L~~~v~~~~~~~~~~~~~l~~~~~-~~~~~~v~~~~g~iVG~~~~~~~~~~~~~e 185 (266)
T TIGR03827 113 PEGFTLRIATED------DADAMAALYRKVFPTYPFPIHDPAYLLETMK-SNVVYFGVEDGGKIIALASAEMDPENGNAE 185 (266)
T ss_pred CCceEEEECCHH------HHHHHHHHHHHHhccCCCCccCHHHHHHHhc-CCcEEEEEEECCEEEEEEEEecCCCCCcEE
Confidence 345889999998 78888887776653 22212223333332 3445667777999999998743 3345788
Q ss_pred EEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEeccccC-C--CceeEeee
Q 031671 78 ITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGFYSA-D--RPAYERTF 153 (155)
Q Consensus 78 i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~-~--~~~~~m~~ 153 (155)
|..++|+|+|||+|+|+.|++++++++++.|+..+.+.+...|.+++++|+|+||+..++..+.... + .|..++.|
T Consensus 186 I~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~l~n~~~i~G~~~d~~i~~k 264 (266)
T TIGR03827 186 MTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFARLGYAYGGTLVNNTNISGGFESMNIWYK 264 (266)
T ss_pred EEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHHcCCccccEEeecceecCCcccceeeee
Confidence 9999999999999999999999999999999999999999999999999999999999998755443 3 26655554
No 7
>PRK03624 putative acetyltransferase; Provisional
Probab=99.90 E-value=4.2e-22 Score=119.77 Aligned_cols=128 Identities=21% Similarity=0.312 Sum_probs=98.3
Q ss_pred CceeEecCCCCCcchhHHHHHHHHhHhhC-CCcH-HHhhhHHHHHhccCCceEEEEECCeEEEEEEEEecCCCeEEEEEE
Q 031671 4 NGTVTELQRNSTNWTVVVDEIVKMEKKIF-PKHE-SLARSFDEELKKKNSGLLYIQIHGQVVGHVMYAWPTSLSASITKL 81 (155)
Q Consensus 4 ~~~ir~~~~~d~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~ 81 (155)
++.||+++++ |++.+.++..... ..++ .....+......+...++++..++++||++.+.. ......+..+
T Consensus 2 ~~~ir~~~~~------d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~-~~~~~~i~~i 74 (140)
T PRK03624 2 AMEIRVFRQA------DFEAVIALWERCDLTRPWNDPEMDIERKLNHDPSLFLVAEVGGEVVGTVMGGY-DGHRGWAYYL 74 (140)
T ss_pred ceEEEEcccc------cHHHHHHHHHhcCCCcchhhHHHHHHHHhcCCCceEEEEEcCCcEEEEEEeec-cCCCceEEEE
Confidence 5889999999 6777776665541 1111 1112233333334455677777899999998763 3345677889
Q ss_pred EEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEE
Q 031671 82 AVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 82 ~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~ 138 (155)
+|+|+|||+|+|+.|++.+.+.+++.|++.+.+.+.+.|.+++++|+|+||+..+..
T Consensus 75 ~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~~ 131 (140)
T PRK03624 75 AVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEEQDRI 131 (140)
T ss_pred EECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHcCCccccEE
Confidence 999999999999999999999999999999999999999999999999999987654
No 8
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.90 E-value=5.4e-22 Score=125.24 Aligned_cols=131 Identities=17% Similarity=0.231 Sum_probs=97.9
Q ss_pred CceeEecCCCCCcchhHHHHHHHHhHhhCCC---------cHHHhhhH----HHHHhcc-CCceE-EEEECCeEEEEEEE
Q 031671 4 NGTVTELQRNSTNWTVVVDEIVKMEKKIFPK---------HESLARSF----DEELKKK-NSGLL-YIQIHGQVVGHVMY 68 (155)
Q Consensus 4 ~~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~----~~~~~~~-~~~~~-~~~~~~~~vG~~~~ 68 (155)
.+.||+++++ |.+.+.++....+.. +......+ .....+. ....+ +...+|++||++.+
T Consensus 43 ~~~lR~~~~~------D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l 116 (191)
T TIGR02382 43 DPGARVATET------DIPALRQLASAAFALSRFRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTL 116 (191)
T ss_pred CCcceeCChh------hHHHHHHHHHHHhhccccCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEE
Confidence 3578999999 777787777665321 11111111 1111122 12223 33448899999998
Q ss_pred EecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEec
Q 031671 69 AWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQG 140 (155)
Q Consensus 69 ~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~ 140 (155)
.......++++.++|+|+|||+|+|+.|++++++++++.|+..+.+.|...|.+|++||+|+||+..++...
T Consensus 117 ~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~~~~ 188 (191)
T TIGR02382 117 RELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIRSGANIESTAYW 188 (191)
T ss_pred EecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCccccceee
Confidence 755555678999999999999999999999999999999999999999999999999999999998886543
No 9
>PTZ00330 acetyltransferase; Provisional
Probab=99.90 E-value=5.7e-22 Score=120.32 Aligned_cols=128 Identities=17% Similarity=0.270 Sum_probs=92.0
Q ss_pred CCCCceeEecCCCCCcchhHHHHHHHHhHhhCCCcH---HHhhhHHHHHhccC--CceEEEEECCeEEEEEEEEec----
Q 031671 1 MGSNGTVTELQRNSTNWTVVVDEIVKMEKKIFPKHE---SLARSFDEELKKKN--SGLLYIQIHGQVVGHVMYAWP---- 71 (155)
Q Consensus 1 M~~~~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~vG~~~~~~~---- 71 (155)
|+.+++||+++++ |++.+..+.......+. .....+........ ...+++..+|++||++.+...
T Consensus 3 ~~~~~~ir~~~~~------D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~ 76 (147)
T PTZ00330 3 MSGSLELRDLEEG------DLGSVLELLSHLTSAPALSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFT 76 (147)
T ss_pred CcceEEEEEcccc------cHHHHHHHHHHhcCCCccchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccc
Confidence 6677999999999 66677666554432211 11112222111111 233444458899999987632
Q ss_pred --CCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEE
Q 031671 72 --TSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTL 137 (155)
Q Consensus 72 --~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~ 137 (155)
....++|..++|+|+|||+|+|+.|++++++++++.|+..+.+. .|.+|++||+++||+....
T Consensus 77 ~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~---~n~~a~~~y~k~GF~~~~~ 141 (147)
T PTZ00330 77 RGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILD---CTEDMVAFYKKLGFRACER 141 (147)
T ss_pred cCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEe---cChHHHHHHHHCCCEEece
Confidence 11257888999999999999999999999999999998888776 5889999999999998764
No 10
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.89 E-value=2.5e-22 Score=125.43 Aligned_cols=143 Identities=27% Similarity=0.412 Sum_probs=113.5
Q ss_pred CceeEecCCCCCcchhHHH--HHHHHhHhhCCC-cHHHhhhHHHHHhccCCceEEEEE---CC----eEEEEEEEEecCC
Q 031671 4 NGTVTELQRNSTNWTVVVD--EIVKMEKKIFPK-HESLARSFDEELKKKNSGLLYIQI---HG----QVVGHVMYAWPTS 73 (155)
Q Consensus 4 ~~~ir~~~~~d~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~vG~~~~~~~~~ 73 (155)
...+|+++.. |+. .+..+....|.. .......+...+.......+++.. ++ +++|++......+
T Consensus 11 ~~~ir~~~~~------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~ 84 (177)
T COG0456 11 KVTIREAINK------DLLDVALAALEARTFDIRLPWSREYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLVRVVDG 84 (177)
T ss_pred ceehhhhhhc------ccchHHHHHHhhhcCCCCCcchHHHHHHHHhhCcceeEEEEecccCCCcccceeEEEEEEEecC
Confidence 4567777777 555 677777777764 223345666666666666666665 23 5999999853222
Q ss_pred -----CeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCc-cEEEEEEecCCchhHhHHHHcCeEEEEEEeccccCCCc
Q 031671 74 -----LSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTV-LCITLHVDPLRTPAVNLYKKFGFQVDTLIQGFYSADRP 147 (155)
Q Consensus 74 -----~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~-~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~~~ 147 (155)
..++|..++|+|+|||+|+|++|++.+++.+.+.+. ..+.+.|..+|..|++||+++||+..+...+||.++.+
T Consensus 85 ~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~~~yy~~~~~ 164 (177)
T COG0456 85 RPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRKLGFEVVKIRKNYYADGNG 164 (177)
T ss_pred CccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHHcCCEEEeeehhhccCCcc
Confidence 278999999999999999999999999999999986 89999999999999999999999999999999998764
Q ss_pred -eeEee
Q 031671 148 -AYERT 152 (155)
Q Consensus 148 -~~~m~ 152 (155)
+..|.
T Consensus 165 ~a~~~~ 170 (177)
T COG0456 165 DALLML 170 (177)
T ss_pred hhHHHH
Confidence 65554
No 11
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.89 E-value=3e-21 Score=122.18 Aligned_cols=131 Identities=18% Similarity=0.274 Sum_probs=96.3
Q ss_pred CceeEecCCCCCcchhHHHHHHHHhHhhCC---------CcHHHhhhHHHHHh----cc-CCceEEEE-ECCeEEEEEEE
Q 031671 4 NGTVTELQRNSTNWTVVVDEIVKMEKKIFP---------KHESLARSFDEELK----KK-NSGLLYIQ-IHGQVVGHVMY 68 (155)
Q Consensus 4 ~~~ir~~~~~d~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~----~~-~~~~~~~~-~~~~~vG~~~~ 68 (155)
+..||+++++ |++.+.++....+. ........+...+. .. ....+++. .++++||++.+
T Consensus 46 ~~~iR~a~~~------D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l 119 (194)
T PRK10975 46 TTGARVATET------DIPALRQLAAQAFAQSRFRAPWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTL 119 (194)
T ss_pred CCCcccCCcc------cHHHHHHHHHHHhhhccccCccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEE
Confidence 4578888888 56666666554322 11111112222211 11 22344444 36899999998
Q ss_pred EecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEec
Q 031671 69 AWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQG 140 (155)
Q Consensus 69 ~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~ 140 (155)
.......+++..++|+|+|||+|+|+.|++.+++++++.|++.+.+.+...|.+|++||+|+||+..++...
T Consensus 120 ~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~~~~ 191 (194)
T PRK10975 120 RELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIRSGANIESTAYW 191 (194)
T ss_pred EecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHHCCCeEeEEEee
Confidence 754455688988999999999999999999999999999999999999999999999999999999987653
No 12
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.88 E-value=2.9e-21 Score=112.67 Aligned_cols=138 Identities=20% Similarity=0.197 Sum_probs=98.8
Q ss_pred CCceeEecCCCCCc-chhHHHHHHHHhHhhCCCcHHHhhhHHHH-Hhcc-CCceEEEEE---CCeEEEEEEEEe-----c
Q 031671 3 SNGTVTELQRNSTN-WTVVVDEIVKMEKKIFPKHESLARSFDEE-LKKK-NSGLLYIQI---HGQVVGHVMYAW-----P 71 (155)
Q Consensus 3 ~~~~ir~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~---~~~~vG~~~~~~-----~ 71 (155)
+.+.||+++++|.+ +...++++..++.-..+.... ...+... +.++ -..+.++.. ++.++|++.+.. .
T Consensus 2 ~~~~IR~at~~D~~~i~rLikela~Fek~~~~v~~t-e~~l~~~~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~ 80 (163)
T KOG3216|consen 2 DNIRIRLATPKDCEDILRLIKELAEFEKLEDQVEAT-EENLARDGFIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWL 80 (163)
T ss_pred CceEEEecCcccHHHHHHHHHHHHHHHHhccchhhc-hhhhhhhhccCCCccEEEEEEEecCCCceeEEeeeeccccccc
Confidence 35899999999533 223333444443333332211 2233332 2333 233333333 788999998863 3
Q ss_pred CCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEecc
Q 031671 72 TSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGF 141 (155)
Q Consensus 72 ~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~ 141 (155)
.....+|.+++|.|+|||+|+|+.|++.+.+.|.+.|+.++.+.|...|++|+.||++.|++......-+
T Consensus 81 ~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k~gaq~l~~W~l~ 150 (163)
T KOG3216|consen 81 GKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEKVGAQDLKEWRLF 150 (163)
T ss_pred ccceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHHhCccccceeEEE
Confidence 3468899999999999999999999999999999999999999999999999999999999987764333
No 13
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.88 E-value=2.9e-21 Score=118.26 Aligned_cols=125 Identities=16% Similarity=0.128 Sum_probs=93.5
Q ss_pred eEecCCCCCcchhHHHHHHHHhHhhCCCcHHHhhhHHHHHhccCCceEEEE-ECCeEEEEEEEEe--cCCCeEEEEEEEE
Q 031671 7 VTELQRNSTNWTVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIQ-IHGQVVGHVMYAW--PTSLSASITKLAV 83 (155)
Q Consensus 7 ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~--~~~~~~~i~~~~v 83 (155)
||+++.+ |++.+.++..............+...........+++. .++++||++.+.. .......+..++|
T Consensus 1 IR~~~~~------D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V 74 (157)
T TIGR02406 1 FRPPRIE------DGAGIWELVKDCPPLDLNSSYAYLLLCTDFADTSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAV 74 (157)
T ss_pred CCCCccc------cHHHHHHHHHhCCCCCcccceehhhhhhhcCCcEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEE
Confidence 5778888 78888888777643221111111122222334456666 4779999987543 3345678889999
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEE
Q 031671 84 KENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTL 137 (155)
Q Consensus 84 ~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~ 137 (155)
+|+|||+|+|++|++.+++++++.++..+.+.|.+.|.+|++||+|+||+....
T Consensus 75 ~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~k~G~~~~~~ 128 (157)
T TIGR02406 75 DPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFKALARRRGVH 128 (157)
T ss_pred ChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHHHhCcccCCC
Confidence 999999999999999999999999999999999999999999999999987543
No 14
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.87 E-value=3.3e-20 Score=116.75 Aligned_cols=146 Identities=16% Similarity=0.286 Sum_probs=106.6
Q ss_pred CCceeEecCCCCCcchhHHHHHHHHhHhh-----C-CCc-H---HHhhhHHHHHhccCCceEEEEECCeEEEEEEEEecC
Q 031671 3 SNGTVTELQRNSTNWTVVVDEIVKMEKKI-----F-PKH-E---SLARSFDEELKKKNSGLLYIQIHGQVVGHVMYAWPT 72 (155)
Q Consensus 3 ~~~~ir~~~~~d~~~~~~~~~~~~~~~~~-----~-~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~ 72 (155)
..+.+|+++++ |++.+.++.... + ..+ . .....+...........+++..+|++||++.+...+
T Consensus 5 ~~l~lR~~~~~------D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~iG~~~~~~~~ 78 (186)
T PRK15130 5 HSVKLRPLERE------DLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVECDGEKAGLVELVEIN 78 (186)
T ss_pred CeeEEecCCHH------HHHHHHHHhcChHHHhhcCCcccccHHHHHHHHHHhhhcccCcEEEEEECCEEEEEEEEEeec
Confidence 35789999999 566666654322 1 111 1 111122233334455567777899999999886432
Q ss_pred --CCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhC-CccEEEEEEecCCchhHhHHHHcCeEEEEEEecccc-CCC--
Q 031671 73 --SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTR-TVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGFYS-ADR-- 146 (155)
Q Consensus 73 --~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~-~~~-- 146 (155)
...+.+ .++|+|+|||+|+|+.+++.+++++++. |++++.+.+...|.+|+++|+|+||+..+..+.++. ++.
T Consensus 79 ~~~~~~~~-~~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~~~~~~~~~~g~~~ 157 (186)
T PRK15130 79 HVHRRAEF-QIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEGELIHEFFINGEYR 157 (186)
T ss_pred CCCCeEEE-EEEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCCEEEEEEeheEEECCEEE
Confidence 234555 6999999999999999999999999875 999999999999999999999999999998875544 333
Q ss_pred ceeEeeecC
Q 031671 147 PAYERTFLK 155 (155)
Q Consensus 147 ~~~~m~~~~ 155 (155)
|.+.|.+++
T Consensus 158 d~~~~~~~~ 166 (186)
T PRK15130 158 NTIRMCIFQ 166 (186)
T ss_pred EEEEEEeeH
Confidence 778887753
No 15
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.87 E-value=4.9e-20 Score=112.77 Aligned_cols=132 Identities=22% Similarity=0.346 Sum_probs=96.3
Q ss_pred eEecCCCCCcchhHHHHHHHHhHhh-----CCC-----cHHHhhhHH-HHHhccCCceEEEEE-CCeEEEEEEEEec--C
Q 031671 7 VTELQRNSTNWTVVVDEIVKMEKKI-----FPK-----HESLARSFD-EELKKKNSGLLYIQI-HGQVVGHVMYAWP--T 72 (155)
Q Consensus 7 ir~~~~~d~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~vG~~~~~~~--~ 72 (155)
||+++.+ |++.+..+.... +.. .......+. ....+.....+++.. +|++||++.+... .
T Consensus 1 IR~~~~~------D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~~ 74 (155)
T PF13420_consen 1 IRPATEE------DLEEILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDPY 74 (155)
T ss_dssp EEE--GG------GHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSSG
T ss_pred CCCCcHH------HHHHHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeecc
Confidence 6899999 666666665431 211 122222333 332344566677776 9999999998752 2
Q ss_pred CCeEEEEEEEEccCCCCCChHHHHHHHHHHHH-HhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEeccccCC
Q 031671 73 SLSASITKLAVKENYRGQGHGEALLEAAIKKC-RTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGFYSAD 145 (155)
Q Consensus 73 ~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~-~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~ 145 (155)
...+.+ .++|.|++|++|+|+.|+..+++.| .+.|++++.+.+...|.++++||+++||+..++.++++..+
T Consensus 75 ~~~~~~-~~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~~~~~~~ 147 (155)
T PF13420_consen 75 NHTAEL-SIYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGELKDHIFIN 147 (155)
T ss_dssp TTEEEE-EEEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEEEEEEET
T ss_pred CCEEEE-eeEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEecEEEEC
Confidence 345666 5888899999999999999999999 78899999999999999999999999999999998776543
No 16
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.87 E-value=4.2e-20 Score=112.72 Aligned_cols=127 Identities=24% Similarity=0.317 Sum_probs=95.7
Q ss_pred eEecC-CCCCcchhHHHHHHHHhHhh----C---CCcHHHhhhHHHHHh-ccCCceEEEEECCeEEEEEEEEe------c
Q 031671 7 VTELQ-RNSTNWTVVVDEIVKMEKKI----F---PKHESLARSFDEELK-KKNSGLLYIQIHGQVVGHVMYAW------P 71 (155)
Q Consensus 7 ir~~~-~~d~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vG~~~~~~------~ 71 (155)
+|+++ .+ |++.+.++.... + .......+.+.+.+. ++....+++..+|+++|++.+.. .
T Consensus 1 ~R~a~~~~------Dl~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~ 74 (152)
T PF13523_consen 1 LRPATTPD------DLPLILQWLNQPHVREFWDQDPSQEWVEEYPEQLEADPGHHPYVAEDDGEPIGYFEIYWPDEDYDA 74 (152)
T ss_dssp EEE---GG------GHHHHHHHHTSHHHHCCH-CCCTHHHHHHHHHHHCHTTTEEEEEEEETTEEEEEEEEEEGGGSS--
T ss_pred CeeCccHH------HHHHHHHHHHhHHHHHHccCCCCHHHHHHHHhhhcccCCceEEEEEECCEEEEEEEEecccccccC
Confidence 68888 77 777777776543 2 112233345555554 44556788888999999998864 1
Q ss_pred CCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhC-CccEEEEEEecCCchhHhHHHHcCeEEEEEEe
Q 031671 72 TSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTR-TVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 72 ~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 139 (155)
.+....++.++++|++||+|+|+.+++.+++.+++. +++.+.+.+.+.|.+|+++|+|+||+.+++..
T Consensus 75 ~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~~ 143 (152)
T PF13523_consen 75 DDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKVGEFE 143 (152)
T ss_dssp -TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEEEEEE
T ss_pred CCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEeeEEE
Confidence 345778888999999999999999999999999988 89999999999999999999999999999875
No 17
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.87 E-value=7.7e-21 Score=104.57 Aligned_cols=78 Identities=40% Similarity=0.570 Sum_probs=72.4
Q ss_pred EEECCeEEEEEEEEecC-----CCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHc
Q 031671 56 IQIHGQVVGHVMYAWPT-----SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKF 130 (155)
Q Consensus 56 ~~~~~~~vG~~~~~~~~-----~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~ 130 (155)
++.+|++||++.+.... ...++|..++|+|+|||+|+|+.|++++++.+++.|+..+.+.+.+.|..+.+||+|+
T Consensus 1 ~~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~ 80 (83)
T PF00583_consen 1 AEEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKL 80 (83)
T ss_dssp EEETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHT
T ss_pred CcCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHc
Confidence 45799999999988533 3699999999999999999999999999999999999999999999999999999999
Q ss_pred CeE
Q 031671 131 GFQ 133 (155)
Q Consensus 131 Gf~ 133 (155)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 18
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.86 E-value=2.4e-19 Score=112.16 Aligned_cols=145 Identities=12% Similarity=0.153 Sum_probs=103.8
Q ss_pred CCceeEecCCCCCcchhHHHHHHHHhH--hh-------CCC----cHHHhhhHHHHHh---ccCCceEEEEECCeEEEEE
Q 031671 3 SNGTVTELQRNSTNWTVVVDEIVKMEK--KI-------FPK----HESLARSFDEELK---KKNSGLLYIQIHGQVVGHV 66 (155)
Q Consensus 3 ~~~~ir~~~~~d~~~~~~~~~~~~~~~--~~-------~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~vG~~ 66 (155)
+.+.+|+++++ |++.+..+.. .. ++. .+.....+..... ......+++..+|++||++
T Consensus 9 ~rl~Lr~~~~~------D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~iG~~ 82 (179)
T PRK10151 9 ESLELHAVDES------HVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVL 82 (179)
T ss_pred CcEEEEeCCHH------HHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEECCEEEEEE
Confidence 45789999999 5555555441 11 121 1222233332221 1122346666789999999
Q ss_pred EEEec--CCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhC-CccEEEEEEecCCchhHhHHHHcCeEEEEEEecccc
Q 031671 67 MYAWP--TSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTR-TVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGFYS 143 (155)
Q Consensus 67 ~~~~~--~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~ 143 (155)
.+... ....+++ .+.++|+|||+|+|+.+++.+++++++. +++++.+.+.+.|.+|+++++|+||+..+..+....
T Consensus 83 ~l~~~~~~~~~~~i-g~~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~~~~~~ 161 (179)
T PRK10151 83 SFNRIEPLNKTAYI-GYWLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGCLKQAEY 161 (179)
T ss_pred EEEeeccCCCceEE-EEEEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeEeccceE
Confidence 88642 2346777 5689999999999999999999999975 899999999999999999999999999998875433
Q ss_pred -CC--CceeEeeec
Q 031671 144 -AD--RPAYERTFL 154 (155)
Q Consensus 144 -~~--~~~~~m~~~ 154 (155)
.+ .|.++|.++
T Consensus 162 ~~g~~~D~~~~~~~ 175 (179)
T PRK10151 162 LNGAYDDVNLYARI 175 (179)
T ss_pred ECCEEEEEEEEEEe
Confidence 33 388888775
No 19
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.86 E-value=4.3e-20 Score=114.27 Aligned_cols=123 Identities=19% Similarity=0.177 Sum_probs=91.7
Q ss_pred CCceeEecCCCCCcchhHHHHHHHHhHhhCCCcHHHhhhHHHHHhccCCceEEEE-ECCeEEEEEEEEecCCCeEEEEEE
Q 031671 3 SNGTVTELQRNSTNWTVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIQ-IHGQVVGHVMYAWPTSLSASITKL 81 (155)
Q Consensus 3 ~~~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~~~~~~~~i~~~ 81 (155)
+++.||+++++ |.+.+..+....................+ ...++++. .++++||++.+.....+.+.|..+
T Consensus 4 ~~i~iR~a~~~------D~~~i~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~va~~~~~~iiG~~~~~~~~~~~~~i~~l 76 (169)
T PRK07922 4 GAITVRRARTS------DVPAIKRLVDPYAQGRILLEKNLVTLYEA-VQEFWVAEHLDGEVVGCGALHVMWEDLAEIRTV 76 (169)
T ss_pred CCceeecCCHh------hHHHHHHHHHHHhhcCccccchHHHHHhh-cCcEEEEEecCCcEEEEEEEeecCCCceEEEEE
Confidence 56899999999 67777777654332211111112222222 34466777 789999999886555567889899
Q ss_pred EEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEE
Q 031671 82 AVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTL 137 (155)
Q Consensus 82 ~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~ 137 (155)
+|+|+|||+|+|++|++++++++++.|++.+.+.+. +++||+|+||+..+.
T Consensus 77 ~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~-----~~~fY~k~GF~~~~~ 127 (169)
T PRK07922 77 AVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF-----EVEFFARHGFVEIDG 127 (169)
T ss_pred EECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec-----cHHHHHHCCCEECcc
Confidence 999999999999999999999999999999887654 368999999998764
No 20
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.86 E-value=1.9e-19 Score=114.03 Aligned_cols=102 Identities=14% Similarity=0.226 Sum_probs=83.3
Q ss_pred eEEEEE--CCeEEEEEEEEecCC---CeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhC-CccEEEEEEecCCchhHhH
Q 031671 53 LLYIQI--HGQVVGHVMYAWPTS---LSASITKLAVKENYRGQGHGEALLEAAIKKCRTR-TVLCITLHVDPLRTPAVNL 126 (155)
Q Consensus 53 ~~~~~~--~~~~vG~~~~~~~~~---~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n~~a~~~ 126 (155)
.+++.. ++++||.+.+..... ..+++ .+.|+|+|||+|+|+.+++.+++++++. |++++.+.|.+.|.+|+++
T Consensus 77 ~~~i~~~~~~~~iG~i~l~~~~~~~~~~~ei-g~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l 155 (194)
T PRK10809 77 YFALLDPDEKEIIGVANFSNVVRGSFHACYL-GYSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDL 155 (194)
T ss_pred EEEEEECCCCeEEEEEEEEeecCCCeeeEEE-EEEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHH
Confidence 444443 679999999864321 34555 6889999999999999999999999985 9999999999999999999
Q ss_pred HHHcCeEEEEEEecccc-CC--CceeEeeecC
Q 031671 127 YKKFGFQVDTLIQGFYS-AD--RPAYERTFLK 155 (155)
Q Consensus 127 y~~~Gf~~~~~~~~~~~-~~--~~~~~m~~~~ 155 (155)
|+|+||+..+..+.++. ++ .|.++|.+++
T Consensus 156 ~ek~Gf~~~g~~~~~~~~~g~~~d~~~~~~~~ 187 (194)
T PRK10809 156 LARLGFEKEGYAKDYLLIDGQWRDHVLTALTT 187 (194)
T ss_pred HHHCCCcEEeeeccccccCCeEEEEEEeeeeh
Confidence 99999999998876654 33 3788887653
No 21
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.85 E-value=1e-19 Score=107.88 Aligned_cols=118 Identities=26% Similarity=0.421 Sum_probs=89.2
Q ss_pred eeEecCCCCCcchhHHHHHHHHhHhhCCCcHHHhh--hHHHHHhccCCceEEEEECCeEEEEEEEEec-----C--CCeE
Q 031671 6 TVTELQRNSTNWTVVVDEIVKMEKKIFPKHESLAR--SFDEELKKKNSGLLYIQIHGQVVGHVMYAWP-----T--SLSA 76 (155)
Q Consensus 6 ~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~-----~--~~~~ 76 (155)
+||+++++ |.+.+..+....|+....... ....... ....++++.++|++||.+.+... . ...+
T Consensus 1 ~iR~~~~~------d~~~i~~l~~~~F~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~ 73 (127)
T PF13527_consen 1 EIRPLTES------DFEQIIELFNEAFGDSESPPEIWEYFRNLY-GPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAA 73 (127)
T ss_dssp -EEEE-GG------GHHHHHHHHHHHTTT-CHHHHHHHHHHHHH-HTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEE
T ss_pred CceECCHH------HHHHHHHHHHHHCCCCCCchhhhhhhhccc-CcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEE
Confidence 48999999 899999999999987654431 1222222 24567888889999999988632 1 2368
Q ss_pred EEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEE
Q 031671 77 SITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVD 135 (155)
Q Consensus 77 ~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~ 135 (155)
.+..++|+|+|||+|+|+.|++++++.+++.|+..+.+.. ...+||+++||+.+
T Consensus 74 ~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~-----~~~~~Y~~~G~~~~ 127 (127)
T PF13527_consen 74 YIGDVAVDPEYRGRGLGRQLMRALLERARERGVPFIFLFP-----SSPPFYRRFGFEYA 127 (127)
T ss_dssp EEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE------SSHHHHHHTTEEEE
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec-----CChhhhhcCCCEEC
Confidence 8999999999999999999999999999999988777663 24699999999863
No 22
>PRK10314 putative acyltransferase; Provisional
Probab=99.85 E-value=1.7e-20 Score=114.17 Aligned_cols=131 Identities=15% Similarity=0.209 Sum_probs=96.1
Q ss_pred hhHHHHHHHHhHhhCCCcHHHhh-hHHHHHhccCCceEEEEECCeEEEEEEEEecCC--CeEEEEEEEEccCCCCCChHH
Q 031671 18 TVVVDEIVKMEKKIFPKHESLAR-SFDEELKKKNSGLLYIQIHGQVVGHVMYAWPTS--LSASITKLAVKENYRGQGHGE 94 (155)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~--~~~~i~~~~v~~~~r~~Gig~ 94 (155)
..++..+..+....|-.+...+. .+...-..+...++++..++++||++.+..... ..+.|+.++|+|+|||+|+|+
T Consensus 14 ~~~~~~~~~lR~~VF~~eq~~~~~e~D~~d~~~~~~h~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~ 93 (153)
T PRK10314 14 VSQLYALLQLRCAVFVVEQNCPYQDIDGDDLTGDNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQ 93 (153)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCCcEEEEEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHH
Confidence 33788888898888865433331 111110012345667777999999999875332 357899999999999999999
Q ss_pred HHHHHHHHHHHhC-CccEEEEEEecCCchhHhHHHHcCeEEEEEEeccccCCCceeEeee
Q 031671 95 ALLEAAIKKCRTR-TVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGFYSADRPAYERTF 153 (155)
Q Consensus 95 ~ll~~~~~~~~~~-g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~~~~~~m~~ 153 (155)
.|++++++.+++. +...+.+. .+..+.+||+|+||++.+.. |...|-+.+.|.+
T Consensus 94 ~Lm~~~~~~~~~~~~~~~i~L~---a~~~a~~fY~k~GF~~~g~~--f~~~Gi~h~~M~~ 148 (153)
T PRK10314 94 QLMSKTLESCTRHWPDKPVYLG---AQAHLQNFYQSFGFIPVTEV--YEEDGIPHIGMAR 148 (153)
T ss_pred HHHHHHHHHHHHHCCCCcEEEe---hHHHHHHHHHHCCCEECCCc--cccCCCCcHhhhh
Confidence 9999999999876 67777777 46678999999999998853 4455667777754
No 23
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=3.5e-19 Score=107.98 Aligned_cols=143 Identities=13% Similarity=0.127 Sum_probs=105.6
Q ss_pred ceeEecCCCCCcchhHHHHHHHHhHhhCCC----------cHHHhhhHHHHHhccCCceEEEEE-CCeEEEEEEEEecCC
Q 031671 5 GTVTELQRNSTNWTVVVDEIVKMEKKIFPK----------HESLARSFDEELKKKNSGLLYIQI-HGQVVGHVMYAWPTS 73 (155)
Q Consensus 5 ~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vG~~~~~~~~~ 73 (155)
+.||+.+.+ |++.+..+++..... .......+...........+++.. +|+++|++.+....+
T Consensus 2 ~~ir~~~~~------Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~ 75 (169)
T COG1247 2 MEIRPATAA------DLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRE 75 (169)
T ss_pred cEEecChHH------hHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEeeeccC
Confidence 678999999 888898888876422 111112222222222334556655 489999999874322
Q ss_pred ----CeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEecc-ccCCC--
Q 031671 74 ----LSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGF-YSADR-- 146 (155)
Q Consensus 74 ----~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~-~~~~~-- 146 (155)
.......++++|+.||+|+|++|++.+++.+...|+..+...+...|.+|+++++++||+..+..+.. ++.+.
T Consensus 76 r~ay~~tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~aSi~lh~~~GF~~~G~~~~vg~k~g~wl 155 (169)
T COG1247 76 RPAYRHTVELSIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLASIALHEKLGFEEVGTFPEVGDKFGRWL 155 (169)
T ss_pred ccccceEEEEEEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcHhHHHHHHCCCEEeccccccccccceEE
Confidence 23334489999999999999999999999999999999999999999999999999999999988754 22222
Q ss_pred ceeEeee
Q 031671 147 PAYERTF 153 (155)
Q Consensus 147 ~~~~m~~ 153 (155)
|.+.|.+
T Consensus 156 d~~~~~~ 162 (169)
T COG1247 156 DLVLMQL 162 (169)
T ss_pred eeeeeeh
Confidence 6666654
No 24
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.84 E-value=1.3e-19 Score=110.28 Aligned_cols=125 Identities=16% Similarity=0.239 Sum_probs=86.9
Q ss_pred CCceeEecCCCCCcchhHHH-HHHHHhHhhCCC---c-HHHhhhHHHHHhccCC-ceEEEEE--CCeEEEEEEEEec---
Q 031671 3 SNGTVTELQRNSTNWTVVVD-EIVKMEKKIFPK---H-ESLARSFDEELKKKNS-GLLYIQI--HGQVVGHVMYAWP--- 71 (155)
Q Consensus 3 ~~~~ir~~~~~d~~~~~~~~-~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~-~~~~~~~--~~~~vG~~~~~~~--- 71 (155)
..+.||+++++| .+ .+..+.....+. . ......+......... ..+++.. ++++||++.+...
T Consensus 5 ~~~~ir~~~~~D------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~ 78 (150)
T PLN02706 5 EKFKVRRLEISD------KSKGFLELLQQLTVVGDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERKF 78 (150)
T ss_pred CceEEeEhhhcc------cchHHHHHHHhccCCCCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEeec
Confidence 457899999994 33 234443332221 1 1222233222222222 2344444 5899999887421
Q ss_pred ---CCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEE
Q 031671 72 ---TSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 72 ---~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~ 136 (155)
....+++..++|+|+|||+|+|+.|++.++++|++.|++++.+.+.+.|. +||+|+||+..+
T Consensus 79 ~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~---~~y~k~GF~~~g 143 (150)
T PLN02706 79 IRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENK---AFYEKCGYVRKE 143 (150)
T ss_pred ccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccH---HHHHHCcCEEeh
Confidence 13456788899999999999999999999999999999999999998885 699999999876
No 25
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.84 E-value=2.9e-19 Score=127.88 Aligned_cols=130 Identities=23% Similarity=0.199 Sum_probs=100.5
Q ss_pred CceeEec-CCCCCcchhHHHHHHHHhHhhCCCcHHHhhhHHHHHhccCCceEEEEE--CCeEEEEEEEEe------cCCC
Q 031671 4 NGTVTEL-QRNSTNWTVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIQI--HGQVVGHVMYAW------PTSL 74 (155)
Q Consensus 4 ~~~ir~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vG~~~~~~------~~~~ 74 (155)
.+.||++ ++. |++.+..++......+... ..+..........++++.+ +|++||++.... ....
T Consensus 82 g~~IR~~~~~~------D~~~I~~L~~~~~~~p~~~-~~~~~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~ 154 (547)
T TIGR03103 82 GFTVRRLRGPA------DVDAINRLYAARGMVPVRV-DFVLDHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEH 154 (547)
T ss_pred CcEEEeCCChh------HHHHHHHHHHhcCCCCCCH-HHHHHHhcCCCceEEEEEECCCCeEEEEEEEEeccccccCCCC
Confidence 5789998 456 7888888887754322221 2223333344556677764 689999997531 1223
Q ss_pred eEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEec
Q 031671 75 SASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQG 140 (155)
Q Consensus 75 ~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~ 140 (155)
..++..++|+|+|||+|+|+.|++++++++++.|+..+.+.|...|..|++||+|+||+.......
T Consensus 155 ~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y~~ 220 (547)
T TIGR03103 155 GSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALYEKLGFRRIPVFAL 220 (547)
T ss_pred CeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCHHHHHHHHHCCCEEeeEEEE
Confidence 578999999999999999999999999999999999999999999999999999999998876543
No 26
>PRK07757 acetyltransferase; Provisional
Probab=99.84 E-value=2e-19 Score=109.78 Aligned_cols=121 Identities=26% Similarity=0.308 Sum_probs=88.9
Q ss_pred ceeEecCCCCCcchhHHHHHHHHhHhhCCCcHHHhhhHHHHHhccCCceEEEEECCeEEEEEEEEecCCCeEEEEEEEEc
Q 031671 5 GTVTELQRNSTNWTVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVK 84 (155)
Q Consensus 5 ~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~ 84 (155)
+.||+++++ |++.+.++.....+.......... ........++++..++++||++.+.....+.+++..++|+
T Consensus 2 ~~ir~~~~~------D~~~l~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~ 74 (152)
T PRK07757 2 MEIRKARLS------DVKAIHALINVYAKKGLMLPRSLD-ELYENIRDFYVAEEEGEIVGCCALHILWEDLAEIRSLAVS 74 (152)
T ss_pred ceEeeCCcc------cHHHHHHHHHHHHhcCCccCCCHH-HHHhccCcEEEEEECCEEEEEEEEEeccCCceEEEEEEEC
Confidence 689999999 666666665543321111111111 1112223456777799999999997666667889999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEE
Q 031671 85 ENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTL 137 (155)
Q Consensus 85 ~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~ 137 (155)
|+|||+|+|+.|++.+++.+.+.|+..+.+.+. +.+||+|+||++.+.
T Consensus 75 p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~-----~~~~Y~k~GF~~~~~ 122 (152)
T PRK07757 75 EDYRGQGIGRMLVEACLEEARELGVKRVFALTY-----QPEFFEKLGFREVDK 122 (152)
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC-----cHHHHHHCCCEEccc
Confidence 999999999999999999999999988866542 468999999999876
No 27
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.84 E-value=3.7e-19 Score=108.95 Aligned_cols=138 Identities=16% Similarity=0.166 Sum_probs=98.8
Q ss_pred eeEecCCCCCcchhHHHHHHHHhHhh----C--C---CcHHHhhhH-HHHHhccCCceEEEEECCeEEEEEEEEecC--C
Q 031671 6 TVTELQRNSTNWTVVVDEIVKMEKKI----F--P---KHESLARSF-DEELKKKNSGLLYIQIHGQVVGHVMYAWPT--S 73 (155)
Q Consensus 6 ~ir~~~~~d~~~~~~~~~~~~~~~~~----~--~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~--~ 73 (155)
.+||++++ |.+.+.++.... + + .+......+ .....+.....+++..+|++||++.+.... .
T Consensus 2 ~lr~~~~~------D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vG~~~~~~~~~~~ 75 (156)
T TIGR03585 2 NFTPLNSE------ELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVCQESRPIGVISFTDINLVH 75 (156)
T ss_pred CcccCCHH------HHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEEECCEEEEEEEEEecChhh
Confidence 47888888 666666553321 1 1 111222233 333333344567777799999999987543 3
Q ss_pred CeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhC-CccEEEEEEecCCchhHhHHHHcCeEEEEEEeccccC-CC--cee
Q 031671 74 LSASITKLAVKENYRGQGHGEALLEAAIKKCRTR-TVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGFYSA-DR--PAY 149 (155)
Q Consensus 74 ~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~-~~--~~~ 149 (155)
+.+.+ .+++.|.+| +|+|++++..+++++++. +++.+.+.|...|.+|++||+|+||+..+..+.+... |. |.+
T Consensus 76 ~~~~~-g~~~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~~~~~~~~g~~~d~~ 153 (156)
T TIGR03585 76 KSAFW-GIYANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGVFRQGIFKEGEYYDVL 153 (156)
T ss_pred CeEEE-EEEeChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCeEeeeehhheeECCeEEEEE
Confidence 45666 455999999 999999999999999964 9999999999999999999999999999988765443 32 555
Q ss_pred Ee
Q 031671 150 ER 151 (155)
Q Consensus 150 ~m 151 (155)
+|
T Consensus 154 ~~ 155 (156)
T TIGR03585 154 LM 155 (156)
T ss_pred Ee
Confidence 55
No 28
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=99.84 E-value=1.7e-20 Score=110.10 Aligned_cols=142 Identities=21% Similarity=0.258 Sum_probs=114.1
Q ss_pred ceeEecCCCCCcchhHHHHHHHHhHhhCCCcHHHhhhHHHHHhccCCceEEEEE-CCeEEEEEEEEec-----CCCeEEE
Q 031671 5 GTVTELQRNSTNWTVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIQI-HGQVVGHVMYAWP-----TSLSASI 78 (155)
Q Consensus 5 ~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vG~~~~~~~-----~~~~~~i 78 (155)
+.||.++++ |+-.+....-...|.+.. ...+.....+.+...+++.+ +|++|||+...-. ..+.++|
T Consensus 2 m~iR~ar~~------DL~~mQ~~Nl~~lpENyq-mkyylyh~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~~hGhI 74 (193)
T KOG3235|consen 2 MNIRRARPD------DLLEMQHCNLLNLPENYQ-MKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEPPHGHI 74 (193)
T ss_pred cccccCCHH------HHHHhhhcccccCcHHHh-HHHHHHhhcccccceEEEEcCCCcEEEEeeeehhhcccCCCCCCee
Confidence 567888777 444444444444454433 34555555666777888885 8999999988742 2448999
Q ss_pred EEEEEccCCCCCChHHHHHHHHHHHHHhC-CccEEEEEEecCCchhHhHHH-HcCeEEEEEEeccccCCCceeEeee
Q 031671 79 TKLAVKENYRGQGHGEALLEAAIKKCRTR-TVLCITLHVDPLRTPAVNLYK-KFGFQVDTLIQGFYSADRPAYERTF 153 (155)
Q Consensus 79 ~~~~v~~~~r~~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n~~a~~~y~-~~Gf~~~~~~~~~~~~~~~~~~m~~ 153 (155)
..++|...||+.|+|++|+..+.....+. +.+.+.+.|...|.+|+.+|+ .+||++.+....||.+|+|++.|.+
T Consensus 75 tSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve~kYYadGedAyaM~~ 151 (193)
T KOG3235|consen 75 TSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVVCEVEPKYYADGEDAYAMRK 151 (193)
T ss_pred EEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEEeecccccccccHHHHHHHH
Confidence 99999999999999999999988888776 889999999999999999998 9999999999999999999998875
No 29
>PHA00673 acetyltransferase domain containing protein
Probab=99.83 E-value=5.8e-19 Score=105.61 Aligned_cols=117 Identities=14% Similarity=0.079 Sum_probs=92.5
Q ss_pred HHHHHHHHhHhhC-C-------CcHHHhhhHHHHHhccCCceEEEEECCeEEEEEEEEec------CCCeEEEEEEEEcc
Q 031671 20 VVDEIVKMEKKIF-P-------KHESLARSFDEELKKKNSGLLYIQIHGQVVGHVMYAWP------TSLSASITKLAVKE 85 (155)
Q Consensus 20 ~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~------~~~~~~i~~~~v~~ 85 (155)
|++.+..+....- + .+......+.....+++..++++.++|++||++.+... ....+.|..++|+|
T Consensus 16 D~paI~~LLadd~l~~~r~d~~~~~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~ 95 (154)
T PHA00673 16 DAPTFASLCAEYAHESANADLAGRAPDHHAYAGMEAAGVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAA 95 (154)
T ss_pred hHHHHHHHHHhcccccccccccccchhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEECh
Confidence 7888888765421 1 11223344667777788888888889999999988642 23467899999999
Q ss_pred CCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEE
Q 031671 86 NYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTL 137 (155)
Q Consensus 86 ~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~ 137 (155)
++||+|||++|++++++++++.|+..+++...+ +...+.||.++|++.+.+
T Consensus 96 ~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p-~~~tv~fy~~~g~~~~~~ 146 (154)
T PHA00673 96 AHRPGGAGMALLRATEALARDLGATGLYVSGPT-EGRLVQLLPAAGYRETNR 146 (154)
T ss_pred hccCCCHHHHHHHHHHHHHHHCCCCEEEEecCC-CccchHHHHhCCchhhch
Confidence 999999999999999999999999999988553 556899999999998763
No 30
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.83 E-value=2e-19 Score=105.12 Aligned_cols=85 Identities=29% Similarity=0.514 Sum_probs=69.5
Q ss_pred hhHHHHHhccCCceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecC
Q 031671 40 RSFDEELKKKNSGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPL 119 (155)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~ 119 (155)
..+...+.+....++++..++++||++.+. +...|..++|+|+|||+|+|++|++.+++.++. |++.+.+. .
T Consensus 33 ~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~---~ 104 (117)
T PF13673_consen 33 EDLEEYLEEGSHTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVE---A 104 (117)
T ss_dssp HHHHHHHCTCCCEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEE---C
T ss_pred HHHHHHHHhcCCEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEE---e
Confidence 345555555556788899999999999996 234498999999999999999999999999977 88877776 8
Q ss_pred CchhHhHHHHcCe
Q 031671 120 RTPAVNLYKKFGF 132 (155)
Q Consensus 120 n~~a~~~y~~~Gf 132 (155)
|..+.+||+++||
T Consensus 105 ~~~a~~~y~~~GF 117 (117)
T PF13673_consen 105 NERARRFYRKLGF 117 (117)
T ss_dssp -HHHHHHHHHTT-
T ss_pred CHHHHHHHHhCCC
Confidence 9999999999998
No 31
>PRK10514 putative acetyltransferase; Provisional
Probab=99.83 E-value=9e-19 Score=106.05 Aligned_cols=132 Identities=20% Similarity=0.248 Sum_probs=88.2
Q ss_pred ceeEecCCCCCcchhHHHHHHHHhHhhC------CCcHHHhhhHHHHHh--ccCCceEEEE-ECCeEEEEEEEEecCCCe
Q 031671 5 GTVTELQRNSTNWTVVVDEIVKMEKKIF------PKHESLARSFDEELK--KKNSGLLYIQ-IHGQVVGHVMYAWPTSLS 75 (155)
Q Consensus 5 ~~ir~~~~~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~vG~~~~~~~~~~~ 75 (155)
+.||+++++ |.+.+..+....+ .... ....+...+. .+....+++. .++++||++.+..
T Consensus 2 ~~ir~~~~~------D~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~----- 69 (145)
T PRK10514 2 ISIRRSRHE------EGERLVAIWRRSVDATHDFLSAE-DRAEIEELVRSFLPEAPLWVAVDERDQPVGFMLLSG----- 69 (145)
T ss_pred ceeeecchh------hHHHHHHHHHHHHHHhCcccCch-hHHHHHHHHHHHhccCceEEEEecCCcEEEEEEEec-----
Confidence 679999999 5666666554321 1111 1111211111 1223344554 5889999998742
Q ss_pred EEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEeccccC-CCceeEeee
Q 031671 76 ASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGFYSA-DRPAYERTF 153 (155)
Q Consensus 76 ~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~-~~~~~~m~~ 153 (155)
..+..++|+|+|||+|+|++|++.+++.+ +.+.+.+...|.+|++||+|+||+..+.......+ .-+.+.|..
T Consensus 70 ~~~~~~~v~p~~rgkGig~~Ll~~~~~~~-----~~i~~~v~~~N~~a~~~yek~Gf~~~~~~~~~~~~~~~~~~~~~~ 143 (145)
T PRK10514 70 GHMEALFVDPDVRGCGVGRMLVEHALSLH-----PELTTDVNEQNEQAVGFYKKMGFKVTGRSEVDDQGRPYPLLHLAY 143 (145)
T ss_pred CcEeEEEECHHhccCCHHHHHHHHHHHhc-----cccEEEeecCCHHHHHHHHHCCCEEecccccCCCCCccceEEEEe
Confidence 34668999999999999999999999864 34678888899999999999999999876533222 336666553
No 32
>PRK10562 putative acetyltransferase; Provisional
Probab=99.81 E-value=3.5e-18 Score=103.46 Aligned_cols=130 Identities=18% Similarity=0.235 Sum_probs=90.7
Q ss_pred eEecCCCCCcchhHHHHHHHHhHhhC----CCc-HHHhhhHHH---HHhccCCceEEEEECCeEEEEEEEEecCCCeEEE
Q 031671 7 VTELQRNSTNWTVVVDEIVKMEKKIF----PKH-ESLARSFDE---ELKKKNSGLLYIQIHGQVVGHVMYAWPTSLSASI 78 (155)
Q Consensus 7 ir~~~~~d~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i 78 (155)
||+++.+ |++.+.++..... +.. ......... .........+++..++++||++.+... ..+
T Consensus 2 ir~~~~~------D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~iG~~~~~~~----~~i 71 (145)
T PRK10562 2 IREYQPS------DLPAILQLWLESTIWAHPFIKEQYWRESAPLVRDVYLPAAQTWVWEEDGKLLGFVSVLEG----RFV 71 (145)
T ss_pred cccccch------hhHHHHHHHHHhccccCCCCCHHHHHHhHHHhhhhhcCcccEEEEEECCEEEEEEEEeec----cEE
Confidence 7888888 6777777755432 111 111111111 111123445666778999999988532 357
Q ss_pred EEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEeccccC-CCceeEeee
Q 031671 79 TKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGFYSA-DRPAYERTF 153 (155)
Q Consensus 79 ~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~-~~~~~~m~~ 153 (155)
..++|+|+|||+|+|+.|++++++. +..+.+.+...|..|++||+|+||+..+. .++.+ +.++++|..
T Consensus 72 ~~~~v~~~~rg~G~g~~ll~~~~~~-----~~~~~~~v~~~N~~s~~~y~k~Gf~~~~~--~~~~~~~~~~~~~~~ 140 (145)
T PRK10562 72 GALFVAPKAVRRGIGKALMQHVQQR-----YPHLSLEVYQKNQRAVNFYHAQGFRIVDS--AWQEETQHPTWIMSW 140 (145)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHhh-----CCeEEEEEEcCChHHHHHHHHCCCEEccc--cccCCCCCEEEEEEe
Confidence 7899999999999999999998774 34678888889999999999999999885 34554 558888764
No 33
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.80 E-value=3.1e-18 Score=114.85 Aligned_cols=88 Identities=23% Similarity=0.334 Sum_probs=74.4
Q ss_pred CceEEEEE--CCeEEEEEEEEecC--CCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhH
Q 031671 51 SGLLYIQI--HGQVVGHVMYAWPT--SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNL 126 (155)
Q Consensus 51 ~~~~~~~~--~~~~vG~~~~~~~~--~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~ 126 (155)
..++++.. ++++||++.+.... ....++..+.|+|+|||+|+|+.|+..+++++++.|+..+.+.+...|.++++|
T Consensus 198 ~~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~ 277 (292)
T TIGR03448 198 AGLFLAFDDAPGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRT 277 (292)
T ss_pred CceEEEEECCCCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 34566666 68999998655322 235677778999999999999999999999999999999999999999999999
Q ss_pred HHHcCeEEEEEE
Q 031671 127 YKKFGFQVDTLI 138 (155)
Q Consensus 127 y~~~Gf~~~~~~ 138 (155)
|+|+||++.+..
