Query 031678
Match_columns 155
No_of_seqs 120 out of 1133
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:52:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 100.0 7E-33 1.5E-37 203.1 10.9 126 12-139 79-205 (205)
2 PRK11570 peptidyl-prolyl cis-t 100.0 3.1E-29 6.6E-34 187.7 14.2 122 15-138 83-205 (206)
3 KOG0544 FKBP-type peptidyl-pro 100.0 5.8E-29 1.3E-33 160.6 11.8 105 35-139 2-108 (108)
4 PRK10902 FKBP-type peptidyl-pr 100.0 2.1E-27 4.6E-32 183.8 15.1 127 16-144 128-254 (269)
5 KOG0549 FKBP-type peptidyl-pro 99.9 8.2E-27 1.8E-31 167.9 14.0 120 30-149 64-186 (188)
6 TIGR03516 ppisom_GldI peptidyl 99.9 1.7E-26 3.7E-31 169.2 14.6 113 27-140 62-177 (177)
7 KOG0552 FKBP-type peptidyl-pro 99.9 1.1E-24 2.3E-29 163.3 13.7 110 29-139 115-226 (226)
8 PF00254 FKBP_C: FKBP-type pep 99.9 1.4E-21 3E-26 129.2 11.1 89 48-136 4-94 (94)
9 PRK15095 FKBP-type peptidyl-pr 99.8 2.3E-18 4.9E-23 124.0 10.2 72 48-119 4-75 (156)
10 KOG0543 FKBP-type peptidyl-pro 99.8 3.5E-17 7.5E-22 131.0 15.6 114 33-150 83-202 (397)
11 COG1047 SlpA FKBP-type peptidy 99.7 1.6E-16 3.5E-21 114.9 11.1 96 48-143 2-145 (174)
12 PRK10737 FKBP-type peptidyl-pr 99.7 2.9E-16 6.4E-21 116.3 10.3 95 48-143 2-144 (196)
13 TIGR00115 tig trigger factor. 99.3 9.1E-12 2E-16 102.2 9.0 98 48-152 146-245 (408)
14 PRK01490 tig trigger factor; P 99.2 5.5E-11 1.2E-15 98.3 9.5 98 48-152 157-256 (435)
15 COG0544 Tig FKBP-type peptidyl 99.2 3.9E-11 8.4E-16 99.1 7.6 97 49-152 158-256 (441)
16 KOG0543 FKBP-type peptidyl-pro 99.1 2.8E-10 6E-15 91.6 6.6 81 42-136 1-82 (397)
17 KOG0545 Aryl-hydrocarbon recep 98.4 1.4E-07 2.9E-12 72.3 1.9 83 31-113 7-93 (329)
18 KOG0549 FKBP-type peptidyl-pro 97.4 0.00015 3.3E-09 53.0 3.2 56 81-139 1-56 (188)
19 PRK05753 nucleoside diphosphat 83.3 11 0.00024 26.4 7.5 44 87-146 90-133 (137)
20 PRK00226 greA transcription el 81.9 4.4 9.5E-05 28.9 5.2 25 87-111 121-145 (157)
21 PRK05892 nucleoside diphosphat 77.5 12 0.00026 26.9 6.3 24 88-111 121-144 (158)
22 TIGR01461 greB transcription e 77.4 13 0.00028 26.6 6.5 24 88-111 119-142 (156)
23 TIGR01462 greA transcription e 76.9 16 0.00036 25.8 6.8 26 87-112 116-141 (151)
24 PF01272 GreA_GreB: Transcript 73.4 12 0.00027 23.1 4.9 23 89-111 43-65 (77)
25 PRK01885 greB transcription el 59.1 47 0.001 23.8 6.1 24 89-112 122-145 (157)
26 COG0782 Uncharacterized conser 51.8 85 0.0018 22.3 7.5 24 87-110 114-137 (151)
27 CHL00084 rpl19 ribosomal prote 48.3 29 0.00063 23.8 3.4 77 47-143 21-97 (117)
28 PF05688 DUF824: Salmonella re 43.4 57 0.0012 18.5 3.6 35 47-86 7-41 (47)
29 PRK11536 6-N-hydroxylaminopuri 41.5 23 0.00051 27.0 2.3 27 31-60 139-165 (223)
30 COG0335 RplS Ribosomal protein 39.9 62 0.0014 22.0 3.9 74 48-141 20-93 (115)
31 COG2258 Uncharacterized protei 39.5 24 0.00051 26.7 2.0 29 31-62 136-164 (210)
32 PHA02122 hypothetical protein 39.0 60 0.0013 19.2 3.2 19 51-70 40-58 (65)
33 PRK05338 rplS 50S ribosomal pr 34.3 77 0.0017 21.6 3.7 77 47-143 17-93 (116)
