BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031673
(155 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P011|EMC4_DANRE ER membrane protein complex subunit 4 OS=Danio rerio GN=emc4 PE=2
SV=1
Length = 189
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 13/142 (9%)
Query: 13 RWAVDFT-DNSTTPSTR-----DIADPPGFSRASQDQDDSTLSRQKKDAEANWKSQKAWE 66
+WAV+ + NS + S R D+ P G+S D ++A+ N ++ W+
Sbjct: 24 KWAVELSLGNSRSRSDRQGKDGDVMYPVGYS------DKPVPDTSVQEADRNLVEKRCWD 77
Query: 67 VAQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKDSKVDLL 126
VA P K + M F+M+M+G+T+ +F I + W+PI AL + F+ + S L
Sbjct: 78 VALGPLKQIPMNLFIMYMSGNTISIFPIMMVCMMAWRPIQALMSMSATFKLLESSSQQWL 137
Query: 127 GPKLLFIALNLGGLALGVWKVR 148
L+++ NL G AL ++K +
Sbjct: 138 -QGLVYLIGNLLGSALAIYKCQ 158
>sp|Q6GR43|EMC4_XENLA ER membrane protein complex subunit 4 OS=Xenopus laevis GN=emc4
PE=2 SV=1
Length = 180
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 14/149 (9%)
Query: 7 VMGSGRR--WAVDFTDNSTTPST-----RDIADPPGFSRASQDQDDSTLSRQKKDAEANW 59
V GRR WA++F + +D P G+S D+ S Q+ D
Sbjct: 8 VTNRGRRFKWAIEFGSGGSRGRGERGGLQDSMYPVGYS----DKQVPDTSVQESDHILVE 63
Query: 60 KSQKAWEVAQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYK 119
K + W++A P K + M F+M+MAG+T+ +F I + W+PI AL F+ +
Sbjct: 64 K--RCWDIALGPLKQIPMNLFIMYMAGNTISIFPIMMVCMMAWRPIQALLATPATFKLLE 121
Query: 120 DSKVDLLGPKLLFIALNLGGLALGVWKVR 148
S L L+++ NL GLALGV+K +
Sbjct: 122 SSGQRFLQ-GLVYLIGNLLGLALGVYKCQ 149
>sp|O94520|YQ13_SCHPO ER membrane protein complex subunit 4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1281.03c PE=3 SV=1
Length = 193
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 46 STLSRQKKDAEANWKSQKAWEVAQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPI 105
S ++++++ + + +KAWE+A +P K + M + +M+G+++ +FSI T L P+
Sbjct: 57 SIFAKREEELQKDLLLKKAWELAYSPLKQIPMNAILAYMSGNSLQIFSIMTTLMLLVNPL 116
Query: 106 SALQGVGKVFEPYKDSKVDLLGPKL-LFIALNLGGLALGVWKVR 148
A+ G F P+K + L P + +I L + +GV+K++
Sbjct: 117 KAITSTGSAFTPFKGTHPGTLWPAMGAYILFQLLLMGIGVYKLQ 160
>sp|Q6PBF7|EMC4_XENTR ER membrane protein complex subunit 4 OS=Xenopus tropicalis GN=emc4
PE=2 SV=1
Length = 180
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
Query: 7 VMGSGRR--WAVDFTDNSTTPST-----RDIADPPGFSRASQDQDDSTLSRQKKDAEANW 59
V GRR WA++F + +D P G+S D+ S Q+ D
Sbjct: 8 VANRGRRFKWAIEFGSGGSRGRGERGGLQDSMYPVGYS----DKQVPDTSVQESDHILVE 63
Query: 60 KSQKAWEVAQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYK 119
K + W++A P K + M F+M+MAG+T+ +F I + W+PI AL F+ +
Sbjct: 64 K--RCWDIALGPLKQIPMNLFIMYMAGNTISIFPIMMVCMMAWRPIQALLATPATFKLLE 121
Query: 120 DSKVDLLGPKLLFIALNLGGLALGVWKVR 148
S L L+++ NL GLAL V+K +
Sbjct: 122 SSGQRFLQ-GLVYLIGNLLGLALAVYKCQ 149
>sp|Q9CZX9|EMC4_MOUSE ER membrane protein complex subunit 4 OS=Mus musculus GN=Emc4 PE=2
SV=1
Length = 183
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 61 SQKAWEVAQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120
++ W++A P K + M F+M+MAG+T+ +F + W+PI AL + F+ +
Sbjct: 66 EKRCWDIALGPLKQIPMNLFIMYMAGNTISIFPTMMVCMMAWRPIQALMAISATFKMLES 125
Query: 121 SKVDLLGPKLLFIALNLGGLALGVWKVR 148
S L L+++ NL GLAL V+K +
Sbjct: 126 SSQKFL-QGLVYLIGNLMGLALAVYKCQ 152
>sp|Q5RC35|EMC4_PONAB ER membrane protein complex subunit 4 OS=Pongo abelii GN=EMC4 PE=2
SV=1
Length = 183