T Consensus 278 y~k~GF~~~~~~ 289 (292)
T TIGR03448 278 YEKLGFTVAEVD 289 (292)
T ss_pred HHHcCCEEcccc
Confidence 999999987654
No 34
>PRK09831 putative acyltransferase; Provisional
Probab=99.80 E-value=3.2e-18 Score=103.85 Aligned_cols=91 Identities=23% Similarity=0.259 Sum_probs=70.5
Q ss_pred CceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHc
Q 031671 51 SGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKF 130 (155)
Q Consensus 51 ~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~ 130 (155)
..++++..+|++||++.+. ..++..++|+|+|||+|+|+.|++++++.+++ + .+. .|..+++||+|+
T Consensus 53 ~~~~v~~~~~~iiG~~~~~-----~~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l--~v~-~~~~a~~~Y~k~ 119 (147)
T PRK09831 53 SQVRVAVINAQPVGFITCI-----EHYIDMLFVDPEYTRRGVASALLKPLIKSESE-----L--TVD-ASITAKPFFERY 119 (147)
T ss_pred CceEEEEECCEEEEEEEeh-----hceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----e--Eee-cchhhHHHHHHC
Confidence 4567777899999999874 14677899999999999999999999998875 3 333 467899999999
Q ss_pred CeEEEEEEeccccC-CCceeEeeec
Q 031671 131 GFQVDTLIQGFYSA-DRPAYERTFL 154 (155)
Q Consensus 131 Gf~~~~~~~~~~~~-~~~~~~m~~~ 154 (155)
||+..+..+.-..+ ..+.+.|.++
T Consensus 120 Gf~~~g~~~~~~~g~~~~~~~m~~~ 144 (147)
T PRK09831 120 GFQTVKQQRVECRGEWFINFYMRYK 144 (147)
T ss_pred CCEEeeccceEECCEEEEeeEEEec
Confidence 99999986522221 2277777764
No 35
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.80 E-value=2.3e-18 Score=120.64 Aligned_cols=122 Identities=17% Similarity=0.242 Sum_probs=88.7
Q ss_pred ceeEecCCCCCcchhHHHHHHHHhHhhCCCcHHHhhhHHHHHhccCCceEEEEECCeEEEEEEEEec-CCCeEEEEEEEE
Q 031671 5 GTVTELQRNSTNWTVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIQIHGQVVGHVMYAWP-TSLSASITKLAV 83 (155)
Q Consensus 5 ~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~-~~~~~~i~~~~v 83 (155)
+.||+++.+ |++.+..+........... ....+.+......++++..++++||++.+... ....+++..++|
T Consensus 283 ~~IR~at~~------Dl~~I~~L~~~~~~~~~~~-~~~~~~l~~~~~~~~V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V 355 (429)
T TIGR01890 283 ESIRQATID------DIGGIAALIRPLEEQGILV-RRSREYLEREISEFSIIEHDGNIIGCAALYPYAEEDCGEMACLAV 355 (429)
T ss_pred hheEECCHH------HHHHHHHHHHHHHHcCCch-hhhHHHHHhhcCcEEEEEECCEEEEEEEEEecCCCCeEEEEEEEE
Confidence 368998888 7777777754322111100 11122222233446677779999999988754 345789999999
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEE
Q 031671 84 KENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTL 137 (155)
Q Consensus 84 ~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~ 137 (155)
+|+|||+|+|++|+++++++++++|++.+.+. .. .+.+||+++||+..+.
T Consensus 356 ~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~--~~--~a~~fY~k~GF~~~g~ 405 (429)
T TIGR01890 356 SPEYQDGGRGERLLAHIEDRARQMGISRLFVL--TT--RTGHWFRERGFQTASV 405 (429)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEe--ec--chHHHHHHCCCEECCh
Confidence 99999999999999999999999999887653 23 3679999999999976
No 36
>PHA01807 hypothetical protein
Probab=99.79 E-value=8.6e-18 Score=101.61 Aligned_cols=91 Identities=12% Similarity=0.169 Sum_probs=72.9
Q ss_pred hhHHHHHhccCCceEEEEECCeEEEEEEEEecCC-CeEE---EEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEE
Q 031671 40 RSFDEELKKKNSGLLYIQIHGQVVGHVMYAWPTS-LSAS---ITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLH 115 (155)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~-~~~~---i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~ 115 (155)
..+.....+.....+++..+|++||++.+..... +... +..++|+|+|||+|+|+.|++.+++++++.|+..+.+.
T Consensus 42 ~~~~~~~~~~~~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~ 121 (153)
T PHA01807 42 ERILDSTESNDRTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFS 121 (153)
T ss_pred HHHHHHhhCCCceEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3444434444555677777999999998864332 2233 34479999999999999999999999999999999999
Q ss_pred EecCCchhHhHHHHc
Q 031671 116 VDPLRTPAVNLYKKF 130 (155)
Q Consensus 116 ~~~~n~~a~~~y~~~ 130 (155)
+...|.+|++||++.
T Consensus 122 v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 122 HREGEGRYTIHYRRV 136 (153)
T ss_pred ecCCcHHHHHHHHhc
Confidence 999999999999975
No 37
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.79 E-value=5.4e-18 Score=92.29 Aligned_cols=77 Identities=31% Similarity=0.534 Sum_probs=64.6
Q ss_pred CceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHc
Q 031671 51 SGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKF 130 (155)
Q Consensus 51 ~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~ 130 (155)
..++++.+++++||++.+. ..++...|..++|+|+|||+|+|+.|++.+.+.+... .+.+.+ +..+.+||+++
T Consensus 3 ~~~~~~~~~~~ivG~~~~~-~~~~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~~---~i~l~~---~~~~~~fY~~~ 75 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLW-PNEDFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKSK---KIFLFT---NPAAIKFYEKL 75 (79)
T ss_dssp EEEEEEEETTEEEEEEEEE-ETTTEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTCS---EEEEEE---EHHHHHHHHHT
T ss_pred cEEEEEEECCEEEEEEEEE-EcCCEEEEEEEEECHHHcCCCHHHHHHHHHHHHcCCC---cEEEEE---cHHHHHHHHHC
Confidence 4567888899999999996 4455899999999999999999999999998888543 456654 56899999999
Q ss_pred CeEE
Q 031671 131 GFQV 134 (155)
Q Consensus 131 Gf~~ 134 (155)
||++
T Consensus 76 GF~~ 79 (79)
T PF13508_consen 76 GFEE 79 (79)
T ss_dssp TEEE
T ss_pred cCCC
Confidence 9985
No 38
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.79 E-value=8e-18 Score=96.41 Aligned_cols=131 Identities=18% Similarity=0.276 Sum_probs=100.8
Q ss_pred CCCceeEecCCCCCcchhHHHHHHHHhHhhCCCcHHHhhhHHHHHhccCCce-EEEEE--CCeEEEEEEEEe------cC
Q 031671 2 GSNGTVTELQRNSTNWTVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGL-LYIQI--HGQVVGHVMYAW------PT 72 (155)
Q Consensus 2 ~~~~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~vG~~~~~~------~~ 72 (155)
+..+.+||+..+|-. ..-++.+-++...-.-.++.+...+...-...++.. .++++ .+++||.+.+.. .-
T Consensus 4 P~~~~lR~L~~~D~~-kGf~elL~qLT~vG~vt~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh~~ 82 (150)
T KOG3396|consen 4 PDGFKLRPLEEDDYG-KGFIELLKQLTSVGVVTREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFIHGC 82 (150)
T ss_pred CCceEEeeccccccc-chHHHHHHHHhhccccCHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhhcc
Confidence 345899999988421 113445555555555566777777777666655333 44444 688999998873 23
Q ss_pred CCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEE
Q 031671 73 SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 73 ~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~ 136 (155)
+..++|..+.|+++|||+++|+.|+..+...++..|+-++.+.|.+.| +.||+|+||...+
T Consensus 83 g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~n---v~FYeKcG~s~~~ 143 (150)
T KOG3396|consen 83 GSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKN---VKFYEKCGYSNAG 143 (150)
T ss_pred cccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhh---hhHHHHcCccccc
Confidence 457899999999999999999999999999999999999999988877 5999999998765
No 39
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.79 E-value=3.8e-18 Score=123.94 Aligned_cols=123 Identities=24% Similarity=0.257 Sum_probs=91.2
Q ss_pred CceeEecCCCCCcchhHHHHHHHHhHhhCCCcHHHhhhHHHHHhccCCceEEEEECCeEEEEEEEEecCCCeEEEEEEEE
Q 031671 4 NGTVTELQRNSTNWTVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIQIHGQVVGHVMYAWPTSLSASITKLAV 83 (155)
Q Consensus 4 ~~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v 83 (155)
.++||+++++ |++.+..+....+......... ...+......++++..+|++||++.+...+...++|..++|
T Consensus 463 gm~IR~a~~~------D~~~I~~L~~~~~~~~~~~~~~-~~~l~~~~~~~~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V 535 (614)
T PRK12308 463 GVKVRPARLT------DIDAIEGMVAYWAGLGENLPRS-RNELVRDIGSFAVAEHHGEVTGCASLYIYDSGLAEIRSLGV 535 (614)
T ss_pred CCEEEECCHH------HHHHHHHHHHHHHhhhcccccC-HHHHhcccCcEEEEEECCEEEEEEEEEEcCCCeEEEEEEEE
Confidence 4789999999 6666666654432111111111 11122233456777789999999998765556788999999
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEE
Q 031671 84 KENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 84 ~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~ 138 (155)
+|+|||+|+|+.|++++++++++.|++.+.+.+ .+.+||+|+||+..+..
T Consensus 536 ~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~-----~a~~FYek~GF~~~~~~ 585 (614)
T PRK12308 536 EAGWQVQGQGSALVQYLVEKARQMAIKKVFVLT-----RVPEFFMKQGFSPTSKS 585 (614)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEee-----CcHHHHHHCCCEECCcc
Confidence 999999999999999999999999999888753 24699999999988754
No 40
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.79 E-value=5.4e-18 Score=114.69 Aligned_cols=124 Identities=11% Similarity=0.211 Sum_probs=95.5
Q ss_pred CCceeEecCCCCCcchhHHHHHHHHhHhh--CCC--cHHHhhhHHHHHhccCCceEEEEE-----CCeEEEEEEEEecCC
Q 031671 3 SNGTVTELQRNSTNWTVVVDEIVKMEKKI--FPK--HESLARSFDEELKKKNSGLLYIQI-----HGQVVGHVMYAWPTS 73 (155)
Q Consensus 3 ~~~~ir~~~~~d~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~vG~~~~~~~~~ 73 (155)
+.++||++++. |++.+.++.... |.. .......+...+.++ ..+++.. ++.+||++.+. ...
T Consensus 185 m~~~Ir~a~~~------Dl~ri~~L~~~tnqfn~~~~~~s~~~i~~~l~~~--~~~~~~~~d~~gd~givG~~~~~-~~~ 255 (320)
T TIGR01686 185 LSLNISKNDEQ------NVQRVEELLGRTNQFNATYTRLNQEDVAQHMQKE--EIVTVSMSDRFGDSGIIGIFVFE-KKE 255 (320)
T ss_pred CEEEEEECChh------hhHHHHHHHHhHHhhhccCccCCHHHHHHHhcCC--CEEEEEEEecCCCCceEEEEEEE-ecC
Confidence 45789999999 788888887665 321 111223444444443 3443332 57899999886 445
Q ss_pred CeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEe--cCCchhHhHHHHcCeEEE
Q 031671 74 LSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVD--PLRTPAVNLYKKFGFQVD 135 (155)
Q Consensus 74 ~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~--~~n~~a~~~y~~~Gf~~~ 135 (155)
+.++|..++|+|++||+|+|+.|++++++.+++.|++.+.+.+. ..|.+|+.||+++||+..
T Consensus 256 ~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 256 GNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred CcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 67899999999999999999999999999999999999999875 479999999999999853
No 41
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.79 E-value=4.8e-18 Score=100.40 Aligned_cols=122 Identities=19% Similarity=0.275 Sum_probs=95.5
Q ss_pred ceeEecCCCCCcchhHHHHHHHHhHhhCCCcHHHhhhHHHHHhccCCceEEEEECCeEEEEEEEE-ecCCCeEEEEEEEE
Q 031671 5 GTVTELQRNSTNWTVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIQIHGQVVGHVMYA-WPTSLSASITKLAV 83 (155)
Q Consensus 5 ~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~-~~~~~~~~i~~~~v 83 (155)
++||.++.+ |+..+.++......+.-- .....+.+...-..++++..+|.+||++.+. ....+.+++..++|
T Consensus 1 ~~iR~A~~~------Di~~I~~Li~~~~~~gil-~~rs~~~le~~i~dF~i~E~~g~viGC~aL~~~~~~~~gE~~~laV 73 (153)
T COG1246 1 EQIRKARIS------DIPAILELIRPLELQGIL-LRRSREQLEEEIDDFTIIERDGKVIGCAALHPVLEEDLGELRSLAV 73 (153)
T ss_pred Cceeecccc------chHHHHHHHHHHhhcccc-chhhHHHHHHHHhhheeeeeCCcEEEEEeecccCccCeeeEEEEEE
Confidence 358888888 677777776665443211 1122222223334578888899999999998 47788999999999
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEE
Q 031671 84 KENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTL 137 (155)
Q Consensus 84 ~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~ 137 (155)
+|++|++|+|..|++.++..|++.|++.+++-+. .+..||.++||+....
T Consensus 74 ~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt----~~~~~F~~~GF~~vd~ 123 (153)
T COG1246 74 HPDYRGSGRGERLLERLLADARELGIKELFVLTT----RSPEFFAERGFTRVDK 123 (153)
T ss_pred CHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec----ccHHHHHHcCCeECcc
Confidence 9999999999999999999999999999988743 4779999999998765
No 42
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.78 E-value=4.2e-18 Score=119.78 Aligned_cols=122 Identities=19% Similarity=0.250 Sum_probs=88.4
Q ss_pred ceeEecCCCCCcchhHHHHHHHHhHhhCCCcHHHhhhHHHHHhccCCceEEEEECCeEEEEEEEEec-CCCeEEEEEEEE
Q 031671 5 GTVTELQRNSTNWTVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIQIHGQVVGHVMYAWP-TSLSASITKLAV 83 (155)
Q Consensus 5 ~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~-~~~~~~i~~~~v 83 (155)
+.||+++++ |++.+.++.......... .....+.+......++++..++++||++.+... ....++|..++|
T Consensus 295 ~~IR~at~~------D~~~I~~L~~~~~~~~~~-~~~~~~~l~~~~~~~~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V 367 (441)
T PRK05279 295 EQLRRATID------DVGGILELIRPLEEQGIL-VRRSREQLEREIDKFTVIERDGLIIGCAALYPFPEEKMGEMACLAV 367 (441)
T ss_pred HHeEeCCHH------HHHHHHHHHHHHHHcCCc-cccCHHHHhcccCcEEEEEECCEEEEEEEEEEcCCCCeEEEEEEEE
Confidence 578898888 677776665421110000 001112222233456777789999999987643 345789999999
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEE
Q 031671 84 KENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTL 137 (155)
Q Consensus 84 ~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~ 137 (155)
+|+|||+|+|++|++++++++++.|+..+.+. +..+++||+++||+..+.
T Consensus 368 ~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~----~~~a~~fY~k~GF~~~g~ 417 (441)
T PRK05279 368 HPDYRGSGRGERLLKRIEQRARQLGLKRLFVL----TTRTAHWFLERGFVPVDV 417 (441)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEe----cchHHHHHHHCcCEECCh
Confidence 99999999999999999999999999888664 346899999999999886
No 43
>PLN02825 amino-acid N-acetyltransferase
Probab=99.78 E-value=7.2e-18 Score=118.85 Aligned_cols=121 Identities=18% Similarity=0.236 Sum_probs=90.9
Q ss_pred eeEecCCCCCcchhHHHHHHHHhHhhCCCcHHHhhhHHHHHhccCCceEEEEECCeEEEEEEEEe-cCCCeEEEEEEEEc
Q 031671 6 TVTELQRNSTNWTVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIQIHGQVVGHVMYAW-PTSLSASITKLAVK 84 (155)
Q Consensus 6 ~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~-~~~~~~~i~~~~v~ 84 (155)
.||+++.+ |+..+..+........... ....+.+......++++..||++||++.+.. .....++|..++|+
T Consensus 369 ~IR~At~e------Di~~I~~Li~~lee~g~lv-~rs~e~le~ei~~f~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~ 441 (515)
T PLN02825 369 GTRMARVE------DLAGIRQIIRPLEESGILV-RRTDEELLRALDSFVVVEREGSIIACAALFPFFEEKCGEVAAIAVS 441 (515)
T ss_pred hheeCCHH------HHHHHHHHHHHHHHcCCCc-CCCHHHHHhcCCcEEEEEECCEEEEEEEEEeecCCCcEEEEEEEEC
Confidence 58888888 7777777765532211100 0111222222345777888999999998764 34567899999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEE
Q 031671 85 ENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTL 137 (155)
Q Consensus 85 ~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~ 137 (155)
|+|||+|+|++|++++++.|++.|++.+.+.+ +.+.+||+++||+..+.
T Consensus 442 P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt----t~a~~fY~k~GF~~~~~ 490 (515)
T PLN02825 442 PECRGQGQGDKLLDYIEKKAASLGLEKLFLLT----TRTADWFVRRGFSECSI 490 (515)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe----CcHHHHHHHCCCEEeCh
Confidence 99999999999999999999999999998875 34789999999998864
No 44
>PRK01346 hypothetical protein; Provisional
Probab=99.77 E-value=2.9e-17 Score=114.90 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=96.8
Q ss_pred CCCCceeEecCCCCCcchhHHHHHHHHhHhhCCCcH--HHhhhHHHHHhccCCceEEEEECCeEEEEEEEEecC------
Q 031671 1 MGSNGTVTELQRNSTNWTVVVDEIVKMEKKIFPKHE--SLARSFDEELKKKNSGLLYIQIHGQVVGHVMYAWPT------ 72 (155)
Q Consensus 1 M~~~~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~------ 72 (155)
|.+.++||+++.+ |++.+.++....|.... .....+.... .....+++.+++++||++.+....
T Consensus 3 ~~~~~~iR~~~~~------D~~~i~~L~~~~f~~~~~~~~~~~~~~~~--~~~~~~va~~~~~lvg~~~~~~~~~~~~~~ 74 (411)
T PRK01346 3 RDMAITIRTATEE------DWPAWFRAAATGFGDSPSDEELEAWRALV--EPDRTLGAFDGDEVVGTAGAFDLRLTVPGG 74 (411)
T ss_pred CCCCceeecCCHH------HHHHHHHHHHHHcCCCCChHHHHHHHHhc--CcCCeEEEEECCEEEEEEEEeccccccCCC
Confidence 5567899999988 88888888888886532 1222222222 234467777899999999875321
Q ss_pred --CCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEecc
Q 031671 73 --SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGF 141 (155)
Q Consensus 73 --~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~ 141 (155)
.+..+|..++|+|+|||+|+|++|++++++.+++.|...+.+.+.. .+||+|+||+.......+
T Consensus 75 ~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~-----~~~Y~r~Gf~~~~~~~~~ 140 (411)
T PRK01346 75 AVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE-----GGIYGRFGYGPATYSQSL 140 (411)
T ss_pred CccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc-----hhhHhhCCCeeccceEEE
Confidence 2468899999999999999999999999999999998877776432 379999999988755433
No 45
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.75 E-value=2.8e-16 Score=95.62 Aligned_cols=125 Identities=22% Similarity=0.314 Sum_probs=98.0
Q ss_pred CCceeEecCCCCCcchhHHHHHHHHhHhhCCCc--HHHhhhHHHHHhccCCceEEEEECCeEEEEEEEEe---c--CCCe
Q 031671 3 SNGTVTELQRNSTNWTVVVDEIVKMEKKIFPKH--ESLARSFDEELKKKNSGLLYIQIHGQVVGHVMYAW---P--TSLS 75 (155)
Q Consensus 3 ~~~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~---~--~~~~ 75 (155)
+++.||..++. |+..+.++....|... ....+.+.+...-.....+++.++|++||.+.+.. . ....
T Consensus 2 ~~~~ir~e~~~------d~~~i~~~~~~aF~~~~e~~~v~~lR~~~~~~~~LslVA~d~g~vvG~Il~s~v~~~g~~~~~ 75 (171)
T COG3153 2 MMMLIRTETPA------DIPAIEALTREAFGPGREAKLVDKLREGGRPDLTLSLVAEDDGEVVGHILFSPVTVGGEELGW 75 (171)
T ss_pred CccEEEecChh------hHHHHHHHHHHHhhcchHHHHHHHHHhcCCcccceeEEEeeCCEEEEEEEEeEEEecCcccce
Confidence 45789999999 8999999999999832 22333333333223456678888999999999874 2 2346
Q ss_pred EEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEe
Q 031671 76 ASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 76 ~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 139 (155)
..+..+.|+|+|||||||++|++..++.++..|...+.+.-++ .+|.+.||+......
T Consensus 76 ~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGdp------~YY~rfGF~~~~~~~ 133 (171)
T COG3153 76 LGLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGDP------TYYSRFGFEPAAGAK 133 (171)
T ss_pred EEEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecCc------ccccccCcEEccccc
Confidence 6788899999999999999999999999999999988776443 799999999987554
No 46
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.74 E-value=6.5e-17 Score=108.46 Aligned_cols=87 Identities=17% Similarity=0.157 Sum_probs=71.8
Q ss_pred CceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHc
Q 031671 51 SGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKF 130 (155)
Q Consensus 51 ~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~ 130 (155)
...+++..++++||++.+........++..++|+|+|||+|+|+.|++++++.+. ..+.+.+...|.++++||+++
T Consensus 46 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~----~~~~~~~~~~n~~a~~fy~~~ 121 (292)
T TIGR03448 46 TRHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG----GRLRVWAHGDLPAARALASRL 121 (292)
T ss_pred ceEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc----CceEEEEcCCCHHHHHHHHHC
Confidence 3466777789999999987544445678899999999999999999999999865 346777888899999999999
Q ss_pred CeEEEEEEecc
Q 031671 131 GFQVDTLIQGF 141 (155)
Q Consensus 131 Gf~~~~~~~~~ 141 (155)
||+.......+
T Consensus 122 Gf~~~~~~~~~ 132 (292)
T TIGR03448 122 GLVPTRELLQM 132 (292)
T ss_pred CCEEccEEEEE
Confidence 99988754443
No 47
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=99.73 E-value=3.9e-17 Score=100.37 Aligned_cols=133 Identities=23% Similarity=0.324 Sum_probs=109.1
Q ss_pred ceeEecCCCCCcchhHHHHHHHHhHhhCCCcHHHhhhHHHHHhccCCceEEEEECCeEEEEEEEEecCCC----------
Q 031671 5 GTVTELQRNSTNWTVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIQIHGQVVGHVMYAWPTSL---------- 74 (155)
Q Consensus 5 ~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~---------- 74 (155)
+.++++++. ++..+..+....||...... +.....+.....-++..++..||...+......
T Consensus 17 ~~l~~it~~------nl~~~~~l~~~~fP~~y~~k--fy~~~~~~~~~~~~A~~~~~~v~a~~~k~~~~~~~~~r~~~~~ 88 (187)
T KOG3138|consen 17 IELRLITPN------NLKQLKQLNEDIFPISYVDK--FYPDVLSNGDLTQLAYYNEIAVGAVACKLIKFVQNAKRLFGNR 88 (187)
T ss_pred eeeccCCcc------hHHHHHHHhccccCcchHHH--HHHHHHhcCCHHHhhhhccccccceeeeehhhhhhhhhhhccc
Confidence 778889999 89999999999998765432 445444444545555557777887777632111
Q ss_pred eEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCC-ccEEEEEEecCCchhHhHHHHcCeEEEEEEeccccCC
Q 031671 75 SASITKLAVKENYRGQGHGEALLEAAIKKCRTRT-VLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGFYSAD 145 (155)
Q Consensus 75 ~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g-~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~ 145 (155)
..+|..+.|.|.||.+|||+.|++.+.+.+.+.. ++.+.+.+...|..++.||++.||+.....+.||...
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~y~~~ 160 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNYYSIL 160 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeeccccccccc
Confidence 3889999999999999999999999999999987 8899999999999999999999999999999998864
No 48
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.73 E-value=3.9e-16 Score=94.08 Aligned_cols=122 Identities=18% Similarity=0.197 Sum_probs=85.9
Q ss_pred ceeEecCCCCCcchhHHHHHHHHhHh----hC---CCc----HHHhhhHHHHHh---ccCCceEEEEE--CCeEEEEEEE
Q 031671 5 GTVTELQRNSTNWTVVVDEIVKMEKK----IF---PKH----ESLARSFDEELK---KKNSGLLYIQI--HGQVVGHVMY 68 (155)
Q Consensus 5 ~~ir~~~~~d~~~~~~~~~~~~~~~~----~~---~~~----~~~~~~~~~~~~---~~~~~~~~~~~--~~~~vG~~~~ 68 (155)
++||+++++ |++.+.++... .+ ... ......+..... ......+++.. ++++||++.+
T Consensus 2 l~lr~~~~~------D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~ 75 (142)
T PF13302_consen 2 LTLRPLTPE------DADAIYEWRSDPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGL 75 (142)
T ss_dssp EEEEE-HGG------GHHHHHHHHTTTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEcCCHH------HHHHHHHHhcCHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeee
Confidence 689999999 67777666531 11 111 122223321111 11234455555 4579999999
Q ss_pred Ee--cCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHH-hCCccEEEEEEecCCchhHhHHHHcCeE
Q 031671 69 AW--PTSLSASITKLAVKENYRGQGHGEALLEAAIKKCR-TRTVLCITLHVDPLRTPAVNLYKKFGFQ 133 (155)
Q Consensus 69 ~~--~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~-~~g~~~~~~~~~~~n~~a~~~y~~~Gf~ 133 (155)
.. ...+.+++ ++.+.|+|||+|+|+.++..++++++ +.|+..+.+.+.+.|.+|+++++|+||+
T Consensus 76 ~~~~~~~~~~ei-g~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 76 YNIDKNNNWAEI-GYWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp EEEETTTTEEEE-EEEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred eecccCCCcccc-ccchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 53 24678888 58899999999999999999999996 5599999999999999999999999996
No 49
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=99.71 E-value=5.7e-17 Score=95.25 Aligned_cols=105 Identities=22% Similarity=0.376 Sum_probs=88.6
Q ss_pred cCCceEEEEE-CCeEEEEEEEEecC---CCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhH
Q 031671 49 KNSGLLYIQI-HGQVVGHVMYAWPT---SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAV 124 (155)
Q Consensus 49 ~~~~~~~~~~-~~~~vG~~~~~~~~---~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~ 124 (155)
.+..+.++.. ++++-|++.-..+. ...+++..+.|.|+||+.|+|+.|++.+++-....+.--+.+.|...|+-|+
T Consensus 39 ~pe~~~~a~~p~~~imgyimgk~Eg~~~~wh~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI 118 (173)
T KOG3234|consen 39 WPEDFIVAEAPTGEIMGYIMGKVEGKDTEWHGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAI 118 (173)
T ss_pred ChHHhEeccCCCCceEEEEeeeccccCcceeeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHH
Confidence 3444555554 78899999886433 3468899999999999999999999999999988877788999999999999
Q ss_pred hHHHHcCeEEEEEEecccc--CCCceeEeee
Q 031671 125 NLYKKFGFQVDTLIQGFYS--ADRPAYERTF 153 (155)
Q Consensus 125 ~~y~~~Gf~~~~~~~~~~~--~~~~~~~m~~ 153 (155)
.+|+++||....+...||. +++|++-|+|
T Consensus 119 ~mYkkLGY~~YR~Vi~YY~~g~deda~dMRK 149 (173)
T KOG3234|consen 119 DMYKKLGYSVYRTVIEYYSVGPDEDAYDMRK 149 (173)
T ss_pred HHHHhcCceEEEeeeeeeccCCCcchHhhhh
Confidence 9999999999999999998 4568887765
No 50
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=99.70 E-value=1e-15 Score=84.18 Aligned_cols=73 Identities=23% Similarity=0.290 Sum_probs=58.6
Q ss_pred eEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEE
Q 031671 61 QVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 61 ~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~ 138 (155)
++++++... + .+.|..++|+|+|||+|+|+.++..+.+.+.+.|.. ..+.+..+|.+|+++|+|+||+.....
T Consensus 11 ~l~~~~~~~---~-~g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~-~~l~v~~~N~~s~~ly~klGf~~~~~~ 83 (86)
T PF08445_consen 11 ALVAWIIRS---D-DGEIGGVYTLPEHRRRGLGSALVAALARELLERGKT-PFLYVDADNEASIRLYEKLGFREIEEE 83 (86)
T ss_dssp EEEEEEEES---C-TCCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSE-EEEEEETT-HHHHHHHHHCT-EEEEEE
T ss_pred ceeeEeeeC---C-CcEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHcCCEEEEEE
Confidence 455554432 2 278999999999999999999999999999998875 568899999999999999999998644
No 51
>PRK13688 hypothetical protein; Provisional
Probab=99.68 E-value=6.7e-16 Score=93.91 Aligned_cols=81 Identities=21% Similarity=0.206 Sum_probs=61.4
Q ss_pred CCceEEEEECCeEEEEEEEEec----------CCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecC
Q 031671 50 NSGLLYIQIHGQVVGHVMYAWP----------TSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPL 119 (155)
Q Consensus 50 ~~~~~~~~~~~~~vG~~~~~~~----------~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~ 119 (155)
...++++.+++++||++.+... ....++|..++|+|+|||+|+|++|++.+. +.++. + .+...
T Consensus 44 ~~~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~----~~~~~-~--~~~~~ 116 (156)
T PRK13688 44 ESPFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAK----SFQLP-I--KTIAR 116 (156)
T ss_pred CCCEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHH----HhCCe-E--EEEec
Confidence 4556777789999999876432 235678999999999999999999998654 33433 2 33334
Q ss_pred CchhHhHHHHcCeEEEEEE
Q 031671 120 RTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 120 n~~a~~~y~~~Gf~~~~~~ 138 (155)
| .+.+||+|+||+..+..
T Consensus 117 ~-~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 117 N-KSKDFWLKLGFTPVEYK 134 (156)
T ss_pred c-chHHHHHhCCCEEeEEe
Confidence 4 58899999999999876
No 52
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=99.66 E-value=8.5e-16 Score=93.19 Aligned_cols=96 Identities=24% Similarity=0.378 Sum_probs=80.9
Q ss_pred HHHhccCCceEEEEECC-eEEEEEEEEec---CCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecC
Q 031671 44 EELKKKNSGLLYIQIHG-QVVGHVMYAWP---TSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPL 119 (155)
Q Consensus 44 ~~~~~~~~~~~~~~~~~-~~vG~~~~~~~---~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~ 119 (155)
..+.+....++++..++ ++|||..+... ..+..++..+-|.++|||+|||+.|++.+...+.....++|.++|...
T Consensus 85 ~El~~~~~~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~ 164 (202)
T KOG2488|consen 85 KELRNRKLRYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSE 164 (202)
T ss_pred HHHhhccceEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecc
Confidence 33444455667777655 89999999863 234788999999999999999999999999999999889999999999
Q ss_pred CchhHhHHHHcCeEEEEEEe
Q 031671 120 RTPAVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 120 n~~a~~~y~~~Gf~~~~~~~ 139 (155)
|.+|+.||+++||.+....+
T Consensus 165 N~~al~Fy~~~gf~~~~~sp 184 (202)
T KOG2488|consen 165 NIRALGFYHRLGFVVDEESP 184 (202)
T ss_pred cchhHHHHHHcCcccCCCCC
Confidence 99999999999999876443
No 53
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.66 E-value=1.4e-15 Score=101.13 Aligned_cols=77 Identities=17% Similarity=0.295 Sum_probs=66.3
Q ss_pred ceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcC
Q 031671 52 GLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFG 131 (155)
Q Consensus 52 ~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~G 131 (155)
.+++..+++++||++.+.. ..|..++|+|+|||+|+|+.|++++++++++.|+..+.+.+... +.+||+|+|
T Consensus 7 ~~~v~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~---~~~fYek~G 78 (297)
T cd02169 7 TVGIFDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPK---NAKFFRGLG 78 (297)
T ss_pred EEEEEEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEccc---HHHHHHHCC
Confidence 3445556799999998852 25889999999999999999999999999999999999986543 479999999
Q ss_pred eEEEE
Q 031671 132 FQVDT 136 (155)
Q Consensus 132 f~~~~ 136 (155)
|+..+
T Consensus 79 F~~~~ 83 (297)
T cd02169 79 FKELA 83 (297)
T ss_pred CEEec
Confidence 99888
No 54
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=99.64 E-value=6.8e-15 Score=94.02 Aligned_cols=91 Identities=21% Similarity=0.282 Sum_probs=79.2
Q ss_pred cCCceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHH
Q 031671 49 KNSGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYK 128 (155)
Q Consensus 49 ~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~ 128 (155)
.....++...+|++|+.+......+..+.|..++++|+|||+|+|+.|+..+.+.....|.. .++.+...|..|.+.|+
T Consensus 175 g~~~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~-~~L~~~~~N~~A~~iY~ 253 (268)
T COG3393 175 GRSRTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKI-PCLFVNSDNPVARRIYQ 253 (268)
T ss_pred hceeEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCe-eEEEEecCCHHHHHHHH
Confidence 34555666667799999999878888999999999999999999999999999999998864 55777789999999999
Q ss_pred HcCeEEEEEEec
Q 031671 129 KFGFQVDTLIQG 140 (155)
Q Consensus 129 ~~Gf~~~~~~~~ 140 (155)
|.||+..++...
T Consensus 254 riGF~~~g~~~~ 265 (268)
T COG3393 254 RIGFREIGEFRE 265 (268)
T ss_pred HhCCeecceEEE
Confidence 999999997653
No 55
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=5.7e-14 Score=88.13 Aligned_cols=94 Identities=20% Similarity=0.332 Sum_probs=77.4
Q ss_pred CeEEEEEEEEecC----CCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhC-CccEEEEEEecCCchhHhHHHHcCeEE
Q 031671 60 GQVVGHVMYAWPT----SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTR-TVLCITLHVDPLRTPAVNLYKKFGFQV 134 (155)
Q Consensus 60 ~~~vG~~~~~~~~----~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n~~a~~~y~~~Gf~~ 134 (155)
+++||.+.+.... .+.+++ .+.+.|+|+|+|+|+.++..++++++.. +++++.+.|.+.|.+|+++++|+||+.
T Consensus 77 ~~~iG~~~~~~~~~~~~~~~~~i-g~~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~~ 155 (187)
T COG1670 77 GELIGVIGLSDIDRAANGDLAEI-GYWLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRL 155 (187)
T ss_pred CeEEEEEEEEEeccccccceEEE-EEEEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCChh
Confidence 4899999998533 445666 6677999999999999999999999985 999999999999999999999999999
Q ss_pred EEEEecc-ccCC--CceeEeeec
Q 031671 135 DTLIQGF-YSAD--RPAYERTFL 154 (155)
Q Consensus 135 ~~~~~~~-~~~~--~~~~~m~~~ 154 (155)
.+..... +..+ .+.+.+.++
T Consensus 156 eg~~~~~~~~~g~~~d~~~~~~~ 178 (187)
T COG1670 156 EGELRQHEFIKGRWRDTVLYSLL 178 (187)
T ss_pred hhhhhhceeeCCeeeeEEEEEEe
Confidence 9976643 2222 366666554
No 56
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=99.58 E-value=5.3e-15 Score=86.06 Aligned_cols=128 Identities=19% Similarity=0.235 Sum_probs=89.2
Q ss_pred HHHHHHHHhHhhCCCcHHHhhhHHHHHh-ccCCceEEEEE-CCeEEEEEEEEecCCC--eEEEEEEEEccCCCCCChHHH
Q 031671 20 VVDEIVKMEKKIFPKHESLARSFDEELK-KKNSGLLYIQI-HGQVVGHVMYAWPTSL--SASITKLAVKENYRGQGHGEA 95 (155)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~vG~~~~~~~~~~--~~~i~~~~v~~~~r~~Gig~~ 95 (155)
.+-++.++....|--+...+..-.+..+ ......+..+. +|++++++.+.++... ...|+.+.|+|++||+|+|..
T Consensus 17 ely~LlkLRv~VFVVEQ~CPY~E~Dg~Dl~~~~~Hl~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~ 96 (155)
T COG2153 17 ELYELLKLRVDVFVVEQNCPYPELDGKDLLGDTRHLLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQ 96 (155)
T ss_pred HHHHHHHhheeEEEEecCCCCcCcCCcccccccceEEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHH
Confidence 5566666666666322211110000011 02344555555 9999999999764433 466999999999999999999
Q ss_pred HHHHHHHHHHhC-CccEEEEEEecCCchhHhHHHHcCeEEEEEEeccccCCCceeEee
Q 031671 96 LLEAAIKKCRTR-TVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGFYSADRPAYERT 152 (155)
Q Consensus 96 ll~~~~~~~~~~-g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~~~~~~m~ 152 (155)
||..+++.+.+. .-+.+.+. +....+.||.+.||+..+ ..|..+|-+.+-|.
T Consensus 97 Lm~~AL~~~~~~~p~~~v~l~---AQahLq~fYa~~GFv~~~--e~yledGIpHv~M~ 149 (155)
T COG2153 97 LMEKALETAGREWPDKPVYLG---AQAHLQDFYASFGFVRVG--EEYLEDGIPHVGMI 149 (155)
T ss_pred HHHHHHHHHHhhCCCCCeEEe---hHHHHHHHHHHhCcEEcC--chhhcCCCCchhhh
Confidence 999999999987 35567776 677799999999999888 34666666666664
No 57
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=99.58 E-value=1.1e-13 Score=90.33 Aligned_cols=91 Identities=19% Similarity=0.247 Sum_probs=69.1
Q ss_pred ceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcC
Q 031671 52 GLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFG 131 (155)
Q Consensus 52 ~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~G 131 (155)
.-+++..+|++|+.+.......+..+| .+.++|+|||+|+|+.+..+++..|.++|+...+ .+ .|.+|+++-+|+|
T Consensus 166 ~Gf~i~~~~~iVs~~~s~~~~~~~~EI-~I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~W-Dc--~N~~S~~lA~kLG 241 (265)
T PF12746_consen 166 FGFCILHDGEIVSGCSSYFVYENGIEI-DIETHPEYRGKGLATAVAAAFILECLENGLYPSW-DC--HNLASIALAEKLG 241 (265)
T ss_dssp -EEEEEETTEEEEEEEEEEEETTEEEE-EEEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE--EE--SSHHHHHHHHHCT
T ss_pred cEEEEEECCEEEEEEEEEEEECCEEEE-EEEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCe-eC--CCHHHHHHHHHcC
Confidence 456666799999877665556667888 8999999999999999999999999999987643 44 6999999999999
Q ss_pred eEEEEEEeccccCCC
Q 031671 132 FQVDTLIQGFYSADR 146 (155)
Q Consensus 132 f~~~~~~~~~~~~~~ 146 (155)
|+.......|+..+.
T Consensus 242 f~~~~~Y~~Y~v~~~ 256 (265)
T PF12746_consen 242 FHFDFEYTAYEVNNS 256 (265)
T ss_dssp --EEEEEEEE-----
T ss_pred Ccccceeeeeeeccc
Confidence 999999988877543
No 58
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.57 E-value=5.4e-14 Score=94.99 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=70.1
Q ss_pred CceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHc
Q 031671 51 SGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKF 130 (155)
Q Consensus 51 ~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~ 130 (155)
..++++.++|++||++.+.. ..|..++|+|+|||+|+|+.|+.++++.+++.|+..+.+.+.+.| .+||+++
T Consensus 31 d~~vv~~~~~~lVg~g~l~g-----~~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~---~~fy~kl 102 (332)
T TIGR00124 31 EIFIAVYEDEEIIGCGGIAG-----NVIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEY---AALFEYC 102 (332)
T ss_pred CEEEEEEECCEEEEEEEEec-----CEEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchH---HHHHHHc
Confidence 45667777999999999852 248899999999999999999999999999999999999876544 5799999
Q ss_pred CeEEEEEEe
Q 031671 131 GFQVDTLIQ 139 (155)
Q Consensus 131 Gf~~~~~~~ 139 (155)
||.+.+...
T Consensus 103 GF~~i~~~~ 111 (332)
T TIGR00124 103 GFKTLAEAK 111 (332)
T ss_pred CCEEeeeec
Confidence 999998765
No 59
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=99.53 E-value=8.9e-13 Score=82.16 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=75.8
Q ss_pred hhHHHHHhccCCceEEEEECC--eEEEEEEEEec-------------------------------------CCCeEEEEE
Q 031671 40 RSFDEELKKKNSGLLYIQIHG--QVVGHVMYAWP-------------------------------------TSLSASITK 80 (155)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~--~~vG~~~~~~~-------------------------------------~~~~~~i~~ 80 (155)
..+....+.+...+++...++ +++|.+.+..+ .-..+.|..
T Consensus 16 nDL~~LlDaP~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvR 95 (196)
T PF13718_consen 16 NDLQLLLDAPNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVR 95 (196)
T ss_dssp HHHHHHHH-TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEE
T ss_pred HHHHHHhcCCcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEE
Confidence 456667777788888888888 99999988711 113688999
Q ss_pred EEEccCCCCCChHHHHHHHHHHHH-------------------------HhCCccEEEEEEecCCchhHhHHHHcCeEEE
Q 031671 81 LAVKENYRGQGHGEALLEAAIKKC-------------------------RTRTVLCITLHVDPLRTPAVNLYKKFGFQVD 135 (155)
Q Consensus 81 ~~v~~~~r~~Gig~~ll~~~~~~~-------------------------~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~ 135 (155)
++|+|++|++|+|+++++.+.+++ +..+++.+..... .+....+||.|+||.++
T Consensus 96 IAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG-~t~~Ll~FW~k~gf~pv 174 (196)
T PF13718_consen 96 IAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFG-ATPELLKFWQKNGFVPV 174 (196)
T ss_dssp EEE-CCC-SSSHHHHHHHHHHHT-----------------------------S-SEEEEEEE---HHHHHHHHCTT-EEE
T ss_pred EEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccC-CCHHHHHHHHHCCcEEE
Confidence 999999999999999999999999 4668888876655 57889999999999998
Q ss_pred EEEeccc-cCCCceeEeee
Q 031671 136 TLIQGFY-SADRPAYERTF 153 (155)
Q Consensus 136 ~~~~~~~-~~~~~~~~m~~ 153 (155)
.....-- ..|+.+++|.+
T Consensus 175 ~l~~~~n~~SGe~S~imlr 193 (196)
T PF13718_consen 175 YLGQTRNEASGEHSAIMLR 193 (196)
T ss_dssp EE-SS--TTT---EEEEEE
T ss_pred EEecCcccccCceeeeEEe
Confidence 7554321 23667777754
No 60
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=99.52 E-value=2.3e-13 Score=81.68 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=73.8
Q ss_pred eEEEEECCeEEEEEEEEecCC-----CeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHH
Q 031671 53 LLYIQIHGQVVGHVMYAWPTS-----LSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLY 127 (155)
Q Consensus 53 ~~~~~~~~~~vG~~~~~~~~~-----~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y 127 (155)
+|.+..++++||++.+.+.-+ ..++| +..|.|..||+|+|+.+++.+++.|++.|++.+.++|+.+|.+|.+.-
T Consensus 71 y~~v~~d~~ivG~i~lRh~Ln~~ll~~gGHI-GY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkvI 149 (174)
T COG3981 71 YWAVDEDGQIVGFINLRHQLNDFLLEEGGHI-GYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRKVI 149 (174)
T ss_pred EEEEecCCcEEEEEEeeeecchHHHhcCCcc-cceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHHH
Confidence 344444799999999985322 25667 788999999999999999999999999999999999999999999999
Q ss_pred HHcCeEEEEEEe
Q 031671 128 KKFGFQVDTLIQ 139 (155)
Q Consensus 128 ~~~Gf~~~~~~~ 139 (155)
+++|=....++.
T Consensus 150 ~~NGGile~~~~ 161 (174)
T COG3981 150 EANGGILENEFF 161 (174)
T ss_pred HhcCCEEeEEEc
Confidence 999988777654
No 61
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=99.50 E-value=7.3e-13 Score=79.47 Aligned_cols=126 Identities=17% Similarity=0.259 Sum_probs=91.9
Q ss_pred ceeEecCCCCCcchhHHHHHHHHhHhhCCCcHHHhh-hHHHHHhccCCceEEEE--ECCeEEEEEEEEe--cCCCeEEEE
Q 031671 5 GTVTELQRNSTNWTVVVDEIVKMEKKIFPKHESLAR-SFDEELKKKNSGLLYIQ--IHGQVVGHVMYAW--PTSLSASIT 79 (155)
Q Consensus 5 ~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~vG~~~~~~--~~~~~~~i~ 79 (155)
+.+.|+.. ..+.+++...+.+..|+..+.... .+.+.-+... ..++.. ...++||-..+.. ...+.+.+.
T Consensus 13 l~~vPiH~----rPELlk~~~~LIN~eWPRS~TsR~hSL~~ScDs~P-~sL~Ll~E~~~~VigH~rLS~i~n~~~al~VE 87 (225)
T KOG3397|consen 13 LFFVPLHD----RPELLKESMTLINSEWPRSDTSREHSLKKSCDSPP-MSLLLLNEENDEVLGHSRLSHLPNRDHALWVE 87 (225)
T ss_pred ceeEeccc----cHHHHHHHHHHHhccCCccchhhhhhhhcccCCCC-eeeeeecccccceeeeeccccCCCCCceeEEE
Confidence 45555432 234778888899999987765433 2222222222 223322 3667899998874 345688999
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEe
Q 031671 80 KLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 80 ~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 139 (155)
.+.|+.+.||+|+|+.||+.++.+++..|++.+++.+.. -.+||+++||+...-+.
T Consensus 88 sVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~D----Q~~FYe~lGYe~c~Pi~ 143 (225)
T KOG3397|consen 88 SVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDD----QCRFYESLGYEKCDPIV 143 (225)
T ss_pred EEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeeccc----chhhhhhhcccccCcee
Confidence 999999999999999999999999999999999998765 45999999999765443
No 62
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.42 E-value=4.6e-12 Score=90.23 Aligned_cols=86 Identities=17% Similarity=0.308 Sum_probs=68.5
Q ss_pred CCceEEEEE---CCeEEEEEEEEecCC--------CeEEEEEEE-----------EccCCCCCChHHHHHHHHHHHHHhC
Q 031671 50 NSGLLYIQI---HGQVVGHVMYAWPTS--------LSASITKLA-----------VKENYRGQGHGEALLEAAIKKCRTR 107 (155)
Q Consensus 50 ~~~~~~~~~---~~~~vG~~~~~~~~~--------~~~~i~~~~-----------v~~~~r~~Gig~~ll~~~~~~~~~~ 107 (155)
....|..+. ++.+||++.+..+.. +.+.|..+. ++|+|||+|+|+.|++++++.+++.
T Consensus 410 G~e~F~~y~~~~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~ 489 (522)
T TIGR01211 410 GTEFFLSYEDPKNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEE 489 (522)
T ss_pred CCeEEEEEEcCCCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHC
Confidence 345566655 578999999985432 245555555 3589999999999999999999999
Q ss_pred CccEEEEEEecCCchhHhHHHHcCeEEEEEE
Q 031671 108 TVLCITLHVDPLRTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 108 g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~ 138 (155)
|++.+.+. .|..+++||+|+||+..+..
T Consensus 490 G~~~i~v~---s~~~A~~FY~klGf~~~g~y 517 (522)
T TIGR01211 490 GSEKILVI---SGIGVREYYRKLGYELDGPY 517 (522)
T ss_pred CCCEEEEe---eCchHHHHHHHCCCEEEcce
Confidence 99999875 57899999999999987754
No 63
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=99.35 E-value=4.9e-12 Score=68.43 Aligned_cols=73 Identities=19% Similarity=0.186 Sum_probs=67.2
Q ss_pred CCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEE
Q 031671 59 HGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 59 ~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~ 136 (155)
+|.+|.++.. ++.+++..-++.|+|||||+.+.++....+.+.+.|+. ++..|.++|+.++++.+++||....
T Consensus 7 eG~PVSW~lm----dqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P-~Y~hv~~~N~~~~r~~~~lg~~~~p 79 (89)
T PF08444_consen 7 EGNPVSWSLM----DQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFP-FYGHVDEDNEASQRLSKSLGFIFMP 79 (89)
T ss_pred CCCEeEEEEe----cccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCC-eEeehHhccHHHHHHHHHCCCeecC
Confidence 7899999888 46788989999999999999999999999999999996 8899999999999999999998753
No 64
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=99.32 E-value=3.4e-11 Score=62.14 Aligned_cols=61 Identities=38% Similarity=0.471 Sum_probs=53.0
Q ss_pred EEEEECCeEEEEEEEEecC--CCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEE
Q 031671 54 LYIQIHGQVVGHVMYAWPT--SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITL 114 (155)
Q Consensus 54 ~~~~~~~~~vG~~~~~~~~--~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~ 114 (155)
+++..+++++|++.+.... ...+++..++|+|+|||+|+|+.++..+.+++++.+++.+.+
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 3455689999999998654 478999889999999999999999999999999988887765
No 65
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=99.30 E-value=1.2e-10 Score=67.11 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=69.0
Q ss_pred ceeEecCCCCCcchhHHHHHHHHhHhhCCCcHHHhhhHHHHHhccCCceEEEEECCeEEEEEEEEecCCCeEEEEEEEEc
Q 031671 5 GTVTELQRNSTNWTVVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVK 84 (155)
Q Consensus 5 ~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~ 84 (155)
++|.+++.-+. ++..++.+++ |. .....+...+ +....++.+..|++++|.+.+.. ++..+.+..++|.
T Consensus 2 LTI~rl~~ls~---Qd~iDL~KIw----p~--~~~~~l~~~l-~~~~~l~aArFNdRlLgAv~v~~-~~~~~~L~~l~VR 70 (128)
T PF12568_consen 2 LTIERLTTLSE---QDRIDLAKIW----PQ--QDPEQLEQWL-DEGHRLFAARFNDRLLGAVKVTI-SGQQAELSDLCVR 70 (128)
T ss_dssp -EEEE-SS--H---HHHHHHHHH-----TT--S-----------SSEEEEEEEETTEEEEEEEEEE-ETTEEEEEEEEE-
T ss_pred eEEEEcCCCCH---HHHHHHHHhC----CC--CCHHHHHHHh-ccCCeEEEEEechheeeeEEEEE-cCcceEEeeEEEe
Confidence 56777775532 3444444444 32 2222333333 44666778888999999999985 4669999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHhCCccEEEEEEec---CCc-hhHhHHHHcCeEEE
Q 031671 85 ENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDP---LRT-PAVNLYKKFGFQVD 135 (155)
Q Consensus 85 ~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~---~n~-~a~~~y~~~Gf~~~ 135 (155)
+-=|++|+|+.|++.+...+. +++...+.... .+. .+..|...|||...
