BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031674
(155 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 2 NDTLSATQIYHFLRKWLIVHSDFLANPLYIAGDSYSGKIVPIVVQEISDGIDAGHKPRMN 61
D +A Y FL KW + YIAG+SY+G VP E+S + P +N
Sbjct: 120 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVP----ELSQLVHRSKNPVIN 175
Query: 62 LKGYMLGNPVTDDKIDQNSKIQFAYLNALITYEIYKSAKKNCKGD 106
LKG+M+GN + DD D +F + + +++ + Y+ K+ C D
Sbjct: 176 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHD 220
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 2 NDTLSATQIYHFLRKWLIVHSDFLANPLYIAGDSYSGKIVPIVVQEISDGIDAGHKPRMN 61
D +A Y FL KW + YIAG+SY+G VP E+S + P +N
Sbjct: 121 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVP----ELSQLVHRSKNPVIN 176
Query: 62 LKGYMLGNPVTDDKIDQNSKIQFAYLNALITYEIYKSAKKNCKGD 106
LKG+M+GN + DD D +F + + +++ + Y+ K+ C D
Sbjct: 177 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHD 221
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 2 NDTLSATQIYHFLRKWLIVHSDFLANPLYIAGDSYSGKIVPIVVQEISDGIDAGHKPRMN 61
D +A Y FL KW + YIAG+SY+G VP E+S + P +N
Sbjct: 125 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVP----ELSQLVHRSKNPVIN 180
Query: 62 LKGYMLGNPVTDDKIDQNSKIQFAYLNALITYEIYKSAKKNCKGD 106
LKG+M+GN + DD D +F + + +++ + Y+ K+ C D
Sbjct: 181 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHD 225
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 2 NDTLSATQIYHFLRKWLIVHSDFLANPLYIAGDSYSGKIVPIVVQEISDGIDAGHKPRMN 61
D +A Y FL KW + YIAG+SY+G VP E+S + P +N
Sbjct: 125 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVP----ELSQLVHRSKNPVIN 180
Query: 62 LKGYMLGNPVTDDKIDQNSKIQFAYLNALITYEIYKSAKKNCKGD 106
LKG+M+GN + DD D +F + + +++ + Y+ K+ C D
Sbjct: 181 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHD 225
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 2 NDTLSATQIYHFLRKWLIVHSDFLANPLYIAGDSYSGKIVPIVVQEISDGIDAGHKPRMN 61
NDT A + L+ + + ++ N L++ G+SY+G +P + + P MN
Sbjct: 117 NDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLA------VLVMQDPSMN 170
Query: 62 LKGYMLGNPVTDDKIDQNSKIQFAYLNALITYEIYKSAKKNCKGDYVNVDPGNYLCKADL 121
L+G +GN ++ + + NS + FAY + L+ ++ S + +C + + N+ DL
Sbjct: 171 LQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHC----CSQNKCNFYDNKDL 226
Query: 122 QNISAVRKGVTII 134
+ ++ +++ I+
Sbjct: 227 ECVTNLQEVARIV 239
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 2 NDTLSATQIYHFLRKWLIVHSDFLANPLYIAGDSYSGKIVPIVVQEISDGIDAGHKPRMN 61
NDT A + L+ + + ++ N L++ G+SY+G +P + + P MN
Sbjct: 119 NDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLA------VLVMQDPSMN 172
Query: 62 LKGYMLGNPVTDDKIDQNSKIQFAYLNALITYEIYKSAKKNCKGDYVNVDPGNYLCKADL 121
L+G +GN ++ + + NS + FAY + L+ ++ S + +C + + N+ DL
Sbjct: 173 LQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHC----CSQNKCNFYDNKDL 228
Query: 122 QNISAVRKGVTII 134
+ ++ +++ I+
Sbjct: 229 ECVTNLQEVARIV 241
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 1 MNDTLSATQIYHFLRKWLIVHSDFLANPLYIAGDSYSGKIVPIVVQEISDGIDAGHKPRM 60
M D A Y FL KW + YIAG+S G +P + Q + + + P +
Sbjct: 124 MGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYR--NRNNSPFI 179
Query: 61 NLKGYMLGNPVTDDKIDQNSKIQFAYLNALITYEIYKSAKKNCKG 105
N +G ++ + +T+D D + + + LI+ E S K C G
Sbjct: 180 NFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPG 224
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 2 NDTLSATQIYHFLRKWLIVHSDFL--ANPLYIAGDSYSGKIVPIVVQEISDGIDAGHKPR 59
N + +Y+FL + +++ +IAG+SY+G +P+ EI HK R
Sbjct: 111 NTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEI-----LSHKDR 165
Query: 60 -MNLKGYMLGNPVTD 73
NL ++GN +TD
Sbjct: 166 NFNLTSVLIGNGLTD 180
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 2 NDTLSATQIYHFLRKWLIVHSDFL--ANPLYIAGDSYSGKIVPIVVQEISDGIDAGHKPR 59
N + +Y+FL + +++ +IAG SY+G +P+ EI HK R
Sbjct: 111 NTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEI-----LSHKDR 165
Query: 60 -MNLKGYMLGNPVTD 73