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 61 SQKAWEVAQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120
++ W++A P K + M F+M+MAG+T+ +F + W+PI AL + F+ +
Sbjct: 66 EKRCWDIALGPLKQIPMNLFIMYMAGNTISIFPTMMVCMMAWRPIQALMAISATFKMLES 125
Query: 121 SKVDLLGPKLLFIALNLGGLALGVWKVR 148
S L L+++ NL GLAL V+K +
Sbjct: 126 SSQKFL-QGLVYLIGNLMGLALAVYKCQ 152
>sp|Q5J8M3|EMC4_HUMAN ER membrane protein complex subunit 4 OS=Homo sapiens GN=EMC4 PE=1
SV=2
Length = 183
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 61 SQKAWEVAQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120
++ W++A P K + M F+M+MAG+T+ +F + W+PI AL + F+ +
Sbjct: 66 EKRCWDIALGPLKQIPMNLFIMYMAGNTISIFPTMMVCMMAWRPIQALMAISATFKMLES 125
Query: 121 SKVDLLGPKLLFIALNLGGLALGVWKVR 148
S L L+++ NL GLAL V+K +
Sbjct: 126 SSQKFL-QGLVYLIGNLMGLALAVYKCQ 152
>sp|Q3T0K8|EMC4_BOVIN ER membrane protein complex subunit 4 OS=Bos taurus GN=EMC4 PE=2
SV=1
Length = 183
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 61 SQKAWEVAQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120
++ W++A P K + M F+M+MAG+T+ +F + W+PI AL + F+ +
Sbjct: 66 EKRCWDIALGPLKQIPMNLFIMYMAGNTISIFPTMMVCMMAWRPIQALMAISATFKMLES 125
Query: 121 SKVDLLGPKLLFIALNLGGLALGVWKVR 148
S L L+++ NL GLAL V+K +
Sbjct: 126 SSQKFL-QGLVYLIGNLMGLALAVYKCQ 152
>sp|B5XB24|EMC4_SALSA ER membrane protein complex subunit 4 OS=Salmo salar GN=emc4 PE=2
SV=1
Length = 188
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 29 DIADPPGFSRASQDQDDSTLSRQKKDAEANWKSQKAWEVAQAPFKNLMMMGFMMWMAGST 88
D+ P G+S D ++ + N ++ W+VA P K + M F+M+M+G+T
Sbjct: 45 DVMYPIGYS------DKPVPDTSIQETDKNLVEKRCWDVALGPLKQIPMNLFIMYMSGNT 98
Query: 89 VHLFSIGITFSALWQPISALQGVGKVFEPYKDSKVDLLGPKLLFIALNLGGLALGVWKVR 148
+ +F I + W+PI AL + F+ ++S L L++ NL G AL ++K +
Sbjct: 99 ISIFPIMMVCMMAWRPIQALMSMSATFKLLENSNQQWL-QGLVYSVGNLLGSALAIYKCQ 157
>sp|P53073|EMC4_YEAST ER membrane protein complex subunit 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=EMC4 PE=1 SV=1
Length = 190
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 18 FTDNSTTPSTRDIADPPGF---------SRASQDQDDSTLSRQKKDAEANWKSQKAWEVA 68
+ + ++ + PPGF +R QD T S +K+ + QKAW++A
Sbjct: 18 YIEKYNIQNSNTLPSPPGFEGNSSKGNVTRKQQDATSQTTSLAQKNQITVLQVQKAWQIA 77
Query: 69 QAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKDSK 122
P K++ M FM +M+G+++ + I L PI A+ F+P +K
Sbjct: 78 LQPAKSIPMNIFMSYMSGTSLQIIPIMTALMLLSGPIKAIFSTRSAFKPVLGNK 131
>sp|Q8WHX6|NU6C_PSINU NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Psilotum
nudum GN=ndhG PE=3 SV=1
Length = 188
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 83 WMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKDSKVDLLGPKLL 131
+ +++ LF + I W I +++ K+FEP S V L+G +LL
Sbjct: 102 LIVCTSLFLFLVSIILDTSWSQIYSIKKSTKIFEPILKSNVQLIGSQLL 150
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,152,717
Number of Sequences: 539616
Number of extensions: 2360087
Number of successful extensions: 5465
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5449
Number of HSP's gapped (non-prelim): 16
length of query: 155
length of database: 191,569,459
effective HSP length: 107
effective length of query: 48
effective length of database: 133,830,547
effective search space: 6423866256
effective search space used: 6423866256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)