T Consensus 71 evTRrRGVG~yLlee~~rq~p--~i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~~ 123 (128)
T PF12568_consen 71 EVTRRRGVGLYLLEEVLRQLP--DIKHWWLADEGVEPQDRAVMAAFMQACGFSAQ 123 (128)
T ss_dssp TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHHHHHHHHT-EE-
T ss_pred eccccccHHHHHHHHHHHHCC--CCcEEEEecCCCcccchHHHHHHHHHcCcccc
Confidence 999999999999999988873 45555554321 233 35688899999653
No 66
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=99.28 E-value=8.9e-12 Score=73.43 Aligned_cols=125 Identities=19% Similarity=0.282 Sum_probs=89.3
Q ss_pred CceeEecCCCCCcchhHHHHHHHHhHhhCCCcHHHhhh-HHHHHhccCCce---------EEEEECCeEEEEEEEEe---
Q 031671 4 NGTVTELQRNSTNWTVVVDEIVKMEKKIFPKHESLARS-FDEELKKKNSGL---------LYIQIHGQVVGHVMYAW--- 70 (155)
Q Consensus 4 ~~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~vG~~~~~~--- 70 (155)
.+.|||..++ +.++...+....||.++..... +...+.+-.... +.-...+.+||.+.-..
T Consensus 11 ~~~irp~i~e------~~q~~~~Lea~~FPe~erasfeii~~r~i~~pevc~glf~~~~h~~~~~~~tLIghIigs~~~~ 84 (190)
T KOG4144|consen 11 APRIRPGIPE------SCQRRHTLEASEFPEDERASFEIIRERFISVPEVCPGLFDEIRHFLTLCEGTLIGHIIGSLWDK 84 (190)
T ss_pred cccCCCCChH------HHHHHhccccccCChhHHHHHHHHHHHHhcchhhcchhhhhHHhhhhhccccceehhhcccCcc
Confidence 3578888888 7999999999999876543332 233333322111 11112678888886551
Q ss_pred ------------cCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhC-CccEEEEEEecCCchhHhHHHHcCeEEEEE
Q 031671 71 ------------PTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTR-TVLCITLHVDPLRTPAVNLYKKFGFQVDTL 137 (155)
Q Consensus 71 ------------~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~ 137 (155)
..+....|..+.|+|+||.+|+|..|+...++..-++ -..++.+. ..++.+.||++.||+.++.
T Consensus 85 E~lt~ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li---~h~pLvPFYEr~gFk~vgp 161 (190)
T KOG4144|consen 85 ERLTQESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALI---CHDPLVPFYERFGFKAVGP 161 (190)
T ss_pred hhhhHHHHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeee---ecCCccchhHhcCceeecc
Confidence 2245689999999999999999999999988877766 34466666 5667999999999999875
No 67
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=99.19 E-value=7.4e-10 Score=81.30 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=80.8
Q ss_pred hhHHHHHhccCCceEEEEECC-eEEEEEEEEec------------------------------------CCCeEEEEEEE
Q 031671 40 RSFDEELKKKNSGLLYIQIHG-QVVGHVMYAWP------------------------------------TSLSASITKLA 82 (155)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~-~~vG~~~~~~~------------------------------------~~~~~~i~~~~ 82 (155)
..+...++.++..++++..++ .+|+.+.+... .-..+.|..++
T Consensus 459 ~DL~~L~DaP~h~~~al~~~~~~~va~~qva~EG~l~~~~i~~~~~g~r~~GnlIp~~l~~~~~~~~fa~l~G~RIvRIA 538 (758)
T COG1444 459 NDLRRLLDAPHHHIFALRAPEGKPVAVWQVAEEGGLSDELIDIWLGGRRPRGNLIPDLLAKHHRDPEFAKLVGWRIVRIA 538 (758)
T ss_pred HHHHHHhcCCCCeeEEEEcCCCceEEEEEeeccCCCcHHHHHHHhcCCCCCCcccHHHHHHhhcchhhcccceeeEEEEE
Confidence 355556666777777777765 78777766511 01257799999
Q ss_pred EccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEecccc-CCCceeEee
Q 031671 83 VKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGFYS-ADRPAYERT 152 (155)
Q Consensus 83 v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~-~~~~~~~m~ 152 (155)
|+|++|++|||++|++.+.++++ .|++.+..... .++...+||.||||.++......-. .|+-.++|.
T Consensus 539 vhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG-~t~~L~rFW~rnGF~pVhls~~rn~~SGeys~i~l 607 (758)
T COG1444 539 VHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFG-YTEELLRFWLRNGFVPVHLSPTRNASSGEYTAIVL 607 (758)
T ss_pred eCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccC-CCHHHHHHHHHcCeEEEEecCccCcCCCceeEEEE
Confidence 99999999999999999999997 56777766544 6788999999999999986553222 244444443
No 68
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=99.16 E-value=9.7e-10 Score=59.14 Aligned_cols=71 Identities=20% Similarity=0.313 Sum_probs=54.1
Q ss_pred EEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHc
Q 031671 54 LYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKF 130 (155)
Q Consensus 54 ~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~ 130 (155)
|.+..+|+.+|++.+.. .++...+....|.|++||+|+|+.|++.++++++++|.+ +...| .-+.+++++.
T Consensus 2 F~~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~k-v~p~C----~y~~~~~~~h 72 (78)
T PF14542_consen 2 FELKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLK-VVPTC----SYVAKYFRRH 72 (78)
T ss_dssp EEEESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-E-EEETS----HHHHHHHHH-
T ss_pred EEEEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCE-EEEEC----HHHHHHHHhC
Confidence 34455788999999964 778999999999999999999999999999999999875 33322 2355555543
No 69
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=99.06 E-value=3.7e-10 Score=64.87 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=60.2
Q ss_pred CCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEE--ecCCchhHhHHHHcCeEEEEEEec
Q 031671 73 SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHV--DPLRTPAVNLYKKFGFQVDTLIQG 140 (155)
Q Consensus 73 ~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~--~~~n~~a~~~y~~~Gf~~~~~~~~ 140 (155)
+...++..+.|...-||+|+|++|.+.+.+++...|...+.+.| ++.|+.+-.|.-.+||.++|...-
T Consensus 82 e~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~i 151 (167)
T COG3818 82 ENFFYVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATI 151 (167)
T ss_pred CceEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEE
Confidence 45789999999999999999999999999999999988887775 456888999999999999986653
No 70
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=99.02 E-value=2.4e-09 Score=59.63 Aligned_cols=64 Identities=25% Similarity=0.345 Sum_probs=56.4
Q ss_pred cCCceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEE
Q 031671 49 KNSGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCI 112 (155)
Q Consensus 49 ~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~ 112 (155)
.....++...+|..+|.+......++...|...+|.+++||||+|+.|+.++++.+++.|.+.+
T Consensus 13 ~~~~~y~~~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kii 76 (99)
T COG2388 13 GENGRYVLTDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKII 76 (99)
T ss_pred cCceEEEEecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEc
Confidence 3556677777999999999987777899999999999999999999999999999999987544
No 71
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=4e-08 Score=57.92 Aligned_cols=76 Identities=18% Similarity=0.277 Sum_probs=64.0
Q ss_pred EEEEEEEEec---C-------CCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhC-CccEEEEEEecCCchhHhHHHHc
Q 031671 62 VVGHVMYAWP---T-------SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTR-TVLCITLHVDPLRTPAVNLYKKF 130 (155)
Q Consensus 62 ~vG~~~~~~~---~-------~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n~~a~~~y~~~ 130 (155)
.||-+.+... + -..+++.-+.-.|.-||+|+|+..+..++.++... ++.+..+.+...|.+++++|+|+
T Consensus 84 MvGDvNlFlt~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~ 163 (185)
T KOG4135|consen 84 MVGDVNLFLTTSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKF 163 (185)
T ss_pred hccceeeEEecCCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHh
Confidence 5777765421 1 12577877888999999999999999999999876 88899999999999999999999
Q ss_pred CeEEEEE
Q 031671 131 GFQVDTL 137 (155)
Q Consensus 131 Gf~~~~~ 137 (155)
+|+....
T Consensus 164 ~f~q~~~ 170 (185)
T KOG4135|consen 164 LFTQVFY 170 (185)
T ss_pred hheeeee
Confidence 9998765
No 72
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=98.83 E-value=9.8e-08 Score=54.17 Aligned_cols=106 Identities=16% Similarity=0.210 Sum_probs=72.9
Q ss_pred HHHHHHHhHhhCCCcHHHhhhHHHHHhccCCceEEEEECCeEEEEEEEEe----cCCCeEEEEEEEEccCCCCCChHHHH
Q 031671 21 VDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIQIHGQVVGHVMYAW----PTSLSASITKLAVKENYRGQGHGEAL 96 (155)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~----~~~~~~~i~~~~v~~~~r~~Gig~~l 96 (155)
+....++...-|..-+ .+...+..+....++...+|-+||++.+.. +.+-...+..+++...|||+|+|++.
T Consensus 11 f~~~ie~g~dg~~~~~----gl~~~w~~~~~~~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~a 86 (143)
T COG5628 11 FDRAVELGPDGYSGYP----GLETYWRDPVREAWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAA 86 (143)
T ss_pred hhHHHhcCCCcccCCc----chhhhhcCcccceeEEEECCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHH
Confidence 3444444444443322 334444555556677777999999998762 22335667789999999999999999
Q ss_pred HHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEE
Q 031671 97 LEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQV 134 (155)
Q Consensus 97 l~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~ 134 (155)
.+++...++.. ..+-+...|.+|+.||++.-+..
T Consensus 87 aK~If~~~~g~----w~Va~i~EN~PA~~fwK~~~~t~ 120 (143)
T COG5628 87 AKAIFGSAWGV----WQVATVRENTPARAFWKRVAETY 120 (143)
T ss_pred HHHHHHHhhce----EEEEEeccCChhHHHHHhhhccc
Confidence 99987766542 34445568999999999987653
No 73
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=3.7e-07 Score=57.58 Aligned_cols=138 Identities=20% Similarity=0.192 Sum_probs=100.1
Q ss_pred CceeEecCCCCCcchhHHHHHHHHhHhhCCCcH--HHhhhHHHHHhccCCceEEEEE-CCeEEEEEEEEe-cCCC--eEE
Q 031671 4 NGTVTELQRNSTNWTVVVDEIVKMEKKIFPKHE--SLARSFDEELKKKNSGLLYIQI-HGQVVGHVMYAW-PTSL--SAS 77 (155)
Q Consensus 4 ~~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~vG~~~~~~-~~~~--~~~ 77 (155)
.+.+|.++..+ ++.+...+....|...+ .........+......++.++. ++++||...-.+ ...+ ..+
T Consensus 2 ~vvvrrl~dp~-----el~~~~dV~~~aWg~~d~~~~~~d~i~al~~~GGlvlgAf~~dg~lVGls~G~pg~r~g~~y~y 76 (266)
T COG3375 2 KVVVRRLTDPA-----ELDEAEDVQASAWGSEDRDGAPADTIRALRYHGGLVLGAFSADGRLVGLSYGYPGGRGGSLYLY 76 (266)
T ss_pred ceeEEecCCHH-----HHHHHHHHHHHHhCccccccchHHHHHHHHhcCCeEEEEEcCCCcEEEEEeccCCcCCCceeee
Confidence 46777776553 78888888888876432 2333333345555666667776 559999886654 2122 344
Q ss_pred EEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhH-HHHcCeEEEEEEeccccCCC
Q 031671 78 ITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNL-YKKFGFQVDTLIQGFYSADR 146 (155)
Q Consensus 78 i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~-y~~~Gf~~~~~~~~~~~~~~ 146 (155)
-+.+.|.|++++.|+|-+|-..--+++.++|+..+.++.++-|.---.| +.|+|-....-.++||..-.
T Consensus 77 SH~~gV~e~~k~sglg~aLK~~Qre~a~~~G~tli~WTfDPl~alNA~fNi~KLGa~artYi~nfYg~m~ 146 (266)
T COG3375 77 SHMLGVREEVKGSGLGVALKMKQRERALSMGYTLIAWTFDPLNALNARFNISKLGAIARTYIKNFYGEMA 146 (266)
T ss_pred eeehhccccccccchhhhhHHHHHHHHHhcCeeeEEEecccchhhhhhcchhhhceeEEEeeccccchhc
Confidence 4568999999999999999999999999999999999988877543333 57999888888889998643
No 74
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=98.78 E-value=5.1e-08 Score=65.39 Aligned_cols=85 Identities=19% Similarity=0.291 Sum_probs=68.3
Q ss_pred CCceEEEEECCeEEEEEEEEe-----c--CCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCch
Q 031671 50 NSGLLYIQIHGQVVGHVMYAW-----P--TSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTP 122 (155)
Q Consensus 50 ~~~~~~~~~~~~~vG~~~~~~-----~--~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~ 122 (155)
.....+++.+.++++-+...+ . .-+.++|..+++.|+|||+|..++|+.+.++...+.|..-..+. +.
T Consensus 38 ~~n~~vi~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~-----P~ 112 (389)
T COG4552 38 EPNSYVIYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALH-----PF 112 (389)
T ss_pred CCcceEEeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEec-----cC
Confidence 455678888888988776542 1 12478899999999999999999999999999999998766554 34
Q ss_pred hHhHHHHcCeEEEEEEe
Q 031671 123 AVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 123 a~~~y~~~Gf~~~~~~~ 139 (155)
+.++|+|.||+..+...
T Consensus 113 s~~iYrKfGye~asn~~ 129 (389)
T COG4552 113 SGGIYRKFGYEYASNYH 129 (389)
T ss_pred chhhHhhccccccceEE
Confidence 67999999999877543
No 75
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.78 E-value=1.3e-07 Score=61.99 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=66.9
Q ss_pred eEEEEE-CCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcC
Q 031671 53 LLYIQI-HGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFG 131 (155)
Q Consensus 53 ~~~~~~-~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~G 131 (155)
+++++. ++++|++.++. .-.|..++|+|.+||-|++-+|+.+++..+.++|...+.+.+-+ ...++|+.||
T Consensus 38 ~v~~~~~~~~iiacGsia-----GnvikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp---~~~~lFk~~G 109 (352)
T COG3053 38 FVAIYRDNEEIIACGSIA-----GNVIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKP---EYAALFKQCG 109 (352)
T ss_pred EEEEEcCCCcEEEecccc-----cceeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEech---hHHHHHHhCC
Confidence 344444 59999999885 23578999999999999999999999999999999999999655 4679999999
Q ss_pred eEEEEEEec
Q 031671 132 FQVDTLIQG 140 (155)
Q Consensus 132 f~~~~~~~~ 140 (155)
|.++...+.
T Consensus 110 F~~i~~~~~ 118 (352)
T COG3053 110 FSEIASAEN 118 (352)
T ss_pred ceEeeccCc
Confidence 998876543
No 76
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=98.63 E-value=3.9e-06 Score=52.55 Aligned_cols=115 Identities=15% Similarity=0.237 Sum_probs=79.8
Q ss_pred HHHHHHHHhHhhCCCc----HHHhhhHH-HHHhccCCceEEEEECCeEEEEEEEEe---------------------cCC
Q 031671 20 VVDEIVKMEKKIFPKH----ESLARSFD-EELKKKNSGLLYIQIHGQVVGHVMYAW---------------------PTS 73 (155)
Q Consensus 20 ~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~vG~~~~~~---------------------~~~ 73 (155)
+++++..+....|.+. -.....++ +.+++....++++.++|+++|++.+.+ ...
T Consensus 9 ~l~~~~rlR~~vFv~rlgW~v~~~dg~E~DqyD~~~~~ylv~~~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~ 88 (182)
T PF00765_consen 9 LLEEMFRLRHRVFVDRLGWDVPCEDGMEIDQYDDPDAVYLVALDDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSP 88 (182)
T ss_dssp HHHHHHHHHHHHHTTCSCCCHHCCTSEE--TTGCTT-EEEEEEETTEEEEEEEEEETTS--HHHHCTGGGHTTS---SST
T ss_pred HHHHHHHHHHHHHHHhhCCCCcCCCCcEeeecCCCCCeEEEEEECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCC
Confidence 6778888888877532 12222222 234444555667777999999999872 124
Q ss_pred CeEEEEEEEEccCCCC------CChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEE
Q 031671 74 LSASITKLAVKENYRG------QGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTL 137 (155)
Q Consensus 74 ~~~~i~~~~v~~~~r~------~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~ 137 (155)
..+++..++|+++.++ .-+...|+..+.++|.++|++.+...+. ....++++++||.....
T Consensus 89 ~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~~gi~~~v~V~~---~~~~r~l~r~G~~~~~l 155 (182)
T PF00765_consen 89 DVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFALSNGIRHIVGVVD---PAMERILRRAGWPVRRL 155 (182)
T ss_dssp TEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHHCTT-SEEEEEEE---HHHHHHHHHCT-EEEES
T ss_pred cceeeeEEEEcccccccccccccHHHHHHHHHHHHHHHHCCCCEEEEEEC---hHHHHHHHHcCCceEEC
Confidence 5899999999998532 2467899999999999999999988754 56899999999997653
No 77
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=98.47 E-value=3.2e-05 Score=49.54 Aligned_cols=115 Identities=9% Similarity=0.147 Sum_probs=78.2
Q ss_pred hhHHHHHHHHhHhhCCCcH--H--HhhhHHH-HHhccCCceEEEE-ECCeEEEEEEEEec--------------------
Q 031671 18 TVVVDEIVKMEKKIFPKHE--S--LARSFDE-ELKKKNSGLLYIQ-IHGQVVGHVMYAWP-------------------- 71 (155)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~--~--~~~~~~~-~~~~~~~~~~~~~-~~~~~vG~~~~~~~-------------------- 71 (155)
..+++++..+....|.... . .....+. .+++....+++.. .+|++||++.+.+.
T Consensus 15 ~~~l~~~~rLR~~VF~~elgW~~~~~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~ 94 (207)
T PRK13834 15 ASLLKQMHRLRARVFGGRLGWDVSITDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLN 94 (207)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCC
Confidence 4577888888888775321 1 1122222 2233333444444 37899999987521
Q ss_pred -CCCeEEEEEEEEccCCCCC---C----hHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEE
Q 031671 72 -TSLSASITKLAVKENYRGQ---G----HGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVD 135 (155)
Q Consensus 72 -~~~~~~i~~~~v~~~~r~~---G----ig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~ 135 (155)
.++.+++..++|++++++. + +...|+..+.+++...|++.+...+.+ ...+.++++||...
T Consensus 95 ~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~---~~~r~l~r~G~~~~ 163 (207)
T PRK13834 95 AHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDL---RFERILARAGWPMQ 163 (207)
T ss_pred CCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECH---HHHHHHHHcCCCeE
Confidence 2458999999999986322 2 567899999999999999998877443 67789999998764
No 78
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=98.44 E-value=5.2e-06 Score=54.40 Aligned_cols=113 Identities=18% Similarity=0.294 Sum_probs=76.7
Q ss_pred HHHHHHHHhHhhCCCcHHHh------hhHHHHHhccCCceEEEEE--CCeEEEEEEEEec--------------------
Q 031671 20 VVDEIVKMEKKIFPKHESLA------RSFDEELKKKNSGLLYIQI--HGQVVGHVMYAWP-------------------- 71 (155)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~vG~~~~~~~-------------------- 71 (155)
+++.+..+....|-....+. ...+....+.....+++.. +|++||++.+...
T Consensus 18 ~~~~~~~lR~~VFv~e~gw~~~~~~~~~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~ 97 (241)
T TIGR03694 18 LLEEAFRLRYQVYCEELGFEPPSDYPDGLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLD 97 (241)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHHHhccccc
Confidence 56777777777763321111 1122221223344555543 5899999987631
Q ss_pred ----------CCCeEEEEEEEEccCCCCC--------C--------------------hHHHHHHHHHHHHHhCCccEEE
Q 031671 72 ----------TSLSASITKLAVKENYRGQ--------G--------------------HGEALLEAAIKKCRTRTVLCIT 113 (155)
Q Consensus 72 ----------~~~~~~i~~~~v~~~~r~~--------G--------------------ig~~ll~~~~~~~~~~g~~~~~ 113 (155)
.+..+++..++|+|++|++ | +...|+..+.+++.+.|++.+.
T Consensus 98 ~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~ 177 (241)
T TIGR03694 98 GLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGITHWY 177 (241)
T ss_pred hhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCCCcEEE
Confidence 1247889999999999974 2 4577999999999999999888
Q ss_pred EEEecCCchhHhHHHHcCeEEE
Q 031671 114 LHVDPLRTPAVNLYKKFGFQVD 135 (155)
Q Consensus 114 ~~~~~~n~~a~~~y~~~Gf~~~ 135 (155)
..+. ....++++++|+...
T Consensus 178 ~v~~---~~l~r~l~r~G~~~~ 196 (241)
T TIGR03694 178 AIME---PRLARLLSRFGIQFR 196 (241)
T ss_pred EEeC---HHHHHHHHHhCCceE
Confidence 8744 468889999998654
No 79
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=98.42 E-value=4.4e-07 Score=52.46 Aligned_cols=44 Identities=48% Similarity=0.727 Sum_probs=40.6
Q ss_pred EEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCe
Q 031671 81 LAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGF 132 (155)
Q Consensus 81 ~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf 132 (155)
++|+|+|||+|+|+.|++.+++.+...|+. .|..+..++.+.||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~--------~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS--------LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce--------ehHHHHHHHHhcCC
Confidence 999999999999999999999999998765 67788999999998
No 80
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=98.33 E-value=3.6e-05 Score=52.46 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=68.0
Q ss_pred CceeEecCCCCCcchhHHHHHHHHhHhh------CCCc-HHHhhhHHHHHh--------c--cCCceEEEEE--CCeEEE
Q 031671 4 NGTVTELQRNSTNWTVVVDEIVKMEKKI------FPKH-ESLARSFDEELK--------K--KNSGLLYIQI--HGQVVG 64 (155)
Q Consensus 4 ~~~ir~~~~~d~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~--------~--~~~~~~~~~~--~~~~vG 64 (155)
|+.|||++.+ |++.+.++.... .|.+ +.+.+.+..... . +....+|.++ .|++||
T Consensus 1 M~viRp~~~~------Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~vvG 74 (342)
T PF04958_consen 1 MLVIRPARPS------DLDALYALARESGPGFTSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEVVG 74 (342)
T ss_dssp -EEEEE--GG------GHHHHHHHHHHS-TT-TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--EEE
T ss_pred CeEEecCchh------hHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcEEE
Confidence 3789999999 788888877654 2333 223333322211 1 1224566665 699999
Q ss_pred EEEEE------------------------------------ecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhC-
Q 031671 65 HVMYA------------------------------------WPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTR- 107 (155)
Q Consensus 65 ~~~~~------------------------------------~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~- 107 (155)
++.+. .+-.+..+|..++++|+||+.|.|+.|-+.-.=.+.+.
T Consensus 75 ts~I~a~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~~~ 154 (342)
T PF04958_consen 75 TSAIEAAVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQHR 154 (342)
T ss_dssp EEEEESSTTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH-G
T ss_pred EEeEEeccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHHHHHHHhCh
Confidence 99886 11234678999999999999999997776655444432
Q ss_pred --CccEEEEEEec--CCchhHhHHHHcCeE
Q 031671 108 --TVLCITLHVDP--LRTPAVNLYKKFGFQ 133 (155)
Q Consensus 108 --g~~~~~~~~~~--~n~~a~~~y~~~Gf~ 133 (155)
=.+++...... +..+--.||+.+|-.
T Consensus 155 ~rF~~~viAElrG~~De~G~SPFWdalG~~ 184 (342)
T PF04958_consen 155 ERFADRVIAELRGVSDEDGRSPFWDALGRH 184 (342)
T ss_dssp GGS-SEEEEE--B---TT---HHHHHTGGG
T ss_pred hhcchheeeeccCCcCCCCCCchHHHhhcc
Confidence 12344444221 223466899888744
No 81
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.31 E-value=2.8e-06 Score=59.67 Aligned_cols=126 Identities=13% Similarity=0.191 Sum_probs=89.5
Q ss_pred CceeEecCCCCCcchhHHHHHHHHhHhhCCCcHH----HhhhHHHHHhccCCceEEEEE-----CCeEEEEEEEEecCCC
Q 031671 4 NGTVTELQRNSTNWTVVVDEIVKMEKKIFPKHES----LARSFDEELKKKNSGLLYIQI-----HGQVVGHVMYAWPTSL 74 (155)
Q Consensus 4 ~~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-----~~~~vG~~~~~~~~~~ 74 (155)
.+++++.+.. .++.+.++.+..-.-... ......+...++....+-+.. |+-+||++.+. ..+.
T Consensus 413 ~l~vs~~de~------~i~RIsQLtqkTNQFnlTtkRy~e~dV~~~~~~~~~li~sv~l~DKfgDnGiigvviv~-kk~~ 485 (574)
T COG3882 413 RLTVSKFDEV------NIPRISQLTQKTNQFNLTTKRYNEEDVRQMQEDPNFLIFSVSLKDKFGDNGIIGVVIVE-KKES 485 (574)
T ss_pred EEEEeecccc------CcHHHHHHhhcccceeechhhhcHHHHHHHhhCCCeEEEEEEeccccccCceEEEEEEE-ecCC
Confidence 3566666666 677888877665432222 222333333333332332221 67799999986 4457
Q ss_pred eEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEec--CCchhHhHHHHcCeEEEE
Q 031671 75 SASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDP--LRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 75 ~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~--~n~~a~~~y~~~Gf~~~~ 136 (155)
.+.|..+...-.--|+++-++|+..+++.|...|+..+.....+ .|.+...||+++||+..+
T Consensus 486 ~w~IDt~lmSCRVlgRkvE~~l~~~~~e~A~~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~ 549 (574)
T COG3882 486 EWFIDTFLMSCRVLGRKVEQRLMNSLEEQALSEGINTIRGYYIPTEKNAPVSDFYERMGFKLKG 549 (574)
T ss_pred eEEhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEecccccCCcHHHHHHHhcccccc
Confidence 88888888888888999999999999999999999988887544 588999999999999655
No 82
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=98.31 E-value=4.8e-05 Score=45.47 Aligned_cols=65 Identities=17% Similarity=0.053 Sum_probs=54.2
Q ss_pred CceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEE
Q 031671 51 SGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHV 116 (155)
Q Consensus 51 ~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~ 116 (155)
..++++..+|++||+..... .++..+.....++|+++..+.|..|+..+++++.+.|++.+.+..
T Consensus 71 ~~l~~~~~~g~~va~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~ 135 (142)
T PF13480_consen 71 LRLFVLYDGGEPVAFALGFR-HGGTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGG 135 (142)
T ss_pred EEEEEEEECCEEEEEEEEEE-ECCEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 34566667999999997754 455777778899999999999999999999999999998777653
No 83
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=98.25 E-value=3.7e-05 Score=47.85 Aligned_cols=114 Identities=14% Similarity=0.115 Sum_probs=66.9
Q ss_pred HHHHHHHHhHhhCCC-cHHHhhhHHHHHhccCCceEEEE-ECCeEEEEEEEEe-------cCCCeEEEEEEEEccCCCCC
Q 031671 20 VVDEIVKMEKKIFPK-HESLARSFDEELKKKNSGLLYIQ-IHGQVVGHVMYAW-------PTSLSASITKLAVKENYRGQ 90 (155)
Q Consensus 20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~-------~~~~~~~i~~~~v~~~~r~~ 90 (155)
.++++..+....-.. ...-...+.+.+.+.-...+++. ..+++|+.+.+.. .+++...++..+++|+|||+
T Consensus 14 ~~d~fmk~~g~~r~~Fk~~Di~~wk~sf~~~Y~l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~ 93 (181)
T PF06852_consen 14 YFDQFMKLHGNERWNFKRNDIKLWKESFDDDYWLVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGK 93 (181)
T ss_pred HHHHHHHHhcCCcccccHHHHHHHHHhhccCeEEEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCc
Confidence 566666665442110 01112244444443222233333 3667888776642 13458899999999999999
Q ss_pred ChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHH-HcCeEEEEE
Q 031671 91 GHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYK-KFGFQVDTL 137 (155)
Q Consensus 91 Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~-~~Gf~~~~~ 137 (155)
|+++.+-..+.+..+..+-. ..+. .+..+.++|. -+||...+.
T Consensus 94 ~~~kl~~~~~~~~~~~~~~N-~~~~---~~~~~~~~w~k~~G~~~~~h 137 (181)
T PF06852_consen 94 GIMKLQDDICMDELDSVDDN-SVAQ---GNVKMSNFWHKMFGFDDYGH 137 (181)
T ss_pred chHHHHHHHHHHHhccCCCc-eeee---cCHHHHHHHHHHhCCCCCcc
Confidence 99975555555555443333 3333 6667888885 569888776
No 84
>PRK10456 arginine succinyltransferase; Provisional
Probab=98.18 E-value=3.3e-05 Score=52.56 Aligned_cols=90 Identities=19% Similarity=0.344 Sum_probs=59.7
Q ss_pred ceeEecCCCCCcchhHHHHHHHHhHhh------CCCcH-HHhhhHHHHHh--------ccCCceEEEEE--CCeEEEEEE
Q 031671 5 GTVTELQRNSTNWTVVVDEIVKMEKKI------FPKHE-SLARSFDEELK--------KKNSGLLYIQI--HGQVVGHVM 67 (155)
Q Consensus 5 ~~ir~~~~~d~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~--~~~~vG~~~ 67 (155)
+.|||++.. |++.+.++.... .|.+. .+..++..... ......+|.++ .|++||++.
T Consensus 2 ~vvRpv~~~------Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~ 75 (344)
T PRK10456 2 MVIRPVERS------DLAALMQLAGKTGGGLTSLPANEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICA 75 (344)
T ss_pred eEEecCccc------cHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEe
Confidence 789999999 788888776654 34333 23333333221 12334556664 689999998
Q ss_pred EEe------------------------------------cCCCeEEEEEEEEccCCCCCChHHHHHHHH
Q 031671 68 YAW------------------------------------PTSLSASITKLAVKENYRGQGHGEALLEAA 100 (155)
Q Consensus 68 ~~~------------------------------------~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~ 100 (155)
+.. +-.+..+|..++++|+||+.|.|+.|-+.-
T Consensus 76 I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~G~LLSr~R 144 (344)
T PRK10456 76 IEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKSR 144 (344)
T ss_pred EEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCchhHHHHHH
Confidence 760 112357799999999999999998765544
No 85
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.05 E-value=0.00072 Score=42.77 Aligned_cols=118 Identities=14% Similarity=0.253 Sum_probs=79.7
Q ss_pred chhHHHHHHHHhHhhCCC----cHHHhhhHH-HHHhccCCceEEE-EECCeEEEEEEEEe--------------------
Q 031671 17 WTVVVDEIVKMEKKIFPK----HESLARSFD-EELKKKNSGLLYI-QIHGQVVGHVMYAW-------------------- 70 (155)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~vG~~~~~~-------------------- 70 (155)
....++++..+....|.. +......++ +.+++.+..++++ ..+|+++|++.+.+
T Consensus 13 ~~~~l~em~rlR~~vF~erL~W~v~~~~g~E~DqyD~~~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~ 92 (209)
T COG3916 13 FPKALEEMHRLRYQVFKERLGWDVVCIDGFEIDQYDNLDTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPP 92 (209)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCceeccCCccccccCCCCceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCC
Confidence 334667777777777632 211112222 2333444455555 45999999998861
Q ss_pred -cCCCeEEEEEEEEcc--CCCCC---C-hHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEE
Q 031671 71 -PTSLSASITKLAVKE--NYRGQ---G-HGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTL 137 (155)
Q Consensus 71 -~~~~~~~i~~~~v~~--~~r~~---G-ig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~ 137 (155)
.+++.++...++|++ .-+.. . ++..|+.-+.+++.++|++.|...+ .....+.+++.||.....
T Consensus 93 P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~G~~~IvtVt---~~~meril~r~Gw~~~ri 163 (209)
T COG3916 93 PSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALARGITGIVTVT---DTGMERILRRAGWPLTRI 163 (209)
T ss_pred CCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHcCCceEEEEE---chHHHHHHHHcCCCeEEc
Confidence 223578899999886 32222 2 3678999999999999999998874 457899999999987653
No 86
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=98.02 E-value=1.1e-05 Score=42.06 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=27.1
Q ss_pred eEEEEEEEEccCCCCCChHHHHHHHHHHHH
Q 031671 75 SASITKLAVKENYRGQGHGEALLEAAIKKC 104 (155)
Q Consensus 75 ~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~ 104 (155)
.+.|..++|+|.+|++|||+.|++.+.+..
T Consensus 5 ~~GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 5 VCGISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EEEeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 567889999999999999999999998764
No 87
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=97.97 E-value=0.0002 Score=40.24 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=51.6
Q ss_pred ceEEEEECCeEEEEEEEEecC--CCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCc
Q 031671 52 GLLYIQIHGQVVGHVMYAWPT--SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRT 121 (155)
Q Consensus 52 ~~~~~~~~~~~vG~~~~~~~~--~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~ 121 (155)
..+-++.++...|++.++.+. +...+++.++|.|..|++|+|..+.+.+.+. ...+...+.++|+
T Consensus 9 ~~~~~y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d-----~~~L~Wrsr~~n~ 75 (99)
T cd04264 9 RLHAIYLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRD-----FPKLFWRSRKTNP 75 (99)
T ss_pred cceEEEEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhh-----CCceEEEeCCCCc
Confidence 445566677888888887544 4789999999999999999999999988766 2467777776665
No 88
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=97.93 E-value=0.00013 Score=49.53 Aligned_cols=89 Identities=15% Similarity=0.189 Sum_probs=57.5
Q ss_pred eEecCCCCCcchhHHHHHHHHhHhh------CCCcH-HHhhhHHHHHh---------ccCCceEEEEE--CCeEEEEEEE
Q 031671 7 VTELQRNSTNWTVVVDEIVKMEKKI------FPKHE-SLARSFDEELK---------KKNSGLLYIQI--HGQVVGHVMY 68 (155)
Q Consensus 7 ir~~~~~d~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~--~~~~vG~~~~ 68 (155)
|||++.. |++.+.++.... .|.+. .+..++..... ......+|.++ .|++||++.+
T Consensus 2 iRpv~~~------Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~I 75 (336)
T TIGR03245 2 VRPSRFA------DLPAIERLANESAIGVTSLPADRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSSI 75 (336)
T ss_pred cccCccc------cHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEeE
Confidence 7899999 777777776654 34332 23333322211 12334556665 6899999987
Q ss_pred Ee------------------------------------cCCCeEEEEEEEEccCCCCCChHHHHHHHHH
Q 031671 69 AW------------------------------------PTSLSASITKLAVKENYRGQGHGEALLEAAI 101 (155)
Q Consensus 69 ~~------------------------------------~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~ 101 (155)
.. +-.+..+|..++++|+||+.|.|+.|-+.-.
T Consensus 76 ~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~lLSr~Rf 144 (336)
T TIGR03245 76 VASAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEAAELLSRARL 144 (336)
T ss_pred EecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhHHHHHHH
Confidence 60 1124678999999999999999987655443
No 89
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=97.87 E-value=0.00023 Score=48.51 Aligned_cols=88 Identities=18% Similarity=0.306 Sum_probs=57.3
Q ss_pred eEecCCCCCcchhHHHHHHHHhHhh------CCCcH-HHhhhHHHHHh--------ccCCceEEEEE--CCeEEEEEEEE
Q 031671 7 VTELQRNSTNWTVVVDEIVKMEKKI------FPKHE-SLARSFDEELK--------KKNSGLLYIQI--HGQVVGHVMYA 69 (155)
Q Consensus 7 ir~~~~~d~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~--~~~~vG~~~~~ 69 (155)
|||++.. |++.+.++.... .|.+. .+..++..... ......+|.++ .|++||++.+.
T Consensus 2 vRPv~~~------Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~ 75 (336)
T TIGR03244 2 VRPVETS------DLDALYQLAQSTGIGLTSLPANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIE 75 (336)
T ss_pred cccCccc------cHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEE
Confidence 7899999 787887776654 34333 23333333221 11334556665 68999999876
Q ss_pred e------------------------------------cCCCeEEEEEEEEccCCCCCChHHHHHHHH
Q 031671 70 W------------------------------------PTSLSASITKLAVKENYRGQGHGEALLEAA 100 (155)
Q Consensus 70 ~------------------------------------~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~ 100 (155)
. +-.+..+|..++++|+||+.|.|+.|-+.-
T Consensus 76 a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~G~LLSr~R 142 (336)
T TIGR03244 76 AAVGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGNGRLLSKSR 142 (336)
T ss_pred ecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcchhhHHHHH
Confidence 0 112367899999999999999998765544
No 90
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=97.82 E-value=0.0003 Score=47.85 Aligned_cols=89 Identities=18% Similarity=0.316 Sum_probs=57.2
Q ss_pred eEecCCCCCcchhHHHHHHHHhHhh------CCCcH-HHhhhHHHHHh--------ccCCceEEEEE--CCeEEEEEEEE
Q 031671 7 VTELQRNSTNWTVVVDEIVKMEKKI------FPKHE-SLARSFDEELK--------KKNSGLLYIQI--HGQVVGHVMYA 69 (155)
Q Consensus 7 ir~~~~~d~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~--~~~~vG~~~~~ 69 (155)
|||++.. |++.+.++.... .|.+. .+..++..... ......+|.++ .|++||++.+.
T Consensus 2 vRpv~~~------Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~ 75 (335)
T TIGR03243 2 VRPVRTS------DLDALMQLARESGIGLTSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIE 75 (335)
T ss_pred cccCccc------cHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeEE
Confidence 7899999 777777776654 34332 22223222211 12334456665 68999999876
Q ss_pred e------------------------------------cCCCeEEEEEEEEccCCCCCChHHHHHHHHH
Q 031671 70 W------------------------------------PTSLSASITKLAVKENYRGQGHGEALLEAAI 101 (155)
Q Consensus 70 ~------------------------------------~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~ 101 (155)
. +-.+..+|..++++|+||+.|.|+.|-+.-.
T Consensus 76 a~vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~LLSr~Rf 143 (335)
T TIGR03243 76 AAVGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLSRSRF 143 (335)
T ss_pred ecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhhHHHHHH
Confidence 0 1124678999999999999999987665443
No 91
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=97.79 E-value=3.7e-05 Score=53.93 Aligned_cols=50 Identities=24% Similarity=0.427 Sum_probs=45.1
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEE
Q 031671 84 KENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 84 ~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~ 136 (155)
...||.+|+|+.|++.++..|++.+..++.+. .-.+++..|+|+||+..|
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~vi---SgiG~ReYy~k~GY~~~g 508 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVI---SGIGVREYYRKLGYELDG 508 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEE---ecccHHHHHHHhCccccC
Confidence 46799999999999999999999998888877 667899999999999876
No 92
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=97.79 E-value=0.00051 Score=38.61 Aligned_cols=65 Identities=17% Similarity=0.141 Sum_probs=48.9
Q ss_pred ceEEEEECCeEEEEEEEEecC-CCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCc
Q 031671 52 GLLYIQIHGQVVGHVMYAWPT-SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRT 121 (155)
Q Consensus 52 ~~~~~~~~~~~vG~~~~~~~~-~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~ 121 (155)
..+-++.++..=|++.+..+. +...+++.++|.+..||+|+|..+++.+.+.. ..+...+.++|+
T Consensus 10 ~~~~~y~~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~-----~~L~Wrsr~~n~ 75 (99)
T cd04265 10 RLHTIYLSEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF-----PKLFWRSRSTNP 75 (99)
T ss_pred CceEEEEeCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC-----CceEEEeCCCCc
Confidence 345555566666777776443 47899999999999999999999999887663 357777776664
No 93
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=97.78 E-value=0.00013 Score=48.67 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=52.5
Q ss_pred ChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEeccccCCCceeEeee
Q 031671 91 GHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGFYSADRPAYERTF 153 (155)
Q Consensus 91 Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~~~~~~m~~ 153 (155)
+-...|+..+.+.|++.|+.+|.+.+... ...+|+++||...+.++.||.. .++++|.+
T Consensus 21 ~~~~~~~~~~~~~a~~~~~~ki~~~~~~~---~~~~~~~~g~~~e~~i~~~f~g-~~~~~~~~ 79 (266)
T TIGR03827 21 NDVEALIPDLDALAKKEGYTKIIAKVPGS---DKPLFEERGYLEEAKIPGYFNG-HDAYFMSK 79 (266)
T ss_pred ccHHHHHHHHHHHHHHcCCcEEEEEccHH---HHHHHHHCCCeEEEecccccCC-CceEEEEE
Confidence 45788999999999999999999997765 5899999999999999999965 78999876
No 94
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=97.74 E-value=0.0028 Score=38.56 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=66.7
Q ss_pred ceeEecCCCCCcchhHHHHHHHHhHhhCCCcH------HHhhhHHHH-Hhcc---CCceEEEEE--CCeEEEEEEEEec-
Q 031671 5 GTVTELQRNSTNWTVVVDEIVKMEKKIFPKHE------SLARSFDEE-LKKK---NSGLLYIQI--HGQVVGHVMYAWP- 71 (155)
Q Consensus 5 ~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~---~~~~~~~~~--~~~~vG~~~~~~~- 71 (155)
+....++.+ ...+++++..+....|-.+. .....+... +..+ ..+.+.+.. ++++|||++..+.
T Consensus 24 F~W~~~dl~---d~~~l~ely~lL~~nYVEDdd~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kLvgfIsaip~~ 100 (162)
T PF01233_consen 24 FEWSTLDLN---DDEELKELYELLNENYVEDDDNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKLVGFISAIPAT 100 (162)
T ss_dssp EEEEE--TT---SHHHHHHHHHHHHHHSSBTTTSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEEEEEEEEEEEE
T ss_pred CEEEecCCC---CHHHHHHHHHHHHhcCccCCcceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEEEEEEccceEE
Confidence 344444433 34477888888888774332 123334443 3332 223455544 7999999987632
Q ss_pred ------CCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccE
Q 031671 72 ------TSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLC 111 (155)
Q Consensus 72 ------~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~ 111 (155)
.-...+|..++|+...|+++++--|++.+...+...|+=.
T Consensus 101 irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~q 146 (162)
T PF01233_consen 101 IRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQ 146 (162)
T ss_dssp EEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--E
T ss_pred EEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCcee
Confidence 1247889999999999999999999999999999987543
No 95
>PHA00432 internal virion protein A
Probab=97.73 E-value=0.00038 Score=41.16 Aligned_cols=84 Identities=10% Similarity=-0.058 Sum_probs=50.0
Q ss_pred CCceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhC--CccEEEEEEecCCchhHhHH
Q 031671 50 NSGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTR--TVLCITLHVDPLRTPAVNLY 127 (155)
Q Consensus 50 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~--g~~~~~~~~~~~n~~a~~~y 127 (155)
+..++....+|++++...- ...+.+.+..-.|..- .+..-+...+.+.++.... .+..+.=.|...|..+++|.
T Consensus 36 s~~~~~~~~~G~~~aI~Gn--~G~~vW~v~T~~v~~~--~~~~~reF~k~~~~~ld~ml~~yp~LwNyV~~~N~~hir~L 111 (137)
T PHA00432 36 DSECVTLSLDGFVLAIGGN--QGDQVWFVTSDQVWRL--TKKEKREFRKLIMEYRDMMLDQYPSLWNYVWVGNKSHIRFL 111 (137)
T ss_pred CceEEEEecCCeEEEEecC--CCCceEEEecHHhhhC--ChhhhHHHHHHHHHHHHHHHHhhhhhheeeecCCHHHHHHH
Confidence 3346666669999887731 1222344433333321 1123333333333333221 36678888999999999999
Q ss_pred HHcCeEEEEE
Q 031671 128 KKFGFQVDTL 137 (155)
Q Consensus 128 ~~~Gf~~~~~ 137 (155)
+.+||+....
T Consensus 112 k~lGf~f~~e 121 (137)
T PHA00432 112 KSIGAVFHNE 121 (137)
T ss_pred HHcCeeeecc
Confidence 9999998775
No 96
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=97.65 E-value=0.00042 Score=43.31 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=38.6
Q ss_pred eEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCC
Q 031671 61 QVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRT 108 (155)
Q Consensus 61 ~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g 108 (155)
.+|||.+=-.......-+..+.|.|.||++|+|+-|++..-+.++..|
T Consensus 66 h~vGyFSKEk~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 66 HIVGYFSKEKESWDNNNLSCILTLPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp EEEEEEEEESS-TT-EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred eeEEEEEEEecccCCeeEeehhhcchhhhcchhhhhhhhHHHHhhccC
Confidence 488998865444556788899999999999999999999999998775
No 97
>PRK14852 hypothetical protein; Provisional
Probab=97.58 E-value=0.0011 Score=51.38 Aligned_cols=140 Identities=12% Similarity=0.066 Sum_probs=89.6
Q ss_pred ceeEecCCCCCcchhHHHHHHHHhHhhCCC-----cHHHhhhHHHHHhccCCceEEEEECCeEEEEEEEEecC-------
Q 031671 5 GTVTELQRNSTNWTVVVDEIVKMEKKIFPK-----HESLARSFDEELKKKNSGLLYIQIHGQVVGHVMYAWPT------- 72 (155)
Q Consensus 5 ~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~------- 72 (155)
..+|.+...+ ++..+..+....|.. +......+...-..+....|++...++++|...+..++
T Consensus 29 ~~~r~Aet~~-----e~~~~~~L~~~~Y~~~Gy~~~~ps~~~~~~~~~lp~t~~~i~k~~~~~l~T~t~~~ds~~~Gl~~ 103 (989)
T PRK14852 29 PAIKIAETPD-----EYTRAFRLVYEEYIRSGYLKPHPSRMYYNVWSILPATSVFIFKSYHDVLCTLTHIPDSGLFGLPM 103 (989)
T ss_pred cceeecCCHH-----HHHHHHHHHHHHHHHcCCCCcCcccccCCccccCCcceEEEeccCCcEEEEEEEecCCcccCcCH
Confidence 3455554443 677777776655422 11111111111122333445555557777777665332
Q ss_pred ---------------CCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHH-HcCeEEEE
Q 031671 73 ---------------SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYK-KFGFQVDT 136 (155)
Q Consensus 73 ---------------~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~-~~Gf~~~~ 136 (155)
...+++..++++|+.|+.-+--.+++.+..++...+++.+.+.|++. -..||+ -+||+..+
T Consensus 104 D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~VnPk---H~~FY~r~l~f~~ig 180 (989)
T PRK14852 104 DTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVNPK---HVKFYTDIFLFKPFG 180 (989)
T ss_pred HHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEECcc---hHHHHHHHhCCcccc
Confidence 23688999999999888877778888888888878999999987665 579998 56999999
Q ss_pred EEeccccCCCceeEee
Q 031671 137 LIQGFYSADRPAYERT 152 (155)
Q Consensus 137 ~~~~~~~~~~~~~~m~ 152 (155)
+.+.|-.=+.+++.|.
T Consensus 181 ~~r~~p~VnaPAvll~ 196 (989)
T PRK14852 181 EVRHYDTVDAPAVALR 196 (989)
T ss_pred ccccCCCCCcchhhee
Confidence 8765544455666554
No 98
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=97.57 E-value=0.003 Score=43.62 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=68.6
Q ss_pred ceEEEE-ECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHc
Q 031671 52 GLLYIQ-IHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKF 130 (155)
Q Consensus 52 ~~~~~~-~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~ 130 (155)
.++++. .+|++||.+.+... .+.........++++++.+-+..|.-.++++|.++|++...+.....+.+..+|-++.
T Consensus 196 ~l~~a~~~~g~~va~~l~~~~-~~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~ 274 (330)
T TIGR03019 196 EVLTVRLGDGVVASAVLSFYF-RDEVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNW 274 (330)
T ss_pred EEEEEEeCCCCEEEEEEEEEe-CCEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcC
Confidence 345566 58899888766533 3333333556789999999999999999999999999988887555566777888889
Q ss_pred CeEEEEEEecccc
Q 031671 131 GFQVDTLIQGFYS 143 (155)
Q Consensus 131 Gf~~~~~~~~~~~ 143 (155)
||++....-.|+.
T Consensus 275 G~~~~~l~~~~~~ 287 (330)
T TIGR03019 275 GFEPQPLHYEYLL 287 (330)
T ss_pred CCeeccceEEEEc
Confidence 9999876655554
No 99
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=97.53 E-value=0.002 Score=37.13 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=36.8
Q ss_pred EEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHc
Q 031671 77 SITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKF 130 (155)
Q Consensus 77 ~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~ 130 (155)
-+.+++|++..|++|+|++|.+++++.-.- ..-.+.++.......+|.+|.
T Consensus 48 cvLDFyVhes~QR~G~Gk~LF~~ML~~e~~---~p~~~a~DrPS~Kll~Fl~Kh 98 (120)
T PF05301_consen 48 CVLDFYVHESRQRRGYGKRLFDHMLQEENV---SPHQLAIDRPSPKLLSFLKKH 98 (120)
T ss_pred eeeeEEEEeceeccCchHHHHHHHHHHcCC---CcccceecCCcHHHHHHHHHh
Confidence 456899999999999999999998776433 233444555566667777653
No 100
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=97.49 E-value=0.0059 Score=35.70 Aligned_cols=102 Identities=11% Similarity=-0.004 Sum_probs=73.3
Q ss_pred CCceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhC-CccEEEEEEecCCchhHhHHH
Q 031671 50 NSGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTR-TVLCITLHVDPLRTPAVNLYK 128 (155)
Q Consensus 50 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n~~a~~~y~ 128 (155)
+..++-+...+.++|...+..-.+...+... .-+|++|| ++...-....++..+. .+..+...+...-.-.+-..+
T Consensus 37 ~~~Y~gVyeg~~l~Gi~~v~~i~~~~vecHa-~y~P~fRG--~a~~~~~~F~kwlL~Ns~f~~vit~vp~kt~~Grvic~ 113 (151)
T PF11039_consen 37 DQLYLGVYEGGQLGGIVYVEEIQPSVVECHA-MYDPGFRG--YALEIGRLFCKWLLENSPFQNVITFVPDKTRYGRVICR 113 (151)
T ss_pred ccEEEEEEeceEEEEEEEEEEEeeeeEEEEe-eeccccch--hHHHHHHHHHHHHhcCCceeEEEEecccccccchhHhh
Confidence 4455666678899999988754444455533 45899998 8888888888888776 566555555555555667778
Q ss_pred HcCeEEEEEEeccccCCCceeEeeec
Q 031671 129 KFGFQVDTLIQGFYSADRPAYERTFL 154 (155)
Q Consensus 129 ~~Gf~~~~~~~~~~~~~~~~~~m~~~ 154 (155)
-+|.+.+|.+.+++....+...++..