34 PF09122 DUF1930: Domain of un 31.9 77 0.0017 19.2 3.0 23 90-112 35-57 (68)
35 COG0024 Map Methionine aminope 30.5 1.7E+02 0.0037 22.8 5.5 51 47-104 85-145 (255)
36 PF07076 DUF1344: Protein of u 30.2 1.3E+02 0.0028 18.1 3.9 41 27-69 16-56 (61)
37 PRK14720 transcript cleavage f 29.4 2.4E+02 0.0052 26.3 7.0 25 87-111 866-890 (906)
38 PF11874 DUF3394: Domain of un 29.0 2E+02 0.0044 21.3 5.4 58 48-111 71-130 (183)
39 PF00970 FAD_binding_6: Oxidor 28.1 1.6E+02 0.0034 18.4 8.1 59 48-111 29-94 (99)
40 PRK12426 elongation factor P; 26.4 2.1E+02 0.0046 21.2 5.2 54 56-109 36-115 (185)
41 TIGR00501 met_pdase_II methion 25.9 1.9E+02 0.0042 22.7 5.3 51 46-103 72-128 (295)
42 PF02149 KA1: Kinase associate 25.1 98 0.0021 17.4 2.6 15 126-140 2-16 (47)
43 PRK06342 transcription elongat 24.6 1.9E+02 0.0041 20.8 4.6 20 88-107 130-149 (160)
44 PRK08051 fre FMN reductase; Va 24.5 3E+02 0.0065 20.4 7.4 76 33-113 14-94 (232)
45 COG0425 SirA Predicted redox p 24.4 1.1E+02 0.0023 19.2 2.9 24 91-114 21-44 (78)
46 cd01088 MetAP2 Methionine Amin 23.8 2.1E+02 0.0046 22.4 5.1 52 46-104 68-125 (291)
47 TIGR01024 rplS_bact ribosomal 23.7 96 0.0021 21.1 2.7 76 48-143 18-93 (113)
48 PRK08671 methionine aminopepti 23.1 2.3E+02 0.0049 22.2 5.2 51 46-103 69-125 (291)
49 COG4922 Uncharacterized protei 21.8 2E+02 0.0044 19.7 4.0 19 49-67 71-90 (129)
50 PF00639 Rotamase: PPIC-type P 21.8 1.2E+02 0.0027 19.1 3.0 26 83-108 57-82 (95)
51 TIGR02925 cis_trans_EpsD pepti 21.4 89 0.0019 23.3 2.5 22 84-105 188-209 (232)
52 PTZ00053 methionine aminopepti 21.3 1.6E+02 0.0035 25.1 4.2 51 47-104 232-288 (470)
53 cd03420 SirA_RHOD_Pry_redox Si 20.5 1.4E+02 0.0029 17.9 2.8 23 92-114 16-38 (69)
54 PF03423 CBM_25: Carbohydrate 20.4 1.6E+02 0.0035 18.7 3.2 52 52-110 1-55 (87)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-33 Score=203.06 Aligned_cols=126 Identities=35% Similarity=0.615 Sum_probs=116.3
Q ss_pred CcccccccccccccCCCeeeCCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCCCcchH
Q 031678 12 PNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPG 91 (155)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~Gv~y~v~~~G~G~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~g 91 (155)
+.-..+.|++.+.+.+.++++++|+.|++++.|+|..++.++.|.+||++++.||++|+||++++.|+.|.+| .+|+|
T Consensus 79 ~~~~~~~f~~~~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~G 156 (205)
T COG0545 79 NAAEGKAFLEKNAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPG 156 (205)
T ss_pred hHHhHHHHHhhhcccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--Ceeeh
Confidence 3344566888888899999999999999999999999999999999999999999999999999999999996 99999
Q ss_pred HHHHHcCCCCccEEEEEeCCCCCCCCCC-CCCCCCCCeEEEEEEEEeee
Q 031678 92 FEEGIRDMRPGGKRRIIIPPELGPPVGP-STFFSAKQFEVFDVELLSVQ 139 (155)
Q Consensus 92 l~~~l~~m~~Ge~~~v~ip~~~~yg~~~-~~~ip~~~~l~~~v~vl~v~ 139 (155)
|.++|.+|++|++|+++||+++|||... +..|||+++|+|+|+|++|.
