Query 031672
Match_columns 155
No_of_seqs 109 out of 824
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 05:28:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031672.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031672hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 5.1E-53 1.7E-57 327.9 12.4 134 5-138 12-169 (174)
2 1ut7_A No apical meristem prot 100.0 1.8E-52 6.3E-57 324.1 12.7 135 5-139 14-167 (171)
3 1ldd_A APC2WHB, anaphase promo 62.0 3.8 0.00013 26.8 1.8 26 9-34 37-63 (74)
4 1cmb_A Met APO-repressor; DNA- 50.8 18 0.00061 24.6 3.7 34 15-53 50-85 (104)
5 3dct_B Nuclear receptor coacti 42.2 11 0.00038 18.5 1.2 14 15-28 2-15 (21)
6 2oh5_A Polyhedrin, C-polyhedri 29.6 41 0.0014 25.5 3.1 27 71-97 141-168 (248)
7 4dox_A Coat protein; all helix 28.7 30 0.001 27.2 2.3 23 2-24 149-171 (226)
8 2jv2_A Putative uncharacterize 24.3 34 0.0012 22.5 1.6 29 18-46 26-54 (83)
9 3g1g_A GAG polyprotein, capsid 21.1 58 0.002 21.8 2.3 21 15-35 62-82 (87)
10 3g21_A GAG polyprotein, capsid 18.4 51 0.0018 21.6 1.5 13 15-27 63-75 (77)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=5.1e-53 Score=327.93 Aligned_cols=134 Identities=28% Similarity=0.566 Sum_probs=122.3
Q ss_pred CCCCCCCeeEcCChHHHHH-HHHHHHcCCCCCCCceeecCCCCCCCCCCC------CCceEEEEeec---------cccc
Q 031672 5 TASTPIDVDFASTDENLFG-SLERMIRGSPLPCNVINDVNPYNHRPSNLP------DGVWYLVCSKE---------NTSA 68 (155)
Q Consensus 5 ~~~lp~G~RF~PtDeELv~-YL~~ki~g~plp~~~I~~~Dvy~~~Pw~L~------~~~wyFF~~~~---------~r~~ 68 (155)
...|||||||+|||||||. ||++|+.|.++|.++|+++|||++|||+|| +++||||+++. +|++
T Consensus 12 ~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~t 91 (174)
T 3ulx_A 12 ELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAA 91 (174)
T ss_dssp TTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEEE
T ss_pred ccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCceeec
Confidence 4489999999999999999 999999999999999999999999999999 57899999985 7899
Q ss_pred CCCeEEecCcceeEeeCCeEEEEEEEEeeeeCcCCCCCCcCeEEEEEEeCCCCCCC--------CCCceEEEEeeEEe
Q 031672 69 QHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYG--------DKKEEVFCLPCILM 138 (155)
Q Consensus 69 ~~G~Wk~~g~~~~I~~~g~~iG~k~~l~f~~~~~~~~~kT~W~M~EY~l~~~~~~~--------~~~~~VlCki~~~~ 138 (155)
++|+||++|++++|.++|.+||+||+|+||.++++++.+|+|+||||+|.+..... ..++|||||||++.
T Consensus 92 ~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~ 169 (174)
T 3ulx_A 92 GNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169 (174)
T ss_dssp TTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESC
T ss_pred CCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcC
Confidence 99999999999999988999999999999999999999999999999999875431 35789999999764
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.8e-52 Score=324.13 Aligned_cols=135 Identities=27% Similarity=0.510 Sum_probs=122.0
Q ss_pred CCCCCCCeeEcCChHHHHH-HHHHHHcCCCCCCCceeecCCCCCCCCCCC------CCceEEEEeec---------cccc
Q 031672 5 TASTPIDVDFASTDENLFG-SLERMIRGSPLPCNVINDVNPYNHRPSNLP------DGVWYLVCSKE---------NTSA 68 (155)
Q Consensus 5 ~~~lp~G~RF~PtDeELv~-YL~~ki~g~plp~~~I~~~Dvy~~~Pw~L~------~~~wyFF~~~~---------~r~~ 68 (155)
...|||||||+|||||||. ||++|+.|.+++.++|+++|||.+|||+|+ +++||||+++. +|++
T Consensus 14 ~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~t 93 (171)
T 1ut7_A 14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVA 93 (171)
T ss_dssp SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEE
T ss_pred ccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccccC
Confidence 3589999999999999999 999999999999999999999999999998 67899999985 7899
Q ss_pred CCCeEEecCcceeEeeCCeEEEEEEEEeeeeCcCCCCCCcCeEEEEEEeCCCCCC---CCCCceEEEEeeEEee
Q 031672 69 QHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLY---GDKKEEVFCLPCILMH 139 (155)
Q Consensus 69 ~~G~Wk~~g~~~~I~~~g~~iG~k~~l~f~~~~~~~~~kT~W~M~EY~l~~~~~~---~~~~~~VlCki~~~~~ 139 (155)
++|+||++|+++.|..+|.+||+||+|+||.++++++.+|+|+||||+|.+.... ...++|||||||++..
