Query 031673
Match_columns 155
No_of_seqs 120 out of 191
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 05:30:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zsu_A TLL2057 protein, cyanoq 22.7 26 0.0009 26.3 0.9 57 29-87 8-73 (130)
2 4a3n_A Transcription factor SO 20.7 17 0.00059 22.7 -0.4 10 76-85 6-15 (71)
3 3u2b_C Transcription factor SO 18.7 20 0.0007 23.0 -0.4 10 76-85 6-15 (79)
4 1i11_A Transcription factor SO 17.1 24 0.00081 23.0 -0.4 10 76-85 8-17 (81)
5 3f27_D Transcription factor SO 16.9 24 0.00082 23.0 -0.4 10 76-85 10-19 (83)
6 2l6a_A Nacht, LRR and PYD doma 16.8 1.7E+02 0.0057 20.5 4.1 18 61-78 68-85 (102)
7 2k1a_A Integrin alpha-IIB; sin 16.4 69 0.0024 19.5 1.7 9 140-148 27-35 (42)
8 2lef_A LEF-1 HMG, protein (lym 16.3 25 0.00086 23.2 -0.4 10 76-85 6-15 (86)
9 2knc_A Integrin alpha-IIB; tra 15.4 74 0.0025 20.4 1.7 10 139-148 28-37 (54)
10 2l8s_A Integrin alpha-1; trans 15.2 75 0.0026 20.5 1.7 10 139-148 25-34 (54)
No 1
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=22.68 E-value=26 Score=26.29 Aligned_cols=57 Identities=14% Similarity=0.293 Sum_probs=33.3
Q ss_pred CCCCCCCCCCCCCCC-----cchhhhhhhhhHHHHHHHHHHHH----HhhhhhhhHHHHHHHHHHhCC
Q 031673 29 DIADPPGFSRASQDQ-----DDSTLSRQKKDAEANWKSQKAWE----VAQAPFKNLMMMGFMMWMAGS 87 (155)
Q Consensus 29 ~lp~PpGy~~~~~~~-----~~~~~~~~~~~~~~~Lk~KkaWe----iA~~P~K~ipMn~FMmyMsGn 87 (155)
..+.||.|++..... ..-.....+-.+...|..+|-|. +-.+|+.++-.+ |.|.+.|
T Consensus 8 ~~~~pptysp~~i~~iq~y~~~i~~~r~Rl~eL~~lI~~~~W~~~Rn~IhGPlg~lr~~--m~~l~~~ 73 (130)
T 3zsu_A 8 TTPPPPTYSELQITRIQDYLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMD--MRALNRN 73 (130)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHTHHHHHHHH--HHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhchHHHHHHH--HHHHHHh
Confidence 456799999752110 00111122335678899999993 567888888877 6666554
No 2
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=20.70 E-value=17 Score=22.75 Aligned_cols=10 Identities=40% Similarity=0.873 Sum_probs=8.1
Q ss_pred HHHHHHHHHh
Q 031673 76 MMMGFMMWMA 85 (155)
Q Consensus 76 pMn~FMmyMs 85 (155)
|+|.||+|+.
T Consensus 6 P~~af~lf~~ 15 (71)
T 4a3n_A 6 PMNAFMVWAK 15 (71)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7889999864
No 3
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=18.66 E-value=20 Score=23.00 Aligned_cols=10 Identities=40% Similarity=0.856 Sum_probs=8.1
Q ss_pred HHHHHHHHHh
Q 031673 76 MMMGFMMWMA 85 (155)
Q Consensus 76 pMn~FMmyMs 85 (155)
|+|.||+|+.
T Consensus 6 P~naf~lf~~ 15 (79)
T 3u2b_C 6 PMNAFMVWSQ 15 (79)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7889998874
No 4
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=17.14 E-value=24 Score=22.99 Aligned_cols=10 Identities=40% Similarity=0.873 Sum_probs=8.2
Q ss_pred HHHHHHHHHh
Q 031673 76 MMMGFMMWMA 85 (155)
Q Consensus 76 pMn~FMmyMs 85 (155)
|+|.||+|+.
T Consensus 8 P~naf~lf~~ 17 (81)
T 1i11_A 8 PMNAFMVWAK 17 (81)
T ss_dssp SCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7889998875
No 5
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=16.91 E-value=24 Score=22.95 Aligned_cols=10 Identities=40% Similarity=0.873 Sum_probs=8.3
Q ss_pred HHHHHHHHHh
Q 031673 76 MMMGFMMWMA 85 (155)
Q Consensus 76 pMn~FMmyMs 85 (155)
|+|.||+|+.
T Consensus 10 P~~af~lf~~ 19 (83)
T 3f27_D 10 PMNAFMVWAK 19 (83)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7899999974
No 6
>2l6a_A Nacht, LRR and PYD domains-containing protein 12; NLRP12, pyrin, death domain, signaling protein; NMR {Homo sapiens}
Probab=16.77 E-value=1.7e+02 Score=20.49 Aligned_cols=18 Identities=22% Similarity=0.558 Sum_probs=14.6
Q ss_pred HHHHHHHhhhhhhhHHHH
Q 031673 61 SQKAWEVAQAPFKNLMMM 78 (155)
Q Consensus 61 ~KkaWeiA~~P~K~ipMn 78 (155)
.+.||++++..+.+|..+
T Consensus 68 e~~A~~vt~~if~~mn~~ 85 (102)
T 2l6a_A 68 PEEAWRLALSTFERINRK 85 (102)
T ss_dssp HHHHHHHHHHHHGGGTCH
T ss_pred HHHHHHHHHHHHHHcCHH
Confidence 348999999999987654
No 7
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=16.41 E-value=69 Score=19.50 Aligned_cols=9 Identities=56% Similarity=1.110 Sum_probs=6.3
Q ss_pred HHHHHHhhc
Q 031673 140 LALGVWKVR 148 (155)
Q Consensus 140 l~lglyK~~ 148 (155)
+.++||||.
T Consensus 27 i~~~LwK~G 35 (42)
T 2k1a_A 27 LVLAMWKVG 35 (42)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 346889984
No 8
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=16.33 E-value=25 Score=23.17 Aligned_cols=10 Identities=30% Similarity=0.693 Sum_probs=8.1
Q ss_pred HHHHHHHHHh
Q 031673 76 MMMGFMMWMA 85 (155)
Q Consensus 76 pMn~FMmyMs 85 (155)
|||+||+|+.
T Consensus 6 P~naf~lf~~ 15 (86)
T 2lef_A 6 PLNAFMLYMK 15 (86)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7888888875
No 9
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=15.35 E-value=74 Score=20.43 Aligned_cols=10 Identities=50% Similarity=0.850 Sum_probs=6.8
Q ss_pred HHHHHHHhhc
Q 031673 139 GLALGVWKVR 148 (155)
Q Consensus 139 ~l~lglyK~~ 148 (155)
.+.++||||.
T Consensus 28 li~~~LwK~G 37 (54)
T 2knc_A 28 ILVLAMWKVG 37 (54)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcC
Confidence 3446889984
No 10
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=15.17 E-value=75 Score=20.48 Aligned_cols=10 Identities=40% Similarity=0.820 Sum_probs=6.8
Q ss_pred HHHHHHHhhc
Q 031673 139 GLALGVWKVR 148 (155)
Q Consensus 139 ~l~lglyK~~ 148 (155)
.+.++||||.
T Consensus 25 Lii~~LwK~G 34 (54)
T 2l8s_A 25 LLILALWKIG 34 (54)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcC
Confidence 3446889984
Done!