T Consensus 114 llg~~RVG~id~~~~g~~~vTlYq~t 139 (151)
T PF11039_consen 114 LLGARRVGHIDDYFKGVDGVTLYQLT 139 (151)
T ss_pred hhCCceeeeHHHHhcCCCceEEEEcc
Confidence 89999999999998765566655543
No 101
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=97.46 E-value=0.007 Score=35.77 Aligned_cols=94 Identities=11% Similarity=0.044 Sum_probs=61.3
Q ss_pred hhHHHHHhccC--CceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEe
Q 031671 40 RSFDEELKKKN--SGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVD 117 (155)
Q Consensus 40 ~~~~~~~~~~~--~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~ 117 (155)
..+...+.+.. ...+-...+|++||.+.+-..+.....+ ..+-+|++...++|+-.+-.-++.|++.|.+.+++.-.
T Consensus 26 ~~y~~fl~~~~~~t~~~~~~~~~kLiav~v~D~l~~glSaV-Y~fyDPd~~~~SlG~~~iL~eI~~a~~~~l~y~YLGY~ 104 (128)
T PF04377_consen 26 EQYRRFLCSSPLGTYHLEYRLDGKLIAVAVVDILPDGLSAV-YTFYDPDYSKRSLGTYSILREIELARELGLPYYYLGYW 104 (128)
T ss_pred HHHHHHHhCCCCCCEEEEEEeCCeEEEEEEeecccchhhhe-eeeeCCCccccCcHHHHHHHHHHHHHHcCCCEEeeCeE
Confidence 34444444332 2233334599999998876444433334 45569999999999999999999999999999888744
Q ss_pred cCCchhHhHHHHcCeEEEE
Q 031671 118 PLRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 118 ~~n~~a~~~y~~~Gf~~~~ 136 (155)
..+ ..++-=|..|.+..
T Consensus 105 I~~--c~kM~YK~~f~P~e 121 (128)
T PF04377_consen 105 IHG--CPKMNYKARFRPHE 121 (128)
T ss_pred eCC--CCcccchhcCCcee
Confidence 332 22333344444443
No 102
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=97.38 E-value=0.0011 Score=49.32 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=29.1
Q ss_pred eEEEEEEEEccCCCCCChHHHHHHHHHHHHHhC
Q 031671 75 SASITKLAVKENYRGQGHGEALLEAAIKKCRTR 107 (155)
Q Consensus 75 ~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~ 107 (155)
.+.|..++|+|+|++.|+|++.++-+.++....
T Consensus 614 GaRIVRIAvhP~y~~MGYGsrAvqLL~~y~eG~ 646 (1011)
T KOG2036|consen 614 GARIVRIAVHPEYQKMGYGSRAVQLLTDYFEGK 646 (1011)
T ss_pred CceEEEEEeccchhccCccHHHHHHHHHHHhcc
Confidence 577999999999999999999999998887543
No 103
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=97.32 E-value=0.0013 Score=43.77 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=40.2
Q ss_pred CCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCC
Q 031671 59 HGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRT 108 (155)
Q Consensus 59 ~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g 108 (155)
+..+|||.+=-..+....-+..+.|.|.||++|+|+-|++..-+..+..|
T Consensus 139 g~h~vGYFSKEK~s~~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 139 GSHIVGYFSKEKVSAEDYNLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred CcEEEEEeceeccccCCCcEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 34588988764433344668899999999999999999999999887765
No 104
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=97.25 E-value=0.00057 Score=46.63 Aligned_cols=48 Identities=27% Similarity=0.444 Sum_probs=41.7
Q ss_pred CCCCCChHHHHHHHHHHHHHhC-CccEEEEEEecCCchhHhHHHHcCeEEEE
Q 031671 86 NYRGQGHGEALLEAAIKKCRTR-TVLCITLHVDPLRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 86 ~~r~~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~ 136 (155)
.||.||+|+.|++.++..|++. |..++.+. ...+.+..|.|+||+..|
T Consensus 498 KfQHQG~GtLLmeEAERIAr~EHgS~KiavI---SGVGtR~YY~klGY~LdG 546 (554)
T KOG2535|consen 498 KFQHQGFGTLLMEEAERIAREEHGSGKIAVI---SGVGTRNYYRKLGYELDG 546 (554)
T ss_pred hhhhcchhhHHHHHHHHHHHHhcCCCceEEE---eccchHHHHHhhCeeecC
Confidence 4999999999999999999976 77777776 556788999999999876
No 105
>PHA01733 hypothetical protein
Probab=97.17 E-value=0.00054 Score=41.17 Aligned_cols=86 Identities=16% Similarity=0.081 Sum_probs=55.8
Q ss_pred CCceEEEEECCeEEEEEEEEec-CCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHh-CCccEEEEEEecCCchhHhHH
Q 031671 50 NSGLLYIQIHGQVVGHVMYAWP-TSLSASITKLAVKENYRGQGHGEALLEAAIKKCRT-RTVLCITLHVDPLRTPAVNLY 127 (155)
Q Consensus 50 ~~~~~~~~~~~~~vG~~~~~~~-~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~-~g~~~~~~~~~~~n~~a~~~y 127 (155)
....+....+|+++|......+ .++.+..+.+.++.=.+ +-+..+..+.....+ ..+..+.=.|...|..+++|.
T Consensus 46 ~~~v~~~~~nG~l~aI~Gv~~d~~~~vG~pWlV~T~~v~k---~~~~f~re~r~~l~e~~~Yp~LwNyV~~~N~~hir~L 122 (153)
T PHA01733 46 ENVVAFVAPDGSLAGVAGLVEDMGNRVGEIWMVCTPAIEK---NPIALLRGAKWWLPKSRNYDLLWNIVDKRNLVHRKLL 122 (153)
T ss_pred ccceEEEecCCcEEEEecccccccCCCCceeEEecHHhHh---CCHHHHHHHHHHHHHhccccHHHHhHhcccHHHHHHH
Confidence 3333555558999999988742 23444454444332222 444555555555553 367777777999999999999
Q ss_pred HHcCeEEEEEE
Q 031671 128 KKFGFQVDTLI 138 (155)
Q Consensus 128 ~~~Gf~~~~~~ 138 (155)
+.+||+.....
T Consensus 123 k~lGF~f~~~~ 133 (153)
T PHA01733 123 RKLGFKGLRYV 133 (153)
T ss_pred HHcCceeeccc
Confidence 99999976643
No 106
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=97.10 E-value=0.036 Score=36.51 Aligned_cols=79 Identities=9% Similarity=-0.026 Sum_probs=56.9
Q ss_pred EEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEE
Q 031671 56 IQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVD 135 (155)
Q Consensus 56 ~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~ 135 (155)
...+|++||.+.+-..+...-.+ ..+-||++..+++|+-.+-.-++.|++.|...+++.-...+ ..++-=|.-|.+.
T Consensus 149 y~~~g~LiaVav~D~l~d~lSAV-Y~FyDPd~~~~SLG~~~iL~qI~~ak~~gl~y~YLGY~I~~--c~kM~YK~~f~P~ 225 (240)
T PRK01305 149 FRGDGKLVAVAVTDVLDDGLSAV-YTFYDPDEEHRSLGTFAILWQIELAKRLGLPYVYLGYWIKG--SRKMNYKARFRPL 225 (240)
T ss_pred EEeCCeEEEEEEEeccCCceeeE-EEeeCCCccccCCHHHHHHHHHHHHHHcCCCeEeeeEEECC--CCcccccccCCcc
Confidence 33599999999886444444444 56779999999999999999999999999999988755433 2233334445544
Q ss_pred EE
Q 031671 136 TL 137 (155)
Q Consensus 136 ~~ 137 (155)
..
T Consensus 226 E~ 227 (240)
T PRK01305 226 EI 227 (240)
T ss_pred ee
Confidence 43
No 107
>PTZ00064 histone acetyltransferase; Provisional
Probab=97.04 E-value=0.0019 Score=46.12 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=39.8
Q ss_pred CeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCC
Q 031671 60 GQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRT 108 (155)
Q Consensus 60 ~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g 108 (155)
-.+|||.+=-.......-+.++.|.|.||++|+|+.|++...+..+..|
T Consensus 369 ~HiVGYFSKEK~S~~~nNLACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 369 CHIVGYFSKEKVSLLHYNLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred cEEEEEecccccCcccCceEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 4688988754444445578899999999999999999999999887765
No 108
>PLN03239 histone acetyltransferase; Provisional
Probab=97.02 E-value=0.0027 Score=43.48 Aligned_cols=49 Identities=10% Similarity=0.056 Sum_probs=39.0
Q ss_pred CeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCC
Q 031671 60 GQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRT 108 (155)
Q Consensus 60 ~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g 108 (155)
-.+|||.+=-..+....-+..+.|.|.||++|+|+-|++..-+..+..|
T Consensus 198 ~h~vGYFSKEK~s~~~~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 198 FHPVGYYSKEKYSDVGYNLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred eEEEEEeeecccCCCCCceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 4578887654333344568899999999999999999999998887664
No 109
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=96.89 E-value=0.038 Score=37.69 Aligned_cols=67 Identities=13% Similarity=0.022 Sum_probs=46.7
Q ss_pred ccCCceEEEEE-CCeEEEEEEEEecC-CCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEE
Q 031671 48 KKNSGLLYIQI-HGQVVGHVMYAWPT-SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLH 115 (155)
Q Consensus 48 ~~~~~~~~~~~-~~~~vG~~~~~~~~-~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~ 115 (155)
..+...+++.. +|+++|++.+.+.. .+.+.+.-.--+|+ -=+|+-..|+..+++.+++.|++.+.+.
T Consensus 177 ~~~~~~~~~~~~dgki~af~~~~~~~~~~~~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~~~g~~~lnLg 245 (299)
T PF09924_consen 177 ELGLRGFVARVADGKIVAFAIGSPLGGRDGWSIDFEKADPD-APKGIYEFLNVEFAEHLKAEGVEYLNLG 245 (299)
T ss_dssp HHT-EEEEEEE-TTEEEEEEEEEEEE-TTEEEEEEEEE-TT--STTHHHHHHHHHHHHS--TT--EEE--
T ss_pred hcCceEEEEEECCCcEEEEEEEEEccCCccEEEEEEecCCC-CCCcHHHHHHHHHHHhhhhCCceEEEcc
Confidence 34667788888 99999999998655 56666655566666 4569999999999999998899988754
No 110
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=96.85 E-value=0.0085 Score=39.89 Aligned_cols=86 Identities=19% Similarity=0.297 Sum_probs=53.9
Q ss_pred ceeEecCCCCCcchhHHHHHHHHhHhh------CCCcHH-HhhhHHHHH-------hcc-CCceEEEEE--CCeEEEEEE
Q 031671 5 GTVTELQRNSTNWTVVVDEIVKMEKKI------FPKHES-LARSFDEEL-------KKK-NSGLLYIQI--HGQVVGHVM 67 (155)
Q Consensus 5 ~~ir~~~~~d~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~-------~~~-~~~~~~~~~--~~~~vG~~~ 67 (155)
+.+||++.. |++.+.++...+ .|.++. +...+.... ... ...+++.++ .|+++|...
T Consensus 2 lvvRP~~~a------Dl~al~~LA~~sg~G~TsLP~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~sa 75 (336)
T COG3138 2 LVVRPVERA------DLEALMELAVKTGVGLTSLPADEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGISA 75 (336)
T ss_pred ccccccccc------CHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeEEE
Confidence 678999999 788888887654 344332 222222221 112 334556665 789999887
Q ss_pred EEe------------------------------------cCCCeEEEEEEEEccCCCCCChHHHH
Q 031671 68 YAW------------------------------------PTSLSASITKLAVKENYRGQGHGEAL 96 (155)
Q Consensus 68 ~~~------------------------------------~~~~~~~i~~~~v~~~~r~~Gig~~l 96 (155)
+.. +-.+..++..++++|++|.-+.|+.|
T Consensus 76 I~a~vGl~~PfYsyRv~tlvhaS~~L~v~~~i~~L~L~Nd~TG~SEl~sLFl~pd~Rkg~nG~Ll 140 (336)
T COG3138 76 IEAAVGLNDPFYSYRVGTLVHASPELNVYNEIPTLFLSNDLTGNSELCTLFLDPDWRKGGNGRLL 140 (336)
T ss_pred EEEeeccCCccceeeeeeeeecCccccccccceeEEEeccCcCchhhhheeecHHHhcccchhhh
Confidence 650 01234668889999999977777644
No 111
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=96.85 E-value=0.0048 Score=34.92 Aligned_cols=49 Identities=29% Similarity=0.323 Sum_probs=35.9
Q ss_pred cCCceEEEEECCe-EEEEEEEEec-----------------------CCCeEEEEEEEEccCCCCCChHHHHH
Q 031671 49 KNSGLLYIQIHGQ-VVGHVMYAWP-----------------------TSLSASITKLAVKENYRGQGHGEALL 97 (155)
Q Consensus 49 ~~~~~~~~~~~~~-~vG~~~~~~~-----------------------~~~~~~i~~~~v~~~~r~~Gig~~ll 97 (155)
.....+++..++. +||++.+... ....++++.++|+|+||+......|+
T Consensus 28 ~~~~h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 28 EHSVHLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CCccEEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 4455666666555 9999987621 12578999999999999988877664
No 112
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=96.84 E-value=0.0019 Score=45.78 Aligned_cols=50 Identities=12% Similarity=0.146 Sum_probs=40.0
Q ss_pred CCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCC
Q 031671 59 HGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRT 108 (155)
Q Consensus 59 ~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g 108 (155)
+-.+|||.+=-..+....-+..+.|.|.||++|+|+.|++...+..+..|
T Consensus 290 g~h~vGyFSKEk~s~~~~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~eg 339 (450)
T PLN00104 290 GCHMVGYFSKEKHSEEDYNLACILTLPPYQRKGYGKFLIAFSYELSKREG 339 (450)
T ss_pred CcEEEEEecccccCcCCCceEEEEecchhhhcchhheehhheehhhhccC
Confidence 34789998764444444578899999999999999999999988887664
No 113
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=96.61 E-value=0.049 Score=31.17 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=49.4
Q ss_pred ceEEEEECCeEEEEEEEEecC------CCeEEEEEEEEccCCCC-CChHHHHHHHHHHHHHhCCccE-EEEEEecCCchh
Q 031671 52 GLLYIQIHGQVVGHVMYAWPT------SLSASITKLAVKENYRG-QGHGEALLEAAIKKCRTRTVLC-ITLHVDPLRTPA 123 (155)
Q Consensus 52 ~~~~~~~~~~~vG~~~~~~~~------~~~~~i~~~~v~~~~r~-~Gig~~ll~~~~~~~~~~g~~~-~~~~~~~~n~~a 123 (155)
..+-++.++..-|.+.++++. ....++..++|.+.-|| .|++..+.+.+.+. ... +...+.++|+ .
T Consensus 10 ~~~~~y~~~~y~~~AIvt~e~~~~~~~~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~~-----fp~~L~Wrsr~~n~-~ 83 (108)
T cd04266 10 SLATVIIAGDYEGAAILTWEGPDGSTPEKIAYLDKFAVLPKAQGSDGIADILFNAMLDG-----FPNELIWRSRKDNP-V 83 (108)
T ss_pred CccEEEEeCCCcEEEEEecCCCCccCCCCceEEEEEEEccccccccchHHHHHHHHHHc-----CCCceEEEeCCCCc-c
Confidence 344445566666777776542 46789999999999997 89999999988762 333 7777776665 3
Q ss_pred HhHH
Q 031671 124 VNLY 127 (155)
Q Consensus 124 ~~~y 127 (155)
.++|
T Consensus 84 n~Wy 87 (108)
T cd04266 84 NKWY 87 (108)
T ss_pred cceE
Confidence 3554
No 114
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=96.11 E-value=0.013 Score=41.01 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=34.6
Q ss_pred EEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhC
Q 031671 62 VVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTR 107 (155)
Q Consensus 62 ~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~ 107 (155)
.|||.+=--......-+..+.|.|.||++|+|+.|++..-+..+..
T Consensus 247 ~VGYFSKEK~s~~~yNlaCILtLPpyQRkGYGklLIdFSYeLSr~E 292 (396)
T KOG2747|consen 247 CVGYFSKEKESSENYNLACILTLPPYQRKGYGKLLIDFSYELSRRE 292 (396)
T ss_pred eeeeeccccccccccceeeeeecChhhhcccchhhhhhhhhhhccc
Confidence 4555543323334556889999999999999999999998887654
No 115
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.034 Score=40.88 Aligned_cols=57 Identities=9% Similarity=0.000 Sum_probs=49.1
Q ss_pred EEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEE
Q 031671 82 AVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 82 ~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~ 138 (155)
+++.+.---|+.+.+++-++...+.+|.....+.|..++..-++||.++||...+..
T Consensus 823 ~~~~~a~D~~~~k~m~~vll~tL~aNGsrGaf~~V~~dD~~~~~fys~lG~~d~~~~ 879 (891)
T KOG3698|consen 823 YFGMDASDAHPMKKMIQVLLVTLAANGSRGAFLTVAIDDIERQKFYSELGLTDLGLS 879 (891)
T ss_pred ccccccccchHHHHHHHHHHHHHHhcCCcceeEEechhHHHHHHHHHHhchHHHhHh
Confidence 444455567999999999999999999999999999999999999999999876543
No 116
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=95.96 E-value=0.11 Score=35.91 Aligned_cols=112 Identities=10% Similarity=0.137 Sum_probs=67.5
Q ss_pred chhHHHHHHHHhHhhCCCcHH------HhhhHHH-HHhcc---CCceEEEEE--CCeEEEEEEEEec-------CCCeEE
Q 031671 17 WTVVVDEIVKMEKKIFPKHES------LARSFDE-ELKKK---NSGLLYIQI--HGQVVGHVMYAWP-------TSLSAS 77 (155)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~---~~~~~~~~~--~~~~vG~~~~~~~-------~~~~~~ 77 (155)
...+++++..+..+.+-.+.. ....+.. .+..+ ..+++.+.. +.++|||++..+. ....++
T Consensus 90 ~~~~l~el~~lL~enyVEd~~~m~rf~Ys~eFl~Wal~~pg~~~~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~ve 169 (421)
T KOG2779|consen 90 DFKDLEELYNLLNENYVEDDDSMFRFDYSPEFLKWALQPPGWKKEWHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVE 169 (421)
T ss_pred cHhHHHHHHhhcccCCCCccccchhhhccHHHHHhhhcCCCCccceEEEEEEecCCceEEEEeccccEEEEccceeeeee
Confidence 334566666666655532211 1122233 33322 233444443 6799999976531 124789
Q ss_pred EEEEEEccCCCCCChHHHHHHHHHHHHHhCCcc---EEEEEEecCCchhHhHHH
Q 031671 78 ITKLAVKENYRGQGHGEALLEAAIKKCRTRTVL---CITLHVDPLRTPAVNLYK 128 (155)
Q Consensus 78 i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~---~~~~~~~~~n~~a~~~y~ 128 (155)
|..++||...|+++++--|++.+-..+.-.|+= .-...+.+.+....+.|.
T Consensus 170 INFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTaGvvLp~PVstcRY~H 223 (421)
T KOG2779|consen 170 INFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTAGVVLPKPVSTCRYWH 223 (421)
T ss_pred EEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhcceeeccccchhhhhh
Confidence 999999999999999999999998888765431 111224445665555553
No 117
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=95.62 E-value=0.29 Score=30.61 Aligned_cols=107 Identities=16% Similarity=0.220 Sum_probs=66.4
Q ss_pred hHHHHHHHHhHhhCCCcHHHhhhHHHHHhccCCceEEEEECCeEEEEEEEEe----cCCCeEEEEEEEEccCCCCCChHH
Q 031671 19 VVVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIQIHGQVVGHVMYAW----PTSLSASITKLAVKENYRGQGHGE 94 (155)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~----~~~~~~~i~~~~v~~~~r~~Gig~ 94 (155)
.+.+.+..+....|...... ..+.+.+... .+.++.++..-|.+.+++ ..+...++.-++|.+..||.|++.
T Consensus 32 ~d~~kL~~ll~~sf~~~~~v-~~yl~~l~~~---~~~iy~d~~y~~~AIVt~e~~~~~~~v~yLdKFav~~~~~g~gv~D 107 (170)
T PF04768_consen 32 VDLDKLRALLERSFGGKLDV-DHYLDRLNNR---LFKIYVDEDYEGAAIVTPEGPDSNGPVPYLDKFAVSKSAQGSGVAD 107 (170)
T ss_dssp S-HHHHHHHHHHHSTSSSBH-TTHHHHHHTS----SEEEEETTSSEEEEEEEE-SCTCTSEEEEEEEEE-HHHHHTTHHH
T ss_pred CCHHHHHHHHHhcccccccH-HHHHHHhhcc---ceEEEEeCCceEEEEEEecCCCCCCCCeEEEEEEecchhhhcCHHH
Confidence 47888888888888433333 3444444332 222333455555555543 234689999999999999999999
Q ss_pred HHHHHHHHHHHhCCccEEEEEEecCCchhHhHH--HHcCeEEE
Q 031671 95 ALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLY--KKFGFQVD 135 (155)
Q Consensus 95 ~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y--~~~Gf~~~ 135 (155)
.+.+.+.+.. ..+...+.++| +..++| +..|+-..
T Consensus 108 ~vf~~i~~d~-----p~L~Wrsr~~n-~~~~Wyf~rs~G~~~~ 144 (170)
T PF04768_consen 108 NVFNAIRKDF-----PKLFWRSREDN-PNNKWYFERSDGSFKR 144 (170)
T ss_dssp HHHHHHHHH------SSEEEEEETT--TTHHHHHHH-SEEEEE
T ss_pred HHHHHHHHhc-----cceEEEecCCC-CcccEEEEeeEEEEEC
Confidence 9999885543 33777777766 466776 34476653
No 118
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=95.61 E-value=0.42 Score=32.50 Aligned_cols=86 Identities=16% Similarity=0.213 Sum_probs=65.6
Q ss_pred CCceEEEEECCeEEEEEEEEecC------CCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhC---------C-ccEEE
Q 031671 50 NSGLLYIQIHGQVVGHVMYAWPT------SLSASITKLAVKENYRGQGHGEALLEAAIKKCRTR---------T-VLCIT 113 (155)
Q Consensus 50 ~~~~~~~~~~~~~vG~~~~~~~~------~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~---------g-~~~~~ 113 (155)
....++++ -+.+|+.+++.... .-...|.++.|..=|..-|+=..|+++++-++++. | --.+.
T Consensus 169 ~NT~IIvY-RetPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll 247 (304)
T PF11124_consen 169 KNTHIIVY-RETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLL 247 (304)
T ss_pred CcceEEEE-cCCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEE
Confidence 34444544 68999999887422 23678889999999999999999999997766651 1 12455
Q ss_pred EEEecCCchhHhHHHHcCeEEEE
Q 031671 114 LHVDPLRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 114 ~~~~~~n~~a~~~y~~~Gf~~~~ 136 (155)
+.+..-+....+..+++||+...
T Consensus 248 ~d~YSFD~~~~k~L~~~gF~~i~ 270 (304)
T PF11124_consen 248 VDVYSFDKDMKKTLKKKGFKKIS 270 (304)
T ss_pred EEeeeccHHHHHHHHHCCCeeee
Confidence 56777788999999999999887
No 119
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=95.24 E-value=0.092 Score=36.46 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=40.1
Q ss_pred EEEEEEEEe----cCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCc
Q 031671 62 VVGHVMYAW----PTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRT 121 (155)
Q Consensus 62 ~vG~~~~~~----~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~ 121 (155)
++|+..+.. ...-...|..+.+.|.||++|+|+.|++.+....... -..+.+++...++
T Consensus 200 ~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~-p~v~DiTVEdPse 262 (403)
T KOG2696|consen 200 YVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKGLGSQLYEAIARDYLEE-PTVLDITVEDPSE 262 (403)
T ss_pred eeeeEEEeehhhhhhhhhhhhheeEEeccccCCchHHHHHHHHHHhhccC-CceeEEEecCchH
Confidence 455555442 2234677889999999999999999999998555544 2345555554443
No 120
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=95.12 E-value=0.25 Score=31.13 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=47.4
Q ss_pred eEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEE
Q 031671 75 SASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 75 ~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~ 136 (155)
..+|+.++.. +.|.++.|+..+.......|++.+..+ .+...++++.|+|..+..
T Consensus 87 IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g~~w~vfT---aT~~lr~~~~rlgl~~~~ 141 (179)
T PF12261_consen 87 IVEVGNLASF----SPGAARLLFAALAQLLAQQGFEWVVFT---ATRQLRNLFRRLGLPPTV 141 (179)
T ss_pred eeEeechhhc----CcccHHHHHHHHHHHHHHCCCCEEEEe---CCHHHHHHHHHcCCCcee
Confidence 5777777665 589999999999999999999988777 778899999999998764
No 121
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=95.11 E-value=0.29 Score=27.56 Aligned_cols=70 Identities=11% Similarity=0.143 Sum_probs=51.3
Q ss_pred ceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHH
Q 031671 52 GLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLY 127 (155)
Q Consensus 52 ~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y 127 (155)
..+-++.++..-|.+.+..+.+...++..+.|.+.-++.|++..+.+.+.+. ...+...+.++|+ ..++|
T Consensus 10 ~~~~~y~de~y~~~AIvt~~~~~v~~LdkFav~~~~~~~gv~D~vf~~i~~d-----~~~L~Wrsr~~n~-~n~Wy 79 (98)
T cd03173 10 GKFASYADEPLEGVAIVTYEGNSIPYLDKFAVSDHLWLNNVTDNIFNLIRKD-----FPSLLWRVRENDA-NLKWY 79 (98)
T ss_pred CceEEEEcCCccEEEEEecCCCCCEEEEEEEEcccccccCHHHHHHHHHHhh-----CCeeEEEeCCCCC-ccceE
Confidence 3444555666777777766656789999999999999999999999887765 2367777776664 33444
No 122
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=95.01 E-value=0.48 Score=31.24 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=27.8
Q ss_pred CeEEEEEEEEccCCCCCChHHHHHHHHHHHHH
Q 031671 74 LSASITKLAVKENYRGQGHGEALLEAAIKKCR 105 (155)
Q Consensus 74 ~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~ 105 (155)
-.+.|..+.|.+--|++|+++.|+..+...-.
T Consensus 182 ~~~GIsRIWV~s~~Rr~gIAs~lldva~~~~~ 213 (257)
T KOG3014|consen 182 AICGISRIWVSSLRRRKGIASLLLDVARCNFV 213 (257)
T ss_pred cEeeeEEEEeehhhhhhhhHHHHHHHHHHhhh
Confidence 36889999999999999999999998866554
No 123
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=94.95 E-value=0.089 Score=32.56 Aligned_cols=126 Identities=13% Similarity=-0.011 Sum_probs=75.1
Q ss_pred CCCCceeEecCCCCCcchhHHHHHHHHhHhhCCCcHHHhh-hHH---HHHhccCCceEEEEECCeEEEEEEEE-------
Q 031671 1 MGSNGTVTELQRNSTNWTVVVDEIVKMEKKIFPKHESLAR-SFD---EELKKKNSGLLYIQIHGQVVGHVMYA------- 69 (155)
Q Consensus 1 M~~~~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~vG~~~~~------- 69 (155)
|.+.++.+..=.++ ....|-.++.++....|+..-.+.. -|+ +.....+..-.+.++...+++-+.+.
T Consensus 1 m~~~v~W~l~WEne-L~l~dH~eLa~ffrktYgptg~fnakpFeg~RSWAGARPElRaIgyD~~GvaAH~G~LRRFIkVG 79 (196)
T PF02474_consen 1 MRSQVRWRLCWENE-LQLADHVELAEFFRKTYGPTGAFNAKPFEGGRSWAGARPELRAIGYDSRGVAAHMGLLRRFIKVG 79 (196)
T ss_pred CCCCceEEEEeccc-cchhhhHHHHHHHHHhcCCCCcccCccCCcccccccCCceeEEEeecCchHHHHHHHHHHHhccC
Confidence 55555555443332 2334667778888888765422211 111 11112233345555555454433322
Q ss_pred ecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcC
Q 031671 70 WPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFG 131 (155)
Q Consensus 70 ~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~G 131 (155)
..+--.++++...|.|+.+|.||+..+ ..+....++.|+.-.+.+|.. +..+.+++++
T Consensus 80 ~vDlLVaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~---al~~Hv~R~~ 137 (196)
T PF02474_consen 80 EVDLLVAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRH---ALRNHVERLC 137 (196)
T ss_pred CcceeEEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchH---HHHHHHHHHh
Confidence 112237899999999999999999976 688888888898877777654 4566666654
No 124
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.92 E-value=0.034 Score=39.62 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=43.5
Q ss_pred eEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEE-----EecCCchhHhHHHHcCeEEEE
Q 031671 75 SASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLH-----VDPLRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 75 ~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~-----~~~~n~~a~~~y~~~Gf~~~~ 136 (155)
.+.|..+.|||+||+.|+|..-+..+.++..++-+....-. +-..-..-..||++.||+-.-
T Consensus 241 aariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe~~gfkylw 307 (593)
T COG2401 241 AARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFEKVGFKYLW 307 (593)
T ss_pred hhheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhhhhceeeee
Confidence 46799999999999999999999999999988743322111 000001113689999998653
No 125
>PRK04531 acetylglutamate kinase; Provisional
Probab=94.76 E-value=0.46 Score=33.97 Aligned_cols=101 Identities=16% Similarity=0.184 Sum_probs=65.8
Q ss_pred HHHHHHHHhHhhCCCcHHHhhhHHHHHhccCCceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHH
Q 031671 20 VVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEA 99 (155)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~ 99 (155)
|.+.+..+....|..... ..++. ....+-++.++..-|.+.++++ +...++..++|.+.-|+.|++..+.+.
T Consensus 263 d~~~l~~ll~~sf~r~~~-~~y~~------~~~~~~~y~~~~y~~~Aiv~~~-~~~~~Ldkf~v~~~~~~~~v~d~vf~~ 334 (398)
T PRK04531 263 DLERLNLLIESSFGRTLK-PDYFD------TTQLLRAYVSENYRAAAILTET-GGGPYLDKFAVLDDARGEGLGRAVWNV 334 (398)
T ss_pred CHHHHHHHHhhhcccchH-HHHhc------cCCceEEEEeCCCcEEEEEecC-CCceEeEEEEEccchhhcChHHHHHHH
Confidence 566666666666654322 22222 1344555556777677777643 568999999999999999999999998
Q ss_pred HHHHHHhCCccEEEEEEecCCchhHhHH--HHcCeEE
Q 031671 100 AIKKCRTRTVLCITLHVDPLRTPAVNLY--KKFGFQV 134 (155)
Q Consensus 100 ~~~~~~~~g~~~~~~~~~~~n~~a~~~y--~~~Gf~~ 134 (155)
+.+.. ..+.+.+.++|+ ..++| +.-|+-.
T Consensus 335 ~~~~~-----~~L~Wrsr~~n~-~~~Wyf~~s~G~~~ 365 (398)
T PRK04531 335 MREET-----PQLFWRSRHNNT-INKFYYAESDGCIK 365 (398)
T ss_pred HHhhC-----CceEEEcCCCCC-ccceeeecccceEe
Confidence 87664 357777776665 33554 3345544
No 126
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.097 Score=33.93 Aligned_cols=53 Identities=21% Similarity=0.198 Sum_probs=36.0
Q ss_pred CeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHH
Q 031671 74 LSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKK 129 (155)
Q Consensus 74 ~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~ 129 (155)
...-|.+++|++.-|+.|.|..|++++++.- +...=.+.++.......+|.+|
T Consensus 107 e~lcILDFyVheS~QR~G~G~~lfdyMl~kE---~vephQ~a~DrPS~kLl~Fm~k 159 (264)
T KOG4601|consen 107 EALCILDFYVHESEQRSGNGFKLFDYMLKKE---NVEPHQCAFDRPSAKLLQFMEK 159 (264)
T ss_pred CCceEEEEEeehhhhhcCchHHHHHHHHHhc---CCCchheeccChHHHHHHHHHH
Confidence 3556779999999999999999999887642 3332233444444456666643
No 127
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=93.67 E-value=0.018 Score=39.47 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=35.0
Q ss_pred eEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHH
Q 031671 61 QVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCR 105 (155)
Q Consensus 61 ~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~ 105 (155)
++|||.+=-..+.+..-+..+.+.|.||++|+|+.|+++.-...+
T Consensus 248 h~vGyFSKEK~S~~~yNLaCILtLP~yQRrGYG~lLIdFSY~Ls~ 292 (395)
T COG5027 248 HLVGYFSKEKESEQDYNLACILTLPPYQRRGYGKLLIDFSYLLSQ 292 (395)
T ss_pred eeeeeechhhcccccCceEEEEecChhHhcccceEeeeeeeeccc
Confidence 377887654445556678899999999999999999988765555
No 128
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=93.32 E-value=1.4 Score=35.86 Aligned_cols=59 Identities=15% Similarity=0.114 Sum_probs=49.1
Q ss_pred CCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 59 HGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 59 ~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
+|+++|++.+.+...+.+.++-+.-+|+- -+|+...|+..++.++++.|++.+.+...+
T Consensus 429 ~G~i~af~s~~p~~~~g~slDLMRr~pda-pnGvmE~L~~~l~~~~k~~G~~~~sLg~AP 487 (1094)
T PRK02983 429 DGQVVALLSFVPWGRRGLSLDLMRRSPDA-PNGVIELMVAELALEAESLGITRISLNFAV 487 (1094)
T ss_pred CCeEEEEEEEeeeCCCCEEEEecccCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEechhh
Confidence 78999999998644556777666667774 689999999999999999999999887544
No 129
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=92.05 E-value=0.72 Score=25.20 Aligned_cols=28 Identities=11% Similarity=-0.006 Sum_probs=23.1
Q ss_pred ccEEEEEEecCCchhHhHHHHcCeEEEE
Q 031671 109 VLCITLHVDPLRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 109 ~~~~~~~~~~~n~~a~~~y~~~Gf~~~~ 136 (155)
+..++=.|...|..+++|.+.+|++...
T Consensus 56 Y~~l~N~V~~~N~~HIRfLk~lGA~f~~ 83 (86)
T PF11090_consen 56 YPVLWNFVWVGNKSHIRFLKSLGAVFHN 83 (86)
T ss_pred hhheeEEEEeCCHHHHHHHHhcCcEEcc
Confidence 4557777888999999999999998543
No 130
>PHA02769 hypothetical protein; Provisional
Probab=92.01 E-value=0.21 Score=28.65 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHH---HhCCccEEEEEEecCCchhHhHHHHcCeEEEEEE
Q 031671 93 GEALLEAAIKKC---RTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 93 g~~ll~~~~~~~---~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~ 138 (155)
|..|++++...+ ++.|+..++..-.+ ..+.++|.|.||+.++..
T Consensus 94 gd~lvnfl~~l~~k~~~dg~evlwtlgfp--dhsnaly~kagfk~vg~t 140 (154)
T PHA02769 94 GDHLVNFLNDLAEKLKKDGFEVLWTLGFP--DHSNALYKKAGFKLVGQT 140 (154)
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEEEecCC--CcchhHHhhhhhhHhccc
Confidence 556666665544 45588766544333 347899999999998854
No 131
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=91.88 E-value=0.8 Score=32.89 Aligned_cols=100 Identities=13% Similarity=0.219 Sum_probs=52.1
Q ss_pred ceEEEEEC-CeEEEEEEEEecCCC-eEEEEEEEEcc--CCCCCChHHHHHHHHHHHHHhCCccEEEEEE-----------
Q 031671 52 GLLYIQIH-GQVVGHVMYAWPTSL-SASITKLAVKE--NYRGQGHGEALLEAAIKKCRTRTVLCITLHV----------- 116 (155)
Q Consensus 52 ~~~~~~~~-~~~vG~~~~~~~~~~-~~~i~~~~v~~--~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~----------- 116 (155)
..+.+..+ ++++|.+.+...... ...+..+-=-| +|...-+-..+++.+.+++++.++-.+.+..
T Consensus 36 ~~vgv~~d~~~v~aa~ll~~~~~~~g~~~~yiprGPv~d~~d~ell~~f~~~Lk~~akk~~a~~lridP~~~~~~~~~~g 115 (406)
T PF02388_consen 36 ERVGVKDDGGEVAAAALLLRKKPFKGFKYAYIPRGPVMDYSDEELLEFFLEELKKYAKKKRALFLRIDPNVIYQERDEDG 115 (406)
T ss_dssp EEEEEE-TTS-EEEEEEEEEEECTTTCEEEEETT--EC-TT-HHHHHHHHHHHHHHHCTTTEEEEEE--S-EEECE-TTS
T ss_pred EEEEEEeCCCeEEEEEEEEEeccCCceeEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEeCchhhhhccccc
Confidence 34444444 677776655432111 11122222224 6778888889999999999987655444331
Q ss_pred ----ecCCchhHhHHHHcCeEEEEEEeccccCCCceeEe
Q 031671 117 ----DPLRTPAVNLYKKFGFQVDTLIQGFYSADRPAYER 151 (155)
Q Consensus 117 ----~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~~~~~~m 151 (155)
...|...+..++++||...+....+-....+...|
T Consensus 116 ~~~~~~~~~~~~~~l~~~G~~~~g~~~~~~~~~qpr~~~ 154 (406)
T PF02388_consen 116 EPIEGEENDELIENLKALGFRHQGFTKGYDDTIQPRWTY 154 (406)
T ss_dssp -EEEE-S-THHHHHHHHTT-CCTS-SSSTTSSSS-SEEE
T ss_pred ccccCcchHHHHHHHHhcCceecCcccCCCcccCccEEE
Confidence 23456678999999999887665543323333333
No 132
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=91.81 E-value=1.8 Score=26.12 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=53.0
Q ss_pred CCceEEEE-ECCeEEEEEEEE--e-cCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHh
Q 031671 50 NSGLLYIQ-IHGQVVGHVMYA--W-PTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVN 125 (155)
Q Consensus 50 ~~~~~~~~-~~~~~vG~~~~~--~-~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~ 125 (155)
..+.|++. .++++.|++... | .+.+...+..+.+.|. +......-|+.++.+.+-..++-.+.+...+ ....
T Consensus 54 sgHSFvA~~e~~~~~GfvLAQaVWQGdrptVlV~ri~~~~~-~~~~~~~GLLrAvvKSAYDa~VYEv~l~l~p---~l~~ 129 (161)
T PF09390_consen 54 SGHSFVAEDEGGELQGFVLAQAVWQGDRPTVLVRRILLAPG-EPEEVYEGLLRAVVKSAYDAGVYEVHLHLDP---ELEA 129 (161)
T ss_dssp CS--EEEE-ETTEEEEEEEEEEEE-SSSEEEEEEEE---EE-SSHHHHHHHHHHHHHHHHHTT-SEEEE---T---HHHH
T ss_pred cCCcEEEEccCCceeeeeehhHHhcCCCceEEEEEeecCCC-CcHHHHHHHHHHHHHhhhccceEEEEeeCCH---HHHH
Confidence 45667777 689999999765 3 3344666666666654 5568888999999999999999888888666 5566
Q ss_pred HHHHcCeEEEE
Q 031671 126 LYKKFGFQVDT 136 (155)
Q Consensus 126 ~y~~~Gf~~~~ 136 (155)
-...-||...+
T Consensus 130 A~~a~~~~~~~ 140 (161)
T PF09390_consen 130 AARAEGFRLGG 140 (161)
T ss_dssp HHHHTT----S
T ss_pred HHhhcccccCC
Confidence 67778887655
No 133
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=91.10 E-value=4.2 Score=28.97 Aligned_cols=128 Identities=13% Similarity=0.032 Sum_probs=74.8
Q ss_pred CceeEecCCCCCcchhHHHHHHHHhHhhCCC---cHHHhhhHHHHHh-ccCCc--eEEEEECCeEEEEEEEEecCCCeEE
Q 031671 4 NGTVTELQRNSTNWTVVVDEIVKMEKKIFPK---HESLARSFDEELK-KKNSG--LLYIQIHGQVVGHVMYAWPTSLSAS 77 (155)
Q Consensus 4 ~~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~vG~~~~~~~~~~~~~ 77 (155)
.++++.++.++. ...+++.+..++...+.. ...+...+...+. .-+.. ++++..+|++||+..+.. .++..+
T Consensus 199 Gi~~~~l~G~~i-~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~~~g~~Va~aL~l~-~~~~Ly 276 (370)
T PF04339_consen 199 GIRIRTLTGDEI-TDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVARRDGQPVAFALCLR-GDDTLY 276 (370)
T ss_pred CCEEEEEeCCCC-CHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEEECCeEEEEEEEEE-eCCEEE
Confidence 467777766643 234567777776665432 2333333333333 32332 344556999999998864 344555
Q ss_pred EEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEec
Q 031671 78 ITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQG 140 (155)
Q Consensus 78 i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~ 140 (155)
-.......++.+.- -....-..+++|.++|++.+...... .-=...||+++.+...
T Consensus 277 GRYwG~~~~~~~LH-Fe~cYYq~Ie~aI~~Gl~~f~~GaqG------EHK~~RGf~P~~t~S~ 332 (370)
T PF04339_consen 277 GRYWGCDEEIPFLH-FELCYYQGIEYAIEHGLRRFEPGAQG------EHKIARGFEPVPTYSA 332 (370)
T ss_pred EeeecccccccCcc-hHHHHHHHHHHHHHcCCCEEECCcch------hHHHHcCCccccceee
Confidence 44455556655444 23345678999999999987654322 1123669998876543
No 134
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=90.90 E-value=2.3 Score=30.12 Aligned_cols=107 Identities=11% Similarity=0.248 Sum_probs=66.4
Q ss_pred HHHHHHHHhHhhCCCcHHHhhhHHHHHhccCCceEEEEECCeEEEEEEEEec---CCCeEEEEEEEEccCCCC-CChHHH
Q 031671 20 VVDEIVKMEKKIFPKHESLARSFDEELKKKNSGLLYIQIHGQVVGHVMYAWP---TSLSASITKLAVKENYRG-QGHGEA 95 (155)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~---~~~~~~i~~~~v~~~~r~-~Gig~~ 95 (155)
|++.+..+...+|...-. ..++...+.. ...-++..|.--|.+.++.. ++...++..++|.++.|| .||+..
T Consensus 346 dl~r~q~LI~~SFkRTLd-~h~y~~r~~~---~La~~iVsgdY~g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~gisd~ 421 (495)
T COG5630 346 DLPRLQHLIQSSFKRTLD-PHYYETRINT---PLARAIVSGDYRGAAILTYEGSGENNVPYLDKFAVLDDAQGSEGISDA 421 (495)
T ss_pred CcHHHHHHHHHHHhhccC-HHHHHHhccC---cceeEEeeccceeeEEEEeeccCCCCCcceeeeeccccccccchHHHH
Confidence 556666677777754322 2344444433 23333445667777777754 346899999999999999 999999
Q ss_pred HHHHHHHHHHhCCccEEEEEEecCCchhHhHH--HHcCeEEE
Q 031671 96 LLEAAIKKCRTRTVLCITLHVDPLRTPAVNLY--KKFGFQVD 135 (155)
Q Consensus 96 ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y--~~~Gf~~~ 135 (155)
+.+-+.+...+. +.+....+| .+.+|| ++.|+-..
T Consensus 422 vfniM~e~fP~e----L~WRSR~~N-~vNkwYf~rSvg~lk~ 458 (495)
T COG5630 422 VFNIMREEFPNE----LFWRSRHNN-QVNKWYFARSVGYLKQ 458 (495)
T ss_pred HHHHHHHhCcHh----hhhhhcccC-cchheeeehhhehhhc
Confidence 999887776532 333333333 344554 45555443
No 135
>PRK00756 acyltransferase NodA; Provisional
Probab=90.66 E-value=1.3 Score=27.52 Aligned_cols=116 Identities=14% Similarity=0.013 Sum_probs=66.5
Q ss_pred CCCCceeEecCCCCCcchhHHHHHHHHhHhhCCCcHHHhhh-HH---HHHhccCCceEEEEECCeEEEEEEEE-------
Q 031671 1 MGSNGTVTELQRNSTNWTVVVDEIVKMEKKIFPKHESLARS-FD---EELKKKNSGLLYIQIHGQVVGHVMYA------- 69 (155)
Q Consensus 1 M~~~~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~vG~~~~~------- 69 (155)
|.+.++.+..=.++ ....|--++.++....|+..-.+... |+ +.....+..-.+.++...+++-+.+.
T Consensus 1 mrs~v~W~l~WEne-L~ladH~eLaeFfr~tYgptGafnakpFeG~RSWAGARPElRaIgyD~~GVaAH~G~LRRFIkVg 79 (196)
T PRK00756 1 MSSQVRWKLCWENE-LELSDHAELAEFFRKTYGPTGAFNAKPFEGGRSWAGARPELRAIAYDSHGVAAHMGLLRRFIKVG 79 (196)
T ss_pred CCCcceEEEEeccc-cccchhHHHHHHHHHhcCCcccccccccCcCcccccCCceeEEEeecCccHhHhHHHHhhhheec
Confidence 44555555433332 23336667777777777653322111 11 11111233344555444444433322
Q ss_pred ecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 70 WPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 70 ~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
..+--.++++...|.|+..|.||+..+ ..+.-..++.|+.-...+|..
T Consensus 80 ~vDlLVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~FGtVR~ 127 (196)
T PRK00756 80 EVDLLVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAFGTVRH 127 (196)
T ss_pred ccceeEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeecccchH
Confidence 112237889999999999999999876 677788888888766666554
No 136
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.03 E-value=4.1 Score=27.10 Aligned_cols=60 Identities=10% Similarity=-0.021 Sum_probs=46.7
Q ss_pred CCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecC
Q 031671 59 HGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPL 119 (155)
Q Consensus 59 ~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~ 119 (155)
.|++|+.+..-.-..+.-.+ ..+-+|++...++|+-.+-.-+..|++.|...+++.-...
T Consensus 159 ~G~LvAVavtDvL~dGlSsV-Y~FydPd~s~~SLGt~~iL~~I~~aq~~~l~yvYLGYwI~ 218 (253)
T COG2935 159 EGKLVAVAVTDVLPDGLSSV-YTFYDPDMSKRSLGTLSILDQIAIAQRLGLPYVYLGYWIK 218 (253)
T ss_pred CCcEEEEEeeecccCcceeE-EEEeCCChhhhcchHHHHHHHHHHHHHhCCCeEEEEEEEC
Confidence 78898887765433333333 5667999999999999999999999999999999875443
No 137
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=87.74 E-value=9.9 Score=28.58 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=49.5
Q ss_pred EEECCeEEEEEEEEec-CCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEe
Q 031671 56 IQIHGQVVGHVMYAWP-TSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVD 117 (155)
Q Consensus 56 ~~~~~~~vG~~~~~~~-~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~ 117 (155)
+..+|++||++.+.+. ......++-+.-+|+-= +|+-..|...++.++++.|++++.+..-
T Consensus 398 ~~~~g~VvaFa~l~~~~~~~~~SlDlMR~sp~ap-~g~mdfLf~~li~~aKe~G~~~fsLgmA 459 (538)
T COG2898 398 VDNEGEVVAFANLMPTGGKEGYSLDLMRRSPDAP-NGTMDFLFSELILWAKEEGYQRFSLGMA 459 (538)
T ss_pred EcCCCCeEEEEeecccCCcceeEEEeeecCCCCC-chHHHHHHHHHHHHHHHcCCeEEecCCc
Confidence 3348889999999753 34567787788888865 6999999999999999999999987643
No 138
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=87.06 E-value=8.1 Score=26.84 Aligned_cols=57 Identities=9% Similarity=0.131 Sum_probs=44.2
Q ss_pred ceEEEEE--CCeEEEEEEEEe-------cCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCC
Q 031671 52 GLLYIQI--HGQVVGHVMYAW-------PTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRT 108 (155)
Q Consensus 52 ~~~~~~~--~~~~vG~~~~~~-------~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g 108 (155)
+++.+.. ..++||+++..+ .....+++..++|+.+.|++.+.--|++.+...+...|
T Consensus 133 whigvRvk~t~klVaFIsa~p~~v~vRgK~~~~~evNFLCihk~lRsKRltPvLIkEiTRR~n~~~ 198 (451)
T COG5092 133 WHIGVRVKGTQKLVAFISAKPHLVSVRGKRSSVLEVNFLCIHKELRSKRLTPVLIKEITRRANVDG 198 (451)
T ss_pred eEEEEEEcccceeEEEEecceeEEEEcccccccceEEEEEEehhhhhCccchHHHHHHHHhhhhhh
Confidence 3444444 458999997652 12347899999999999999999999999998887654
No 139
>cd04263 DUF619-NAGK-FABP DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway. DUF619-NAGK-FABP: DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (FABP). The nuclear-encoded, mitochondrial polyprotein precursor (ARG5,6) consists of an N-terminal NAGK (ArgB) domain, a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved into two distinct enzymes (NAGK-DUF619 and NAGPR) in the mitochondria. Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. Arg5,6 catalyzes the second reaction of arginine biosynthesis; the phosphorylation of the gamma-carboxyl group of NAG to produce N-acetylglutamylphosphate (NAGP) which is subsequently converted to ornithine in two more steps. It also binds and regulates the promoters of nuclear and mitochondrial genes, and may possibly regu
Probab=86.74 E-value=4 Score=23.03 Aligned_cols=70 Identities=7% Similarity=-0.035 Sum_probs=48.6
Q ss_pred ceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHH
Q 031671 52 GLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLY 127 (155)
Q Consensus 52 ~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y 127 (155)
..+-++.|+..=+.+.+..+.+...++..+.|..+-++.|++..+.+.+.+. ...+...+.++|+ ..++|
T Consensus 10 ~~~k~Y~de~~~a~AIV~~~~~~vp~LdkF~vs~~~~l~~vaD~Vf~~i~~d-----~p~L~W~~r~~n~-~~~W~ 79 (98)
T cd04263 10 RPFKAYGDEPMEVLAIVLPPSGEVATLATFTITKSGWLNNVADNIFTAIKKD-----HPKLVWTVREDDE-NLKWH 79 (98)
T ss_pred CCeEEEecCCCcEEEEEecCCCCCEEEEEEEEccccccccHHHHHHHHHHhh-----CCeeEEEeCCCCC-ccceE
Confidence 3455555665555555554447789999999999999999999998877655 2367777776665 33443
No 140
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=84.53 E-value=12 Score=26.70 Aligned_cols=85 Identities=12% Similarity=0.069 Sum_probs=60.1
Q ss_pred CceEEEEECCeEEEEEEEEecC---------------------------------CCeEEEEEEEEccCCCCCChHHHHH
Q 031671 51 SGLLYIQIHGQVVGHVMYAWPT---------------------------------SLSASITKLAVKENYRGQGHGEALL 97 (155)
Q Consensus 51 ~~~~~~~~~~~~vG~~~~~~~~---------------------------------~~~~~i~~~~v~~~~r~~Gig~~ll 97 (155)
...+++.++|++||.+-+.... .+.. =..+.++|......+...|+
T Consensus 44 p~hl~~~~~~~lvaa~P~YlK~hS~GEyvFD~~Wa~a~~r~g~~YYPKlv~avPfTPv~-G~R~l~~~~~~~~~~~~~L~ 122 (370)
T PF04339_consen 44 PRHLTLRDGGRLVAAAPLYLKSHSYGEYVFDWAWADAYQRAGLRYYPKLVGAVPFTPVT-GPRLLIAPGADRAALRAALL 122 (370)
T ss_pred ceEEEEEECCEEEEEeeeeeecccCcceehhHHHHHHHHHhccccCcceEeeeCCCCCc-ccceeECCCCCHHHHHHHHH
Confidence 3457788899999998665100 1111 12577888888889999999
Q ss_pred HHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEE
Q 031671 98 EAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 98 ~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~ 138 (155)
+.+.+.+.+.|+..+.+.. .+..-....+..||......