NL ++GN +TD
Sbjct: 166 NFNLTSVLIGNGLTD 180
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 9/121 (7%)
Query: 13 FLRKWLIVHSDFLANPLYIAGDSYSGKIVPIVVQEI--SDGIDAGHKPRMNLKGYMLGNP 70
FL + + + L + ++G+SY+G+ +P I + +LK ++GN
Sbjct: 154 FLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALLIGNG 213
Query: 71 VTDDKIDQNSKIQFAYLNALI-----TYEIYKSAKKNCKG--DYVNVDPGNYLCKADLQN 123
D S + FA LI ++ +A +NC+ + + D + + +N
Sbjct: 214 WIDPNTQSLSYLPFAMEKKLIDESNPNFKHLTNAHENCQNLINSASTDEAAHFSYQECEN 273
Query: 124 I 124
I
Sbjct: 274 I 274
>pdb|1D1N|A Chain A, Solution Structure Of The Fmet-Trnafmet Binding Domain Of
Becillus Stearothermophillus Translation Initiation
Factor If2
Length = 99
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 64 GYMLGNPVTDDKIDQNSKIQFAYLNALITYEIYKSAKKNCKGDYVNVDPGNYLCKADLQN 123
G + G VTD KI ++SK++ ++ YE + K K D V G Y C ++N
Sbjct: 21 GTIAGCYVTDGKITRDSKVRLI-RQGIVVYEGEIDSLKRYKDDVREVAQG-YECGLTIKN 78
Query: 124 ISAVRKGVTIILFI 137
+ +++G I ++
Sbjct: 79 FNDIKEGDVIEAYV 92
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 28/44 (63%)
Query: 73 DDKIDQNSKIQFAYLNALITYEIYKSAKKNCKGDYVNVDPGNYL 116
+ ++ + +K+ FAY+N +++++SA + K + + V+P + L
Sbjct: 290 ESQVQRFNKLGFAYVNVGDMFQLWESADEATKKELLKVEPFDEL 333
>pdb|3SE3|C Chain C, Human Ifna2-Ifnar Ternary Complex
pdb|3SE4|C Chain C, Human Ifnw-Ifnar Ternary Complex
Length = 199
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 43 IVVQEISDGIDAGHKPRMNLKGYMLGN 69
+V++E S+GI HKP +KG M GN
Sbjct: 135 LVIEEQSEGIVKKHKPE--IKGNMSGN 159
>pdb|3S9D|B Chain B, Binary Complex Between Ifna2 And Ifnar2
pdb|3S9D|D Chain D, Binary Complex Between Ifna2 And Ifnar2
Length = 199
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 43 IVVQEISDGIDAGHKPRMNLKGYMLGN 69
+V++E S+GI HKP +KG M GN
Sbjct: 135 LVIEEQSEGIVKKHKPE--IKGNMSGN 159
>pdb|1N6U|A Chain A, Nmr Structure Of The Interferon-Binding Ectodomain Of The
Human Interferon Receptor
pdb|1N6V|A Chain A, Average Structure Of The Interferon-Binding Ectodomain Of
The Human Type I Interferon Receptor
pdb|2HYM|A Chain A, Nmr Based Docking Model Of The Complex Between The Human
Type I Interferon Receptor And Human Interferon Alpha-2
pdb|2KZ1|B Chain B, Inter-Molecular Interactions In A 44 Kda
Interferon-Receptor Complex Detected By Asymmetric
Back-Protonation And 2d Noesy
pdb|2LAG|B Chain B, Structure Of The 44 Kda Complex Of Interferon-Alpha2 With
The Extracellular Part Of Ifnar2 Obtained By 2d-Double
Difference Noesy
Length = 212
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 43 IVVQEISDGIDAGHKPRMNLKGYMLGN 69
+V++E S+GI HKP +KG M GN
Sbjct: 141 LVIEEQSEGIVKKHKPE--IKGNMSGN 165
>pdb|2WRH|H Chain H, Structure Of H1 Duck Albert Hemagglutinin With Human
Receptor
pdb|2WRH|J Chain J, Structure Of H1 Duck Albert Hemagglutinin With Human
Receptor
pdb|2WRH|L Chain L, Structure Of H1 Duck Albert Hemagglutinin With Human
Receptor
Length = 324
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 34 DSYSGKIVPIVVQEISDGIDAGHKPRMNLKGYMLGNPVTDDKIDQNS 80
DS++GK+ + + + G + N+ G++LGNP D + NS
Sbjct: 35 DSHNGKLCSLGIAPLQLG-------KCNVAGWLLGNPECDLLLTANS 74
>pdb|3T9G|A Chain A, The Crystal Structure Of Family 3 Pectate Lyase From
Caldicellulosiruptor Bescii
pdb|3T9G|B Chain B, The Crystal Structure Of Family 3 Pectate Lyase From
Caldicellulosiruptor Bescii
Length = 196
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 32 AGDSYSGKIVPIVVQEISDGIDA-GHKP------RMNLKGYMLGNPVTD 73
+G +Y GK + I+ Q + DG + KP NLK ++G P D
Sbjct: 19 SGQTYDGKGIKIIAQGMGDGSQSENQKPIFKLEKGANLKNVIIGAPGCD 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,756,566
Number of Sequences: 62578
Number of extensions: 188332
Number of successful extensions: 501
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 485
Number of HSP's gapped (non-prelim): 17
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)