T Consensus 157 w~egl~~M~vG~k~~l~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 157 WDEGLQGMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred HHHHHhhCCCCceEEEEeCchhccCcCCCCCCCCCCCeEEEEEEEEecC
Confidence 9999999999999999999999999555 55599999999999999974
No 2
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.96 E-value=3.1e-29 Score=187.66 Aligned_cols=122 Identities=30% Similarity=0.450 Sum_probs=114.1
Q ss_pred cccccccccccCCCeeeCCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCCCcchHHHH
Q 031678 15 IREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEE 94 (155)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~Gv~y~v~~~G~G~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~gl~~ 94 (155)
..+.|++.+.+.++++++++|++|+++++|+|..+..+|.|.+||++++.||++|+||+..+.|+.|.++ .+++||++
T Consensus 83 ~~~~fl~~~~k~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~e 160 (206)
T PRK11570 83 EGVKFLEENAKKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIE 160 (206)
T ss_pred HHHHHHHHhhhcCCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999988899999994 68999999
Q ss_pred HHcCCCCccEEEEEeCCCCCCCC-CCCCCCCCCCeEEEEEEEEee
Q 031678 95 GIRDMRPGGKRRIIIPPELGPPV-GPSTFFSAKQFEVFDVELLSV 138 (155)
Q Consensus 95 ~l~~m~~Ge~~~v~ip~~~~yg~-~~~~~ip~~~~l~~~v~vl~v 138 (155)
+|.+|++|++++|+||++++||. +..+.|||+++|+|+|+|++|
T Consensus 161 aL~~M~~G~k~~~~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 161 ALTLMPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELLEI 205 (206)
T ss_pred HHcCCCCCCEEEEEECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence 99999999999999999999994 445679999999999999997
No 3
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.8e-29 Score=160.61 Aligned_cols=105 Identities=32% Similarity=0.592 Sum_probs=99.4
Q ss_pred CeEEEEEEcCCC-CCCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCCCcchHHHHHHcCCCCccEEEEEeCCCC
Q 031678 35 GLIYRDFEVGKG-DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPEL 113 (155)
Q Consensus 35 Gv~y~v~~~G~G-~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~ip~~~ 113 (155)
|+..+++.+|+| ..++.||.|++||++.+.||+.|+||.+++.|+.|.+|.++++.||++++..|.+|+++++.|+|++
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~ 81 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY 81 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence 789999999999 4699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCCCCCCCCCeEEEEEEEEeee
Q 031678 114 GPP-VGPSTFFSAKQFEVFDVELLSVQ 139 (155)
Q Consensus 114 ~yg-~~~~~~ip~~~~l~~~v~vl~v~ 139 (155)
+|| .+.+..||||++|+|+|||++++
T Consensus 82 aYG~~G~p~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 82 AYGPRGHPGGIPPNATLVFDVELLKVN 108 (108)
T ss_pred ccCCCCCCCccCCCcEEEEEEEEEecC
Confidence 999 55566799999999999999874
No 4
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.95 E-value=2.1e-27 Score=183.76 Aligned_cols=127 Identities=31% Similarity=0.630 Sum_probs=117.5
Q ss_pred ccccccccccCCCeeeCCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCCCcchHHHHH
Q 031678 16 REGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEG 95 (155)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~Gv~y~v~~~G~G~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~gl~~~ 95 (155)
.+.|++.+...++++++++|++|+++++|+|..++.||.|.|||++++.||++|++++..+.|+.|.+ +.+++||+++
T Consensus 128 ~~~fl~~~~k~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--~~vipG~~Ea 205 (269)
T PRK10902 128 GKKYREKFAKEKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEG 205 (269)
T ss_pred HHHHHHHhccCCCcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEec--CCcchHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999998888999888 5799999999
Q ss_pred HcCCCCccEEEEEeCCCCCCCCCCCCCCCCCCeEEEEEEEEeeecCCcC
Q 031678 96 IRDMRPGGKRRIIIPPELGPPVGPSTFFSAKQFEVFDVELLSVQDCQRR 144 (155)
Q Consensus 96 l~~m~~Ge~~~v~ip~~~~yg~~~~~~ip~~~~l~~~v~vl~v~~~~~~ 144 (155)
|.+|++|+++.|+||++++||......|||+++|+|+|+|+++...+..