T Consensus 123 ~~~~~~a~~~~~Ss~h~lF--~~~~~~~~l~~~G~~~r~~~ 161 (370)
T PF04339_consen 123 QALEQLAEENGLSSWHILF--PDEEDAAALEEAGFLSRQGV 161 (370)
T ss_pred HHHHHHHHHcCCCcceeec--CCHHHHHHHHhCCCceecCC
Confidence 9999999999887766542 23445577789999875433
No 141
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=84.02 E-value=3.6 Score=26.63 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHHHHHhC--CccEEEEEEecCCchhHhHHHHcCeEEEEEE
Q 031671 91 GHGEALLEAAIKKCRTR--TVLCITLHVDPLRTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 91 Gig~~ll~~~~~~~~~~--g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~ 138 (155)
|+|-.++..+++..... ....+.+.........+++..++||....+.
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEE
T ss_pred cCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeE
Confidence 78888999998888754 4567777666555567888999999988754
No 142
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=80.60 E-value=19 Score=26.08 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=40.1
Q ss_pred CCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEE
Q 031671 59 HGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLH 115 (155)
Q Consensus 59 ~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~ 115 (155)
++.+++.+.+........++ .-+.+++|++-+-...|.-.++++|+++|+...-..
T Consensus 301 ~~~~la~~l~~~~g~~~~yl-y~gs~~~~~~~~~~~~l~~~~i~~a~~~G~~~ydf~ 356 (406)
T PF02388_consen 301 DEIPLAGALFIYYGDEAYYL-YGGSDEEYRKFYAPYLLQWEAIKYAKEKGIKRYDFG 356 (406)
T ss_dssp SEEEEEEEEEEEETTEEEEE-EEEE-CGCGGCTHHHHHHHHHHHHHHHTT-SEEEEE
T ss_pred CcceEEEEEEEEECCEEEEE-ECccchhhHhcCcchHHHHHHHHHHHHCCCCEEEee
Confidence 34456555554444444444 778899999999899999999999999999877664
No 143
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.54 E-value=4.8 Score=26.18 Aligned_cols=36 Identities=11% Similarity=0.264 Sum_probs=26.9
Q ss_pred HHHHhCCccEEEEE---EecCCchhHhHHHHcCeEEEEE
Q 031671 102 KKCRTRTVLCITLH---VDPLRTPAVNLYKKFGFQVDTL 137 (155)
Q Consensus 102 ~~~~~~g~~~~~~~---~~~~n~~a~~~y~~~Gf~~~~~ 137 (155)
+..+..|++++.+- +.+-|++...|++..||++...
T Consensus 111 ~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~ 149 (238)
T COG3473 111 EALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDF 149 (238)
T ss_pred HHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEe
Confidence 33444577776664 5677999999999999998763
No 144
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=80.52 E-value=12 Score=23.66 Aligned_cols=73 Identities=10% Similarity=0.023 Sum_probs=47.4
Q ss_pred EEEccCCCCCChHHHHHHHHHHHHHhC-CccEEEEEEecCCch---hHhHHHHcCeEEEEEEeccccCCCceeEeee
Q 031671 81 LAVKENYRGQGHGEALLEAAIKKCRTR-TVLCITLHVDPLRTP---AVNLYKKFGFQVDTLIQGFYSADRPAYERTF 153 (155)
Q Consensus 81 ~~v~~~~r~~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n~~---a~~~y~~~Gf~~~~~~~~~~~~~~~~~~m~~ 153 (155)
++.-|+-.=-+.-++=+.++++.|.++ .+.++.+....++.. ..+-+.=+||++........-+..+.+.|..
T Consensus 105 ~~~IPdq~l~~gsKe~lvalLEfAEekl~~d~Vfi~F~K~R~dr~~LlrtfsyvGFEpvrp~HP~~pp~~~~ffM~Y 181 (191)
T KOG4387|consen 105 FFEIPDQALDVGSKEGLVALLEFAEEKLHVDKVFICFDKNREDRAALLRTFSYVGFEPVRPDHPVVPPRPDVFFMVY 181 (191)
T ss_pred EEecCcchhcccchHhHHHHHHHHHHhhccceEEEEEecCccChHhhhhhehcceeeecCCCCCCCCCccceEEEEE
Confidence 344444444455666667777777766 788999888876653 3455666799988755433344567777764
No 145
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=79.11 E-value=0.64 Score=35.59 Aligned_cols=83 Identities=19% Similarity=0.228 Sum_probs=61.5
Q ss_pred CceEEEEECCe-EEEEEEEEe-cCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCC-ccEEEEEEecCCchhHhHH
Q 031671 51 SGLLYIQIHGQ-VVGHVMYAW-PTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRT-VLCITLHVDPLRTPAVNLY 127 (155)
Q Consensus 51 ~~~~~~~~~~~-~vG~~~~~~-~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g-~~~~~~~~~~~n~~a~~~y 127 (155)
...+....++. +||-..... +..+...+..-.|.-+.|-+|+|+-+++++.++.++.+ +..+... +...++..+
T Consensus 419 h~~~~~~~d~~g~vggi~~r~f~~k~f~eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~~i~~~lty---ad~~aigyf 495 (720)
T KOG1472|consen 419 HHVMARIKDNEGVVGGICFRPFPEKGFTEIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSSTIDYALTY---ADEGAIGYF 495 (720)
T ss_pred cccceeeccccccccccccCcCcccCCcceeeccccCcccccccCcCchhhHHHHhhccchHHHHHHh---hhhcccccc
Confidence 33344333444 787777664 55567888888999999999999999999999999875 5544444 445688999
Q ss_pred HHcCeEEEE
Q 031671 128 KKFGFQVDT 136 (155)
Q Consensus 128 ~~~Gf~~~~ 136 (155)
++.||...-
T Consensus 496 kkqgfs~ei 504 (720)
T KOG1472|consen 496 KKQGFSKEI 504 (720)
T ss_pred cCccchhhc
Confidence 999998653
No 146
>PHA00771 head assembly protein
Probab=78.28 E-value=12 Score=22.25 Aligned_cols=72 Identities=14% Similarity=0.048 Sum_probs=48.7
Q ss_pred EEEccCCCCCChHHHHHHHHHHHHHhC-CccEEEEEEecCCchhHhHHHHcCeEEEEEEeccccCCCceeEeeec
Q 031671 81 LAVKENYRGQGHGEALLEAAIKKCRTR-TVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGFYSADRPAYERTFL 154 (155)
Q Consensus 81 ~~v~~~~r~~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~~~~~~m~~~ 154 (155)
-.-+|++||+-- +.-....++..+. .+..+...+...-.-.+-..+-+|.+.+|.+.+++....+..+++.+
T Consensus 67 a~y~P~fRG~ya--~~~r~F~kwlL~Nt~f~~vit~vp~kt~~G~vic~lig~rRVG~id~a~~g~~~vT~Yq~T 139 (151)
T PHA00771 67 AMYLPEIRGFSK--EIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAMIGLKRVGTIKKYFKGVDDVTFYSAT 139 (151)
T ss_pred eeeCccccchhH--HHHHHHHHHHhcCCceeEEEEecccccccchhhhhhhCCceeeeHHHHhcCCCceEEEEcC
Confidence 345899997633 5555566666655 55555555555555566667888999999999999666566665543
No 147
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=77.04 E-value=6.3 Score=23.45 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=33.3
Q ss_pred CCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEE
Q 031671 87 YRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQV 134 (155)
Q Consensus 87 ~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~ 134 (155)
=||-|+|+.+++.+.+...+. +.+...-+|.-|-.-..|.|-..
T Consensus 7 GQGGGiG~~iv~~lr~~~~~~----~eI~AlGTNa~AT~~MlKaGA~~ 50 (131)
T PF12953_consen 7 GQGGGIGKQIVEKLRKELPEE----VEIIALGTNAIATSAMLKAGANE 50 (131)
T ss_pred CCCChhHHHHHHHHHHhCCCC----cEEEEEehhHHHHHHHHHcCCCC
Confidence 389999999999988877662 34444448888888888888764
No 148
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=76.43 E-value=3.6 Score=23.56 Aligned_cols=24 Identities=17% Similarity=0.505 Sum_probs=17.0
Q ss_pred EEEEEecCCchhHhHHHHcCeEEEE
Q 031671 112 ITLHVDPLRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 112 ~~~~~~~~n~~a~~~y~~~Gf~~~~ 136 (155)
+.+.|. +=..|++||+++||+...
T Consensus 4 i~l~V~-D~~~a~~FY~~LGf~~~~ 27 (122)
T cd07235 4 VGIVVA-DMAKSLDFYRRLGFDFPE 27 (122)
T ss_pred EEEEec-cHHHHHHHHHHhCceecC
Confidence 444443 445799999999998753
No 149
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=76.05 E-value=8 Score=25.44 Aligned_cols=48 Identities=10% Similarity=0.184 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHHHHhC--CccEEEEEEecCCchhHhHHHHcCeEEEEEE
Q 031671 91 GHGEALLEAAIKKCRTR--TVLCITLHVDPLRTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 91 Gig~~ll~~~~~~~~~~--g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~ 138 (155)
|+|-.++..+++...+. +..++.+.....-...+.+..+++|+...+.
T Consensus 93 GMGG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 93 GMGGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAET 142 (226)
T ss_pred CCcHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeee
Confidence 88889999999988876 5667776644333456788899999987643
No 150
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=75.93 E-value=5.3 Score=26.59 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEE---ecCCchhHhHHHHcCeEEEEEE
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHV---DPLRTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~---~~~n~~a~~~y~~~Gf~~~~~~ 138 (155)
...-..++.+.++..|+++|.+.+ ..-|.....||++.||++....
T Consensus 104 ~tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~ 152 (239)
T TIGR02990 104 VVTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFT 152 (239)
T ss_pred eeCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeee
Confidence 334455666677777999998863 3346678999999999988753
No 151
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=75.38 E-value=3.1 Score=24.67 Aligned_cols=28 Identities=11% Similarity=0.247 Sum_probs=20.2
Q ss_pred ccEEEEEEecCCchhHhHHHHcCeEEEEE
Q 031671 109 VLCITLHVDPLRTPAVNLYKKFGFQVDTL 137 (155)
Q Consensus 109 ~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~ 137 (155)
+..+.+.|. +=..+++||+++||+....
T Consensus 4 i~Hi~i~v~-Dl~~s~~FY~~LG~~~~~~ 31 (142)
T cd08353 4 MDNVGIVVR-DLEAAIAFFLELGLELEGR 31 (142)
T ss_pred eeeEEEEeC-CHHHHHHHHHHcCCEEccc
Confidence 445666555 4567999999999987544
No 152
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=74.77 E-value=11 Score=25.95 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=38.7
Q ss_pred EEEECCeEEEEEEEEec-CCCeEEEE--EEEEccCCCCCChHHHHH----HHHHHHHHhCCcc
Q 031671 55 YIQIHGQVVGHVMYAWP-TSLSASIT--KLAVKENYRGQGHGEALL----EAAIKKCRTRTVL 110 (155)
Q Consensus 55 ~~~~~~~~vG~~~~~~~-~~~~~~i~--~~~v~~~~r~~Gig~~ll----~~~~~~~~~~g~~ 110 (155)
|+..+|+++|+-.+... ++.-..+. ..++||+++.--.|+-|+ +.+.+.|.+.|.+
T Consensus 207 VLfl~~~PcA~qlv~k~eSp~wi~~D~iNgG~Dpe~~~~spGSIL~WlNi~~A~~~~~~~~K~ 269 (298)
T PRK15312 207 ILYIEGIPCAFDIVLKSESQMNVYFDVPNGAVKNECMPLSPGSILMWLNISRARHYCQERQKK 269 (298)
T ss_pred EEEECCcceEEEEEEEecCCCcEEEecccCccCcccccCCCccEEEEecHHHHHHHHHhcCCc
Confidence 45559999999887643 33333332 458999999999999764 6666666666543
No 153
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=71.42 E-value=21 Score=21.93 Aligned_cols=46 Identities=9% Similarity=0.270 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEE-----------ecCCchhHhHHHHcCeEEEEEE
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHV-----------DPLRTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~-----------~~~n~~a~~~y~~~Gf~~~~~~ 138 (155)
+....+.+.+.+.+.|++.+.+.+ .+..+.+++-+.+.|+++....
T Consensus 74 Aq~aa~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I~ 130 (149)
T PTZ00129 74 AMMAAQDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIE 130 (149)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 345566777888889999999998 5667789999999999987654
No 154
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=70.72 E-value=30 Score=23.51 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=40.3
Q ss_pred EEEECCeEEEEEEEEe-cCCCeEEEE--EEEEccCCCCCChHHHHH----HHHHHHHHhCCcc
Q 031671 55 YIQIHGQVVGHVMYAW-PTSLSASIT--KLAVKENYRGQGHGEALL----EAAIKKCRTRTVL 110 (155)
Q Consensus 55 ~~~~~~~~vG~~~~~~-~~~~~~~i~--~~~v~~~~r~~Gig~~ll----~~~~~~~~~~g~~ 110 (155)
+...+|++||+-.+.. +++.-..+. ..++||+++.--.|+-|+ +.+.++|.+.|-.
T Consensus 177 vL~l~~~P~Aiqlv~k~es~~wv~~D~iNgG~Dp~~~~~SpGSiL~w~Ni~~A~~~~~~~~k~ 239 (264)
T PF07395_consen 177 VLFLNGQPCAIQLVYKVESPKWVYFDYINGGYDPECRDFSPGSILMWLNIQDAWEYCRAQGKP 239 (264)
T ss_pred EEEECCcceEEEEEEEecCCCeEEEecccCccCcccccCCCccEEEEeeHHHHHHHHHHhCCc
Confidence 4555999999988764 334434443 358899999999999774 6777777777644
No 155
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=69.45 E-value=3.6 Score=23.44 Aligned_cols=18 Identities=17% Similarity=0.442 Sum_probs=15.0
Q ss_pred chhHhHHHHcCeEEEEEE
Q 031671 121 TPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 121 ~~a~~~y~~~Gf~~~~~~ 138 (155)
..+++||+.+||+.....
T Consensus 13 ~~s~~FY~~LGf~~~~~~ 30 (113)
T cd08356 13 AESKQFYQALGFELEWEN 30 (113)
T ss_pred HHHHHHHHHhCCeeEecC
Confidence 469999999999987654
No 156
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=69.01 E-value=17 Score=23.02 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEec
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQG 140 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~ 140 (155)
|+-|+.++.+.+.+ .+..+.+-+.+..+....+..+.|++.......
T Consensus 26 GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~gv~vi~tpG~ 72 (177)
T COG2266 26 GKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVGVKVIETPGE 72 (177)
T ss_pred CccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcCceEEEcCCC
Confidence 67899999998888 678899989988888888889999888776543
No 157
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=68.82 E-value=40 Score=24.11 Aligned_cols=82 Identities=10% Similarity=0.036 Sum_probs=49.7
Q ss_pred EEEEE-CCeEEEEEEEEecC--------CC---eEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCc
Q 031671 54 LYIQI-HGQVVGHVMYAWPT--------SL---SASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRT 121 (155)
Q Consensus 54 ~~~~~-~~~~vG~~~~~~~~--------~~---~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~ 121 (155)
++++. +|++-+++++.... .. .+++ ...|... -=-..|+..++-.+++.|++...+...-.|
T Consensus 310 yVvesp~g~ITDF~SFy~lpsTv~~~~~~ktl~aaYl-yY~v~~~----t~~~~lvnDalilak~~gfDVFNAld~meN- 383 (421)
T KOG2779|consen 310 YVVESPNGKITDFCSFYSLPSTVMGNPKYKTLQAAYL-YYNVATS----TPLLQLVNDALILAKQKGFDVFNALDLMEN- 383 (421)
T ss_pred EEEECCCCcccceeeEEeccccccCCCCcceeeeeeE-EEeccCC----ccHHHHHHHHHHHHHhcCCceeehhhhhhh-
Confidence 44554 88998999876311 11 2333 2333322 224578889999999999886655433344
Q ss_pred hhHhHHHHcCeEEEEEEecccc
Q 031671 122 PAVNLYKKFGFQVDTLIQGFYS 143 (155)
Q Consensus 122 ~a~~~y~~~Gf~~~~~~~~~~~ 143 (155)
..|+++++|-+-.-.-.||.
T Consensus 384 --~~fl~~LkFg~GdG~l~YYL 403 (421)
T KOG2779|consen 384 --ESFLKDLKFGPGDGNLQYYL 403 (421)
T ss_pred --hhHHHhcCcCcCCCceeEEE
Confidence 37899999987543334443
No 158
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=67.38 E-value=19 Score=20.88 Aligned_cols=88 Identities=11% Similarity=0.113 Sum_probs=47.5
Q ss_pred hhHHHHHhccCCceEEEEE-CCeEEEEEEEEec--CCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEE
Q 031671 40 RSFDEELKKKNSGLLYIQI-HGQVVGHVMYAWP--TSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHV 116 (155)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~-~~~~vG~~~~~~~--~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~ 116 (155)
..+...+.+.....+.+.. .+++-|.-.+..- .+....+-.+++.| .-+-.+++.+.+.|++.+++..
T Consensus 17 ~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~---------~~~~~~v~~~~~~g~~~v~~~~ 87 (116)
T PF13380_consen 17 YRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPP---------DKVPEIVDEAAALGVKAVWLQP 87 (116)
T ss_dssp HHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-H---------HHHHHHHHHHHHHT-SEEEE-T
T ss_pred HHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCH---------HHHHHHHHHHHHcCCCEEEEEc
Confidence 3444444443323333322 4455555554421 12334444444443 4566667777777999999998
Q ss_pred ecCCchhHhHHHHcCeEEEE
Q 031671 117 DPLRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 117 ~~~n~~a~~~y~~~Gf~~~~ 136 (155)
...+..+.++.++.|.+..+
T Consensus 88 g~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 88 GAESEELIEAAREAGIRVIG 107 (116)
T ss_dssp TS--HHHHHHHHHTT-EEEE
T ss_pred chHHHHHHHHHHHcCCEEEe
Confidence 88889999999999999876
No 159
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=66.85 E-value=2.6 Score=21.55 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=10.2
Q ss_pred EccCCCCCChHHHH
Q 031671 83 VKENYRGQGHGEAL 96 (155)
Q Consensus 83 v~~~~r~~Gig~~l 96 (155)
=+|+||++.+++.|
T Consensus 52 HhPqYrn~~iA~LL 65 (67)
T PF03376_consen 52 HHPQYRNQQIAALL 65 (67)
T ss_pred cCchhcCHHHHHHh
Confidence 36888888887754
No 160
>PRK14968 putative methyltransferase; Provisional
Probab=66.35 E-value=28 Score=21.62 Aligned_cols=45 Identities=9% Similarity=0.173 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEe
Q 031671 95 ALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 95 ~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 139 (155)
.+++.+...++..|.-.+.......+.....++.+.||+......
T Consensus 129 ~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 129 RFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAE 173 (188)
T ss_pred HHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeee
Confidence 345555555555553323222223456688999999998776544
No 161
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=66.23 E-value=7 Score=22.48 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=14.6
Q ss_pred CCchhHhHHHHcCeEEEE
Q 031671 119 LRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 119 ~n~~a~~~y~~~Gf~~~~ 136 (155)
+=.+|+.||+.+||+...
T Consensus 10 Dl~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 10 DLEKSTAFYTALGFEFNP 27 (124)
T ss_pred CHHHHHHHHHHCCCEEcc
Confidence 345799999999999764
No 162
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=66.13 E-value=12 Score=23.17 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCccEEEEEEe--cCC--chhHhHHHHcCeEEEEEE
Q 031671 97 LEAAIKKCRTRTVLCITLHVD--PLR--TPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 97 l~~~~~~~~~~g~~~~~~~~~--~~n--~~a~~~y~~~Gf~~~~~~ 138 (155)
++..++.|++.|++++-+-.- -.+ ....++++..||++.+..
T Consensus 43 veEiieFak~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV~ 88 (157)
T PF08901_consen 43 VEEIIEFAKRMGYKKIGIAFCIGLRKEARILAKILEANGFEVYSVC 88 (157)
T ss_pred HHHHHHHHHHcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEEE
Confidence 567788888889888866411 112 224567789999988754
No 163
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=63.28 E-value=5.6 Score=24.08 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=21.9
Q ss_pred CccEEEEEEecCCchhHhHHHHcCeEEEEEE
Q 031671 108 TVLCITLHVDPLRTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 108 g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~ 138 (155)
|+..|...+.. -..+..+++++||+.+++-
T Consensus 9 G~dFvEFa~~~-~~~l~~~~~~lGF~~~a~h 38 (139)
T PF14696_consen 9 GFDFVEFAVPD-AQALAQLFTALGFQPVARH 38 (139)
T ss_dssp EEEEEEEE-SS-TTSCHHHHCCCCEEEECCE
T ss_pred CeEEEEEecCC-HHHHHHHHHHhCcceEEec
Confidence 56677776665 4567788899999998854
No 164
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=62.66 E-value=7 Score=22.36 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=15.8
Q ss_pred CchhHhHHHHcCeEEEEEEe
Q 031671 120 RTPAVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 120 n~~a~~~y~~~Gf~~~~~~~ 139 (155)
=..|++||+++||+......
T Consensus 13 l~~s~~FY~~lG~~~~~~~~ 32 (120)
T cd08350 13 LDATEAFYARLGFSVGYRQA 32 (120)
T ss_pred HHHHHHHHHHcCCEEEecCC
Confidence 35799999889999876544
No 165
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=62.60 E-value=17 Score=21.52 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=17.6
Q ss_pred EEEEEecCCchhHhHHH-HcCeEEEEEE
Q 031671 112 ITLHVDPLRTPAVNLYK-KFGFQVDTLI 138 (155)
Q Consensus 112 ~~~~~~~~n~~a~~~y~-~~Gf~~~~~~ 138 (155)
+.+.|. +-..|++||+ .+||+...+.
T Consensus 6 v~irV~-DlerSi~FY~~vLG~~~~~~~ 32 (127)
T cd08358 6 FVFKVG-NRNKTIKFYREVLGMKVLRHE 32 (127)
T ss_pred EEEEeC-CHHHHHHHHHHhcCCEEEeee
Confidence 334443 4568999995 5899976543
No 166
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=62.34 E-value=60 Score=23.85 Aligned_cols=91 Identities=14% Similarity=0.169 Sum_probs=55.8
Q ss_pred eEEEEECCeEEEEEEEEecCCCeEEEEEEEE-cc--CCCCCChHHHHHHHHHHHHHhCCccEEEEE--------------
Q 031671 53 LLYIQIHGQVVGHVMYAWPTSLSASITKLAV-KE--NYRGQGHGEALLEAAIKKCRTRTVLCITLH-------------- 115 (155)
Q Consensus 53 ~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v-~~--~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~-------------- 115 (155)
++.+..++..|+.+++..........-.+.- .| +|-++.+-..+++.+.+++++..+-.+.+.
T Consensus 42 ~~~v~~~~~~v~aa~ll~k~~~~~~~~~~~prGPv~dy~~~~l~~~~~k~l~~y~k~~~~l~i~idP~l~~~~~~~~~~~ 121 (418)
T COG2348 42 LIGVKKDGNAVIAASLLSKKLPLGFYTYYIPRGPVMDYSNQELLDYFIKELKKYAKSKRALFIKIDPYLVYQQFDLGGEI 121 (418)
T ss_pred eEEEEecCceeeeeeeeeeeccCCceEEEecCCCcccccchHHHHHHHHHHHHHHhhccceEEEeccchhhhcccCCCcc
Confidence 3555556666555544322211111112222 44 888999999999999999987644333222
Q ss_pred -EecCCchhHhHHHHcCeEEEEEEecccc
Q 031671 116 -VDPLRTPAVNLYKKFGFQVDTLIQGFYS 143 (155)
Q Consensus 116 -~~~~n~~a~~~y~~~Gf~~~~~~~~~~~ 143 (155)
....|...++.+.++|++..+....+-.
T Consensus 122 ~~~~~n~~~i~~l~~lG~k~~g~t~~~~~ 150 (418)
T COG2348 122 IENYNNLAIIKLLKDLGYKHSGFTKGLDD 150 (418)
T ss_pred ccCcchHHHHHHHHHhhhhhcCcccccCc
Confidence 1145678899999999998886665543
No 167
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=61.46 E-value=12 Score=21.02 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=19.4
Q ss_pred ccEEEEEEecCCchhHhHHHHcCeEEEEE
Q 031671 109 VLCITLHVDPLRTPAVNLYKKFGFQVDTL 137 (155)
Q Consensus 109 ~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~ 137 (155)
+..+.+.|. +=..+.+||..+||++...
T Consensus 3 i~hv~l~v~-d~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 3 IDHFALEVP-DLEVARRFYEAFGLDVREE 30 (112)
T ss_pred eeEEEEecC-CHHHHHHHHHHhCCcEEee
Confidence 344555544 3457999999999998653
No 168
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=61.42 E-value=16 Score=21.56 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=19.7
Q ss_pred EEEEEEecCCchhHhHHHH-cCeEEEEEEe
Q 031671 111 CITLHVDPLRTPAVNLYKK-FGFQVDTLIQ 139 (155)
Q Consensus 111 ~~~~~~~~~n~~a~~~y~~-~Gf~~~~~~~ 139 (155)
.+.+.|. +=..+++||++ +||+......
T Consensus 3 Hi~i~V~-D~e~s~~FY~~vLGf~~~~~~~ 31 (136)
T cd08342 3 HVEFYVG-NAKQLASWFSTKLGFEPVAYHG 31 (136)
T ss_pred EEEEEeC-CHHHHHHHHHHhcCCeEEEecC
Confidence 4555553 44579999998 9999876543
No 169
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=61.27 E-value=18 Score=20.49 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=19.6
Q ss_pred ccEEEEEEecCCchhHhHHHH-cCeEEEEEE
Q 031671 109 VLCITLHVDPLRTPAVNLYKK-FGFQVDTLI 138 (155)
Q Consensus 109 ~~~~~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 138 (155)
+..+.+.|. +=..+.+||++ +||+.....
T Consensus 2 i~hv~l~v~-d~~~a~~FY~~~lG~~~~~~~ 31 (126)
T cd08346 2 LHHVTLITR-DAQETVDFYTDVLGLRLVKKT 31 (126)
T ss_pred cccEEEEcC-ChhHhHHHHHHccCCEEeeeE
Confidence 344555554 44579999975 799987654
No 170
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=61.11 E-value=12 Score=21.15 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=18.4
Q ss_pred cEEEEEEecCCchhHhHHHHcCeEEEEE
Q 031671 110 LCITLHVDPLRTPAVNLYKKFGFQVDTL 137 (155)
Q Consensus 110 ~~~~~~~~~~n~~a~~~y~~~Gf~~~~~ 137 (155)
..+.+.|. +=..|.+||..+||+....
T Consensus 5 ~hv~l~v~-Dl~~s~~FY~~lGl~~~~~ 31 (113)
T cd07267 5 AHVRFEHP-DLDKAERFLTDFGLEVAAR 31 (113)
T ss_pred EEEEEccC-CHHHHHHHHHHcCCEEEEe
Confidence 34455444 2356999999999987654
No 171
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=59.68 E-value=44 Score=22.12 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=50.6
Q ss_pred CceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCC-chhHhHHHH
Q 031671 51 SGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLR-TPAVNLYKK 129 (155)
Q Consensus 51 ~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n-~~a~~~y~~ 129 (155)
...++.....+++-++.+...+...+.|-+-.|+| |.-+...|-+.+-+.+... +.. .| ....+++.+
T Consensus 127 ~gai~~~sgk~ile~vavkr~d~~~WAiPGGmvdp---GE~vs~tLkRef~eEa~ns-~~k-------~~e~~l~~~~~~ 195 (275)
T KOG4195|consen 127 DGAICRKSGKKILEFVAVKRPDNGEWAIPGGMVDP---GEKVSATLKREFGEEAMNS-LQK-------SNEEMLHKLLSQ 195 (275)
T ss_pred CCCeeecccceeeEEEEEecCCCCcccCCCCcCCc---hhhhhHHHHHHHHHHHHHH-Hhh-------hhHHHHHHHHHh
Confidence 33344444556788888887777788888888998 5567777766666665542 111 11 145679999
Q ss_pred cCeEEEEEE
Q 031671 130 FGFQVDTLI 138 (155)
Q Consensus 130 ~Gf~~~~~~ 138 (155)
+|+++..-.
T Consensus 196 ~g~evYkGY 204 (275)
T KOG4195|consen 196 CGMEVYKGY 204 (275)
T ss_pred CCeEEeeee
Confidence 999986533
No 172
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=58.51 E-value=57 Score=23.04 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=28.9
Q ss_pred CCceEEEEE-CCeEEEEEEEEecCCCeEEEEEEEEccCCCC
Q 031671 50 NSGLLYIQI-HGQVVGHVMYAWPTSLSASITKLAVKENYRG 89 (155)
Q Consensus 50 ~~~~~~~~~-~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~ 89 (155)
...++++.. +|.+|+++.+. +..-+|.++.|.|..|.
T Consensus 281 ~CGv~vidl~tG~vv~~l~fe---g~v~EifdV~vLPg~r~ 318 (335)
T TIGR03032 281 GCGVAVIDLNSGDVVHWLRFE---GVIEEIYDVAVLPGVRR 318 (335)
T ss_pred cccEEEEECCCCCEEEEEEeC---CceeEEEEEEEecCCCC
Confidence 355555543 89999999884 55789999999999875
No 173
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=57.86 E-value=49 Score=21.36 Aligned_cols=123 Identities=9% Similarity=0.073 Sum_probs=68.1
Q ss_pred eEecCCCCCcchhHHHHHHHHhHhhCCC---cHHHh-hhHHHHHhccCC--ceEEEEE-CCeEEEEEEEEe------cCC
Q 031671 7 VTELQRNSTNWTVVVDEIVKMEKKIFPK---HESLA-RSFDEELKKKNS--GLLYIQI-HGQVVGHVMYAW------PTS 73 (155)
Q Consensus 7 ir~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~--~~~~~~~-~~~~vG~~~~~~------~~~ 73 (155)
+|++++. |++.+..+....... ...+. +.+.-.+..... ..+|+++ ++++-.++++.. ..+
T Consensus 31 lR~m~~~------Dv~~v~~Ll~~yl~~f~l~~~fs~eev~Hw~lp~~~Vv~syVve~~~~~ITDf~SFY~Lpstvi~~~ 104 (190)
T PF02799_consen 31 LRPMEEK------DVPQVTKLLNKYLKKFDLAPVFSEEEVKHWFLPRKNVVYSYVVEDPDGKITDFFSFYSLPSTVIGNP 104 (190)
T ss_dssp EEE--GG------GHHHHHHHHHHHHTTSSEEEE--HHHHHHHHS-BTTTEEEEEEEETTSEEEEEEEEEEEEEEESSSS
T ss_pred cccCchh------hHHHHHHHHHHHHHhcccccccCHHHHHhhcccCCCeEEEEEEecCCCceeeEEEEeecceeecCCC
Confidence 8999998 788777776654321 11111 222222222222 3455555 458888887652 111
Q ss_pred --C---eEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEecccc
Q 031671 74 --L---SASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGFYS 143 (155)
Q Consensus 74 --~---~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~ 143 (155)
. .+++ ...+... -=-+.|+..++-.|++.|++...+-..-+|. .|.+.+.|.+-.-.-.||.
T Consensus 105 k~~~l~aAY~-fY~~~~~----~~l~~Lm~DaLi~Ak~~gfDVFNaLd~mdN~---~fL~~lKFg~GdG~L~YYL 171 (190)
T PF02799_consen 105 KHKTLKAAYS-FYYVATS----TRLKELMNDALILAKNEGFDVFNALDLMDNS---SFLEDLKFGPGDGNLNYYL 171 (190)
T ss_dssp SSSEEEEEEE-EEEEESS----SHHHHHHHHHHHHHHHTTESEEEEESTTTGG---GTTTTTT-EEEEEEEEEEE
T ss_pred Cccceeeeee-eeeeecC----CCHHHHHHHHHHHHHHcCCCEEehhhhccch---hhHhhCCccCCCCCeEEEE
Confidence 1 2333 3333332 2346799999999999999977665444554 7899999997543444554
No 174
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=57.78 E-value=33 Score=22.05 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=36.5
Q ss_pred CCChHHHHHHHHHHHHHhCCccEEEEEEecCC--chhHhHHHHcCeEEEE
Q 031671 89 GQGHGEALLEAAIKKCRTRTVLCITLHVDPLR--TPAVNLYKKFGFQVDT 136 (155)
Q Consensus 89 ~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n--~~a~~~y~~~Gf~~~~ 136 (155)
+.-.--.+++.+.+.+++.|.+.+.+.-.+.. ......++.+||....
T Consensus 17 ~~~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~ 66 (206)
T PF04015_consen 17 GATTHPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKRSGYEEIA 66 (206)
T ss_pred CccCCHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHHcchhhHH
Confidence 34455689999999999999886766644443 3688899999998764
No 175
>PF06559 DCD: 2'-deoxycytidine 5'-triphosphate deaminase (DCD); InterPro: IPR010550 This family consists of several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (3.5.4.13 from EC).; GO: 0008829 dCTP deaminase activity; PDB: 2R9Q_C.
Probab=55.34 E-value=7.9 Score=27.17 Aligned_cols=35 Identities=31% Similarity=0.579 Sum_probs=12.7
Q ss_pred ECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCCh
Q 031671 58 IHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGH 92 (155)
Q Consensus 58 ~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gi 92 (155)
.+|++||-..+-.-...--.+..-.+..+||+||+
T Consensus 322 ehGQ~vgrLvyE~m~~~P~~lYG~~~gSnYq~QgL 356 (364)
T PF06559_consen 322 EHGQIVGRLVYERMAERPERLYGAGIGSNYQGQGL 356 (364)
T ss_dssp ETT-EEEEEEEEEBSS----TTSS-----------
T ss_pred eCCcEEEEEEehhhccCccccccccccccchhhhh
Confidence 48999999888753333333444457788999886
No 176
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=55.16 E-value=17 Score=20.49 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=20.3
Q ss_pred CccEEEEEEecCCchhHhHHHH-cCeEEEEEE
Q 031671 108 TVLCITLHVDPLRTPAVNLYKK-FGFQVDTLI 138 (155)
Q Consensus 108 g~~~~~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 138 (155)
++..+.+.+. +=..+++||++ +||+.....
T Consensus 3 ~i~hv~l~v~-d~~~s~~FY~~~lG~~~~~~~ 33 (120)
T cd08362 3 ALRGVGLGVP-DLAAAAAFYREVWGLSVVAED 33 (120)
T ss_pred eeeEEEEecC-CHHHHHHHHHhCcCcEEEEec
Confidence 3455666554 34679999986 899987543
No 177
>TIGR00667 aat leucyl/phenylalanyl-tRNA--protein transferase. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway. This enzyme transfers a Leu or Phe to the amino end of certain proteins to enable degradation.
Probab=54.30 E-value=56 Score=20.98 Aligned_cols=81 Identities=10% Similarity=-0.072 Sum_probs=49.8
Q ss_pred HHHHhccCCceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccC--CCCCChHHHHHHHHHHHHHhCCccEEEEEEecCC
Q 031671 43 DEELKKKNSGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKEN--YRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLR 120 (155)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~--~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n 120 (155)
.+.........+=++.++++||-..-.. |+.++.-++ ++...-.+..+-++.+.+++.|+.-+-+ .-.|
T Consensus 90 ~~LH~~G~AHSvEvw~~~~LvGGlYGv~-------iG~~F~GESMFs~~~nASKvAl~~L~~~L~~~g~~liDc--Q~~t 160 (185)
T TIGR00667 90 HRLHELGHAHSFEVWQGDELVGGMYGIA-------QGGLFCGESMFSRMTNASKTALLVFCEHFIRHGGQLIDC--QVQN 160 (185)
T ss_pred HHHHHhCceEEEEEEECCEEEEeeeeee-------eCCeEEeccccccCCChhHHHHHHHHHHHHHCCCcEEEE--CCCC
Confidence 3333333444555667999998665431 222222222 4566788889999999999999885544 3333
Q ss_pred chhHhHHHHcCeEEEE
Q 031671 121 TPAVNLYKKFGFQVDT 136 (155)
Q Consensus 121 ~~a~~~y~~~Gf~~~~ 136 (155)
.-..++|-+.+.
T Consensus 161 ----~HL~slGa~ei~ 172 (185)
T TIGR00667 161 ----PHLASLGAYEVP 172 (185)
T ss_pred ----HHHHhcCCEEcC
Confidence 344777777665
No 178
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=53.93 E-value=24 Score=19.92 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=21.3
Q ss_pred ccEEEEEEecCCchhHhHHHH-cCeEEEEEEe
Q 031671 109 VLCITLHVDPLRTPAVNLYKK-FGFQVDTLIQ 139 (155)
Q Consensus 109 ~~~~~~~~~~~n~~a~~~y~~-~Gf~~~~~~~ 139 (155)
+..+.+.|. +=+.+..||++ +||+......
T Consensus 2 l~Hi~i~v~-d~~~~~~FY~~~lG~~~~~~~~ 32 (128)
T PF00903_consen 2 LDHIAIRVK-DLEKAIDFYTDVLGFRLVEESD 32 (128)
T ss_dssp EEEEEEEES-CHHHHHHHHHHTTTSEEEEEEE
T ss_pred eEEEEEEcC-CHHHHHHHHHHHhCCcEEeeec
Confidence 345565555 34579999975 7999987665
No 179
>PRK00301 aat leucyl/phenylalanyl-tRNA--protein transferase; Reviewed
Probab=53.66 E-value=65 Score=21.55 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=51.2
Q ss_pred hHHHHHhccCCceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccC--CCCCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 41 SFDEELKKKNSGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKEN--YRGQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~--~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
.+.+.......+.+=++.+|++||-..-.. |+.++.-++ ++...-++..+-++.++++..|+.-+- |.-
T Consensus 118 aY~~LH~~G~AHSVE~W~~~~LvGGlYGv~-------iG~~F~GESMFs~~~nASKvAl~~L~~~L~~~g~~liD--~Q~ 188 (233)
T PRK00301 118 AYLELHELGHAHSVEVWQGGELVGGLYGVA-------LGRAFFGESMFSRATDASKVALAALVEHLRRHGFKLID--CQV 188 (233)
T ss_pred HHHHHHHcCceEEEEEEECCEEEeeeeccc-------cCCEEeecccccCCCChHHHHHHHHHHHHHHCCceEEE--ECC
Confidence 333333334445566677999998765431 222222222 355788889999999999999987544 443
Q ss_pred CCchhHhHHHHcCeEEEE
Q 031671 119 LRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 119 ~n~~a~~~y~~~Gf~~~~ 136 (155)
.| .-.+++|-+.+.
T Consensus 189 ~t----~HL~slGa~~i~ 202 (233)
T PRK00301 189 LN----PHLASLGAREIP 202 (233)
T ss_pred CC----HHHHhcCCEEcC
Confidence 33 456677777665
No 180
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=53.55 E-value=48 Score=19.98 Aligned_cols=46 Identities=11% Similarity=0.216 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEec-----------CCchhHhHHHHcCeEEEEEE
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDP-----------LRTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~-----------~n~~a~~~y~~~Gf~~~~~~ 138 (155)
+....+.+.+.+.+.|++.+.+.+.- ..+.+++-+.+.|+++....
T Consensus 55 Aq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~ 111 (132)
T PRK09607 55 AMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIE 111 (132)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 34566777888888899998888755 34568999999999977644
No 181
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=53.40 E-value=44 Score=19.54 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=37.1
Q ss_pred CCChH-HHHHHHHHHHHHhCCccEEEEEEec-----------CCchhHhHHHHcCeEEEEEE
Q 031671 89 GQGHG-EALLEAAIKKCRTRTVLCITLHVDP-----------LRTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 89 ~~Gig-~~ll~~~~~~~~~~g~~~~~~~~~~-----------~n~~a~~~y~~~Gf~~~~~~ 138 (155)
+.-++ ....+.+.+.+.+.|++.+.+.+.- ..+.+++-..+.|++.....
T Consensus 43 ~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~ 104 (114)
T TIGR03628 43 SSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIE 104 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 33444 4566777888888999988888754 44678899999999977644
No 182
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=53.16 E-value=16 Score=20.16 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=15.0
Q ss_pred chhHhHHHH-cCeEEEEEEe
Q 031671 121 TPAVNLYKK-FGFQVDTLIQ 139 (155)
Q Consensus 121 ~~a~~~y~~-~Gf~~~~~~~ 139 (155)
..+.+||++ +||+......
T Consensus 7 ~~a~~FY~~~lg~~~~~~~~ 26 (108)
T PF12681_consen 7 EAAAAFYEDVLGFEVVFDDP 26 (108)
T ss_dssp HHHHHHHHHTTTSEEEEEET
T ss_pred HHHHHHHHHhcCCEEEEeCC
Confidence 468999987 9999887433
No 183
>COG5653 Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane]
Probab=52.57 E-value=90 Score=22.82 Aligned_cols=65 Identities=12% Similarity=0.046 Sum_probs=52.5
Q ss_pred eEEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 53 LLYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 53 ~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
.+....+|.+|+..... ..+++..-.-..++|++-+--=|-.|+-.+++++-..|+..+-+.|..
T Consensus 274 l~gL~~G~~lvAV~~~l-r~~~t~h~~l~a~dpe~~~~SPG~~lf~d~i~~~~~~g~~~~DfgvG~ 338 (406)
T COG5653 274 LFGLHAGGRLVAVHGLL-RQGGTYHAWLGAIDPEFARASPGMLLFLDLIEWACGQGLARFDFGVGD 338 (406)
T ss_pred EEEEeeCCEEEEEEeee-ccCCEEEEEeeccCHHHhhcCchHHHHHHHHHHHhcCCCeEEeecCCC
Confidence 34445578888877764 556677777788999999999999999999999999999888877665
No 184
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=52.01 E-value=17 Score=17.45 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=14.3
Q ss_pred HhccCCceEEEE-ECCeEEEEEEE
Q 031671 46 LKKKNSGLLYIQ-IHGQVVGHVMY 68 (155)
Q Consensus 46 ~~~~~~~~~~~~-~~~~~vG~~~~ 68 (155)
+.+.+...+.+. .+++++|.+..
T Consensus 25 ~~~~~~~~~~V~d~~~~~~G~is~ 48 (57)
T PF00571_consen 25 MRKNGISRLPVVDEDGKLVGIISR 48 (57)
T ss_dssp HHHHTSSEEEEESTTSBEEEEEEH
T ss_pred HHHcCCcEEEEEecCCEEEEEEEH
Confidence 333344444444 58999999864
No 185
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=51.82 E-value=83 Score=22.21 Aligned_cols=52 Identities=19% Similarity=0.167 Sum_probs=35.9
Q ss_pred eEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeE
Q 031671 75 SASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQ 133 (155)
Q Consensus 75 ~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~ 133 (155)
......++|.++ +.+...+.+.+.+.|++.+.++++..--+-+.-=.+++|.
T Consensus 121 ~~rwfQLYvykd-------r~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~ 172 (363)
T KOG0538|consen 121 GIRWFQLYVYKD-------RDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFS 172 (363)
T ss_pred CcEEEEEEecCc-------hHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhccc
Confidence 355568899887 5677777788888899999999887544333333444444
No 186
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=51.79 E-value=46 Score=19.21 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhCCccEEEEEEecCC---chhHhHHHHcCeEEEEEE
Q 031671 95 ALLEAAIKKCRTRTVLCITLHVDPLR---TPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 95 ~ll~~~~~~~~~~g~~~~~~~~~~~n---~~a~~~y~~~Gf~~~~~~ 138 (155)
.+.+.+.+.+.+.|++.+.+.+...+ +.+++.+.+.|+......
T Consensus 47 ~~a~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~I~ 93 (110)
T PF00411_consen 47 QAAEKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVSIT 93 (110)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEEEE
Confidence 55667778888889999988876544 457788888999876544
No 187
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=51.49 E-value=33 Score=21.48 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=24.4
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEe
Q 031671 84 KENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 84 ~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 139 (155)
.+++|.-|+|.++|+. .|++++.+-+ +|+.-..-.+..|-++++..+
T Consensus 122 ~~d~R~ygigaqIL~d-------LGV~~~rLLt--nnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 122 PEDLRDYGIGAQILRD-------LGVKKMRLLT--NNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp -S----THHHHHHHHH-------TT--SEEEE---S-HHHHHHHHHTT--EEEEE-
T ss_pred ccccccHHHHHHHHHH-------cCCCEEEECC--CChhHHHHHhcCCCEEEEEec
Confidence 4556666666665543 4777776652 356777888999998887653
No 188
>PF13530 SCP2_2: Sterol carrier protein domain; PDB: 3SXN_C 3N7Z_A 3RYO_B 3R1K_A 3UY5_A 2HV2_F 2I00_D 2OZG_A.
Probab=51.07 E-value=56 Score=21.31 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=33.9
Q ss_pred ceEEEEECCeEEEEEEEEecC----CCeEEEEEE-EEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEE
Q 031671 52 GLLYIQIHGQVVGHVMYAWPT----SLSASITKL-AVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHV 116 (155)
Q Consensus 52 ~~~~~~~~~~~vG~~~~~~~~----~~~~~i~~~-~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~ 116 (155)
..++...+|++.||+.+.... .+...+..+ +.+|+- -+.|++.+..+.. .+..+.+..
T Consensus 26 ~~~~~~~~g~~~GY~~y~~~~~~~~~~~l~V~El~~~~~~A-----~~aLl~fl~~h~~--~~~~v~~~~ 88 (218)
T PF13530_consen 26 YAVYYDEDGEPDGYVIYRFKDDWEPGGTLEVRELVALDPEA-----YRALLAFLASHRD--QVDEVEWNR 88 (218)
T ss_dssp EEEEEECTSEEEEEEEEEEET-SSSTTEEEEEEEEESSHHH-----HHHHHHHHHTCCT--TESEEEEEE
T ss_pred EEEEECCCCCeeEEEEEEEcccCCCCceEEEEEEEeCCHHH-----HHHHHHHHHhhhC--cceEEEEEc
Confidence 344444599999999998655 256777664 555532 2345555444322 356676654
No 189
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=50.88 E-value=59 Score=21.00 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=34.9
Q ss_pred CeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCch-hHhHHHH
Q 031671 60 GQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTP-AVNLYKK 129 (155)
Q Consensus 60 ~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~-a~~~y~~ 129 (155)
|.-|+||.+....+..+.-+.+-||.+ ..-.+.+.|++.|++.+.+.....-.+ ++=+|.+
T Consensus 83 g~dV~FcaLgTTRgkaGadgfykvDhD---------yvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k 144 (238)
T KOG4039|consen 83 GPDVLFCALGTTRGKAGADGFYKVDHD---------YVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMK 144 (238)
T ss_pred CCceEEEeecccccccccCceEeechH---------HHHHHHHHHHhCCCeEEEEEeccCCCcccceeeee
Confidence 445677766533333333334455544 455667788899999988875544333 4334444
No 190
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=50.32 E-value=72 Score=21.42 Aligned_cols=51 Identities=16% Similarity=0.288 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecCC-chhHhHHHHcCeEEEEEEecccc
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPLR-TPAVNLYKKFGFQVDTLIQGFYS 143 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~n-~~a~~~y~~~Gf~~~~~~~~~~~ 143 (155)
|+.|+.+-++.+.+.|++.+.+.+...+ .-...++.++.|...-.....|.
T Consensus 30 gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~~~~~iv~N~~y~ 81 (239)
T COG1213 30 GREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYPFNAKIVINSDYE 81 (239)
T ss_pred CeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCCcceEEEeCCCcc
Confidence 7788999999999999999988884444 44566778889854443333333
No 191
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=49.51 E-value=9.6 Score=22.60 Aligned_cols=27 Identities=15% Similarity=0.364 Sum_probs=18.1
Q ss_pred EEEEEecCC-chhHhHHHHcCeEEEEEE
Q 031671 112 ITLHVDPLR-TPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 112 ~~~~~~~~n-~~a~~~y~~~Gf~~~~~~ 138 (155)
+.+.....+ +.+.+||+++||+.....
T Consensus 5 IFvNLPVkDL~~S~~Fy~alGfk~Npq~ 32 (133)
T COG3607 5 IFVNLPVKDLEASKAFYTALGFKFNPQF 32 (133)
T ss_pred EEEecchhhHHHHHHHHHHhCcccCCCc
Confidence 344433333 468999999999976544
No 192
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=48.58 E-value=52 Score=18.96 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=23.0
Q ss_pred EccCCCCCChHHHHHHHHHHHHHhC-CccEEEEEEecCCchhHhH---HHHcCeEEEEEE
Q 031671 83 VKENYRGQGHGEALLEAAIKKCRTR-TVLCITLHVDPLRTPAVNL---YKKFGFQVDTLI 138 (155)
Q Consensus 83 v~~~~r~~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n~~a~~~---y~~~Gf~~~~~~ 138 (155)
+.+...++| -+.-+-.+++.|.+. ++..+.+.+..+......+ +.=+||+.+.--
T Consensus 30 ip~~~~~~~-~K~~lvaLLElAee~L~c~~vvic~~k~~~d~~~Llr~l~~vGF~lv~~~ 88 (108)
T PF02100_consen 30 IPSSALGQG-SKESLVALLELAEEKLGCSHVVICLDKNRPDRASLLRTLMWVGFELVTPG 88 (108)
T ss_dssp -SS---SS---SHHHHHHHHHHHHHH----EEEEE---SS-HHHHHHHHTTT--EEE---
T ss_pred ECCcccccc-cHHHHHHHHHHhcCcCCCCEEEEEEECCchhHHHhhhhcEeeccEecCCC
Confidence 344444444 455666777788754 8999998888766554333 445688887633
No 193
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=48.28 E-value=46 Score=22.85 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHhCCccEEEEEEecCC-----------chhHhHHHHcCeE
Q 031671 92 HGEALLEAAIKKCRTRTVLCITLHVDPLR-----------TPAVNLYKKFGFQ 133 (155)
Q Consensus 92 ig~~ll~~~~~~~~~~g~~~~~~~~~~~n-----------~~a~~~y~~~Gf~ 133 (155)
....-+..+.++++++|+. |.+.+.... ..+.+.|++.|-.
T Consensus 70 ~~~~dl~elv~Ya~~KgVg-i~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~ 121 (273)
T PF10566_consen 70 IPDFDLPELVDYAKEKGVG-IWLWYHSETGGNVANLEKQLDEAFKLYAKWGVK 121 (273)
T ss_dssp -TT--HHHHHHHHHHTT-E-EEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEE
T ss_pred CCccCHHHHHHHHHHcCCC-EEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCC
Confidence 3446677778888887765 334444333 4556677777765
No 194
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=47.60 E-value=29 Score=20.15 Aligned_cols=28 Identities=11% Similarity=0.050 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHHHHHhCCcc---EEEEEEec
Q 031671 91 GHGEALLEAAIKKCRTRTVL---CITLHVDP 118 (155)
Q Consensus 91 Gig~~ll~~~~~~~~~~g~~---~~~~~~~~ 118 (155)
+|...+++.+.+.|+++|.+ ++.+.+..
