Query 031673
Match_columns 155
No_of_seqs 120 out of 191
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 05:30:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031673.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031673hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i11a_ a.21.1.1 (A:) Sox-5 {M 26.8 5.2 0.00038 24.4 -0.4 10 76-85 6-15 (70)
2 d1gt0d_ a.21.1.1 (D:) Sox-2 {M 24.6 6 0.00044 24.9 -0.4 10 76-85 6-15 (80)
3 d2lefa_ a.21.1.1 (A:) Lymphoid 21.5 7.6 0.00055 24.5 -0.4 10 76-85 6-15 (86)
4 d1j46a_ a.21.1.1 (A:) SRY {Hum 17.0 11 0.0008 23.6 -0.4 10 76-85 8-17 (85)
5 d1qrva_ a.21.1.1 (A:) HMG-D {D 14.1 14 0.0011 22.2 -0.4 10 76-85 7-16 (73)
6 d1ckta_ a.21.1.1 (A:) High mob 11.9 18 0.0013 21.4 -0.4 10 76-85 5-14 (71)
7 d1wgfa_ a.21.1.1 (A:) Nucleola 9.9 24 0.0017 21.9 -0.4 11 76-86 24-34 (90)
8 d1k99a_ a.21.1.1 (A:) Nucleola 9.8 25 0.0018 21.8 -0.4 11 76-86 14-24 (91)
9 d1v64a_ a.21.1.1 (A:) Nucleola 8.9 29 0.0021 22.3 -0.3 10 76-85 21-30 (108)
10 d2iuba2 f.17.3.1 (A:286-349) M 8.8 1E+02 0.0076 17.8 2.4 25 89-113 6-30 (64)
No 1
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.83 E-value=5.2 Score=24.36 Aligned_cols=10 Identities=40% Similarity=0.873 Sum_probs=8.0
Q ss_pred HHHHHHHHHh
Q 031673 76 MMMGFMMWMA 85 (155)
Q Consensus 76 pMn~FMmyMs 85 (155)
|||+||+|+.
T Consensus 6 P~nay~lf~~ 15 (70)
T d1i11a_ 6 PMNAFMVWAK 15 (70)
T ss_dssp SCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7888888874
No 2
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.63 E-value=6 Score=24.89 Aligned_cols=10 Identities=40% Similarity=0.843 Sum_probs=8.1
Q ss_pred HHHHHHHHHh
Q 031673 76 MMMGFMMWMA 85 (155)
Q Consensus 76 pMn~FMmyMs 85 (155)
|+|+||+|+.
T Consensus 6 P~nAy~lF~~ 15 (80)
T d1gt0d_ 6 PMNAFMVWSR 15 (80)
T ss_dssp CCCHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 7888988875
No 3
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.53 E-value=7.6 Score=24.51 Aligned_cols=10 Identities=30% Similarity=0.693 Sum_probs=7.9
Q ss_pred HHHHHHHHHh
Q 031673 76 MMMGFMMWMA 85 (155)
Q Consensus 76 pMn~FMmyMs 85 (155)
|||+||+|+.
T Consensus 6 P~naf~lF~~ 15 (86)
T d2lefa_ 6 PLNAFMLYMK 15 (86)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7888988864
No 4
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.00 E-value=11 Score=23.63 Aligned_cols=10 Identities=30% Similarity=0.783 Sum_probs=7.8
Q ss_pred HHHHHHHHHh
Q 031673 76 MMMGFMMWMA 85 (155)
Q Consensus 76 pMn~FMmyMs 85 (155)
|||+||+|+.
T Consensus 8 P~nay~lF~~ 17 (85)
T d1j46a_ 8 PMNAFIVWSR 17 (85)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 6788888875
No 5
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]}
Probab=14.08 E-value=14 Score=22.24 Aligned_cols=10 Identities=20% Similarity=0.946 Sum_probs=8.2
Q ss_pred HHHHHHHHHh
Q 031673 76 MMMGFMMWMA 85 (155)
Q Consensus 76 pMn~FMmyMs 85 (155)
|+|.||+|+.
T Consensus 7 P~say~lf~~ 16 (73)
T d1qrva_ 7 PLSAYMLWLN 16 (73)
T ss_dssp CCCHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 7888998875
No 6
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.94 E-value=18 Score=21.44 Aligned_cols=10 Identities=10% Similarity=0.431 Sum_probs=7.7
Q ss_pred HHHHHHHHHh
Q 031673 76 MMMGFMMWMA 85 (155)
Q Consensus 76 pMn~FMmyMs 85 (155)
|+|.||+|+.
T Consensus 5 P~say~~f~~ 14 (71)
T d1ckta_ 5 KMSSYAFFVQ 14 (71)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 6788888874
No 7
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.92 E-value=24 Score=21.87 Aligned_cols=11 Identities=0% Similarity=0.166 Sum_probs=9.1
Q ss_pred HHHHHHHHHhC
Q 031673 76 MMMGFMMWMAG 86 (155)
Q Consensus 76 pMn~FMmyMsG 86 (155)
|+|.||+|+.=
T Consensus 24 P~say~lF~~e 34 (90)
T d1wgfa_ 24 PVSAMFIFSEE 34 (90)
T ss_dssp CCCHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 78899999864
No 8
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.84 E-value=25 Score=21.83 Aligned_cols=11 Identities=0% Similarity=0.211 Sum_probs=8.5
Q ss_pred HHHHHHHHHhC
Q 031673 76 MMMGFMMWMAG 86 (155)
Q Consensus 76 pMn~FMmyMsG 86 (155)
|+|.||+|+.-
T Consensus 14 P~say~lf~~~ 24 (91)
T d1k99a_ 14 PLTPYFRFFME 24 (91)
T ss_dssp SCCHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 67888888854
No 9
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.89 E-value=29 Score=22.30 Aligned_cols=10 Identities=10% Similarity=0.185 Sum_probs=8.6
Q ss_pred HHHHHHHHHh
Q 031673 76 MMMGFMMWMA 85 (155)
Q Consensus 76 pMn~FMmyMs 85 (155)
|||.||+|+.
T Consensus 21 P~~ay~lF~~ 30 (108)
T d1v64a_ 21 PPNSYSLYCA 30 (108)
T ss_dssp CSSHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 8999999974
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=8.83 E-value=1e+02 Score=17.79 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=17.3
Q ss_pred cchHHHHHHHHHHHHHHHHhhhccc
Q 031673 89 VHLFSIGITFSALWQPISALQGVGK 113 (155)
Q Consensus 89 iqIFsImmv~m~~~~Pikai~~~~~ 113 (155)
+.++++..+..+--+=|.+++++|-
T Consensus 6 mk~lT~it~iflP~t~i~gifGMN~ 30 (64)
T d2iuba2 6 MKVLTIIATIFMPLTFIAGIYGMNF 30 (64)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCC
Confidence 4567777777787888889999984
Done!