T Consensus 206 L~~Mk~Gek~~l~IP~~laYG~~g~~gIppns~LvfeVeLl~V~~~~~~ 254 (269)
T PRK10902 206 LKNIKKGGKIKLVIPPELAYGKAGVPGIPANSTLVFDVELLDVKPAPKA 254 (269)
T ss_pred HhcCCCCcEEEEEECchhhCCCCCCCCCCCCCcEEEEEEEEEeccCccc
Confidence 9999999999999999999996555679999999999999999875443
No 5
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.2e-27 Score=167.95 Aligned_cols=120 Identities=28% Similarity=0.510 Sum_probs=107.7
Q ss_pred eeCCCCeEEEEEEcCC--CCCCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCCCcchHHHHHHcCCCCccEEEE
Q 031678 30 TKRDSGLIYRDFEVGK--GDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRI 107 (155)
Q Consensus 30 ~~~~~Gv~y~v~~~G~--G~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v 107 (155)
..+.+++...++..-. ..+++.||++.+||++++.||++|+|||.++.|++|.+|.+++++||+.+|.+|++||++++
T Consensus 64 ~~~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl 143 (188)
T KOG0549|consen 64 WNPDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKL 143 (188)
T ss_pred cCCCCceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEE
Confidence 4467888888887743 23588999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCC-CCCCCCCCCCCeEEEEEEEEeeecCCcCcccee
Q 031678 108 IIPPELGPP-VGPSTFFSAKQFEVFDVELLSVQDCQRRTIGFY 149 (155)
Q Consensus 108 ~ip~~~~yg-~~~~~~ip~~~~l~~~v~vl~v~~~~~~~~~~~ 149 (155)
.|||+++|| .+.++.||+++.|+|+||++++.+.++..+.|.
T Consensus 144 ~IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i~~~~~~~~~f~ 186 (188)
T KOG0549|consen 144 IIPPHLGYGERGAPPKIPGDAVLIFDIELVKIERGPPEAKLFE 186 (188)
T ss_pred ecCccccCccCCCCCCCCCCeeEEEEEEEEEeecCCCcccccc
Confidence 999999999 565667999999999999999999988777664
No 6
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.95 E-value=1.7e-26 Score=169.19 Aligned_cols=113 Identities=21% Similarity=0.325 Sum_probs=103.0
Q ss_pred CCeeeCCCCeEEEEEEc--CCCCCCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCCCcchHHHHHHcCCCCccE
Q 031678 27 ENYTKRDSGLIYRDFEV--GKGDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGK 104 (155)
Q Consensus 27 ~~~~~~~~Gv~y~v~~~--G~G~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~gl~~~l~~m~~Ge~ 104 (155)
..+.++++|++|.++.. |+|..++.||.|.+||++++.||++|++++. ..|..|.+|.+++++||+++|.+|++||+
T Consensus 62 ~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~dG~v~~ss~~-~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~ 140 (177)
T TIGR03516 62 VKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALDGDVIYSEEE-LGPQTYKVDQQDLFSGLRDGLKLMKEGET 140 (177)
T ss_pred CCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCCCCEEEeCCC-CCCEEEEeCCcchhHHHHHHHcCCCCCCE
Confidence 56689999999999976 6667889999999999999999999999986 46999999999999999999999999999
Q ss_pred EEEEeCCCCCCC-CCCCCCCCCCCeEEEEEEEEeeec
Q 031678 105 RRIIIPPELGPP-VGPSTFFSAKQFEVFDVELLSVQD 140 (155)
Q Consensus 105 ~~v~ip~~~~yg-~~~~~~ip~~~~l~~~v~vl~v~~ 140 (155)
++|++|+++||| .+....|||+++|+|+|+|+++.+
T Consensus 141 ~~~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~~ 177 (177)
T TIGR03516 141 ATFLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIKP 177 (177)
T ss_pred EEEEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEecC
Confidence 999999999999 455567999999999999999863
No 7
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.1e-24 Score=163.26 Aligned_cols=110 Identities=40% Similarity=0.705 Sum_probs=104.1