T Consensus 5 si~~~iv~~v~~~a~~~~~~~V~~V~l~iG~ 35 (114)
T PRK03681 5 TLCQRALELIEQQAAKHGAKRVTGVWLKIGA 35 (114)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEEEEcC
Confidence 67889999999999988654 45555443
No 195
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=47.57 E-value=30 Score=19.68 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=19.2
Q ss_pred ccEEEEEEecCCchhHhHHHH-cCeEEEEEE
Q 031671 109 VLCITLHVDPLRTPAVNLYKK-FGFQVDTLI 138 (155)
Q Consensus 109 ~~~~~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 138 (155)
+..+.+.|. +=..+.+||.+ +||+.....
T Consensus 5 l~hv~l~v~-Dl~~s~~FY~~~lG~~~~~~~ 34 (122)
T cd07265 5 PGHVQLRVL-DLEEAIKHYREVLGLDEVGRD 34 (122)
T ss_pred EeEEEEEeC-CHHHHHHHHHhccCCEeeeec
Confidence 344555544 34579999975 899986543
No 196
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=47.36 E-value=26 Score=19.71 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=20.3
Q ss_pred ccEEEEEEecCCchhHhHHHH-cCeEEEEEE
Q 031671 109 VLCITLHVDPLRTPAVNLYKK-FGFQVDTLI 138 (155)
Q Consensus 109 ~~~~~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 138 (155)
+..+.+.|. +-..+.+||++ +||+.....
T Consensus 4 l~hi~l~v~-d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 4 IDHVVLTVA-DIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred cceEEEEec-CHHHHHHHHHHHhCceeeccc
Confidence 445666554 45679999988 899987543
No 197
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=46.52 E-value=38 Score=18.99 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=20.3
Q ss_pred CccEEEEEEecCCchhHhHHH-HcCeEEEEE
Q 031671 108 TVLCITLHVDPLRTPAVNLYK-KFGFQVDTL 137 (155)
Q Consensus 108 g~~~~~~~~~~~n~~a~~~y~-~~Gf~~~~~ 137 (155)
++..+.+.|. +=..+.+||. .+||+....
T Consensus 3 ~~~hi~l~v~-d~~~a~~fy~~~lG~~~~~~ 32 (125)
T cd08352 3 GIHHVAIICS-DYEKSKEFYVEILGFKVIRE 32 (125)
T ss_pred ccceEEEEcC-CHHHHHHHHHHhcCCEEeee
Confidence 4556666664 4567899997 599997643
No 198
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=46.39 E-value=1e+02 Score=22.70 Aligned_cols=75 Identities=16% Similarity=0.050 Sum_probs=46.8
Q ss_pred CeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEec----CCchhHhHHH-HcCeEE
Q 031671 60 GQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDP----LRTPAVNLYK-KFGFQV 134 (155)
Q Consensus 60 ~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~----~n~~a~~~y~-~~Gf~~ 134 (155)
..+++...+....+....-..-+-+++||+-=-...|--+++..|+++|+...-+.--+ .+.....+|+ |.||-.
T Consensus 301 ~~i~lAg~l~~~~~~~~~yl~ggs~~~y~~~~~py~lqw~~i~~A~k~Gi~~ynf~GI~~~~d~~~~~yGv~~FK~gFn~ 380 (418)
T COG2348 301 EVIVLAGILFLYYGTEVVYLYGGSSDEYNKFMAPYLLQWEAIKYAKKRGIKWYNFYGIPGDFDESSEDYGVYRFKKGFNG 380 (418)
T ss_pred cceeeeeeEEEEcceEEEEEeccCcHHHHhhchHHHHHHHHHHHHHHcCCceeeecCCCCCCCCCcccchhHHhhhcCCc
Confidence 34555554443334333333556788999877777778889999999999877665222 2233345665 667754
No 199
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=46.01 E-value=52 Score=19.72 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=21.1
Q ss_pred CCCChHHHHHHHHHHHHHhCCccEEE
Q 031671 88 RGQGHGEALLEAAIKKCRTRTVLCIT 113 (155)
Q Consensus 88 r~~Gig~~ll~~~~~~~~~~g~~~~~ 113 (155)
+..++.+.|+..+.+.|++.|++.+.
T Consensus 37 ~hp~L~~Dllge~v~a~h~~Girv~a 62 (132)
T PF14871_consen 37 RHPGLKRDLLGEQVEACHERGIRVPA 62 (132)
T ss_pred CCCCCCcCHHHHHHHHHHHCCCEEEE
Confidence 45566689999999999999987443
No 200
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=45.86 E-value=37 Score=19.82 Aligned_cols=29 Identities=17% Similarity=0.067 Sum_probs=20.4
Q ss_pred CccEEEEEEecCCchhHhHHHH-cCeEEEEE
Q 031671 108 TVLCITLHVDPLRTPAVNLYKK-FGFQVDTL 137 (155)
Q Consensus 108 g~~~~~~~~~~~n~~a~~~y~~-~Gf~~~~~ 137 (155)
++..+.+.|. +-..+++||+. +||.....
T Consensus 4 ~i~hv~l~V~-dl~~s~~FY~~~lG~~~~~~ 33 (131)
T cd08364 4 GLSHITLIVK-DLNKTTAFLQNIFNAREVYS 33 (131)
T ss_pred cEeEEEEEeC-CHHHHHHHHHHHhCCeeEEe
Confidence 4566666665 55679999966 89987543
No 201
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=45.59 E-value=40 Score=20.16 Aligned_cols=29 Identities=7% Similarity=0.108 Sum_probs=19.8
Q ss_pred ccEEEEEEecCCchhHhHHHH-cCeEEEEEE
Q 031671 109 VLCITLHVDPLRTPAVNLYKK-FGFQVDTLI 138 (155)
Q Consensus 109 ~~~~~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 138 (155)
+..+.+.|. +=.++.+||++ +||++....
T Consensus 7 l~Hv~l~v~-Dle~s~~FY~~vLGf~~~~~~ 36 (143)
T cd07243 7 LDHCLLTGE-DIAETTRFFTDVLDFYLAERV 36 (143)
T ss_pred eCEEEEecC-CHHHHHHHHHHhcCCEEEEEE
Confidence 445666555 33579999976 899976554
No 202
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=44.96 E-value=44 Score=19.09 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=19.9
Q ss_pred ccEEEEEEecCCchhHhHHHHc----CeEEEEEE
Q 031671 109 VLCITLHVDPLRTPAVNLYKKF----GFQVDTLI 138 (155)
Q Consensus 109 ~~~~~~~~~~~n~~a~~~y~~~----Gf~~~~~~ 138 (155)
+..+.+.+. +=..+.+||++. ||+.....
T Consensus 2 i~Hv~i~v~-d~~~~~~Fy~~~l~~~G~~~~~~~ 34 (128)
T cd07242 2 IHHVELTVR-DLERSRAFYDWLLGLLGFEEVKEW 34 (128)
T ss_pred CceEEEEeC-CHHHHHHHHHHHHhhcCCEEEEee
Confidence 445666554 445789999875 99987653
No 203
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=44.77 E-value=46 Score=18.54 Aligned_cols=20 Identities=5% Similarity=0.049 Sum_probs=12.4
Q ss_pred CCceEEEEECCeEEEEEEEE
Q 031671 50 NSGLLYIQIHGQVVGHVMYA 69 (155)
Q Consensus 50 ~~~~~~~~~~~~~vG~~~~~ 69 (155)
.....++..+|+++|++...
T Consensus 90 ~~~lpVvd~~~~~~Gvi~~~ 109 (114)
T cd04619 90 LKNIPVVDENARPLGVLNAR 109 (114)
T ss_pred CCeEEEECCCCcEEEEEEhH
Confidence 33444444467999998753
No 204
>PLN02979 glycolate oxidase
Probab=44.05 E-value=55 Score=23.56 Aligned_cols=48 Identities=23% Similarity=0.236 Sum_probs=33.5
Q ss_pred EEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeE
Q 031671 79 TKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQ 133 (155)
Q Consensus 79 ~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~ 133 (155)
..+|+.++ + .+...+++.|.+.|++.+.++++..-.+-+.--.++||.
T Consensus 125 fQLY~~~D---r----~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~ 172 (366)
T PLN02979 125 FQLYVYKN---R----NVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFT 172 (366)
T ss_pred EEEeecCC---H----HHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCC
Confidence 36676554 2 366677788888899999999987665445444566764
No 205
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=43.69 E-value=58 Score=18.09 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEE
Q 031671 94 EALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVD 135 (155)
Q Consensus 94 ~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~ 135 (155)
-.++..+.+.+++.|..-... ..+....+.++..|+...
T Consensus 61 l~~L~~~~~~~~~~~~~~~l~---~~~~~~~~~l~~~~l~~~ 99 (108)
T TIGR00377 61 LGVLLGRYKQVRRVGGQLVLV---SVSPRVARLLDITGLLRI 99 (108)
T ss_pred HHHHHHHHHHHHhcCCEEEEE---eCCHHHHHHHHHhChhhe
Confidence 345666677777777643322 257788999999999763
No 206
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=43.69 E-value=38 Score=20.29 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=20.9
Q ss_pred CCccEEEEEEecCCchhHhHHHH-cCeEEEEE
Q 031671 107 RTVLCITLHVDPLRTPAVNLYKK-FGFQVDTL 137 (155)
Q Consensus 107 ~g~~~~~~~~~~~n~~a~~~y~~-~Gf~~~~~ 137 (155)
.++..+.+.|. +=..|..||++ +||+....
T Consensus 16 ~~i~hv~l~v~-Dl~~a~~FY~~vLG~~~~~~ 46 (150)
T TIGR00068 16 RRLLHTMLRVG-DLDKSLDFYTEVLGMKLLRK 46 (150)
T ss_pred ceEEEEEEEec-CHHHHHHHHHHhcCCEEEEE
Confidence 35566766665 34579999974 89987553
No 207
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=42.78 E-value=39 Score=19.98 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=20.6
Q ss_pred CChHHHHHHHHHHHHHhCCcc---EEEEEEec
Q 031671 90 QGHGEALLEAAIKKCRTRTVL---CITLHVDP 118 (155)
Q Consensus 90 ~Gig~~ll~~~~~~~~~~g~~---~~~~~~~~ 118 (155)
.+|...+++.+.+.+++.|.+ .+.+.+..
T Consensus 4 ~si~~~il~~v~~~a~~~~~~rV~~V~l~IG~ 35 (124)
T PRK00762 4 LSMACEIVEAVIDTAEKNNATEVTEVTLEIGR 35 (124)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEEEEECC
Confidence 367889999999999887655 44444443
No 208
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=42.73 E-value=68 Score=20.77 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=35.3
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEec
Q 031671 80 KLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQG 140 (155)
Q Consensus 80 ~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~ 140 (155)
.+.-.+++|.-|+|.++++.+ |++++.+-++ |+.-+.-.+..|-++..+...
T Consensus 119 ~lg~~~D~R~ygigAqIL~dL-------GI~~irLLtn--np~K~~~l~~~Gi~vverv~~ 170 (193)
T COG0807 119 ALGFPADERDYGIGAQILKDL-------GIKKIRLLTN--NPRKIYGLEGFGINVVERVPL 170 (193)
T ss_pred hhcCCchHHHHHHHHHHHHHc-------CCcEEEEecC--ChHHHHHHHhCCceEEEEeec
Confidence 345566778888888776544 8888887743 555566667778777776653
No 209
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=42.43 E-value=21 Score=21.32 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=19.8
Q ss_pred EEEEccCCCCCChHHHHHHHHHH
Q 031671 80 KLAVKENYRGQGHGEALLEAAIK 102 (155)
Q Consensus 80 ~~~v~~~~r~~Gig~~ll~~~~~ 102 (155)
-+.+||+++|.-|.+.|.+++-.
T Consensus 59 IILTD~D~~Ge~Irk~l~~~l~~ 81 (127)
T COG1658 59 IILTDPDRKGERIRKKLKEYLPG 81 (127)
T ss_pred EEEeCCCcchHHHHHHHHHHhcc
Confidence 46799999999999988888765
No 210
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=42.43 E-value=44 Score=18.58 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=18.5
Q ss_pred EEEEEEecCCchhHhHHHH-cCeEEEEEE
Q 031671 111 CITLHVDPLRTPAVNLYKK-FGFQVDTLI 138 (155)
Q Consensus 111 ~~~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 138 (155)
.+.+.+. +=..+++||++ +||+.....
T Consensus 5 hv~l~v~-d~~~~~~FY~~~lg~~~~~~~ 32 (117)
T cd07240 5 YAELEVP-DLERALEFYTDVLGLTVLDRD 32 (117)
T ss_pred EEEEecC-CHHHHHHHHHhccCcEEEeec
Confidence 3444433 34579999988 999987654
No 211
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=42.32 E-value=57 Score=17.58 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEE
Q 031671 92 HGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVD 135 (155)
Q Consensus 92 ig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~ 135 (155)
-|-.++..+.+.+.+.|.... +...+....++++..|+...
T Consensus 54 ~g~~~L~~l~~~~~~~g~~v~---i~~~~~~~~~~l~~~gl~~~ 94 (99)
T cd07043 54 SGLGVLLGAYKRARAAGGRLV---LVNVSPAVRRVLELTGLDRL 94 (99)
T ss_pred hhHHHHHHHHHHHHHcCCeEE---EEcCCHHHHHHHHHhCccee
Confidence 344567777777777776533 22356789999999998743
No 212
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=42.10 E-value=62 Score=23.26 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=32.6
Q ss_pred EEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeE
Q 031671 78 ITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQ 133 (155)
Q Consensus 78 i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~ 133 (155)
...+|+ ++ + .+.+.+++.+.+.|++.+.++|+..-.+-+.-=.++||.
T Consensus 119 wfQLY~-~~---r----~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~ 166 (361)
T cd04736 119 WFQLYV-VH---R----ELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFA 166 (361)
T ss_pred EEEEEe-cC---H----HHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCC
Confidence 336777 22 2 456677778888899999999887554444444566775
No 213
>PLN02300 lactoylglutathione lyase
Probab=41.14 E-value=34 Score=23.34 Aligned_cols=38 Identities=11% Similarity=0.225 Sum_probs=24.0
Q ss_pred HHHHHHHhC--CccEEEEEEecCCchhHhHHHH-cCeEEEEE
Q 031671 99 AAIKKCRTR--TVLCITLHVDPLRTPAVNLYKK-FGFQVDTL 137 (155)
Q Consensus 99 ~~~~~~~~~--g~~~~~~~~~~~n~~a~~~y~~-~Gf~~~~~ 137 (155)
.+++|.+.. ++..+.+.|. +=..+++||++ +||+....
T Consensus 13 ~~~~~~~~~i~~l~Hv~l~V~-Dle~s~~FY~~vLG~~~~~~ 53 (286)
T PLN02300 13 DLLEWPKKDKRRMLHVVYRVG-DLDRTIKFYTECLGMKLLRK 53 (286)
T ss_pred hhhcCCccccceEEEEEEEeC-CHHHHHHHHHHhcCCEEEEe
Confidence 344454322 4556666655 34579999975 79998654
No 214
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=41.11 E-value=35 Score=19.44 Aligned_cols=27 Identities=11% Similarity=0.031 Sum_probs=17.9
Q ss_pred cEEEEEEecCCchhHhHHHH-cCeEEEEE
Q 031671 110 LCITLHVDPLRTPAVNLYKK-FGFQVDTL 137 (155)
Q Consensus 110 ~~~~~~~~~~n~~a~~~y~~-~Gf~~~~~ 137 (155)
..+.+.|. +=..|.+||+. +||+....
T Consensus 4 ~~v~l~v~-Dl~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 4 GYLGVESS-DLDAWRRFATDVLGLQVGDR 31 (120)
T ss_pred cEEEEEeC-CHHHHHHHHHhccCceeccC
Confidence 34555555 33569999976 79987543
No 215
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=40.98 E-value=55 Score=18.60 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=18.7
Q ss_pred ccEEEEEEecCCchhHhHHHH-cCeEEEEE
Q 031671 109 VLCITLHVDPLRTPAVNLYKK-FGFQVDTL 137 (155)
Q Consensus 109 ~~~~~~~~~~~n~~a~~~y~~-~Gf~~~~~ 137 (155)
+..+.+.|. +=..+++||++ +||+....
T Consensus 2 i~hv~l~v~-d~~~~~~FY~~vLG~~~~~~ 30 (121)
T cd07244 2 INHITLAVS-DLERSVAFYVDLLGFKLHVR 30 (121)
T ss_pred cceEEEEEC-CHHHHHHHHHHhcCCEEEEe
Confidence 345555554 34569999975 89988654
No 216
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=40.97 E-value=58 Score=19.10 Aligned_cols=36 Identities=11% Similarity=0.227 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHHHHhCCcc---EEEEEEec---CCchhHhH
Q 031671 91 GHGEALLEAAIKKCRTRTVL---CITLHVDP---LRTPAVNL 126 (155)
Q Consensus 91 Gig~~ll~~~~~~~~~~g~~---~~~~~~~~---~n~~a~~~ 126 (155)
.++.+++..++++|++.|.+ .+++.+.. -|+.+.+|
T Consensus 5 Sla~aii~~i~~~A~~~~a~~V~~V~l~IG~ls~v~~~~l~F 46 (115)
T COG0375 5 SLAQAIIELIEEQAEKHGAKRVTAVWLEIGELSCVEPEALRF 46 (115)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEEEEEcceeccCHHHHHH
Confidence 47889999999999999874 44554433 24455554
No 217
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=40.70 E-value=43 Score=19.50 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=20.5
Q ss_pred ChHHHHHHHHHHHHHhCCcc---EEEEEEec
Q 031671 91 GHGEALLEAAIKKCRTRTVL---CITLHVDP 118 (155)
Q Consensus 91 Gig~~ll~~~~~~~~~~g~~---~~~~~~~~ 118 (155)
+|+..+++.+.+.+++.|.+ ++.+.+..
T Consensus 5 sia~~iv~~v~~~a~~~~~~~V~~V~l~iG~ 35 (115)
T TIGR00100 5 SLAEAMLEIVEEQAEKHQAKKVTRVTLEIGE 35 (115)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEEEEcc
Confidence 67889999999999887655 45555443
No 218
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=40.62 E-value=57 Score=19.75 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=20.9
Q ss_pred CccEEEEEEecCCchhHhHHHH-cCeEEEEE
Q 031671 108 TVLCITLHVDPLRTPAVNLYKK-FGFQVDTL 137 (155)
Q Consensus 108 g~~~~~~~~~~~n~~a~~~y~~-~Gf~~~~~ 137 (155)
++..+.+.|. +=.++++||+. +||+....
T Consensus 9 ~l~Hi~l~v~-Dl~~a~~FY~~~LGl~~~~~ 38 (154)
T cd07237 9 GLGHVVLATP-DPDEAHAFYRDVLGFRLSDE 38 (154)
T ss_pred ccCEEEEEeC-CHHHHHHHHHHccCCEEEEE
Confidence 4566766665 45678999976 99997654
No 219
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=40.13 E-value=44 Score=20.59 Aligned_cols=40 Identities=10% Similarity=0.108 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCe
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGF 132 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf 132 (155)
|+.|++++++.+...++..+.+.+...+......+...|.
T Consensus 25 g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~ 64 (186)
T cd04182 25 GKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAGLPV 64 (186)
T ss_pred CeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcCCCe
Confidence 5789999999888877777877765543333333444454
No 220
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=40.06 E-value=48 Score=18.46 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=20.2
Q ss_pred cEEEEEEecCCchhHhHHHH-cCeEEEEEEe
Q 031671 110 LCITLHVDPLRTPAVNLYKK-FGFQVDTLIQ 139 (155)
Q Consensus 110 ~~~~~~~~~~n~~a~~~y~~-~Gf~~~~~~~ 139 (155)
..+.+.|.. =..|+.||+. +||+......
T Consensus 4 ~hv~l~v~d-l~~s~~FY~~~LG~~~~~~~~ 33 (138)
T COG0346 4 HHVTLAVPD-LEASIDFYTDVLGLRLVKDTV 33 (138)
T ss_pred EEEEEeeCC-HhHhHHHHHhhcCCeeeeecc
Confidence 345555543 4679999987 9999877543
No 221
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=39.96 E-value=58 Score=18.81 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=18.5
Q ss_pred EEEEEEecCCchhHhHHHH-cCeEEEEEEe
Q 031671 111 CITLHVDPLRTPAVNLYKK-FGFQVDTLIQ 139 (155)
Q Consensus 111 ~~~~~~~~~n~~a~~~y~~-~Gf~~~~~~~ 139 (155)
.+.+.+. +=..+.+||.+ +||+......
T Consensus 4 hv~l~v~-D~~~s~~FY~~~lG~~~~~~~~ 32 (134)
T cd08348 4 HVVLYVR-DLEAMVRFYRDVLGFTVTDRGP 32 (134)
T ss_pred EEEEEec-CHHHHHHHHHHhcCCEEEeecc
Confidence 4444444 34578999976 9999876543
No 222
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=39.51 E-value=46 Score=19.30 Aligned_cols=29 Identities=10% Similarity=0.156 Sum_probs=20.7
Q ss_pred CChHHHHHHHHHHHHHhCCcc---EEEEEEec
Q 031671 90 QGHGEALLEAAIKKCRTRTVL---CITLHVDP 118 (155)
Q Consensus 90 ~Gig~~ll~~~~~~~~~~g~~---~~~~~~~~ 118 (155)
.+|...+++.+.+.+++.|.+ ++.+.+..
T Consensus 4 lsi~~~iv~~v~~~a~~~~~~rV~~V~l~iG~ 35 (113)
T PRK12380 4 LSLCQSAVEIIQRQAEQHDVKRVTAVWLEIGA 35 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcC
Confidence 367889999999999887644 55555443
No 223
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=39.07 E-value=25 Score=19.58 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=13.5
Q ss_pred CchhHhHHHH-cCeEEEE
Q 031671 120 RTPAVNLYKK-FGFQVDT 136 (155)
Q Consensus 120 n~~a~~~y~~-~Gf~~~~ 136 (155)
=..+..||++ +||+...
T Consensus 11 l~~s~~FY~~~lG~~~~~ 28 (112)
T cd07238 11 PEAAAAFYADVLGLDVVM 28 (112)
T ss_pred HHHHHHHHHHhcCceEEE
Confidence 3468999987 9999764
No 224
>PF11633 SUD-M: Single-stranded poly(A) binding domain; InterPro: IPR024375 This domain identifies non-structural protein 3 (Nsp3). It is found in human SARS coronavirus polyprotein 1a and 1ab, and in related coronavirus polyproteins [].; PDB: 2KQV_A 2W2G_A 2WCT_D 2JZE_A 2JZF_A 2RNK_A 2JZD_A.
Probab=38.82 E-value=32 Score=20.73 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEec
Q 031671 97 LEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQG 140 (155)
Q Consensus 97 l~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~ 140 (155)
++.+++++++.|.. +-+-.++.+..++.++-|+.+...+.+
T Consensus 25 ~r~ml~~ak~~g~~---~pvc~D~~A~~k~lkr~gv~~~egl~t 65 (142)
T PF11633_consen 25 FRAMLQHAKETGLL---CPVCIDYPAFCKTLKRKGVDPKEGLQT 65 (142)
T ss_dssp CHHHHHHHHHHT-E---EEEETT-HHHHHHHHHTTS---SEEEE
T ss_pred HHHHHHHHHhcCcE---EEEEeccHHHHHHHhccCcccccceEE
Confidence 45667777777643 334447888999999988887765543
No 225
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=38.33 E-value=75 Score=23.07 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=31.8
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeE
Q 031671 80 KLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQ 133 (155)
Q Consensus 80 ~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~ 133 (155)
.+|+..+ +.+...+++.|...|++.+.++|+..-.+-+.--.++||.
T Consensus 127 QlY~~~D-------r~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~ 173 (381)
T PRK11197 127 QLYVLRD-------RGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMS 173 (381)
T ss_pred EEEecCC-------HHHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCC
Confidence 6666653 2467777888888899999999886543434444556664
No 226
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=38.09 E-value=78 Score=19.03 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=26.0
Q ss_pred EEEccCCCCCChHHHHHHHHHHHHHhC-CccEEEEEEec
Q 031671 81 LAVKENYRGQGHGEALLEAAIKKCRTR-TVLCITLHVDP 118 (155)
Q Consensus 81 ~~v~~~~r~~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~ 118 (155)
+.--..|+|+|+....+...-..+... ....+.+...+
T Consensus 10 LlCmq~y~GkGYS~~FveN~d~I~~rL~~ge~i~lV~g~ 48 (135)
T COG3543 10 LLCMQGYQGKGYSPAFVENYDAIAERLKAGEDIKLVDGP 48 (135)
T ss_pred hheeeecccccCCHHHHHHHHHHHHHhhcCCCeEEEecc
Confidence 344567999999999998888777765 23335554433
No 227
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=37.98 E-value=78 Score=23.03 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=21.7
Q ss_pred CCccEEEEEEecCCchhHhHHHHcCeEEEEEEe
Q 031671 107 RTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 107 ~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 139 (155)
.|++++.+-+ +|..-+.-.+..|.++.+..+
T Consensus 326 LGV~~irLLT--Nnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 326 LGIEKVRLLT--NNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred cCCCEEEECC--CCHHHHHHHHhCCCEEEEEec
Confidence 4677776653 455566777899999987664
No 228
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=37.96 E-value=53 Score=18.60 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=19.1
Q ss_pred cEEEEEEecCCchhHhHHHH-cCeEEEEEE
Q 031671 110 LCITLHVDPLRTPAVNLYKK-FGFQVDTLI 138 (155)
Q Consensus 110 ~~~~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 138 (155)
..+.+.|. +=..+.+||.+ +||+.....
T Consensus 4 ~hi~l~v~-d~~~~~~Fy~~~lG~~~~~~~ 32 (125)
T cd07255 4 GAVTLRVA-DLERSLAFYQDVLGLEVLERT 32 (125)
T ss_pred EEEEEEEC-CHHHHHHHHHhccCcEEEEcC
Confidence 34555554 33568999975 899987653
No 229
>KOG2327 consensus DNA-binding subunit of a DNA-dependent protein kinase (Ku70 autoantigen) [Replication, recombination and repair]
Probab=37.57 E-value=57 Score=25.03 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=41.3
Q ss_pred EEEEEEEEecCCCeEEEEEEEEccCCCCCChHH-HHHHHHHHHHHhCCccEEEEEEecCCc---------------hhHh
Q 031671 62 VVGHVMYAWPTSLSASITKLAVKENYRGQGHGE-ALLEAAIKKCRTRTVLCITLHVDPLRT---------------PAVN 125 (155)
Q Consensus 62 ~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~-~ll~~~~~~~~~~g~~~~~~~~~~~n~---------------~a~~ 125 (155)
++||.....-.....--...++-|+-+ .++|+ ++.+++.+.|..+.--.|.+.....|. ..-.
T Consensus 335 liGFk~~ssl~~~~~i~ps~fi~Pddq-~~iGS~~~f~all~rcl~rdkiaic~~~~r~n~~p~~vAlv~~p~~~~d~~~ 413 (602)
T KOG2327|consen 335 LIGFKSMSSLKREHYIKPSKFIYPDDQ-TIIGSTRLFRALLKRCLARDKIAICWFQSRSNQKPRFVALVLQPQRGQDDSS 413 (602)
T ss_pred EEeeccccccCcccccCchhccCcchh-hccchHHHHHHHHHHHHhhhhhhheeecccccCCcceeeeecCccccccCcc
Confidence 556665442222222333566777765 46666 788888888876643334444443441 1122
Q ss_pred HHHHcCeEEEE
Q 031671 126 LYKKFGFQVDT 136 (155)
Q Consensus 126 ~y~~~Gf~~~~ 136 (155)
....+||..++
T Consensus 414 ~~l~~GF~LV~ 424 (602)
T KOG2327|consen 414 ESLPCGFQLVG 424 (602)
T ss_pred cccccceEEEE
Confidence 34577999987
No 230
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=37.51 E-value=55 Score=18.37 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=17.4
Q ss_pred EEEEEEecCCchhHhHHHH-cCeEEEEE
Q 031671 111 CITLHVDPLRTPAVNLYKK-FGFQVDTL 137 (155)
Q Consensus 111 ~~~~~~~~~n~~a~~~y~~-~Gf~~~~~ 137 (155)
.+.+.|. +=..+++||++ +||+....
T Consensus 4 Hi~l~v~-dl~~s~~FY~~~lg~~~~~~ 30 (125)
T cd07241 4 HVAIWTK-DLERMKAFYVTYFGATSNEK 30 (125)
T ss_pred EEEEEec-CHHHHHHHHHHHhCCEeece
Confidence 4555554 34579999976 79987543
No 231
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=37.46 E-value=73 Score=20.55 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEE
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQV 134 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~ 134 (155)
|+-|+.+.++.+.+.++..+.+.+............+.|.+.
T Consensus 25 gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~~~~~~ 66 (229)
T cd02540 25 GKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALANPNVEF 66 (229)
T ss_pred CccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCCCCcEE
Confidence 578999999999988888877776654333344444445543
No 232
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=37.43 E-value=1.1e+02 Score=19.87 Aligned_cols=48 Identities=15% Similarity=0.161 Sum_probs=34.1
Q ss_pred EccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEe
Q 031671 83 VKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 83 v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 139 (155)
..+++|.-|+|.++|+. .|++++.+-+. |..-+.-....|.++++..+
T Consensus 123 ~~~d~R~yGiGAQIL~d-------LGV~~mrLLtn--~~~k~~~L~g~GleV~~~~~ 170 (197)
T PRK00393 123 FAADERDYTLAADMLKA-------LGVKKVRLLTN--NPKKVEALTEAGINIVERVP 170 (197)
T ss_pred CCccceehhHHHHHHHH-------cCCCEEEECCC--CHHHHHHHHhCCCEEEEEec
Confidence 35568999999988764 48888876633 34355566788999887653
No 233
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=37.17 E-value=14 Score=19.91 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHc
Q 031671 95 ALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKF 130 (155)
Q Consensus 95 ~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~ 130 (155)
.||+.+.+.-+..-=-.+++.+.+.+..|+..|...
T Consensus 3 ~LL~~I~~~~Fa~~dl~LyLDTHP~d~~Al~~y~~~ 38 (78)
T PF12652_consen 3 ELLREIQEVSFAVVDLNLYLDTHPDDQEALEYYNEY 38 (78)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 345554444443311247889999999998888653
No 234
>CHL00041 rps11 ribosomal protein S11
Probab=37.16 E-value=88 Score=18.31 Aligned_cols=57 Identities=14% Similarity=0.227 Sum_probs=38.4
Q ss_pred EEccCCCCCChHH-HHHHHHHHHHHhCCccEEEEEEecC---CchhHhHHHHcCeEEEEEE
Q 031671 82 AVKENYRGQGHGE-ALLEAAIKKCRTRTVLCITLHVDPL---RTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 82 ~v~~~~r~~Gig~-~ll~~~~~~~~~~g~~~~~~~~~~~---n~~a~~~y~~~Gf~~~~~~ 138 (155)
...-..++.-++. .+.+.+.+.+.+.|++.+.+.+.-. .+.+++-+.+.|++.....
T Consensus 46 gfKg~rK~T~~Aa~~~a~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~I~ 106 (116)
T CHL00041 46 GFKGARKGTPFAAQTAAENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSSIR 106 (116)
T ss_pred eeCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEE
Confidence 3444444444444 4556777888888999998887544 4567778888899876644
No 235
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=37.09 E-value=87 Score=21.09 Aligned_cols=44 Identities=16% Similarity=0.354 Sum_probs=29.9
Q ss_pred CCChHHHHHHHHHHHHH-hCCccEEEEEEecCCchhHhHHHHcCeE
Q 031671 89 GQGHGEALLEAAIKKCR-TRTVLCITLHVDPLRTPAVNLYKKFGFQ 133 (155)
Q Consensus 89 ~~Gig~~ll~~~~~~~~-~~g~~~~~~~~~~~n~~a~~~y~~~Gf~ 133 (155)
.-|+|+..+...+..+. ..|.+.+.+.+++.|....++ ..++-+
T Consensus 11 KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~-~~l~~~ 55 (241)
T PRK13886 11 KGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGY-KALNVR 55 (241)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhH-HhcCCc
Confidence 34999998877766655 458888888888888644443 344433
No 236
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=37.09 E-value=1.1e+02 Score=21.83 Aligned_cols=54 Identities=9% Similarity=0.127 Sum_probs=35.3
Q ss_pred EEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCch-hHhHHHHcCeEEEEEEe
Q 031671 78 ITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTP-AVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 78 i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~-a~~~y~~~Gf~~~~~~~ 139 (155)
...+.+||.+ .|+...+++.+.+ . -.-+++.|++...+ -.+.+.+ ||+......
T Consensus 289 ~D~v~lDPPR--~G~~~~~l~~l~~-~----~~ivyvSC~p~tlarDl~~L~~-gY~l~~v~~ 343 (362)
T PRK05031 289 FSTIFVDPPR--AGLDDETLKLVQA-Y----ERILYISCNPETLCENLETLSQ-THKVERFAL 343 (362)
T ss_pred CCEEEECCCC--CCCcHHHHHHHHc-c----CCEEEEEeCHHHHHHHHHHHcC-CcEEEEEEE
Confidence 3568999994 6899988888866 1 23577777763321 1344444 999876544
No 237
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=36.87 E-value=38 Score=18.61 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=15.0
Q ss_pred CchhHhHHHH-cCeEEEEEE
Q 031671 120 RTPAVNLYKK-FGFQVDTLI 138 (155)
Q Consensus 120 n~~a~~~y~~-~Gf~~~~~~ 138 (155)
=..+.+||++ +||+.....
T Consensus 9 ~~~s~~FY~~~lg~~~~~~~ 28 (112)
T cd08349 9 IERSLAFYRDVLGFEVDWEH 28 (112)
T ss_pred HHHHHHHHHhccCeEEEEEc
Confidence 3569999998 999987654
No 238
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=36.78 E-value=60 Score=18.33 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=16.2
Q ss_pred EEEEEecCCchhHhHHHH-cCeEEEE
Q 031671 112 ITLHVDPLRTPAVNLYKK-FGFQVDT 136 (155)
Q Consensus 112 ~~~~~~~~n~~a~~~y~~-~Gf~~~~ 136 (155)
+.+.|. +=..+.+||++ +||+...
T Consensus 4 ~~l~v~-D~~~s~~FY~~~lG~~~~~ 28 (125)
T cd07264 4 TIIYVE-DVEKTLEFYERAFGFERRF 28 (125)
T ss_pred EEEEEc-CHHHHHHHHHHhhCCeEEe
Confidence 334444 44579999977 7998754
No 239
>PRK11478 putative lyase; Provisional
Probab=36.50 E-value=42 Score=19.20 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=18.3
Q ss_pred ccEEEEEEecCCchhHhHHH-HcCeEEEE
Q 031671 109 VLCITLHVDPLRTPAVNLYK-KFGFQVDT 136 (155)
Q Consensus 109 ~~~~~~~~~~~n~~a~~~y~-~~Gf~~~~ 136 (155)
+..+.+.|. +=..+.+||. .+||+...
T Consensus 7 i~hv~l~v~-D~~~a~~FY~~~LG~~~~~ 34 (129)
T PRK11478 7 VHHIAIIAT-DYAVSKAFYCDILGFTLQS 34 (129)
T ss_pred ecEEEEEcC-CHHHHHHHHHHHhCCEecc
Confidence 445666554 4457899996 58999753
No 240
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=36.24 E-value=45 Score=20.13 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEE
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~ 136 (155)
|+.|+.++++.+.+.+++.+.+.+.. ......+.+.+.+...
T Consensus 23 g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~~~~~v~ 64 (160)
T PF12804_consen 23 GKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLERYGIKVVV 64 (160)
T ss_dssp TEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTTTSEEEE
T ss_pred CccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhccCceEEE
Confidence 45688999999998888888887665 2333445667766654
No 241
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=36.22 E-value=48 Score=19.19 Aligned_cols=28 Identities=7% Similarity=0.168 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHHHHHhCCcc---EEEEEEec
Q 031671 91 GHGEALLEAAIKKCRTRTVL---CITLHVDP 118 (155)
Q Consensus 91 Gig~~ll~~~~~~~~~~g~~---~~~~~~~~ 118 (155)
+|+..+++.+.+.+.+++.+ ++.+.+..
T Consensus 5 si~~~iv~~v~~~a~~~~~~kV~~V~l~iG~ 35 (113)
T PF01155_consen 5 SIAQSIVEIVEEEAEENGAKKVTKVRLEIGE 35 (113)
T ss_dssp HHHHHHHHHHHHHHHCTT-SEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEEEECC
Confidence 57888999999999977654 45555444
No 242
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.15 E-value=52 Score=21.95 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=28.2
Q ss_pred cCCCCCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 85 ENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 85 ~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
|...|.--|..-+..+.++|.+.|++.+.+++..
T Consensus 27 ~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS 60 (230)
T PRK14837 27 SFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFS 60 (230)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 4455777789999999999999999999888654
No 243
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=36.12 E-value=1.4e+02 Score=20.45 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=41.0
Q ss_pred CCeEEEEEEEEccCCCC--CChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEec
Q 031671 73 SLSASITKLAVKENYRG--QGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQG 140 (155)
Q Consensus 73 ~~~~~i~~~~v~~~~r~--~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~ 140 (155)
+....|.++.-++.+-. ..+-.+.+..=+..+++.|+..+.+.-.+..+....+.-++|+-+..+...
T Consensus 12 Gk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 12 GKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp TEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-
T ss_pred CEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccc
Confidence 44556666666665543 345567777778889999999999865555566677778999998876643
No 244
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=36.01 E-value=52 Score=21.87 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=28.4
Q ss_pred cCCCCCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 85 ENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 85 ~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
|...|.--|..-+..+.++|.+.|++.+.+++..
T Consensus 20 ~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFS 53 (226)
T TIGR00055 20 PRAYGHKAGVKSLRRILRWCANLGVECLTLYAFS 53 (226)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 4455777889999999999999999999888654
No 245
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=35.98 E-value=1.1e+02 Score=19.59 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=33.1
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEE
Q 031671 84 KENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 84 ~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~ 138 (155)
.+++|.-|+|.++|..+ |++.+.+-+. |..-+...+..|-++++..
T Consensus 121 ~~d~R~yGiGAQIL~dL-------GV~~~rLLtn--~~~k~~~L~g~gleVv~~~ 166 (191)
T TIGR00505 121 PADERDFSLCADILEDL-------GVKKVRLLTN--NPKKIEILKKAGINIVERV 166 (191)
T ss_pred cccceehhHHHHHHHHc-------CCCEEEECCC--CHHHHHHHHhCCCEEEEEe
Confidence 44589999999887654 7888877643 3445666678888888665
No 246
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=35.96 E-value=57 Score=18.50 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeE
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQ 133 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~ 133 (155)
|-.++..+.+.++.+|..-+.+. .+....+.+++.||.
T Consensus 65 gi~~L~~~~~~~~~~g~~~~l~~---~~~~v~~~l~~~~~~ 102 (117)
T PF01740_consen 65 GIQALVDIIKELRRRGVQLVLVG---LNPDVRRILERSGLI 102 (117)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEES---HHHHHHHHHHHTTGH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEE---CCHHHHHHHHHcCCC
Confidence 44577778888888887644443 456688889999986
No 247
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=35.75 E-value=40 Score=22.05 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEE
Q 031671 90 QGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 90 ~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~ 136 (155)
+|||..-...++-+|..+. + .. -+.-+.+++.++|+....
T Consensus 121 KGIG~ETaDsILlYa~~rp---~-FV---vD~Yt~R~l~rlg~i~~k 160 (215)
T COG2231 121 KGIGKETADSILLYALDRP---V-FV---VDKYTRRLLSRLGGIEEK 160 (215)
T ss_pred CCcchhhHHHHHHHHhcCc---c-cc---hhHHHHHHHHHhcccccc
Confidence 7999999999999998863 1 22 344588999999998763
No 248
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=35.66 E-value=53 Score=21.23 Aligned_cols=27 Identities=7% Similarity=-0.014 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecC
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPL 119 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~ 119 (155)
|+.|+.++++.+.+.|++.+.+.+...
T Consensus 30 g~piI~~~l~~l~~~Gi~~I~iv~~~~ 56 (217)
T cd04197 30 NVPLIDYTLEFLALNGVEEVFVFCCSH 56 (217)
T ss_pred CEehHHHHHHHHHHCCCCeEEEEeCCC
Confidence 456899999999989999888877743
No 249
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=35.59 E-value=90 Score=17.97 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=39.0
Q ss_pred EEccCCCCCChHHH-HHHHHHHHHHhCCccEEEEEEecC---CchhHhHHHHcCeEEEEEE
Q 031671 82 AVKENYRGQGHGEA-LLEAAIKKCRTRTVLCITLHVDPL---RTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 82 ~v~~~~r~~Gig~~-ll~~~~~~~~~~g~~~~~~~~~~~---n~~a~~~y~~~Gf~~~~~~ 138 (155)
...-..++.-++.. +.+.+.+.+.+.|++.+.+.+... .+.+++.+.+.|++.....
T Consensus 33 gfkg~rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~I~ 93 (108)
T TIGR03632 33 GFKGSKKSTPYAAQLAAEDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTSIK 93 (108)
T ss_pred eeCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEE
Confidence 34444455566654 445567778888999999887554 4567888888899876543
No 250
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=35.14 E-value=59 Score=18.31 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=13.9
Q ss_pred CCchhHhHHHH-cCeEEEEE
Q 031671 119 LRTPAVNLYKK-FGFQVDTL 137 (155)
Q Consensus 119 ~n~~a~~~y~~-~Gf~~~~~ 137 (155)
+=..|++||++ +||++...
T Consensus 9 Dl~~s~~FY~~~lG~~~~~~ 28 (125)
T cd08357 9 DLEAARAFYGDVLGCKEGRS 28 (125)
T ss_pred CHHHHHHHHHHhcCCEEeec
Confidence 34578999975 89988643
No 251
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=34.99 E-value=41 Score=18.63 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=15.6
Q ss_pred CCchhHhHHHH-cCeEEEEEE
Q 031671 119 LRTPAVNLYKK-FGFQVDTLI 138 (155)
Q Consensus 119 ~n~~a~~~y~~-~Gf~~~~~~ 138 (155)
+-.++.+||.+ +||+.....
T Consensus 8 d~~~~~~fY~~~lG~~~~~~~ 28 (119)
T cd07263 8 DQDKALAFYTEKLGFEVREDV 28 (119)
T ss_pred CHHHHHHHHHhccCeEEEEee
Confidence 34568999987 999987654
No 252
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=34.89 E-value=91 Score=23.93 Aligned_cols=33 Identities=9% Similarity=0.094 Sum_probs=23.9
Q ss_pred HhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEe
Q 031671 105 RTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 105 ~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 139 (155)
+..|++++.+-+ +|..-+.-.+.+|.+++++.+
T Consensus 347 ~dLGI~kIrLLT--NNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 347 NDLGIKRLRLIT--NNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHcCCCEEEECC--CCHHHHHHHHhCCCEEEEEec
Confidence 344778777653 466677778899999987764
No 253
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=34.88 E-value=90 Score=22.54 Aligned_cols=49 Identities=22% Similarity=0.231 Sum_probs=34.4
Q ss_pred EEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeE
Q 031671 78 ITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQ 133 (155)
Q Consensus 78 i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~ 133 (155)
...+|+.++ +.+...+++.|.+.|++.+.++++..-.+-+.-=.++||.
T Consensus 125 wfQlY~~~D-------r~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~ 173 (367)
T PLN02493 125 FFQLYVYKN-------RNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFT 173 (367)
T ss_pred EEEEeecCC-------HHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCC
Confidence 346777665 3577788888888999999999887655444444456664
No 254
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=34.49 E-value=1.1e+02 Score=20.29 Aligned_cols=45 Identities=9% Similarity=0.147 Sum_probs=28.6
Q ss_pred CChHHHHH-HHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEE
Q 031671 90 QGHGEALL-EAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQV 134 (155)
Q Consensus 90 ~Gig~~ll-~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~ 134 (155)
.|-|+..+ .++.....+.|.+.+++.....-...++...++||..
T Consensus 33 ~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~ 78 (230)
T PRK08533 33 ESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDI 78 (230)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCch
Confidence 47788777 3444444456767777775555555667777888843
No 255
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=33.84 E-value=57 Score=15.76 Aligned_cols=16 Identities=25% Similarity=0.355 Sum_probs=12.0
Q ss_pred hhHhHHHHcCeEEEEE
Q 031671 122 PAVNLYKKFGFQVDTL 137 (155)
Q Consensus 122 ~a~~~y~~~Gf~~~~~ 137 (155)
..+++++++||+....
T Consensus 3 el~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 3 ELIKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHCCCEEecC
Confidence 3678999999998864
No 256
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=33.27 E-value=54 Score=22.15 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=28.3
Q ss_pred CCCCCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 86 NYRGQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 86 ~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
...|.-.|..-+..++++|.+.|++.+.+++..
T Consensus 42 ~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS 74 (249)
T PRK14831 42 RIMGHRRGVDALKDLLRCCKDWGIGALTAYAFS 74 (249)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecc
Confidence 345777899999999999999999999998766
No 257
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=33.17 E-value=51 Score=18.57 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=18.7
Q ss_pred ccEEEEEEecCCchhHhHHHH-cCeEEEEE
Q 031671 109 VLCITLHVDPLRTPAVNLYKK-FGFQVDTL 137 (155)
Q Consensus 109 ~~~~~~~~~~~n~~a~~~y~~-~Gf~~~~~ 137 (155)
+..+.+.|. +=..+.+||.+ +||+....
T Consensus 5 i~hi~l~v~-d~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 5 LGHVELRVT-DLEKSREFYVDVLGLVETEE 33 (121)
T ss_pred eeEEEEEcC-CHHHHHHHHHhccCCEEecc
Confidence 345555554 34569999976 89987643
No 258
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=32.95 E-value=68 Score=18.77 Aligned_cols=27 Identities=4% Similarity=0.092 Sum_probs=18.8
Q ss_pred ChHHHHHHHHHHHHHhCCcc---EEEEEEe
Q 031671 91 GHGEALLEAAIKKCRTRTVL---CITLHVD 117 (155)
Q Consensus 91 Gig~~ll~~~~~~~~~~g~~---~~~~~~~ 117 (155)
+|+..+++.+.+.+++.|.+ ++.+.+.
T Consensus 5 si~~~il~~v~~~a~~~~~~~V~~V~l~IG 34 (117)
T PRK00564 5 SVVSSLIALCEEHAKKNQAHKIEKVVVGIG 34 (117)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEEEEc
Confidence 57788888888888877544 4444444
No 259
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=32.79 E-value=1.3e+02 Score=22.32 Aligned_cols=54 Identities=13% Similarity=0.252 Sum_probs=37.2
Q ss_pred EEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCc-hhHhHHHHcCeEEEE
Q 031671 78 ITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRT-PAVNLYKKFGFQVDT 136 (155)
Q Consensus 78 i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~-~a~~~y~~~Gf~~~~ 136 (155)
...+.|||. |.|.++.+++.+.+..... -++++|++..- +=.+.+.+.||+...
T Consensus 363 ~d~VvvDPP--R~G~~~~~lk~l~~~~p~~---IvYVSCNP~TlaRDl~~L~~~gy~i~~ 417 (432)
T COG2265 363 PDVVVVDPP--RAGADREVLKQLAKLKPKR---IVYVSCNPATLARDLAILASTGYEIER 417 (432)
T ss_pred CCEEEECCC--CCCCCHHHHHHHHhcCCCc---EEEEeCCHHHHHHHHHHHHhCCeEEEE
Confidence 356889997 7899998888887665443 56777555322 135678899997544
No 260
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=32.78 E-value=91 Score=17.18 Aligned_cols=39 Identities=8% Similarity=0.031 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEE
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQV 134 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~ 134 (155)
|-.++..+.+.+++.|.+-.... .+....+.+++.|+..
T Consensus 56 gl~~L~~l~~~~~~~g~~l~l~~---~~~~v~~~l~~~gl~~ 94 (100)
T cd06844 56 GTGVLLERSRLAEAVGGQFVLTG---ISPAVRITLTESGLDK 94 (100)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEC---CCHHHHHHHHHhCchh
Confidence 44466667777777776543333 5677889999999864
No 261
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=32.56 E-value=1.2e+02 Score=22.05 Aligned_cols=32 Identities=9% Similarity=-0.120 Sum_probs=21.9
Q ss_pred HHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEE
Q 031671 104 CRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 104 ~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~ 138 (155)
.+..|++++.+- +|+.-+.-.+..|.+++++.
T Consensus 334 Lr~LGV~kirLL---nNP~K~~~L~~~GIeV~~~v 365 (369)
T PRK12485 334 LQDLGVGKLRHL---GPPLKYAGLTGYDLEVVESI 365 (369)
T ss_pred HHHcCCCEEEEC---CCchhhhhhhhCCcEEEEEe
Confidence 345588888877 45555566678888887654
No 262
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=32.09 E-value=1.1e+02 Score=22.31 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCe
Q 031671 95 ALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGF 132 (155)
Q Consensus 95 ~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf 132 (155)
.+...+++.+.+.|++.+.++|+..-.+-+.--.+.||
T Consensus 151 ~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~ 188 (383)
T cd03332 151 DLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGY 188 (383)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCC
Confidence 46667777888889999999988755544555556666
No 263
>PF03588 Leu_Phe_trans: Leucyl/phenylalanyl-tRNA protein transferase; InterPro: IPR004616 Leucyl/phenylalanyl-tRNA--protein transferase 2.3.2.6 from EC transfers a Leu or Phe to the amino end of certain proteins to enable degradation. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway.; GO: 0008914 leucyltransferase activity, 0030163 protein catabolic process; PDB: 2Z3L_A 2Z3O_A 2Z3P_A 2DPT_B 2Z3M_B 2Z3N_B 2DPS_B 2Z3K_B 2CXA_A.
Probab=31.82 E-value=1.4e+02 Score=19.01 Aligned_cols=75 Identities=12% Similarity=0.029 Sum_probs=44.0
Q ss_pred CceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHc
Q 031671 51 SGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKF 130 (155)
Q Consensus 51 ~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~ 130 (155)
...+=++.++++||-..-..-..-.... .++- +..+-++..+.++.+++++.|+.-+-+.+ .| ...+++
T Consensus 98 aHSvEvw~~~~LvGGlyGv~iG~~F~GE-SMFs----~~~~ASKval~~L~~~L~~~g~~liD~Q~--~~----~hl~sl 166 (173)
T PF03588_consen 98 AHSVEVWQGGELVGGLYGVAIGGVFFGE-SMFS----RVSNASKVALVALVEHLRQCGFQLIDCQM--PT----PHLASL 166 (173)
T ss_dssp EEEEEEEETTEEEEEEEEEEETTEEEEE-EEEE----SSTTHHHHHHHHHHHHHHHTT--EEEEES--------HHHHHT
T ss_pred eEEEeeecCCeeEEeeeCEEECCEEEec-cccc----cCCChHHHHHHHHHHHHHHCCCcEEEecc--CC----HHHHhc
Confidence 3445566789999766543222222222 2222 33578999999999999999987665543 33 455777
Q ss_pred CeEEEE
Q 031671 131 GFQVDT 136 (155)
Q Consensus 131 Gf~~~~ 136 (155)
|-+.+.