T Consensus 94 ~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~ 167 (171)
T 1ut7_A 94 GSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQS 167 (171)
T ss_dssp TTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC-
T ss_pred CCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCC
Confidence 9999999999999999889999999999999999999999999999999987532 2467899999998753
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=61.99 E-value=3.8 Score=26.81 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.4
Q ss_pred CCCeeEcC-ChHHHHHHHHHHHcCCCC
Q 031672 9 PIDVDFAS-TDENLFGSLERMIRGSPL 34 (155)
Q Consensus 9 p~G~RF~P-tDeELv~YL~~ki~g~pl 34 (155)
|.|+.|+. |++||-.||..++....+
T Consensus 37 ~~~~~~~~it~~eL~~fL~~~v~e~kL 63 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEGYLNTLADEGRL 63 (74)
T ss_dssp CGGGCCTTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhCCeE
Confidence 56889998 999999999999987754
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=50.78 E-value=18 Score=24.61 Aligned_cols=34 Identities=26% Similarity=0.523 Sum_probs=26.8
Q ss_pred cCChHHHHH--HHHHHHcCCCCCCCceeecCCCCCCCCCCC
Q 031672 15 ASTDENLFG--SLERMIRGSPLPCNVINDVNPYNHRPSNLP 53 (155)
Q Consensus 15 ~PtDeELv~--YL~~ki~g~plp~~~I~~~Dvy~~~Pw~L~ 53 (155)
|-|..||++ || .-..|+|||.+ .|+-...|.++|
T Consensus 50 HATNSELLCEAFL-HA~TGQPLP~D----~Dl~Kd~~d~iP 85 (104)
T 1cmb_A 50 HATNSELLCEAFL-HAFTGQPLPDD----ADLRKERSDEIP 85 (104)
T ss_dssp CCSHHHHHHHHHH-HHHHCCCCCCG----GGGBTTSCSCSC
T ss_pred hcccHHHHHHHHH-HHhcCCCCCCc----hhhhhcCCccch
Confidence 568899999 55 45689999965 378888888887
No 5
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=42.21 E-value=11 Score=18.55 Aligned_cols=14 Identities=29% Similarity=0.256 Sum_probs=10.7
Q ss_pred cCChHHHHHHHHHH
Q 031672 15 ASTDENLFGSLERM 28 (155)
Q Consensus 15 ~PtDeELv~YL~~k 28 (155)
.+.|.+|+.||.-|
T Consensus 2 e~kdhqllrylldk 15 (21)
T 3dct_B 2 ESKDHQLLRYLLDK 15 (26)
T ss_pred chhHHHHHHHHHcc
Confidence 36789999988754
No 6
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=29.62 E-value=41 Score=25.47 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=22.6
Q ss_pred CeEEecCcc-eeEeeCCeEEEEEEEEee
Q 031672 71 GQWRAKGET-CEIFSNSYIIGWRTTLEF 97 (155)
Q Consensus 71 G~Wk~~g~~-~~I~~~g~~iG~k~~l~f 97 (155)
--|.++|-. +.|..+|+++|+...|..
T Consensus 141 hpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 141 HPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred CCccccCceEEEeeecceEeeeeeeeec
Confidence 458899866 778889999999998875
No 7
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=28.73 E-value=30 Score=27.15 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=17.8
Q ss_pred CCCCCCCCCCeeEcCChHHHHHH
Q 031672 2 CPPTASTPIDVDFASTDENLFGS 24 (155)
Q Consensus 2 ~~~~~~lp~G~RF~PtDeELv~Y 24 (155)
.|.+.+-+-|..+.||++|++.+
T Consensus 149 n~AAl~P~~GLiR~PT~~E~iA~ 171 (226)
T 4dox_A 149 NPAAMQPPSGLTRSPTQEERIAN 171 (226)
T ss_dssp CTTSCCCTTCCSSCCCHHHHHHH
T ss_pred CccccCCCCCCCCCCCHHHHHHH
Confidence 34445556699999999999993
No 8
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=24.26 E-value=34 Score=22.47 Aligned_cols=29 Identities=3% Similarity=0.149 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHcCCCCCCCceeecCCCC
Q 031672 18 DENLFGSLERMIRGSPLPCNVINDVNPYN 46 (155)
Q Consensus 18 DeELv~YL~~ki~g~plp~~~I~~~Dvy~ 46 (155)
|.++..||++++.|+|+-..-+..+++++
T Consensus 26 ~~~~~~~lk~~L~grPV~~GD~I~i~~~G 54 (83)
T 2jv2_A 26 PPDFVDVIRIKLQGKTVRTGDVIGISILG 54 (83)
T ss_dssp CHHHHHHHHHHHTTSEECTTCEEEEEETT
T ss_pred CccHHHHHHHHHCCCCccCCCEEEEeeCC
Confidence 45555599999999997654343455543
No 9
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=21.11 E-value=58 Score=21.81 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=13.3
Q ss_pred cCChHHHHHHHHHHHcCCCCC
Q 031672 15 ASTDENLFGSLERMIRGSPLP 35 (155)
Q Consensus 15 ~PtDeELv~YL~~ki~g~plp 35 (155)
.|+.+|||.|+..|..-.|+.
T Consensus 62 ~~~~~e~Ik~~l~~~~~~~~~ 82 (87)
T 3g1g_A 62 LTTPGEIIKYVLDRQKTAPLT 82 (87)
T ss_dssp CCSHHHHHHHHHHHHC-----
T ss_pred CCChHHHHHHHHHHhhcCCcc
Confidence 367899999888887766654
No 10
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=18.35 E-value=51 Score=21.56 Aligned_cols=13 Identities=8% Similarity=0.046 Sum_probs=9.8
Q ss_pred cCChHHHHHHHHH
Q 031672 15 ASTDENLFGSLER 27 (155)
Q Consensus 15 ~PtDeELv~YL~~ 27 (155)
.|+.+|||.||..
T Consensus 63 ~~~~~e~ik~~~~ 75 (77)
T 3g21_A 63 LTTPGEIIKYVLD 75 (77)
T ss_dssp CCSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHc
Confidence 4778999996654
Done!