T Consensus 167 Ga~~i~ 172 (173)
T PF03588_consen 167 GAKEIP 172 (173)
T ss_dssp TEEEE-
T ss_pred CCEeCC
Confidence 876543
No 264
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=31.76 E-value=1.2e+02 Score=21.92 Aligned_cols=47 Identities=11% Similarity=0.209 Sum_probs=31.6
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeE
Q 031671 80 KLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQ 133 (155)
Q Consensus 80 ~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~ 133 (155)
.+++.++ +.+...+++.+.+.|++.+.++++..-.+-+.-=.++||.
T Consensus 138 QlY~~~d-------r~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~ 184 (367)
T TIGR02708 138 QFYMSKD-------DGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFV 184 (367)
T ss_pred EEeccCC-------HHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCC
Confidence 5666554 3466777888888899999999886544444444455553
No 265
>PRK10150 beta-D-glucuronidase; Provisional
Probab=31.51 E-value=2.5e+02 Score=21.81 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=48.4
Q ss_pred CCeEEEEEEEEccCC--CCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEe
Q 031671 73 SLSASITKLAVKENY--RGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 73 ~~~~~i~~~~v~~~~--r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 139 (155)
+....+.++..+++. +|.++-...+..-++.+++.|+..+.+.-.+..+....+.-++|+-+..+.+
T Consensus 289 G~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p 357 (604)
T PRK10150 289 GKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETP 357 (604)
T ss_pred CEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecc
Confidence 345666666666664 4555667777777889999999999886555555666777899998887664
No 266
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=31.50 E-value=70 Score=18.06 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=17.3
Q ss_pred EEEEEecCCchhHhHHHH----cCeEEEEEE
Q 031671 112 ITLHVDPLRTPAVNLYKK----FGFQVDTLI 138 (155)
Q Consensus 112 ~~~~~~~~n~~a~~~y~~----~Gf~~~~~~ 138 (155)
+.+.|. +-..+.+||++ +||+.....
T Consensus 4 v~l~v~-d~~~s~~FY~~~f~~lg~~~~~~~ 33 (123)
T cd07262 4 VTLGVN-DLERARAFYDAVLAPLGIKRVMED 33 (123)
T ss_pred EEEecC-cHHHHHHHHHHHHhhcCceEEeec
Confidence 444442 34568999988 599986543
No 267
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=31.48 E-value=1.3e+02 Score=21.71 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=22.4
Q ss_pred HHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEE
Q 031671 104 CRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 104 ~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~ 138 (155)
.+..|++++.+-+ |+.-+.-.+.+|.+++++.
T Consensus 331 L~~Lgv~~irLlT---np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 331 LRDLGVGKMRLLS---SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHcCCCeEEECC---CcHHHHhhhhCCcEEEEEe
Confidence 3455888888874 5556666778888888654
No 268
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=31.43 E-value=94 Score=21.02 Aligned_cols=41 Identities=22% Similarity=0.211 Sum_probs=32.3
Q ss_pred EEEEEEEEccCCCCCChHHHHHHHHHHHHHhC-CccEEEEEE
Q 031671 76 ASITKLAVKENYRGQGHGEALLEAAIKKCRTR-TVLCITLHV 116 (155)
Q Consensus 76 ~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~-g~~~~~~~~ 116 (155)
-+++...+-|.|=-.|++++.++....+.... |-+.+.+..
T Consensus 144 tYlgs~r~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNa 185 (259)
T COG0623 144 TYLGSERVVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNA 185 (259)
T ss_pred EeccceeecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEee
Confidence 35567789999999999999999999888654 666665553
No 269
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=31.39 E-value=1e+02 Score=17.28 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=14.5
Q ss_pred HHHHhccCCceEEEEE-CCeEEEEEEE
Q 031671 43 DEELKKKNSGLLYIQI-HGQVVGHVMY 68 (155)
Q Consensus 43 ~~~~~~~~~~~~~~~~-~~~~vG~~~~ 68 (155)
.+.+...+...+.+.+ +|+++|.+..
T Consensus 88 ~~~m~~~~~~~l~Vvd~~~~~~Givt~ 114 (120)
T cd04641 88 FDLIVKARVHRLVVVDENKRVEGIISL 114 (120)
T ss_pred HHHHHhcCccEEEEECCCCCEEEEEEH
Confidence 3334433444444443 5789998865
No 270
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=31.38 E-value=76 Score=20.44 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=13.3
Q ss_pred CceEEEEECCeEEEEEEEE
Q 031671 51 SGLLYIQIHGQVVGHVMYA 69 (155)
Q Consensus 51 ~~~~~~~~~~~~vG~~~~~ 69 (155)
..++++..+|+++|+....
T Consensus 163 d~viVv~~ng~~vGVg~a~ 181 (202)
T COG5270 163 DEVIVVSENGRVVGVGIAK 181 (202)
T ss_pred CeEEEEecCCEEEEEEEEe
Confidence 3455666688888888775
No 271
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=31.17 E-value=1.4e+02 Score=18.76 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=18.6
Q ss_pred EEEecCCchh-HhHHHHcCeEEEEEEe
Q 031671 114 LHVDPLRTPA-VNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 114 ~~~~~~n~~a-~~~y~~~Gf~~~~~~~ 139 (155)
..++.....+ .+++++-||+..+...
T Consensus 51 WvTn~~~~~~~~~l~~~WGf~~~~~~~ 77 (176)
T PF05063_consen 51 WVTNSQLPEAKLELFPAWGFEYVTEWV 77 (176)
T ss_pred EeccchhhHHHHHHHHhCCCEEEEEEE
Confidence 3344445567 8999999999887643
No 272
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=31.00 E-value=1e+02 Score=17.23 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=17.1
Q ss_pred HhhhHHHHHhccCCceEEEEECCeEEEEE
Q 031671 38 LARSFDEELKKKNSGLLYIQIHGQVVGHV 66 (155)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~vG~~ 66 (155)
....+.+.+.+.....=++..+|++||=.
T Consensus 53 ~~~~~a~~I~ede~fYPlV~i~~eiV~EG 81 (93)
T PF07315_consen 53 HDQQFAERILEDELFYPLVVINDEIVAEG 81 (93)
T ss_dssp HHHHHHHHHHTTSS-SSEEEETTEEEEES
T ss_pred HHHHHHHHHHhcccccceEEECCEEEecC
Confidence 34456666665555444555599999843
No 273
>PLN02535 glycolate oxidase
Probab=30.88 E-value=1.2e+02 Score=21.93 Aligned_cols=49 Identities=14% Similarity=0.084 Sum_probs=31.6
Q ss_pred EEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeE
Q 031671 78 ITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQ 133 (155)
Q Consensus 78 i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~ 133 (155)
...+++.++ +.+...+++.|.+.|++.+.++++..-.+-+.-=.++||.
T Consensus 127 wfQlY~~~d-------r~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~ 175 (364)
T PLN02535 127 FLQLYVYKR-------RDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMI 175 (364)
T ss_pred EEEEeccCC-------HHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCC
Confidence 336666554 4567777888888899999999886433333333445553
No 274
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=30.86 E-value=70 Score=15.54 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=18.0
Q ss_pred CCCCCChHHHHHHHHHHHHHhC
Q 031671 86 NYRGQGHGEALLEAAIKKCRTR 107 (155)
Q Consensus 86 ~~r~~Gig~~ll~~~~~~~~~~ 107 (155)
=||+--+|..|.+.+-+...+.
T Consensus 5 lYR~stlG~aL~dtLDeli~~~ 26 (49)
T PF02268_consen 5 LYRRSTLGIALTDTLDELIQEG 26 (49)
T ss_dssp GGGCSHHHHHHHHHHHHHHHTT
T ss_pred HHHcchHHHHHHHHHHHHHHcC
Confidence 3889999999998888777654
No 275
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=30.70 E-value=97 Score=16.82 Aligned_cols=36 Identities=11% Similarity=0.003 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHc
Q 031671 95 ALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKF 130 (155)
Q Consensus 95 ~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~ 130 (155)
.++...+.+....|+..+++..+....++..+.++.
T Consensus 5 ~~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~ 40 (97)
T PF13704_consen 5 DYLPEWLAHHLALGVDHIYIYDDGSTDGTREILRAL 40 (97)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhC
Confidence 345566666678899999888776666777777665
No 276
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=30.57 E-value=1e+02 Score=17.13 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=15.1
Q ss_pred CCchhHhHHH-HcCeEEEEEE
Q 031671 119 LRTPAVNLYK-KFGFQVDTLI 138 (155)
Q Consensus 119 ~n~~a~~~y~-~~Gf~~~~~~ 138 (155)
+=..+.+||. .+||+.....
T Consensus 11 d~~~a~~FY~~~lG~~~~~~~ 31 (122)
T cd07246 11 DAAAAIDFYKKAFGAEELERM 31 (122)
T ss_pred CHHHHHHHHHHhhCCEEEEEE
Confidence 4456899997 5899987654
No 277
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=30.37 E-value=75 Score=21.05 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=27.8
Q ss_pred cCCCCCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 85 ENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 85 ~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
|...|.--|..-+..+.++|.+.|++.+.+++..
T Consensus 21 ~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS 54 (221)
T cd00475 21 DRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFS 54 (221)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 4445666788999999999999999999888554
No 278
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=30.29 E-value=55 Score=18.83 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=17.4
Q ss_pred cEEEEEEecCCchhHhHHHH-cCeEEEEE
Q 031671 110 LCITLHVDPLRTPAVNLYKK-FGFQVDTL 137 (155)
Q Consensus 110 ~~~~~~~~~~n~~a~~~y~~-~Gf~~~~~ 137 (155)
..+.+.|. +=..+.+||.+ +||++...
T Consensus 8 ~~v~l~v~-d~~~s~~FY~~vLG~~~~~~ 35 (124)
T cd08361 8 AYVRLGTR-DLAGATRFATDILGLQVAER 35 (124)
T ss_pred eEEEEeeC-CHHHHHHHHHhccCceeccC
Confidence 34444444 33569999976 79997543
No 279
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=30.27 E-value=67 Score=16.70 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=15.2
Q ss_pred chhHhHHHHcCeEEEEEEe
Q 031671 121 TPAVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 121 ~~a~~~y~~~Gf~~~~~~~ 139 (155)
...++..++.||......-
T Consensus 10 ke~ik~Le~~Gf~~vrqkG 28 (66)
T COG1724 10 KEVIKALEKDGFQLVRQKG 28 (66)
T ss_pred HHHHHHHHhCCcEEEEeec
Confidence 3478999999999987653
No 280
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=29.89 E-value=1e+02 Score=16.84 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEE
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVD 135 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~ 135 (155)
|-.++..+...+.+.|..-... ..+....+.+.+.|+...
T Consensus 58 ~~~~L~~~~~~~~~~~~~~~l~---~~~~~~~~~l~~~g~~~~ 97 (107)
T cd07042 58 AAEALEELVKDLRKRGVELYLA---GLNPQVRELLERAGLLDE 97 (107)
T ss_pred HHHHHHHHHHHHHHCCCEEEEe---cCCHHHHHHHHHcCcHHH
Confidence 4455666666666777543333 355678999999998754
No 281
>PRK06724 hypothetical protein; Provisional
Probab=29.84 E-value=83 Score=18.46 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=20.6
Q ss_pred CccEEEEEEecCCchhHhHHHH----cCeEEEE
Q 031671 108 TVLCITLHVDPLRTPAVNLYKK----FGFQVDT 136 (155)
Q Consensus 108 g~~~~~~~~~~~n~~a~~~y~~----~Gf~~~~ 136 (155)
++..+.+.|. +=.+|.+||++ +||+...
T Consensus 7 ~i~Hv~l~V~-Dle~s~~FY~~vlg~lg~~~~~ 38 (128)
T PRK06724 7 GIHHIEFWVA-NLEESISFYDMLFSIIGWRKLN 38 (128)
T ss_pred ccCEEEEEeC-CHHHHHHHHHHHHhhCCcEEee
Confidence 5677777775 44678999987 6888753
No 282
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.79 E-value=76 Score=21.24 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=28.0
Q ss_pred cCCCCCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 85 ENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 85 ~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
|...|.--|..-+..+.++|.+.|++.+.+++..
T Consensus 24 ~~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS 57 (233)
T PRK14841 24 PRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFS 57 (233)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeee
Confidence 4445677788999999999999999999888654
No 283
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=29.75 E-value=1e+02 Score=16.84 Aligned_cols=18 Identities=22% Similarity=0.336 Sum_probs=11.8
Q ss_pred CceEEEEECCeEEEEEEE
Q 031671 51 SGLLYIQIHGQVVGHVMY 68 (155)
Q Consensus 51 ~~~~~~~~~~~~vG~~~~ 68 (155)
....++..+++++|.+..
T Consensus 91 ~~~~Vv~~~~~~iG~it~ 108 (114)
T cd04604 91 TALPVVDDNGRPVGVLHI 108 (114)
T ss_pred CEEEEECCCCCEEEEEEH
Confidence 344444447899998864
No 284
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=29.65 E-value=27 Score=18.86 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=18.6
Q ss_pred EEEEccCCCCCChHHHHHHHHHH
Q 031671 80 KLAVKENYRGQGHGEALLEAAIK 102 (155)
Q Consensus 80 ~~~v~~~~r~~Gig~~ll~~~~~ 102 (155)
-+.+||+..|+.+.+.+.+.+..
T Consensus 49 IiltD~D~aG~~i~~~~~~~l~~ 71 (81)
T cd01027 49 IILTDPDRKGEKIRKKLSEYLSG 71 (81)
T ss_pred EEEECCCHHHHHHHHHHHHHhcc
Confidence 57899999998888888877643
No 285
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=29.46 E-value=1.6e+02 Score=18.82 Aligned_cols=43 Identities=16% Similarity=0.071 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecCCch-h---HhHHHHcCeEEEE
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPLRTP-A---VNLYKKFGFQVDT 136 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~-a---~~~y~~~Gf~~~~ 136 (155)
+..+...+++.+.+.+..-+.=.+. .+.. . ++.+++.||+..-
T Consensus 78 a~~~~~~~~~~a~~~~~nii~E~tl-~~~~~~~~~~~~~k~~GY~v~l 124 (199)
T PF06414_consen 78 ASRLAEKLIEYAIENRYNIIFEGTL-SNPSKLRKLIREAKAAGYKVEL 124 (199)
T ss_dssp HHHHHHHHHHHHHHCT--EEEE--T-TSSHHHHHHHHHHHCTT-EEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEecCC-CChhHHHHHHHHHHcCCceEEE
Confidence 4557777888888887764443333 3432 2 3567788998653
No 286
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=29.45 E-value=70 Score=18.06 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=15.7
Q ss_pred CCchhHhHHH-HcCeEEEEEE
Q 031671 119 LRTPAVNLYK-KFGFQVDTLI 138 (155)
Q Consensus 119 ~n~~a~~~y~-~~Gf~~~~~~ 138 (155)
+=..|..||+ .+||+.....
T Consensus 9 d~~~a~~FY~~~lG~~~~~~~ 29 (122)
T cd08355 9 DAAAAIDWLTDAFGFEERLVV 29 (122)
T ss_pred CHHHHHHHHHHhcCCEEEEEE
Confidence 4457999997 8999987654
No 287
>PF13289 SIR2_2: SIR2-like domain
Probab=29.43 E-value=1.2e+02 Score=17.69 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=13.0
Q ss_pred EEEEEecCC-chhHhHHHHcCeEE
Q 031671 112 ITLHVDPLR-TPAVNLYKKFGFQV 134 (155)
Q Consensus 112 ~~~~~~~~n-~~a~~~y~~~Gf~~ 134 (155)
.++.+...+ .....++++.|.++
T Consensus 119 ~~~v~~~~~~~~~~~~~~~~~i~~ 142 (143)
T PF13289_consen 119 HYIVIPDPDDENEREFLEKYGIEV 142 (143)
T ss_pred EEEEEcCCchHHHHHHHHHcCCEE
Confidence 333333333 55677777777664
No 288
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=29.38 E-value=1e+02 Score=16.77 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=11.4
Q ss_pred CceEEEEECCeEEEEEEE
Q 031671 51 SGLLYIQIHGQVVGHVMY 68 (155)
Q Consensus 51 ~~~~~~~~~~~~vG~~~~ 68 (155)
....++..+|+++|.+..
T Consensus 85 ~~~~Vv~~~~~~~G~it~ 102 (108)
T cd04596 85 EMLPVVDDNKKLLGIISR 102 (108)
T ss_pred CeeeEEcCCCCEEEEEEH
Confidence 333344447889998864
No 289
>PHA02126 hypothetical protein
Probab=29.34 E-value=24 Score=20.61 Aligned_cols=57 Identities=19% Similarity=0.305 Sum_probs=32.1
Q ss_pred CCCCChHHHHHHHHHHHHHh-----C-CccEEEEEEecCC--chhHhHHHHcCeEEEEEEecccc
Q 031671 87 YRGQGHGEALLEAAIKKCRT-----R-TVLCITLHVDPLR--TPAVNLYKKFGFQVDTLIQGFYS 143 (155)
Q Consensus 87 ~r~~Gig~~ll~~~~~~~~~-----~-g~~~~~~~~~~~n--~~a~~~y~~~Gf~~~~~~~~~~~ 143 (155)
-||.|=-+.=|-..+..|+. . |-..+.+.+.+.. .--.++|.|-||..-.+...||.
T Consensus 67 ~r~~~~nk~rmldtlsfcrdkmhfell~rppviif~t~~~~~~ir~alysktgfsk~~eftayyi 131 (153)
T PHA02126 67 IRRAGGNKPRMLDTLSFCRDKMHFELLGRPPVIIFNTQTPLTDIRIALYSKTGFSKSTEFTAYYV 131 (153)
T ss_pred HHhccCCCchhHHHHHHHhhhHHHHHhCCCCEEEEeccCchHHHHHHHHhccCCCCCceeeeeee
Confidence 35555444333334444432 2 4334444433222 23468999999999888888775
No 290
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=29.31 E-value=88 Score=20.15 Aligned_cols=26 Identities=15% Similarity=0.348 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
|+.|+.++++.+.+.|++.+.+.+..
T Consensus 29 g~~li~~~l~~l~~~gi~~i~iv~~~ 54 (221)
T cd06422 29 GKPLIDHALDRLAAAGIRRIVVNTHH 54 (221)
T ss_pred CEEHHHHHHHHHHHCCCCEEEEEccC
Confidence 56899999999999999988887654
No 291
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=29.26 E-value=1e+02 Score=19.97 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecC
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPL 119 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~ 119 (155)
|+.|+.++++.+.+.|++.+.+.+...
T Consensus 28 g~~li~~~l~~l~~~gi~~i~vv~~~~ 54 (229)
T cd02523 28 GKPLLERQIETLKEAGIDDIVIVTGYK 54 (229)
T ss_pred CEEHHHHHHHHHHHCCCceEEEEeccC
Confidence 357889999998888998888877653
No 292
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=29.15 E-value=73 Score=17.98 Aligned_cols=24 Identities=21% Similarity=0.229 Sum_probs=16.0
Q ss_pred EEEEEecCCchhHhHHH-HcCeEEEE
Q 031671 112 ITLHVDPLRTPAVNLYK-KFGFQVDT 136 (155)
Q Consensus 112 ~~~~~~~~n~~a~~~y~-~~Gf~~~~ 136 (155)
+.+.|. +=.+|.+||+ .+||+...
T Consensus 6 ~~l~v~-D~~~a~~FY~~~lG~~~~~ 30 (120)
T cd09011 6 PLLVVK-DIEKSKKFYEKVLGLKVVM 30 (120)
T ss_pred EEEEEC-CHHHHHHHHHHhcCCEEee
Confidence 344443 4467999997 49998753
No 293
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.04 E-value=82 Score=21.23 Aligned_cols=34 Identities=12% Similarity=0.146 Sum_probs=28.0
Q ss_pred cCCCCCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 85 ENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 85 ~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
|...|.--|..-+..++++|.+.|++.+.+++..
T Consensus 29 ~~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS 62 (241)
T PRK14842 29 KRSEGHREGANAIDRLMDASLEYGLKNISLYAFS 62 (241)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 3445677788999999999999999999888654
No 294
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=28.98 E-value=75 Score=21.45 Aligned_cols=44 Identities=14% Similarity=0.235 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCccEEEEEEecCC------chhHhHHHHcCeEEEEEEe
Q 031671 96 LLEAAIKKCRTRTVLCITLHVDPLR------TPAVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 96 ll~~~~~~~~~~g~~~~~~~~~~~n------~~a~~~y~~~Gf~~~~~~~ 139 (155)
-+...+++|++.|+..+.+....-. ...++..++.||++..+..
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES
T ss_pred hHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeeccc
Confidence 4577788899999999988733222 2456778889999887664
No 295
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=28.97 E-value=1.4e+02 Score=22.35 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=22.6
Q ss_pred HhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEe
Q 031671 105 RTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 105 ~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 139 (155)
+..|++++.+-+ +|+.-+.-.+.+|.++++..+
T Consensus 377 ~dLGI~~irLLT--NNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 377 RDLGVRTMRLMT--NNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHcCCCEEEECC--CCHHHHHHHhhCCCEEEEEec
Confidence 344777777653 355566677899999887664
No 296
>COG4866 Uncharacterized conserved protein [Function unknown]
Probab=28.82 E-value=2e+02 Score=19.79 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=33.2
Q ss_pred CCceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccCCCCCChHHHHHHHH
Q 031671 50 NSGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKENYRGQGHGEALLEAA 100 (155)
Q Consensus 50 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~ll~~~ 100 (155)
.....+...+++++|+.......+..+.|.-=-.+++++| .-+++....
T Consensus 202 ~lkgllirv~neI~aftL~e~ln~~~alIhiEk~l~d~~G--~Yqain~q~ 250 (294)
T COG4866 202 DLKGLLIRVNNEIVAFTLGEVLNEESALIHIEKALTDIAG--AYQAINQQL 250 (294)
T ss_pred CccceEEEEccEEEEEEEEEeeCCceeeeehhhcchHHHH--HHHHHHHHH
Confidence 3445666679999999988777677777765566777764 444444433
No 297
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=28.74 E-value=1.1e+02 Score=16.94 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEE
Q 031671 96 LLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 96 ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~ 136 (155)
++..+.+.+++.|.+-.... .+....+.+++.|+...-
T Consensus 59 ~L~~~~~~~~~~g~~l~l~~---~~~~v~~~l~~~gl~~~~ 96 (106)
T TIGR02886 59 VILGRYKKIKNEGGEVIVCN---VSPAVKRLFELSGLFKII 96 (106)
T ss_pred HHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHhCCceEE
Confidence 44556667777776544333 567789999999997543
No 298
>PF04796 RepA_C: Plasmid encoded RepA protein; InterPro: IPR006881 This is a family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood [].
Probab=28.48 E-value=1.1e+02 Score=19.16 Aligned_cols=40 Identities=10% Similarity=0.088 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEE
Q 031671 92 HGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 92 ig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~ 136 (155)
+++.++.++..+|...+-..|.+. ..+..|.+++|+...|
T Consensus 6 ~pRLiL~~l~TeAvrt~sr~I~lG-----~S~~~flr~lG~~~tG 45 (161)
T PF04796_consen 6 YPRLILAWLCTEAVRTKSREIELG-----RSLSEFLRRLGLSPTG 45 (161)
T ss_pred hhHHHHHHHHHHHhccCCceEeec-----cCHHHHHHHhCCCCCC
Confidence 568899999999998887777663 2467899999998855
No 299
>PRK07758 hypothetical protein; Provisional
Probab=28.45 E-value=78 Score=17.87 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=17.2
Q ss_pred CCChHHHHHHHHHHHHHhCCc
Q 031671 89 GQGHGEALLEAAIKKCRTRTV 109 (155)
Q Consensus 89 ~~Gig~~ll~~~~~~~~~~g~ 109 (155)
=+|+|..-++.+.+...+.|.
T Consensus 72 iknlGkKSL~EIkekL~E~GL 92 (95)
T PRK07758 72 LHGMGPASLPKLRKALEESGL 92 (95)
T ss_pred ccCCCHHHHHHHHHHHHHcCC
Confidence 368899999999888888764
No 300
>PF04555 XhoI: Restriction endonuclease XhoI; InterPro: IPR007636 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction enzymes such as XhoI (3.1.21.4 from EC), which recognises the double-stranded sequence CTCGAG and cleave after C-1 [].; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=28.37 E-value=1.2e+02 Score=19.63 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=29.9
Q ss_pred EEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 81 LAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 81 ~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
+-|+|+|+|..+.++---.+.....+.-+....+.+..
T Consensus 145 Fpv~p~F~g~SY~~Ry~ilc~rLv~e~lY~aa~l~~s~ 182 (196)
T PF04555_consen 145 FPVDPEFKGASYLKRYEILCERLVQERLYTAACLITSP 182 (196)
T ss_pred CCccHHhcCCcHHHHHHHHHHHHHHhcccceeEEEEec
Confidence 56899999999999988888888888766655555443
No 301
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.17 E-value=98 Score=20.99 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=27.2
Q ss_pred CCCCChHHHHHHHHHHHHHhCCccEEEEEEecC
Q 031671 87 YRGQGHGEALLEAAIKKCRTRTVLCITLHVDPL 119 (155)
Q Consensus 87 ~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~ 119 (155)
..|.--|..-+..++++|.+.|++.+.+++...
T Consensus 37 ~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~ 69 (249)
T PRK14834 37 AAGHRAGVEALRRVVRAAGELGIGYLTLFAFSS 69 (249)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEec
Confidence 346667889999999999999999998887543
No 302
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.00 E-value=91 Score=15.67 Aligned_cols=25 Identities=16% Similarity=0.462 Sum_probs=15.0
Q ss_pred EEEEEEecCCc-hhHhHHHHcCeEEE
Q 031671 111 CITLHVDPLRT-PAVNLYKKFGFQVD 135 (155)
Q Consensus 111 ~~~~~~~~~n~-~a~~~y~~~Gf~~~ 135 (155)
.+.+.+...+. .+.+..++.||+..
T Consensus 44 ~v~i~v~~~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 44 ILVFRVQTMNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred EEEEEEecCCHHHHHHHHHHCCCeee
Confidence 34455543444 56777778888754
No 303
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.80 E-value=66 Score=21.83 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=27.7
Q ss_pred cCCCCCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 85 ENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 85 ~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
|...|.--|..-+..+.++|.+.|++.+.+++..
T Consensus 39 ~~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS 72 (253)
T PRK14832 39 PRIAGHRQGARTLKELLRCCKDWGIKALTAYAFS 72 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 3445666788999999999999999998888654
No 304
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=27.71 E-value=1.7e+02 Score=18.60 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHHHHhCCccEEEEEEecCCchh---HhHHHHcCeEEEEEEec
Q 031671 90 QGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPA---VNLYKKFGFQVDTLIQG 140 (155)
Q Consensus 90 ~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a---~~~y~~~Gf~~~~~~~~ 140 (155)
.-+|..+++.+.+...+.|+.-..=.|..-|-+. ....++.||+++...+.
T Consensus 42 ~eva~ai~~~l~~~~~~~gi~LA~QcCEHlNRALvvEr~~a~~~~le~V~VvP~ 95 (172)
T PF04260_consen 42 LEVAEAIFEALLEVLKERGIYLAFQCCEHLNRALVVEREVAEKYGLEEVTVVPV 95 (172)
T ss_dssp HHHHHHHHHHHHHHHHTTT-EEEEE--GGGTT-EEEEHHHHHHHT--EEE-B-B
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEchhhhhHHHHhhHHHHhHcCCceEEEEcc
Confidence 3578999999999999999875555566556442 57788999999987764
No 305
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=27.61 E-value=1.1e+02 Score=16.65 Aligned_cols=17 Identities=35% Similarity=0.382 Sum_probs=11.0
Q ss_pred ceEEEEECCeEEEEEEE
Q 031671 52 GLLYIQIHGQVVGHVMY 68 (155)
Q Consensus 52 ~~~~~~~~~~~vG~~~~ 68 (155)
...++..+++++|.+..
T Consensus 91 ~l~Vv~~~~~~~Gvvs~ 107 (113)
T cd04587 91 HLPVVDKSGQVVGLLDV 107 (113)
T ss_pred cccEECCCCCEEEEEEH
Confidence 33444446889998865
No 306
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=27.53 E-value=74 Score=22.48 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=28.3
Q ss_pred cCCCCCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 85 ENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 85 ~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
|...|.-.|...+..++++|.+.|++.+.++...
T Consensus 40 ~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFS 73 (322)
T PTZ00349 40 HSAIGHFMGSKALIQIIEICIKLKIKILSVFSFS 73 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 4445777899999999999999999999888554
No 307
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=27.44 E-value=1.3e+02 Score=21.44 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEE
Q 031671 94 EALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQV 134 (155)
Q Consensus 94 ~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~ 134 (155)
+..+..+++.+...|++.+.++++....+-+.-=.++||+.
T Consensus 130 ~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~ 170 (344)
T cd02922 130 RTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEE 170 (344)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCc
Confidence 34777888888889999999998876443333334556643
No 308
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=27.41 E-value=48 Score=18.75 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=18.3
Q ss_pred EEEEEEecCCchhHhHHHH-cCeEEEEEE
Q 031671 111 CITLHVDPLRTPAVNLYKK-FGFQVDTLI 138 (155)
Q Consensus 111 ~~~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 138 (155)
.+.+.|. +=..+.+||.+ +||+.....
T Consensus 3 hv~l~v~-d~~~~~~fy~~~lG~~~~~~~ 30 (128)
T cd07249 3 HIGIAVP-DLEAAIKFYRDVLGVGPWEEE 30 (128)
T ss_pred EEEEEeC-CHHHHHHHHHHhhCCCCcccc
Confidence 4555553 34568999987 899986543
No 309
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=27.35 E-value=1.2e+02 Score=16.86 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=16.8
Q ss_pred EEEEEecCCchhHhHHHH-cCeEEEEE
Q 031671 112 ITLHVDPLRTPAVNLYKK-FGFQVDTL 137 (155)
Q Consensus 112 ~~~~~~~~n~~a~~~y~~-~Gf~~~~~ 137 (155)
+.+.+. +=..+.+||.+ +||+....
T Consensus 4 v~i~v~-d~~~a~~fY~~~lG~~~~~~ 29 (121)
T cd07233 4 TMLRVK-DLEKSLDFYTDVLGMKLLRR 29 (121)
T ss_pred EEEEec-CcHHHHHHHHhccCCeEEEE
Confidence 444443 44578999975 59998764
No 310
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.17 E-value=88 Score=20.95 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.2
Q ss_pred CCCCCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 86 NYRGQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 86 ~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
...|.--|..-+..++++|.+.|++.+.+++..
T Consensus 26 ~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS 58 (233)
T PRK14833 26 RAAGHKKGVKTLREITIWCANHKLECLTLYAFS 58 (233)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecc
Confidence 344666788999999999999999999888654
No 311
>COG2360 Aat Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]
Probab=27.13 E-value=1.9e+02 Score=19.14 Aligned_cols=81 Identities=11% Similarity=0.105 Sum_probs=47.3
Q ss_pred HHHHHhccCCceEEEEECCeEEEEEEEEecCCCeEEEEEEEEccC--CCCCChHHHHHHHHHHHHHhCCccEEEEEEecC
Q 031671 42 FDEELKKKNSGLLYIQIHGQVVGHVMYAWPTSLSASITKLAVKEN--YRGQGHGEALLEAAIKKCRTRTVLCITLHVDPL 119 (155)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~i~~~~v~~~--~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~ 119 (155)
+.+.......+.+=++.++++||-+.-. .++.++.-++ +|..+-.+..+-++.++....|..-+-. .-.
T Consensus 112 Y~~Lh~~G~AHSvE~W~gdeLvGGlYGv-------alG~~F~GESMFsr~~nASKialv~lv~~L~~~g~~LiD~--Q~~ 182 (221)
T COG2360 112 YHKLHEMGHAHSVEVWQGDELVGGLYGV-------ALGRAFFGESMFSRATNASKIALVHLVEHLRRHGFVLIDC--QVL 182 (221)
T ss_pred HHHHHHhccceeEEEeeCCeeehhhhhh-------hhcceeechhhhhcCCCchHHHHHHHHHHHHhcCceEEee--ecC
Confidence 3333333445566677799999865432 1222222222 4566777888889999999998865544 444
Q ss_pred CchhHhHHHHcCeEEE
Q 031671 120 RTPAVNLYKKFGFQVD 135 (155)
Q Consensus 120 n~~a~~~y~~~Gf~~~ 135 (155)
| .-.+++|-..+
T Consensus 183 n----~HL~~~GA~~i 194 (221)
T COG2360 183 N----EHLASLGAYEI 194 (221)
T ss_pred C----HHHHhcCCeec
Confidence 4 23344554443
No 312
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=26.98 E-value=32 Score=19.17 Aligned_cols=33 Identities=12% Similarity=0.020 Sum_probs=17.7
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhCCccEEE
Q 031671 80 KLAVKENYRGQGHGEALLEAAIKKCRTRTVLCIT 113 (155)
Q Consensus 80 ~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~ 113 (155)
-+++||+--|.-++..+++.+....... +++++
T Consensus 64 iiatD~D~EGe~Ia~~i~~~~~~~~~~~-~~R~~ 96 (100)
T PF01751_consen 64 IIATDPDREGELIAWEIIELLGKNNPKL-IKRVW 96 (100)
T ss_dssp EEEC-SSHHHHHHHHHHHHHHHHHSHHH-TTEEE
T ss_pred eecCCCChHHHHHHHHHHHHHhHhCCCc-CCEEE
Confidence 4566666666666666665555554433 34444
No 313
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=26.97 E-value=1.3e+02 Score=19.22 Aligned_cols=27 Identities=7% Similarity=0.252 Sum_probs=18.3
Q ss_pred EEEEEEecCCchhHhHHH-HcCeEEEEEE
Q 031671 111 CITLHVDPLRTPAVNLYK-KFGFQVDTLI 138 (155)
Q Consensus 111 ~~~~~~~~~n~~a~~~y~-~~Gf~~~~~~ 138 (155)
...+.|. +=..|+.||+ .+||+...+.
T Consensus 30 Ht~i~V~-Dle~Si~FY~~vLG~~~~~r~ 57 (185)
T PLN03042 30 QTMFRIK-DPKASLDFYSRVLGMSLLKRL 57 (185)
T ss_pred EEEEeeC-CHHHHHHHHHhhcCCEEEEEE
Confidence 3344444 3457999996 6899987664
No 314
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=26.92 E-value=1.1e+02 Score=17.79 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=18.6
Q ss_pred cEEEEEEecCCchhHhHHHH-cCeEEEEEE
Q 031671 110 LCITLHVDPLRTPAVNLYKK-FGFQVDTLI 138 (155)
Q Consensus 110 ~~~~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 138 (155)
..+.+.|. +=..+++||++ +||+.....
T Consensus 5 ~hi~l~v~-dl~~s~~FY~~vlGl~~~~~~ 33 (134)
T cd08360 5 GHVVLFVP-DVEAAEAFYRDRLGFRVSDRF 33 (134)
T ss_pred eEEEEEcC-CHHHHHHHHHHhcCCEEEEEe
Confidence 44555554 34579999965 799886543
No 315
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=26.92 E-value=1.5e+02 Score=21.83 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=21.6
Q ss_pred hCCccEEEEEEecCCchhHhHHHHcCeEEEEEEe
Q 031671 106 TRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 106 ~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 139 (155)
..|++++.+-+ +|..-+.-.+.+|.++++..+
T Consensus 344 ~LGv~~irLLT--nnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 344 DLGVRSMRLLT--NNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HcCCCEEEECC--CCHHHHHHHhhCCCEEEEEec
Confidence 34777776654 355556667899999887664
No 316
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=26.78 E-value=2.1e+02 Score=19.37 Aligned_cols=47 Identities=6% Similarity=0.061 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEecc
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGF 141 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~ 141 (155)
|+-|+.++.+.+.+.|..++.+-+ +++.-...-++.|++.+-+..++
T Consensus 27 GkpmI~rV~e~a~~s~~~rvvVAT--Dde~I~~av~~~G~~avmT~~~h 73 (247)
T COG1212 27 GKPMIVRVAERALKSGADRVVVAT--DDERIAEAVQAFGGEAVMTSKDH 73 (247)
T ss_pred CchHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHhCCEEEecCCCC
Confidence 567899999999988888776554 45566677788888877655443
No 317
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=26.61 E-value=1.1e+02 Score=17.23 Aligned_cols=29 Identities=7% Similarity=0.134 Sum_probs=19.2
Q ss_pred ccEEEEEEecCCchhHhHHHH-cCeEEEEEE
Q 031671 109 VLCITLHVDPLRTPAVNLYKK-FGFQVDTLI 138 (155)
Q Consensus 109 ~~~~~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 138 (155)
+..+.+.|. +=..+.+||.+ +||++....
T Consensus 7 i~hv~l~v~-dl~~a~~FY~~~lG~~~~~~~ 36 (121)
T cd09013 7 LAHVELLTP-KPEESLWFFTDVLGLEETGRE 36 (121)
T ss_pred eeEEEEEeC-CHHHHHHHHHhCcCCEEEeec
Confidence 345555554 33579999976 599987653
No 318
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=26.46 E-value=73 Score=16.96 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=16.4
Q ss_pred CCchhHhHHHH-cCeEEEEEEe
Q 031671 119 LRTPAVNLYKK-FGFQVDTLIQ 139 (155)
Q Consensus 119 ~n~~a~~~y~~-~Gf~~~~~~~ 139 (155)
+-..+.+||.+ +||+......
T Consensus 8 d~~~~~~fy~~~lg~~~~~~~~ 29 (112)
T cd06587 8 DLEAAVAFYEEVLGFEVLFRNG 29 (112)
T ss_pred CHHHHHHHHHhccCCEEEEeec
Confidence 45679999997 9999877653
No 319
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.30 E-value=77 Score=21.35 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=27.7
Q ss_pred cCCCCCChHHHHHHHHHHHHHhCCccEEEEEEe
Q 031671 85 ENYRGQGHGEALLEAAIKKCRTRTVLCITLHVD 117 (155)
Q Consensus 85 ~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~ 117 (155)
|...|.--|..-+..+.++|.+.|++.+.+++.
T Consensus 35 ~~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaF 67 (243)
T PRK14829 35 KRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTF 67 (243)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHcCCCEEEEeee
Confidence 334566778899999999999999999988866
No 320
>PF13222 DUF4030: Protein of unknown function (DUF4030)
Probab=26.16 E-value=1.6e+02 Score=17.88 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecCCchh---------------HhHHHHcCeEEEEEEeccccCCCceeEe
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPLRTPA---------------VNLYKKFGFQVDTLIQGFYSADRPAYER 151 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a---------------~~~y~~~Gf~~~~~~~~~~~~~~~~~~m 151 (155)
-+.+-..+-..++.+|++...+.+...|..- -.+|.|.||+..+..+..+..+.+.++-
T Consensus 17 sseIk~~In~~lk~q~i~~y~Ini~qrnm~iv~~e~RW~~V~~~I~d~lf~Kn~Y~~~gI~~~n~k~~qp~~v~ 90 (142)
T PF13222_consen 17 SSEIKKEINKQLKNQGIKPYTINISQRNMEIVKQENRWNYVFSSIFDELFGKNGYKGFGIQQINVKSSQPVTVT 90 (142)
T ss_pred HHHHHHHHHHHHHHcCCceEEEeeeeeeHHHHHHhhhHHHHHHHHHHHHhhccCccccceeEeeecCCCcEEEE
Confidence 5677888888889999988888777666432 2589999999988876666666654443
No 321
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.10 E-value=73 Score=21.24 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=26.3
Q ss_pred CCCCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 87 YRGQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 87 ~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
..|.--|..-+..++++|.+.|++.+.+++..
T Consensus 16 ~~GH~~G~~~l~~i~~~c~~~GI~~lT~yaFS 47 (229)
T PRK10240 16 AFGHKAGAKSVRRAVSFAANNGIEALTLYAFS 47 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeee
Confidence 34555788899999999999999999888654
No 322
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=25.95 E-value=60 Score=19.54 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=14.5
Q ss_pred ChHHHHHHHHHHHHHhCCccEE
Q 031671 91 GHGEALLEAAIKKCRTRTVLCI 112 (155)
Q Consensus 91 Gig~~ll~~~~~~~~~~g~~~~ 112 (155)
+|+..+++.+.+.|++.|.+++
T Consensus 5 si~~~i~~~v~~~A~~~g~~~V 26 (135)
T PRK03824 5 ALAEAIVRTVIDYAQKEGASKV 26 (135)
T ss_pred HHHHHHHHHHHHHHHHcCCchh
Confidence 4667777777777777655433
No 323
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=25.93 E-value=1.1e+02 Score=19.99 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecCCchhHhH
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNL 126 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~ 126 (155)
|+.|+.++++.+.+.|++.+.+.+..........
T Consensus 30 g~~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~ 63 (236)
T cd04189 30 GKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEA 63 (236)
T ss_pred CcchHHHHHHHHHHCCCCEEEEEcCCCHHHHHHH
Confidence 5789999999998889988888776533333333
No 324
>PRK05309 30S ribosomal protein S11; Validated
Probab=25.78 E-value=1.6e+02 Score=17.66 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=37.0
Q ss_pred ccCCCCCChHH-HHHHHHHHHHHhCCccEEEEEEecC---CchhHhHHHHcCeEEEEEE
Q 031671 84 KENYRGQGHGE-ALLEAAIKKCRTRTVLCITLHVDPL---RTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 84 ~~~~r~~Gig~-~ll~~~~~~~~~~g~~~~~~~~~~~---n~~a~~~y~~~Gf~~~~~~ 138 (155)
.-..++.-++. .+.+.+.+.+.+.|++.+.+.+... .+.+++.+.+.|.......
T Consensus 52 Kg~rK~T~~Aa~~aa~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~~I~ 110 (128)
T PRK05309 52 KGSRKSTPYAAQVAAEDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVTSIK 110 (128)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEE
Confidence 33334444444 4556667778888999998887544 4567788888899876543
No 325
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.41 E-value=85 Score=21.29 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=27.7
Q ss_pred cCCCCCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 85 ENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 85 ~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
|...|.--|..-+..++++|.+.|++.+.+++..
T Consensus 43 ~~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS 76 (250)
T PRK14840 43 RAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFS 76 (250)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 3445666788999999999999999999888654
No 326
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=25.40 E-value=1.3e+02 Score=17.42 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=14.1
Q ss_pred CCchhHhHHHH-cCeEEEEE
Q 031671 119 LRTPAVNLYKK-FGFQVDTL 137 (155)
Q Consensus 119 ~n~~a~~~y~~-~Gf~~~~~ 137 (155)
+=..+++||++ +||+....
T Consensus 9 dl~~a~~Fy~~~lG~~~~~~ 28 (131)
T cd08343 9 DVAATAAFYTEVLGFRVSDR 28 (131)
T ss_pred CHHHHHHHHHhcCCCEEEEE
Confidence 34568999976 89997654
No 327
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=25.16 E-value=98 Score=19.67 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecC
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPL 119 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~ 119 (155)
|+.|+.++++.+.+.|++.+.+.+...
T Consensus 28 g~pli~~~l~~l~~~g~~~i~vv~~~~ 54 (217)
T cd04181 28 GKPILEYIIERLARAGIDEIILVVGYL 54 (217)
T ss_pred CeeHHHHHHHHHHHCCCCEEEEEeccC
Confidence 468999999999998999888887754
No 328
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=25.06 E-value=73 Score=13.60 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=10.4
Q ss_pred ceEEEEECCeEEEEEEE
Q 031671 52 GLLYIQIHGQVVGHVMY 68 (155)
Q Consensus 52 ~~~~~~~~~~~vG~~~~ 68 (155)
.++++..+++++|.+..
T Consensus 25 ~~~v~~~~~~~~g~i~~ 41 (49)
T smart00116 25 RLPVVDEEGRLVGIVTR 41 (49)
T ss_pred cccEECCCCeEEEEEEH
Confidence 33444445788888764
No 329
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=25.06 E-value=1.1e+02 Score=19.48 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecC
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPL 119 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~ 119 (155)
|+.|+.++++.+.+.|++.+.+.+...
T Consensus 28 g~pli~~~l~~l~~~g~~~v~vv~~~~ 54 (223)
T cd06915 28 GRPFLEYLLEYLARQGISRIVLSVGYL 54 (223)
T ss_pred CcchHHHHHHHHHHCCCCEEEEEcccC
Confidence 468999999999988988888876543
No 330
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=25.04 E-value=1.1e+02 Score=17.06 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=14.3
Q ss_pred CCchhHhHHH-HcCeEEEEE
Q 031671 119 LRTPAVNLYK-KFGFQVDTL 137 (155)
Q Consensus 119 ~n~~a~~~y~-~~Gf~~~~~ 137 (155)
+-..++.||+ .+||++...
T Consensus 10 d~~~s~~Fy~~~lG~~~~~~ 29 (122)
T cd08354 10 DLEAAEAFYEDVLGLELMLK 29 (122)
T ss_pred CHHHHHHHHHhccCCEEeec
Confidence 3457999997 579998763
No 331
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=24.99 E-value=1.3e+02 Score=16.41 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=16.2
Q ss_pred HHHHHhccCCceEEEEECCeEEEEEEE
Q 031671 42 FDEELKKKNSGLLYIQIHGQVVGHVMY 68 (155)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~vG~~~~ 68 (155)
..+.+...+...+.+.++++++|.+..
T Consensus 79 ~~~~~~~~~~~~~~Vv~~~~~~G~it~ 105 (111)
T cd04589 79 ALLLMTRHRIHRVVVREGGEVVGVLEQ 105 (111)
T ss_pred HHHHHHHhCccEEEEeeCCEEEEEEEh
Confidence 334444444444555557899998865
No 332
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=24.93 E-value=1.8e+02 Score=22.43 Aligned_cols=44 Identities=11% Similarity=0.091 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEE
Q 031671 95 ALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 95 ~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~ 138 (155)
.+++.+.+.+++.|...-.+.....+.....++..+||......
T Consensus 482 ~~i~~vi~~a~~~g~~v~vCGe~a~~p~~~~~l~~~G~~~lsv~ 525 (565)
T TIGR01417 482 RLIKLVIDAAKAEGIWVGMCGEMAGDERAIPLLLGLGLRELSMS 525 (565)
T ss_pred HHHHHHHHHHHHcCCeEEEeCCcCCCHHHHHHHHHCCCCEEEEC
Confidence 58888888888887653332334578889999999999987643
No 333
>PF02334 RTP: Replication terminator protein; InterPro: IPR003432 The bacterial replication terminator protein (RTP) plays a role in the termination of DNA replication by impeding replication fork movement. Two RTP dimers bind to the two inverted repeat regions at the termination site.; GO: 0003677 DNA binding, 0006274 DNA replication termination; PDB: 2DPU_A 2DPD_A 1F4K_A 1J0R_B 2EFW_F 2DQR_B 1BM9_B.
Probab=24.91 E-value=27 Score=20.25 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=18.1
Q ss_pred CCCCChHHHHHHHHHHHHHhCCcc
Q 031671 87 YRGQGHGEALLEAAIKKCRTRTVL 110 (155)
Q Consensus 87 ~r~~Gig~~ll~~~~~~~~~~g~~ 110 (155)
.|++|+|..+++.+.+..+..|+.
T Consensus 28 e~~r~Yg~q~Ld~lr~EFk~~Gy~ 51 (122)
T PF02334_consen 28 EQERGYGLQLLDELRSEFKPLGYR 51 (122)
T ss_dssp HTT-EBCTCHHHHHHHHHTTTT--
T ss_pred hcccchHHHHHHHHHHHhhhcCCC
Confidence 368899999999999988887743
No 334
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=24.78 E-value=1.2e+02 Score=18.60 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=18.9
Q ss_pred ccEEEEEEecCCchhHhHHH-HcCeEEEEE
Q 031671 109 VLCITLHVDPLRTPAVNLYK-KFGFQVDTL 137 (155)
Q Consensus 109 ~~~~~~~~~~~n~~a~~~y~-~~Gf~~~~~ 137 (155)
+..+.+.|. +=..++.||. .+||+....
T Consensus 7 i~Hi~l~V~-Dle~a~~FY~~vLG~~~~~~ 35 (166)
T cd09014 7 LDHVNLLAS-DVDANRDFMEEVLGFRLREQ 35 (166)
T ss_pred eeeEEEEcC-CHHHHHHHHHHccCCEEEEE
Confidence 445555554 3467999996 699987654
No 335
>PRK12303 tumor necrosis factor alpha-inducing protein; Reviewed
Probab=24.65 E-value=1.3e+02 Score=17.93 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=25.1
Q ss_pred CccEEEEEEecCCchhHhHHHHcCeEEEE
Q 031671 108 TVLCITLHVDPLRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 108 g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~ 136 (155)
+++++.+.+.++|+....+-+..||....
T Consensus 123 nvdrlgiyinpnneevfalvrargfdkda 151 (192)
T PRK12303 123 NVDRLGIYINPNNEEVFALVRARGFDKDA 151 (192)
T ss_pred cchheeeeeCCCcHHHHHHHHHhcCCHHH
Confidence 67788999999999999999999997654
No 336
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=24.62 E-value=1.4e+02 Score=20.76 Aligned_cols=47 Identities=11% Similarity=0.037 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEec
Q 031671 94 EALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQG 140 (155)
Q Consensus 94 ~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~ 140 (155)
-.+++++.+.+.+.|...-.+.-...|+.+..++..+|.......+.
T Consensus 234 l~li~~vi~~a~~~g~~vsvCGe~a~~p~~~~~Ll~lGi~~lSv~p~ 280 (293)
T PF02896_consen 234 LRLIKQVIDAAHKAGKPVSVCGEMASDPEAIPLLLGLGIRSLSVSPD 280 (293)
T ss_dssp HHHHHHHHHHHHHTT-EEEEESGGGGSHHHHHHHHHHT-SEEEE-GG
T ss_pred HHHHHHHHHHHhhcCcEEEEecCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 46888888889998865333333335888999999999988775543
No 337
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=24.59 E-value=1.2e+02 Score=18.20 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=17.7
Q ss_pred cEEEEEEecCCchhHhHHH-HcCeEEEEE
Q 031671 110 LCITLHVDPLRTPAVNLYK-KFGFQVDTL 137 (155)
Q Consensus 110 ~~~~~~~~~~n~~a~~~y~-~~Gf~~~~~ 137 (155)
..+.+.|. +-.++.+||+ .+||+....
T Consensus 6 ~Hv~i~V~-Dle~s~~FY~~~LG~~~~~~ 33 (144)
T cd07239 6 SHVVLNSP-DVDKTVAFYEDVLGFRVSDW 33 (144)
T ss_pred eEEEEECC-CHHHHHHHHHhcCCCEEEEe
Confidence 34555543 4567899995 589997644
No 338
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=24.49 E-value=1.3e+02 Score=16.21 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=11.1
Q ss_pred ceEEEEECCeEEEEEEE
Q 031671 52 GLLYIQIHGQVVGHVMY 68 (155)
Q Consensus 52 ~~~~~~~~~~~vG~~~~ 68 (155)
...++..+|+++|++..
T Consensus 85 ~~~Vv~~~g~~~Gvi~~ 101 (107)
T cd04610 85 KLPVVDENNNLVGIITN 101 (107)
T ss_pred eEeEECCCCeEEEEEEH
Confidence 34444446899998865
No 339
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=24.46 E-value=1.3e+02 Score=16.64 Aligned_cols=22 Identities=14% Similarity=0.354 Sum_probs=16.2
Q ss_pred CCChHHHHH--HHHHHHHHhCCcc
Q 031671 89 GQGHGEALL--EAAIKKCRTRTVL 110 (155)
Q Consensus 89 ~~Gig~~ll--~~~~~~~~~~g~~ 110 (155)
|.|+|+..+ ..+.+.+.++|+.
T Consensus 10 gsG~~TS~m~~~ki~~~l~~~gi~ 33 (94)
T PRK10310 10 GGAVATSTMAAEEIKELCQSHNIP 33 (94)
T ss_pred CCchhHHHHHHHHHHHHHHHCCCe
Confidence 678888777 5666777778875
No 340
>PRK08815 GTP cyclohydrolase; Provisional
Probab=24.27 E-value=1.8e+02 Score=21.21 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=21.7
Q ss_pred hCCccEEEEEEecCCchhHhHHHHcCeEEEEEEe
Q 031671 106 TRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 106 ~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 139 (155)
..|++++.+-++ |..-..-.+..|.++++..+
T Consensus 310 dLGV~kirLLTn--np~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 310 GLGITRVRLLTN--NPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HcCCCeEEECCC--CHHHHHHHHhCCCEEEEEec
Confidence 347778877633 44455667789999887664
No 341
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=24.24 E-value=2.1e+02 Score=18.55 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=38.5
Q ss_pred EEEEccCCCCCC---hHHHHHHHHHHHHHhCCc--cEEEEE-------EecCC-chhHhHHHHcCeEEE
Q 031671 80 KLAVKENYRGQG---HGEALLEAAIKKCRTRTV--LCITLH-------VDPLR-TPAVNLYKKFGFQVD 135 (155)
Q Consensus 80 ~~~v~~~~r~~G---ig~~ll~~~~~~~~~~g~--~~~~~~-------~~~~n-~~a~~~y~~~Gf~~~ 135 (155)
.+.+..+.-|+| +|+.||+..+..+.+.+. .++.+. +...| ....+-+.+.|-++.
T Consensus 87 ~v~i~~~~~G~g~~~LG~~Lm~~f~~~L~e~~~~p~~Ifl~n~gV~l~~~~~~~~e~Lk~L~~~Gv~I~ 155 (194)
T TIGR03527 87 VVVITSDKLGEGDEELGRILMKGFIYTLSELDPLPKRILFVNGGVKLTTEGSEVLEDLKELEKKGVEIL 155 (194)
T ss_pred EEEEecCcCCCCcHHHHHHHHHHHHHHHHhCCCCceEEEEEccceeeccCCchHHHHHHHHHHCCCEEE
Confidence 577889999998 999999999999998863 444443 22222 234455666776654
No 342
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=24.23 E-value=66 Score=17.50 Aligned_cols=44 Identities=25% Similarity=0.237 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhC-CccEEEEEEecCCchhHhHHHHcCeEEEEEE
Q 031671 95 ALLEAAIKKCRTR-TVLCITLHVDPLRTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 95 ~ll~~~~~~~~~~-g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~ 138 (155)
+||+.+-..-... |-..-...++..-.....-.++.||++.+..
T Consensus 26 ~LM~~LgA~~~~~lgn~f~ey~~~~~Pr~VLnKLE~~G~kVvsmt 70 (83)
T PF06399_consen 26 ELMAYLGAKKRTPLGNNFKEYHVDDPPRVVLNKLEKMGYKVVSMT 70 (83)
T ss_dssp HHHHHHT-EEE--TT-SS-EEEESS-HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHhcCceeccccCcceEEEcCCChHHHHHHHHhcCeEEEEEe
Confidence 5666664443222 4333344444433346677899999998754
No 343
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=24.22 E-value=1.2e+02 Score=19.88 Aligned_cols=28 Identities=7% Similarity=0.051 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecCC
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPLR 120 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~n 120 (155)
|+.++.++++.+.+.|++.+.+.+...+
T Consensus 30 ~~pli~~~l~~l~~~gi~~i~vv~~~~~ 57 (240)
T cd02538 30 DKPMIYYPLSTLMLAGIREILIISTPED 57 (240)
T ss_pred CEEhHHHHHHHHHHCCCCEEEEEeCcch
Confidence 4678888888888888888877655433
No 344
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=24.21 E-value=1.2e+02 Score=17.70 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=16.7
Q ss_pred EEEEEEecCCchhHhHHHH-cCeEEEEE
Q 031671 111 CITLHVDPLRTPAVNLYKK-FGFQVDTL 137 (155)
Q Consensus 111 ~~~~~~~~~n~~a~~~y~~-~Gf~~~~~ 137 (155)
.+.+.|. +-..++.||++ +||+....
T Consensus 3 HV~l~V~-Dl~~a~~FY~~~LG~~~~~~ 29 (131)
T cd08363 3 HMTFSVS-NLDKSISFYKHVFMEKLLVL 29 (131)
T ss_pred eEEEEEC-CHHHHHHHHHHhhCCEEecc
Confidence 3445544 44578889975 69887543
No 345
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=24.18 E-value=1.5e+02 Score=20.94 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=24.7
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhC
Q 031671 80 KLAVKENYRGQGHGEALLEAAIKKCRTR 107 (155)
Q Consensus 80 ~~~v~~~~r~~Gig~~ll~~~~~~~~~~ 107 (155)
.+.|+..++.-|+|..+...+.++++..
T Consensus 255 ~viV~Ea~~~~g~gaei~A~i~e~~f~~ 282 (324)
T COG0022 255 LVIVHEAPKTGGIGAEIAALIAEEAFDY 282 (324)
T ss_pred EEEEEeccccCChHHHHHHHHHHHHHHh
Confidence 4679999999999999999999988764
No 346
>PF12294 DUF3626: Protein of unknown function (DUF3626); InterPro: IPR022074 This family of proteins is found in bacteria. Proteins in this family are typically between 294 and 374 amino acids in length.
Probab=24.11 E-value=31 Score=23.81 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=17.6
Q ss_pred EEEEEEccCCCCCChHHHHHHHH
Q 031671 78 ITKLAVKENYRGQGHGEALLEAA 100 (155)
Q Consensus 78 i~~~~v~~~~r~~Gig~~ll~~~ 100 (155)
+..+.+||.|||..+++.+-..+
T Consensus 191 VeaLVlDPsyrgT~ve~~~~~la 213 (297)
T PF12294_consen 191 VEALVLDPSYRGTEVEAAARALA 213 (297)
T ss_pred hHHHhcCccccCChHHHHHHHHH
Confidence 45679999999998888654443
No 347
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=23.92 E-value=1.5e+02 Score=16.68 Aligned_cols=21 Identities=10% Similarity=0.302 Sum_probs=12.5
Q ss_pred cCCceEEEE-ECCeEEEEEEEE
Q 031671 49 KNSGLLYIQ-IHGQVVGHVMYA 69 (155)
Q Consensus 49 ~~~~~~~~~-~~~~~vG~~~~~ 69 (155)
.+...+.+. .+++++|.+...
T Consensus 97 ~~~~~lpVvd~~~~~vGiit~~ 118 (123)
T cd04627 97 EGISSVAVVDNQGNLIGNISVT 118 (123)
T ss_pred cCCceEEEECCCCcEEEEEeHH
Confidence 333434444 468899988753
No 348
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=23.91 E-value=1.3e+02 Score=21.63 Aligned_cols=48 Identities=23% Similarity=0.385 Sum_probs=30.5
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcC
Q 031671 80 KLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFG 131 (155)
Q Consensus 80 ~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~G 131 (155)
.+.|-| |-|||.+++..+.+-+...+-..+.+...... .....|++.|
T Consensus 5 ~Iavip---GDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~-~G~~~~~~~G 52 (348)
T COG0473 5 TIAVIP---GDGIGPEVMAAALKVLEAAAEFGLDFEFEEAE-VGGEAYDKHG 52 (348)
T ss_pred EEEEeC---CCCCCHHHHHHHHHHHHHhhhcCCceEEEEeh-hhHHHHHHcC
Confidence 355665 89999999999998887653222333333222 2366777777
No 349
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=23.63 E-value=1.5e+02 Score=21.25 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEE
Q 031671 95 ALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQV 134 (155)
Q Consensus 95 ~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~ 134 (155)
.+...+++.+.+.|++.+.++++.....-+.--.+.||..
T Consensus 123 ~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~ 162 (356)
T PF01070_consen 123 ELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSV 162 (356)
T ss_dssp HHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCC
T ss_pred HHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCC
Confidence 3455566668888999999999887777777778888843
No 350
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=23.61 E-value=1.7e+02 Score=18.59 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcC
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFG 131 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~G 131 (155)
|+-|+.++.+.+.+.++..+.+.+.........+.++.+
T Consensus 26 GkplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~ 64 (183)
T TIGR00454 26 GRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY 64 (183)
T ss_pred CEEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC
Confidence 578999999999887888888776653333333444333
No 351
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=23.53 E-value=1.5e+02 Score=19.27 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHH
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYK 128 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~ 128 (155)
|+.|+.++++.+.+.|++.+.+.+.........++.
T Consensus 30 g~pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~ 65 (233)
T cd06425 30 NKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLK 65 (233)
T ss_pred CcchHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHh
Confidence 457899999999888888888877754443344433
No 352
>PRK14763 coenzyme PQQ biosynthesis protein A; Provisional
Probab=23.49 E-value=43 Score=13.65 Aligned_cols=9 Identities=44% Similarity=1.028 Sum_probs=6.3
Q ss_pred HcCeEEEEE
Q 031671 129 KFGFQVDTL 137 (155)
Q Consensus 129 ~~Gf~~~~~ 137 (155)
++||+++--
T Consensus 11 R~GfEvTmY 19 (26)
T PRK14763 11 RFGFEVTMY 19 (26)
T ss_pred eeeeEEEEE
Confidence 678887653
No 353
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.35 E-value=99 Score=20.83 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=27.6
Q ss_pred cCCCCCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 85 ENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 85 ~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
+...|.--|..-+..++++|.+.|++.+.+++..
T Consensus 30 ~~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS 63 (239)
T PRK14839 30 PRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFS 63 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 3345667788899999999999999998888654
No 354
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=23.21 E-value=1.5e+02 Score=19.96 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhCCccEEEEEEecC------CchhHhHHHHcCeEEEEEEe
Q 031671 95 ALLEAAIKKCRTRTVLCITLHVDPL------RTPAVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 95 ~ll~~~~~~~~~~g~~~~~~~~~~~------n~~a~~~y~~~Gf~~~~~~~ 139 (155)
.-+...+++|++.|+..+.+....- -.+.++..++.||++..+..
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEecccc
Confidence 4556667799999999998873321 12467788899999876553
No 355
>cd00145 POLBc DNA polymerase type-B family catalytic domain. DNA-directed DNA polymerases elongate DNA by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA. DNA-directed DNA polymerases are multifunctional with both synthetic (polymerase) and degradative modes (exonucleases) and play roles in the processes of DNA replication, repair, and recombination. DNA-dependent DNA polymerases can be classified in six main groups based upon their phylogenetic relationships with E. coli polymerase I (class A), E. coli polymerase II (class B), E. coli polymerase III (class C), euryarchaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB, and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family B DNA polymerases include E. coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative DNA polymerases (alpha, delta, epsilon, and zeta), and eukaryotic viral and plasmid-borne enzymes. DNA polymerase is
Probab=23.03 E-value=1.3e+02 Score=21.19 Aligned_cols=27 Identities=15% Similarity=0.211 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHHHHHhCCccEEEEEEe
Q 031671 91 GHGEALLEAAIKKCRTRTVLCITLHVD 117 (155)
Q Consensus 91 Gig~~ll~~~~~~~~~~g~~~~~~~~~ 117 (155)
-.|+.++..+.+.+.+.|+..++..|+
T Consensus 136 ~~GR~~l~~~~~~ie~~g~~VIYGDTD 162 (323)
T cd00145 136 SFGREIIQDTIALVEEHGARVIYGDTD 162 (323)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 578999999999999888776665543
No 356
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=22.91 E-value=1.5e+02 Score=16.29 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=10.6
Q ss_pred eEEEEECCeEEEEEEE
Q 031671 53 LLYIQIHGQVVGHVMY 68 (155)
Q Consensus 53 ~~~~~~~~~~vG~~~~ 68 (155)
..++..+|+++|.+..
T Consensus 92 ~~Vv~~~~~~~Gvit~ 107 (113)
T cd04607 92 LPILDEEGRVVGLATL 107 (113)
T ss_pred EEEECCCCCEEEEEEh
Confidence 3344447889998865
No 357
>PRK13690 hypothetical protein; Provisional
Probab=22.89 E-value=2.2e+02 Score=18.30 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=38.4
Q ss_pred CCChHHHHHHHHHHHHHhCCccEEEEEEecCCchh---HhHHHHcCeEEEEEEec
Q 031671 89 GQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPA---VNLYKKFGFQVDTLIQG 140 (155)
Q Consensus 89 ~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a---~~~y~~~Gf~~~~~~~~ 140 (155)
+.-+|+.+++.+.+...+.|+.-..=.|..-|-+. ....++.||+++...+.
T Consensus 48 s~eva~~i~~~l~~~~~~~gi~LA~QcCEHLNRALvvEr~~a~~~~le~V~VvP~ 102 (184)
T PRK13690 48 SLEVAEAIVEALLEVLKETGIHLAVQGCEHLNRALVVEREVAEKYGLEIVTVVPV 102 (184)
T ss_pred hHHHHHHHHHHHHHHhhhcCcEEEEechhhhHHHHHHhHHHHHHcCCeEEEEecC
Confidence 34688999999999999998875554555556442 35788999999887653
No 358
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=22.86 E-value=1.9e+02 Score=18.89 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhC-CccEEEEEEecCCchhHhHHHHcCeEE
Q 031671 93 GEALLEAAIKKCRTR-TVLCITLHVDPLRTPAVNLYKKFGFQV 134 (155)
Q Consensus 93 g~~ll~~~~~~~~~~-g~~~~~~~~~~~n~~a~~~y~~~Gf~~ 134 (155)
|+-|+.++++.+.+. ++..+.+.+. +..-..+.+..|.+.
T Consensus 26 GkPli~~~i~~l~~~~~~~~ivv~t~--~~~i~~~~~~~~~~v 66 (238)
T PRK13368 26 GKPMIQHVYERAAQAAGVEEVYVATD--DQRIEDAVEAFGGKV 66 (238)
T ss_pred CcCHHHHHHHHHHhcCCCCeEEEECC--hHHHHHHHHHcCCeE
Confidence 678888999999887 7888877653 234455556667654
No 359
>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]
Probab=22.78 E-value=1.5e+02 Score=16.51 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=35.4
Q ss_pred eEEEEEEEEccCCCCCChHH--HHHHHHHHHHHhCCccEEEEEEecCC
Q 031671 75 SASITKLAVKENYRGQGHGE--ALLEAAIKKCRTRTVLCITLHVDPLR 120 (155)
Q Consensus 75 ~~~i~~~~v~~~~r~~Gig~--~ll~~~~~~~~~~g~~~~~~~~~~~n 120 (155)
.-.+.-..|.|.|+|+-.=. +++..++....+.++..+.+.+....
T Consensus 38 ~~Hf~i~IVS~~F~G~s~v~rHr~V~~~L~del~~~iHALal~t~t~~ 85 (90)
T COG0271 38 GSHFKVVIVSEAFQGKSLVARHRLVYSALKDELSGGIHALALHTYTPE 85 (90)
T ss_pred CCeEEEEEEchhhCCccHHHHHHHHHHHHHHHHhccceeeEeEeeccc
Confidence 34455678999999997654 78888888888888998888876543
No 360
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=22.71 E-value=1.4e+02 Score=17.25 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=17.9
Q ss_pred EEEEecCCchhHhHHHH-cCeEEEEEEe
Q 031671 113 TLHVDPLRTPAVNLYKK-FGFQVDTLIQ 139 (155)
Q Consensus 113 ~~~~~~~n~~a~~~y~~-~Gf~~~~~~~ 139 (155)
++.+..+=..|+.||++ +|++......
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~ 31 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTR 31 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEE
Confidence 34444444579999964 7998876553
No 361
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=22.68 E-value=1.5e+02 Score=16.27 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=15.9
Q ss_pred HHHhccCCceEEEEECCeEEEEEEEE
Q 031671 44 EELKKKNSGLLYIQIHGQVVGHVMYA 69 (155)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~vG~~~~~ 69 (155)
..+...+...+.+..+|+++|.+...
T Consensus 75 ~~~~~~~~~~~pVv~~~~~~Gvvt~~ 100 (105)
T cd04591 75 QLFRKLGLRHLLVVDEGRLVGIITRK 100 (105)
T ss_pred HHHHHcCCCEEEEEECCeEEEEEEhh
Confidence 33443444444444689999998753
No 362
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=22.53 E-value=2.5e+02 Score=18.88 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=40.5
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCch---hHhHHHHcCeEEEEEE
Q 031671 80 KLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTP---AVNLYKKFGFQVDTLI 138 (155)
Q Consensus 80 ~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~---a~~~y~~~Gf~~~~~~ 138 (155)
.++|.|-|-...-...|.++++-+ +..|+..+.+........ .++-|.+.|+......
T Consensus 4 ~vCv~pl~~~~~~~~~l~e~ie~~-~~~G~~~~~~Y~~~~~~~~~~vL~~Y~~~g~v~~~~w 64 (285)
T PF01697_consen 4 VVCVSPLFGNEDDWLQLIEWIEYH-RLLGVDHFYFYDNSSSPSVRKVLKEYERSGYVEVIPW 64 (285)
T ss_pred EEEccchhcccccHHHHHHHHHHH-HHhCCCEEEEEEccCCHHHHHhHHHHhhcCeEEEEEc
Confidence 567778777666566666666554 444999999887665544 4567889999877655
No 363
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=22.36 E-value=1.2e+02 Score=16.99 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHh---CCccEEEEEEecCCchhHhHHHHcCeEEEE
Q 031671 94 EALLEAAIKKCRT---RTVLCITLHVDPLRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 94 ~~ll~~~~~~~~~---~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~ 136 (155)
+.++.++...++. .|.. +.+.+ +-.++|||+...
T Consensus 34 ~~v~~~L~hiak~lkr~g~~---Llv~P------a~CkkCGfef~~ 70 (97)
T COG3357 34 KEVYDHLEHIAKSLKRKGKR---LLVRP------ARCKKCGFEFRD 70 (97)
T ss_pred HHHHHHHHHHHHHHHhCCce---EEecC------hhhcccCccccc
Confidence 4455555555543 4543 33444 457899998765
No 364
>PRK04017 hypothetical protein; Provisional
Probab=22.25 E-value=77 Score=19.13 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=17.3
Q ss_pred EEEEccCCCCCChHHHHHHHHHH
Q 031671 80 KLAVKENYRGQGHGEALLEAAIK 102 (155)
Q Consensus 80 ~~~v~~~~r~~Gig~~ll~~~~~ 102 (155)
-+.+||++.|.-+.+.+.+.+..
T Consensus 69 IILTD~D~~GekIr~~l~~~l~~ 91 (132)
T PRK04017 69 IILTDFDRKGEELAKKLSEYLQG 91 (132)
T ss_pred EEEECCCcchHHHHHHHHHHHHh
Confidence 57899999988777776665543
No 365
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=22.18 E-value=1.8e+02 Score=19.14 Aligned_cols=47 Identities=11% Similarity=0.119 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhCCccEEEEEEecCC-chhHhHHHHcCeEEEEEEecccc
Q 031671 95 ALLEAAIKKCRTRTVLCITLHVDPLR-TPAVNLYKKFGFQVDTLIQGFYS 143 (155)
Q Consensus 95 ~ll~~~~~~~~~~g~~~~~~~~~~~n-~~a~~~y~~~Gf~~~~~~~~~~~ 143 (155)
.++..+....+..|. +.+.+.... .....++++.||+.+....++..
T Consensus 198 ~~i~~~~~~L~~gG~--~~~~~~~~~~~~~~~~l~~~gf~~v~~~~d~~~ 245 (251)
T TIGR03534 198 RIIAQAPRLLKPGGW--LLLEIGYDQGEAVRALFEAAGFADVETRKDLAG 245 (251)
T ss_pred HHHHHHHHhcccCCE--EEEEECccHHHHHHHHHHhCCCCceEEEeCCCC
Confidence 344555555444453 344433222 23578889999998887766543
No 366
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.13 E-value=97 Score=21.37 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=25.5
Q ss_pred CCCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 88 RGQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 88 r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
.|.--|..-+..+.++|.+.|++.+.+++..
T Consensus 65 ~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS 95 (275)
T PRK14835 65 MGHEFGVQKAYEVLEWCLELGIPTVTIWVFS 95 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 4555688899999999999999998887554
No 367
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=21.93 E-value=2.1e+02 Score=17.85 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=23.2
Q ss_pred EccCCCCCChHHHHHHHHHHHHHhCCccEEEEE
Q 031671 83 VKENYRGQGHGEALLEAAIKKCRTRTVLCITLH 115 (155)
Q Consensus 83 v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~ 115 (155)
.+|+|.+.- ...+++.+.+.+++.|+.-..+.
T Consensus 63 td~~~k~~~-S~~lL~~~~~~~~~~g~~i~niD 94 (155)
T TIGR00151 63 TDPRWKGAD-SRVLLRHAVALIKEKGYRIGNVD 94 (155)
T ss_pred CChhhCCCC-HHHHHHHHHHHHHHcCCEEEEEE
Confidence 356666655 77899999999999887644443
No 368
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=21.85 E-value=2.1e+02 Score=17.67 Aligned_cols=43 Identities=9% Similarity=0.180 Sum_probs=25.3
Q ss_pred ChHHHHHHHH-HHHHHhCCccEEEEEEecCCchhHhHHHHcCeE
Q 031671 91 GHGEALLEAA-IKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQ 133 (155)
Q Consensus 91 Gig~~ll~~~-~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~ 133 (155)
|.|+..+..- ...+-+.|-+.+++.+........+-.+++|+.
T Consensus 9 G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~ 52 (187)
T cd01124 9 GTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWD 52 (187)
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCC
Confidence 6677665543 233335576777777665555555666677765
No 369
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=21.82 E-value=2.5e+02 Score=18.58 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=24.3
Q ss_pred CCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 89 GQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 89 ~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
|..-|..-+..+.++|.+.|++.+.+++..
T Consensus 19 Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS 48 (223)
T PF01255_consen 19 GHRAGAEKLKEIVEWCLELGIKYLTVYAFS 48 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-SEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 445677888999999999999999998765
No 370
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=21.81 E-value=1.5e+02 Score=16.08 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=14.6
Q ss_pred HHHHhccCCceEEEE-ECCeEEEEEEE
Q 031671 43 DEELKKKNSGLLYIQ-IHGQVVGHVMY 68 (155)
Q Consensus 43 ~~~~~~~~~~~~~~~-~~~~~vG~~~~ 68 (155)
.+.+...+...+.+. .+++++|.+..
T Consensus 79 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~ 105 (111)
T cd04590 79 LEEMRKERSHMAIVVDEYGGTAGLVTL 105 (111)
T ss_pred HHHHHhcCCcEEEEEECCCCEEEEeEH
Confidence 333333344444444 45889998864
No 371
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=21.65 E-value=2.1e+02 Score=19.12 Aligned_cols=43 Identities=14% Similarity=0.214 Sum_probs=30.5
Q ss_pred CCCCChHHHHHHHHHHHHHhC---CccEEEEEEecCCchhHhHHHHcC
Q 031671 87 YRGQGHGEALLEAAIKKCRTR---TVLCITLHVDPLRTPAVNLYKKFG 131 (155)
Q Consensus 87 ~r~~Gig~~ll~~~~~~~~~~---g~~~~~~~~~~~n~~a~~~y~~~G 131 (155)
+.-+|.-. -+.++.+.++. ..+.+....+.+|.-+.++|+.+-
T Consensus 72 ~~~rg~~q--Rn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR 117 (223)
T cd00218 72 LKPRGVEQ--RNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMR 117 (223)
T ss_pred CCcccHHH--HHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHh
Confidence 34445433 45667777766 667788889999999999998753
No 372
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=21.56 E-value=1.6e+02 Score=18.88 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=19.1
Q ss_pred EEEEEecCCchhHhHHHHcCeEEEEEEe
Q 031671 112 ITLHVDPLRTPAVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 112 ~~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 139 (155)
+.+.+. +-..+..+++++||.......
T Consensus 81 ~E~~v~-D~~~~~~il~~LGF~~~~~Vk 107 (178)
T COG1437 81 IEIEVS-DVEKALEILKRLGFKEVAVVK 107 (178)
T ss_pred EEEEeC-CHHHHHHHHHHcCCceeeEEE
Confidence 444443 334589999999999887654
No 373
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=21.49 E-value=1.6e+02 Score=16.10 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=11.0
Q ss_pred ceEEEEECCeEEEEEEE
Q 031671 52 GLLYIQIHGQVVGHVMY 68 (155)
Q Consensus 52 ~~~~~~~~~~~vG~~~~ 68 (155)
...++..+|+++|.+..
T Consensus 91 ~~~Vvd~~g~~~Gvvt~ 107 (113)
T cd04615 91 RLPVLDDKGKVGGIVTE 107 (113)
T ss_pred eeeEECCCCeEEEEEEH
Confidence 34444446789998864
No 374
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=21.44 E-value=1.6e+02 Score=16.07 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=12.8
Q ss_pred cCCceEEEEECCeEEEEEEE
Q 031671 49 KNSGLLYIQIHGQVVGHVMY 68 (155)
Q Consensus 49 ~~~~~~~~~~~~~~vG~~~~ 68 (155)
.+...+.+.++++++|.+..
T Consensus 87 ~~~~~l~Vv~~~~~~Gvvt~ 106 (112)
T cd04625 87 RHLRYLPVLDGGTLLGVISF 106 (112)
T ss_pred cCCCeeeEEECCEEEEEEEH
Confidence 33444444458899998865
No 375
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.35 E-value=1.2e+02 Score=20.51 Aligned_cols=33 Identities=15% Similarity=0.091 Sum_probs=27.2
Q ss_pred CCCCCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 86 NYRGQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 86 ~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
...|.--|..-+..++++|.+.|++.+.+++..
T Consensus 32 ~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS 64 (242)
T PRK14838 32 RSFGHQAGAETVHIITEEAARLGVKFLTLYTFS 64 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 345666788899999999999999999888654
No 376
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=21.34 E-value=2.8e+02 Score=19.91 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=28.9
Q ss_pred ChHHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEE
Q 031671 91 GHGEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDT 136 (155)
Q Consensus 91 Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~ 136 (155)
|+| -|=..+.++|+..|.+.+.++ .+..-.++.+++|-...-
T Consensus 174 G~G-GlGh~avQ~Aka~ga~Via~~---~~~~K~e~a~~lGAd~~i 215 (339)
T COG1064 174 GAG-GLGHMAVQYAKAMGAEVIAIT---RSEEKLELAKKLGADHVI 215 (339)
T ss_pred CCc-HHHHHHHHHHHHcCCeEEEEe---CChHHHHHHHHhCCcEEE
Confidence 455 566677788888886655555 555677888898876543
No 377
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=21.20 E-value=1.7e+02 Score=16.30 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhCCccEEEEEEe
Q 031671 95 ALLEAAIKKCRTRTVLCITLHVD 117 (155)
Q Consensus 95 ~ll~~~~~~~~~~g~~~~~~~~~ 117 (155)
.+++.+.+.+.+.|+.++...+.
T Consensus 51 ~~i~~~~e~~~~~G~~Rv~t~ik 73 (92)
T PF01910_consen 51 ALIKEAHEALFEAGAKRVVTVIK 73 (92)
T ss_dssp HHHHHHHHHHHCTTSSEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEE
Confidence 46777777788888887776644
No 378
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=21.17 E-value=1.6e+02 Score=16.19 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=11.7
Q ss_pred CceEEEEECCeEEEEEEE
Q 031671 51 SGLLYIQIHGQVVGHVMY 68 (155)
Q Consensus 51 ~~~~~~~~~~~~vG~~~~ 68 (155)
....++..+++++|.+..
T Consensus 91 ~~~pVv~~~~~~~Gvit~ 108 (114)
T cd04602 91 GKLPIVNDDGELVALVTR 108 (114)
T ss_pred CceeEECCCCeEEEEEEH
Confidence 334444446889998865
No 379
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=21.13 E-value=2.2e+02 Score=17.68 Aligned_cols=17 Identities=12% Similarity=0.309 Sum_probs=13.0
Q ss_pred hhHhHHHHcCeEEEEEE
Q 031671 122 PAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 122 ~a~~~y~~~Gf~~~~~~ 138 (155)
....+.++.||...-..
T Consensus 148 ~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 148 DTFDKLDERGFRYEIVA 164 (179)
T ss_pred HHHHHHHhCCCeEEEEE
Confidence 46788999999876543
No 380
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.08 E-value=94 Score=21.69 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=26.2
Q ss_pred CCCCChHHHHHHHHHHHHHhCCccEEEEEEe
Q 031671 87 YRGQGHGEALLEAAIKKCRTRTVLCITLHVD 117 (155)
Q Consensus 87 ~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~ 117 (155)
..|.-.|..-+..++++|.+.|++.+.++..
T Consensus 90 ~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaF 120 (296)
T PRK14827 90 TEGHKMGEAVVIDIACGAIELGIKWLSLYAF 120 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCEEEEeee
Confidence 3455568888999999999999999998866
No 381
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=21.04 E-value=90 Score=13.17 Aligned_cols=12 Identities=25% Similarity=0.363 Sum_probs=6.2
Q ss_pred ChHHHHHHHHHH
Q 031671 91 GHGEALLEAAIK 102 (155)
Q Consensus 91 Gig~~ll~~~~~ 102 (155)
|||....+.+++
T Consensus 18 GIG~~tA~~I~~ 29 (30)
T PF00633_consen 18 GIGPKTANAILS 29 (30)
T ss_dssp T-SHHHHHHHHH
T ss_pred CcCHHHHHHHHh
Confidence 666666555543
No 382
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=21.02 E-value=1.4e+02 Score=20.21 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHHHHHhC-CccEEEEEEecCCchhHhHHHHcCeEE
Q 031671 90 QGHGEALLEAAIKKCRTR-TVLCITLHVDPLRTPAVNLYKKFGFQV 134 (155)
Q Consensus 90 ~Gig~~ll~~~~~~~~~~-g~~~~~~~~~~~n~~a~~~y~~~Gf~~ 134 (155)
-|+|+.-+.+.+.++.++ |-+.+.+..++.| +.+++-.+.+..
T Consensus 11 GGvG~TTltAnLA~aL~~~G~~VlaID~dpqN--~Lrlhfg~~~~~ 54 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARLGESVLAIDLDPQN--LLRLHFGLPLDD 54 (243)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHH--HHHHhcCCCCcc
Confidence 499999999999988876 8888888877766 566665555543
No 383
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=21.00 E-value=1.6e+02 Score=16.48 Aligned_cols=17 Identities=18% Similarity=0.538 Sum_probs=12.6
Q ss_pred chhHhHHH-HcCeEEEEE
Q 031671 121 TPAVNLYK-KFGFQVDTL 137 (155)
Q Consensus 121 ~~a~~~y~-~~Gf~~~~~ 137 (155)
..+.+||. .+||+....
T Consensus 13 ~~a~~FY~~~lG~~~~~~ 30 (120)
T cd07254 13 EASIAFYSKLFGVEPTKV 30 (120)
T ss_pred HHHHHHHHHHhCCeEecc
Confidence 57999995 459987654
No 384
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=21.00 E-value=1.2e+02 Score=21.03 Aligned_cols=35 Identities=9% Similarity=0.172 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHH
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLY 127 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y 127 (155)
|+-++.++++.+.+.|++.+.+.+......-..++
T Consensus 33 gkPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~ 67 (297)
T TIGR01105 33 DKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHF 67 (297)
T ss_pred CEEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHH
Confidence 47799999999999999999988876544444444
No 385
>PRK11524 putative methyltransferase; Provisional
Probab=20.99 E-value=2.9e+02 Score=18.97 Aligned_cols=41 Identities=12% Similarity=0.255 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEE
Q 031671 96 LLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLI 138 (155)
Q Consensus 96 ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~ 138 (155)
.+..+...++..| .+++.+.......+.++.+.||.....+
T Consensus 62 ~l~~~~rvLK~~G--~i~i~~~~~~~~~~~~~~~~~f~~~~~i 102 (284)
T PRK11524 62 WIDECHRVLKKQG--TMYIMNSTENMPFIDLYCRKLFTIKSRI 102 (284)
T ss_pred HHHHHHHHhCCCc--EEEEEcCchhhhHHHHHHhcCcceEEEE
Confidence 3333333334444 3444444444445677888898766544
No 386
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=20.87 E-value=2e+02 Score=17.81 Aligned_cols=28 Identities=14% Similarity=0.135 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecCC
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPLR 120 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~n 120 (155)
|+-|+.++++.+.+.++..+.+.+....
T Consensus 24 g~pll~~~i~~l~~~~~~~iivv~~~~~ 51 (188)
T TIGR03310 24 GKTILEHVVDNALRLFFDEVILVLGHEA 51 (188)
T ss_pred CeeHHHHHHHHHHHcCCCcEEEEeCCcH
Confidence 5788888888888777777777666543
No 387
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=20.86 E-value=1.2e+02 Score=19.47 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
|+.|+.++++.+.+.|++.+.+.+..
T Consensus 28 g~pli~~~l~~l~~~~~~~iivv~~~ 53 (220)
T cd06426 28 GKPILETIIDRFIAQGFRNFYISVNY 53 (220)
T ss_pred CcchHHHHHHHHHHCCCcEEEEECcc
Confidence 45689999999998888888876654
No 388
>TIGR01440 conserved hypothetical protein TIGR01440. Members of this family are uncharacterized proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome.
Probab=20.85 E-value=2.4e+02 Score=17.93 Aligned_cols=52 Identities=8% Similarity=0.076 Sum_probs=37.8
Q ss_pred CCChHHHHHHHHHHHHHhCCccEEEEEEecCCchh---HhHHHHcCeEEEEEEec
Q 031671 89 GQGHGEALLEAAIKKCRTRTVLCITLHVDPLRTPA---VNLYKKFGFQVDTLIQG 140 (155)
Q Consensus 89 ~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a---~~~y~~~Gf~~~~~~~~ 140 (155)
+.-+|+.+++.+.+...+.|+.-..=.|..-|.+. ....++.||+++...+.
T Consensus 41 s~eva~~i~~~l~~~~~~~gi~lA~Q~CEHlNRALvvEr~~a~~~~le~V~VvP~ 95 (172)
T TIGR01440 41 SMEVAETIVNALDVVLKKTGVTLAFQGCEHINRALVMERSVAEPLGMEEVSVVPD 95 (172)
T ss_pred hHHHHHHHHHHHHHHhhhcCeEEEEechhhhhHHHHHhHHHHHHcCCceEEEecC
Confidence 34688999999999999988865554555556442 34788999999887553
No 389
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=20.84 E-value=2.5e+02 Score=18.20 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCe
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGF 132 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf 132 (155)
-..+++++.+.++.-|--.+...+.+.-..+...++++||
T Consensus 114 i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 114 IEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred HHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCC
Confidence 3567777777666555333333333333468899999999
No 390
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=20.77 E-value=2.1e+02 Score=19.09 Aligned_cols=44 Identities=16% Similarity=0.300 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCCccEEEEEE-ecCCchhHhHHHHcCeEEEEEEe
Q 031671 95 ALLEAAIKKCRTRTVLCITLHV-DPLRTPAVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 95 ~ll~~~~~~~~~~g~~~~~~~~-~~~n~~a~~~y~~~Gf~~~~~~~ 139 (155)
.++..+.+.++..|.- +...+ ..........+++.||+......
T Consensus 194 ~l~~~~~~~LkpgG~l-ilsgi~~~~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 194 ELAPDLARLLKPGGRL-ILSGILEEQADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred HHHHHHHHhcCCCcEE-EEEECcHhhHHHHHHHHHHCCCEEEEEEE
Confidence 3444444444444432 22222 22233467788999999876543
No 391
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=20.76 E-value=1.7e+02 Score=19.85 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHhCCccEEEEE
Q 031671 92 HGEALLEAAIKKCRTRTVLCITLH 115 (155)
Q Consensus 92 ig~~ll~~~~~~~~~~g~~~~~~~ 115 (155)
=|..+|..++..|...|++.|.+-
T Consensus 93 ~aleiM~KaI~LA~dLGIRtIQLA 116 (287)
T COG3623 93 QALEIMEKAIQLAQDLGIRTIQLA 116 (287)
T ss_pred HHHHHHHHHHHHHHHhCceeEeec
Confidence 356799999999999999988764
No 392
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.73 E-value=1.4e+02 Score=20.39 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=25.9
Q ss_pred CCCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 88 RGQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 88 r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
.|.--|..-+..+.++|.+.|++.+.+++..
T Consensus 51 ~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS 81 (256)
T PRK14828 51 QGHRAGAAKIGEFLGWCDETDVNVVTLYLLS 81 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 4566788899999999999999999887553
No 393
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=20.72 E-value=1.8e+02 Score=20.31 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=24.5
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhC
Q 031671 80 KLAVKENYRGQGHGEALLEAAIKKCRTR 107 (155)
Q Consensus 80 ~~~v~~~~r~~Gig~~ll~~~~~~~~~~ 107 (155)
-+.|+..|+.-|+|..+...+.+.++..
T Consensus 291 lvtVe~~~p~~gigaei~A~i~E~~fdy 318 (359)
T KOG0524|consen 291 LVTVEEGWPQFGIGAEICAQIMENAFDY 318 (359)
T ss_pred EEEEeccccccchhHHHHHHHHHHHHhh
Confidence 4678999999999999999999988764
No 394
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=20.71 E-value=1.6e+02 Score=15.78 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=14.8
Q ss_pred HHHhccCCceEEEEECCeEEEEEEE
Q 031671 44 EELKKKNSGLLYIQIHGQVVGHVMY 68 (155)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~vG~~~~ 68 (155)
+.+...+...+.+.++++++|.+..
T Consensus 75 ~~~~~~~~~~~~Vv~~~~~~G~it~ 99 (105)
T cd04599 75 RLMEEKKIERLPVLRERKLVGIITK 99 (105)
T ss_pred HHHHHcCCCEeeEEECCEEEEEEEH
Confidence 3333334444545556899998865
No 395
>PRK07198 hypothetical protein; Validated
Probab=20.68 E-value=1.7e+02 Score=21.53 Aligned_cols=47 Identities=15% Similarity=0.074 Sum_probs=34.3
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhCCccEE-EEEEecCCchhHhHHHHcCeEEEEEEe
Q 031671 84 KENYRGQGHGEALLEAAIKKCRTRTVLCI-TLHVDPLRTPAVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 84 ~~~~r~~Gig~~ll~~~~~~~~~~g~~~~-~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 139 (155)
.+++|..|+|.++|+.+ |++++ .+.+ +|..-..-....|-++++...
T Consensus 328 ~~D~RdyGlGAQILrdL-------GV~Km~RLLT--Nnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 328 VQDMRFQELMPDVLHWL-------GIRRIHRLVS--MSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred CCcceehhHHHHHHHHh-------CCChhhhhcC--CCHHHHHHHHhCCCEEEEEec
Confidence 35799999999888765 77777 4442 344456667889999987764
No 396
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=20.64 E-value=1.8e+02 Score=19.70 Aligned_cols=65 Identities=11% Similarity=0.162 Sum_probs=36.6
Q ss_pred eEEEEEEEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCC------chhHhHHHHcCeEEEEEEecc
Q 031671 75 SASITKLAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLR------TPAVNLYKKFGFQVDTLIQGF 141 (155)
Q Consensus 75 ~~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n------~~a~~~y~~~Gf~~~~~~~~~ 141 (155)
......++++|-|--.|+.- .+...++..+..|.. .++...... ...++++..+||......++|
T Consensus 110 ~~~fD~f~TDPPyT~~G~~L-FlsRgi~~Lk~~g~~-gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~~F 180 (243)
T PF01861_consen 110 RGKFDVFFTDPPYTPEGLKL-FLSRGIEALKGEGCA-GYFGFTHKEASPDKWLEVQRFLLEMGLVITDIIPDF 180 (243)
T ss_dssp SS-BSEEEE---SSHHHHHH-HHHHHHHTB-STT-E-EEEEE-TTT--HHHHHHHHHHHHTS--EEEEEEEEE
T ss_pred hcCCCEEEeCCCCCHHHHHH-HHHHHHHHhCCCCce-EEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHHhhh
Confidence 45667889999999988876 445555566666643 333322221 135677889999999988765
No 397
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=20.59 E-value=1.8e+02 Score=16.44 Aligned_cols=17 Identities=12% Similarity=0.356 Sum_probs=10.8
Q ss_pred ceEEEE-ECCeEEEEEEE
Q 031671 52 GLLYIQ-IHGQVVGHVMY 68 (155)
Q Consensus 52 ~~~~~~-~~~~~vG~~~~ 68 (155)
..+.+. .+++++|.+..
T Consensus 103 ~~l~Vvd~~~~~~Giit~ 120 (126)
T cd04642 103 HRVWVVDEEGKPIGVITL 120 (126)
T ss_pred cEEEEECCCCCEEEEEEH
Confidence 334444 35889998864
No 398
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=20.54 E-value=1.7e+02 Score=16.22 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=14.2
Q ss_pred HHHhccCC-ceEEEEECCeEEEEEEE
Q 031671 44 EELKKKNS-GLLYIQIHGQVVGHVMY 68 (155)
Q Consensus 44 ~~~~~~~~-~~~~~~~~~~~vG~~~~ 68 (155)
..+...+. ...++..+|+++|++..
T Consensus 91 ~~~~~~~~~~~~Vvd~~g~~~Gvit~ 116 (122)
T cd04635 91 ELMLEHDIGRLPVVNEKDQLVGIVDR 116 (122)
T ss_pred HHHHHcCCCeeeEEcCCCcEEEEEEh
Confidence 33333333 34444446889998875
No 399
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=20.43 E-value=2.4e+02 Score=18.51 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEE
Q 031671 93 GEALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVD 135 (155)
Q Consensus 93 g~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~ 135 (155)
|+-|+.+.++.+.+.++..+.+.+. .........+.|....
T Consensus 26 Gkpll~~~l~~l~~~~i~~ivvv~~--~~~i~~~~~~~~~~v~ 66 (245)
T PRK05450 26 GKPMIVRVYERASKAGADRVVVATD--DERIADAVEAFGGEVV 66 (245)
T ss_pred CcCHHHHHHHHHHhcCCCeEEEECC--cHHHHHHHHHcCCEEE
Confidence 5788888888888878888876543 2333444556666543
No 400
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.37 E-value=1.6e+02 Score=20.07 Aligned_cols=30 Identities=20% Similarity=0.160 Sum_probs=25.2
Q ss_pred CCChHHHHHHHHHHHHHhCCccEEEEEEec
Q 031671 89 GQGHGEALLEAAIKKCRTRTVLCITLHVDP 118 (155)
Q Consensus 89 ~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~ 118 (155)
|.--|..-+..++++|.+.|++.+.+++..
T Consensus 47 Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS 76 (251)
T PRK14830 47 GHKAGMDTVKKITKAASELGVKVLTLYAFS 76 (251)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEEe
Confidence 566788899999999999999988887544
No 401
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.32 E-value=1.1e+02 Score=22.59 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhCCccEEEEEEecCCchhHhHHHHcCeEEEEEEecccc
Q 031671 94 EALLEAAIKKCRTRTVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGFYS 143 (155)
Q Consensus 94 ~~ll~~~~~~~~~~g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~ 143 (155)
.+|++++++.+.++|+..+.. ..---....++|||.+.....-||.
T Consensus 189 qALi~yal~~l~~kGy~pl~~----P~i~rkeVm~~cg~~~~~d~~~~y~ 234 (455)
T KOG2509|consen 189 QALINYALDFLNAKGYTPLTT----PDILRKEVMQKCGQLPRFDEEQYYV 234 (455)
T ss_pred HHHHHHHHHHHHHcCCccccC----chhhhHHHHHHhccCcCCCcceEEe
Confidence 455666666666778776543 2223457899999998765555554
No 402
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
Probab=20.31 E-value=2.1e+02 Score=17.22 Aligned_cols=59 Identities=17% Similarity=0.262 Sum_probs=37.4
Q ss_pred EEEccCCCCCChHHHH-HHHHHHHHHhCCccEEEEEEec---CCchhHhHHHHcCeEEEEEEe
Q 031671 81 LAVKENYRGQGHGEAL-LEAAIKKCRTRTVLCITLHVDP---LRTPAVNLYKKFGFQVDTLIQ 139 (155)
Q Consensus 81 ~~v~~~~r~~Gig~~l-l~~~~~~~~~~g~~~~~~~~~~---~n~~a~~~y~~~Gf~~~~~~~ 139 (155)
+.+.-.-.+-=++..+ .+.+.+.+.+.|++.+.+.+.. ..+.+++-+...|+++.....
T Consensus 50 ~gfk~~rk~tpyAA~~aa~~aa~~a~e~Gi~~v~v~vkgpG~GreaAiraL~~ag~~i~~I~D 112 (129)
T COG0100 50 MGFKGSRKSTPYAAQLAAEDAAKKAKEHGIKSVEVKVKGPGPGREAAIRALAAAGLKITRIED 112 (129)
T ss_pred ceEcCCCCCCHHHHHHHHHHHHHHHHHhCccEEEEEEECCCCcHHHHHHHHHHccceEEEEEE
Confidence 4444443333344333 3344555567799999888765 456788889999999876543
No 403
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=20.31 E-value=1.7e+02 Score=16.09 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=10.6
Q ss_pred eEEEEECCeEEEEEEE
Q 031671 53 LLYIQIHGQVVGHVMY 68 (155)
Q Consensus 53 ~~~~~~~~~~vG~~~~ 68 (155)
..++..+|+++|.+..
T Consensus 101 ~~Vv~~~~~~~Gvvt~ 116 (122)
T cd04585 101 LPVVDDQGRLVGIITE 116 (122)
T ss_pred eeEECCCCcEEEEEEH
Confidence 4444445899998864
No 404
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=20.28 E-value=1.6e+02 Score=20.13 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=20.5
Q ss_pred CccEEEEEEecCCchhHhHHH-HcCeEEEEE
Q 031671 108 TVLCITLHVDPLRTPAVNLYK-KFGFQVDTL 137 (155)
Q Consensus 108 g~~~~~~~~~~~n~~a~~~y~-~~Gf~~~~~ 137 (155)
++..+.+.|. +=..+++||. .+||+....
T Consensus 145 ~i~Hi~l~V~-Dl~~s~~FY~~~LG~~~~~~ 174 (303)
T TIGR03211 145 RLDHCLLYGE-DVAENTRFFTEVLGFRLTEQ 174 (303)
T ss_pred eEEEEeEEeC-CHHHHHHHHHHhcCCEEEee
Confidence 4556766665 3467999995 599997544
No 405
>PLN02862 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Probab=20.27 E-value=2e+02 Score=19.09 Aligned_cols=40 Identities=10% Similarity=0.131 Sum_probs=25.9
Q ss_pred EEEEEEEEccCCCCCCh-HHHHHHHHHHHHHhCCccEEEEE
Q 031671 76 ASITKLAVKENYRGQGH-GEALLEAAIKKCRTRTVLCITLH 115 (155)
Q Consensus 76 ~~i~~~~v~~~~r~~Gi-g~~ll~~~~~~~~~~g~~~~~~~ 115 (155)
.-|+.++-+.+-+-+|+ ...|++.+.+.+++.|+.-..+.
T Consensus 114 GDIG~~FPdtd~~~Kg~~S~~lL~~a~~ll~~~G~~I~NvD 154 (216)
T PLN02862 114 PDIGQIFPDTDPKWKGADSSVFIKEAVRLMHEAGYEIGNLD 154 (216)
T ss_pred CcccccCCCCChhhCCCCHHHHHHHHHHHHHHcCCEEEEEE
Confidence 34555554444444555 67888999999998887644443
No 406
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=20.06 E-value=2.1e+02 Score=17.05 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=32.2
Q ss_pred EEEccCCCCCChHHHHHHHHHHHHHhCCccEEEEEEecCCc-hhHhHHHHcCe
Q 031671 81 LAVKENYRGQGHGEALLEAAIKKCRTRTVLCITLHVDPLRT-PAVNLYKKFGF 132 (155)
Q Consensus 81 ~~v~~~~r~~Gig~~ll~~~~~~~~~~g~~~~~~~~~~~n~-~a~~~y~~~Gf 132 (155)
+.+.+.-++ -.. =+..+.+.+.+.+.+.+.+.+.+.+. ++...++++|.
T Consensus 70 I~~e~~s~~--T~e-na~~~~~~~~~~~~~~i~lVTs~~H~~Ra~~~~~~~~~ 119 (150)
T cd06259 70 ILLEDRSTN--TYE-NARFSAELLRERGIRSVLLVTSAYHMPRALLIFRKAGL 119 (150)
T ss_pred eeecCCCCC--HHH-HHHHHHHHHHhcCCCeEEEECCHHHHHHHHHHHHHcCC
Confidence 445554443 222 24455567777788888888776654 58889999998
No 407
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=20.01 E-value=2.4e+02 Score=17.68 Aligned_cols=61 Identities=11% Similarity=0.071 Sum_probs=33.3
Q ss_pred EEEEEEEEccCCCCCChHHHHHHHHHHHHHhC---CccEEEEEEecCCchhHhHHHHcCeEEEEEEecccc
Q 031671 76 ASITKLAVKENYRGQGHGEALLEAAIKKCRTR---TVLCITLHVDPLRTPAVNLYKKFGFQVDTLIQGFYS 143 (155)
Q Consensus 76 ~~i~~~~v~~~~r~~Gig~~ll~~~~~~~~~~---g~~~~~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~ 143 (155)
.....+.+||.| +...++....+.++.. +. ++.+.+...+. ..+.+.+|++.+.-.+.+..
T Consensus 85 ~~~d~vv~DPPF----l~~ec~~k~a~ti~~L~k~~~-kii~~Tg~~~~--~~~~~ll~~~~~~f~p~h~~ 148 (162)
T PF10237_consen 85 GKFDVVVIDPPF----LSEECLTKTAETIRLLLKPGG-KIILCTGEEME--ELIKKLLGLRMCDFQPEHPN 148 (162)
T ss_pred CCceEEEECCCC----CCHHHHHHHHHHHHHHhCccc-eEEEecHHHHH--HHHHHHhCeeEEeEEecccc
Confidence 355678999999 4455554433333322 33 34444444332 23334448888876665544
Done!