Q ss_pred eeeCCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEeC-CCCEEeccccCCccEE-EEeCCCCcchHHHHHHcCCCCccEEE
Q 031678 29 YTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNE-SGRRIDSTYLQGSPAR-IRMGTNALVPGFEEGIRDMRPGGKRR 106 (155)
Q Consensus 29 ~~~~~~Gv~y~v~~~G~G~~~~~gd~V~v~y~~~~~-dg~~~~st~~~~~p~~-~~~g~~~~~~gl~~~l~~m~~Ge~~~ 106 (155)
..+++.||.|+-++.|+|+.+..|+.|.+||.+++. +|++|++++. +.|+. |.+|.+.+++||+.++.+|++|+.++
T Consensus 115 ~~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~-~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr 193 (226)
T KOG0552|consen 115 SRTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFG-GKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR 193 (226)
T ss_pred ceecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccC-CCCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence 367899999999999999999999999999999998 9999999986 67888 99999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 031678 107 IIIPPELGPPVGPSTFFSAKQFEVFDVELLSVQ 139 (155)
Q Consensus 107 v~ip~~~~yg~~~~~~ip~~~~l~~~v~vl~v~ 139 (155)
|+|||+++||....+.|||+++|+|+|+|++|.
T Consensus 194 viIPp~lgYg~~g~~~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 194 VIIPPELGYGKKGVPEIPPNSTLVFDVELLSVK 226 (226)
T ss_pred EEeCccccccccCcCcCCCCCcEEEEEEEEecC
Confidence 999999999988888999999999999999873
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.87 E-value=1.4e-21 Score=129.22 Aligned_cols=89 Identities=37% Similarity=0.697 Sum_probs=82.9
Q ss_pred CCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCCCcchHHHHHHcCCCCccEEEEEeCCCCCCCCCC--CCCCCC
Q 031678 48 CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGP--STFFSA 125 (155)
Q Consensus 48 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~ip~~~~yg~~~--~~~ip~ 125 (155)
+++.||.|.+||++++.+|++|++++..+.|+.|.+|.+.+++||+++|.+|++|++++|.+|++++||... ...||+
T Consensus 4 ~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ip~ 83 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPKIPP 83 (94)
T ss_dssp SBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTTBTT
T ss_pred cCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCCcCC
Confidence 589999999999999999999999988888999999999999999999999999999999999999999444 345999
Q ss_pred CCeEEEEEEEE
Q 031678 126 KQFEVFDVELL 136 (155)
Q Consensus 126 ~~~l~~~v~vl 136 (155)
+++|+|+|+|+
T Consensus 84 ~~~l~f~Iell 94 (94)
T PF00254_consen 84 NSTLVFEIELL 94 (94)
T ss_dssp TSEEEEEEEEE
T ss_pred CCeEEEEEEEC
Confidence 99999999996
No 9
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.78 E-value=2.3e-18 Score=123.99 Aligned_cols=72 Identities=25% Similarity=0.427 Sum_probs=67.6
Q ss_pred CCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCCCcchHHHHHHcCCCCccEEEEEeCCCCCCCCCC
Q 031678 48 CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGP 119 (155)
Q Consensus 48 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~ip~~~~yg~~~ 119 (155)
.++.|+.|.+||++++.||++|++|+..+.|+.|.+|.+++++||+++|.+|++|+++.|.|||+++||..+
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 578999999999999999999999987778999999999999999999999999999999999999998554
No 10
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.5e-17 Score=130.97 Aligned_cols=114 Identities=25% Similarity=0.349 Sum_probs=100.0
Q ss_pred CCCeEEEEEEcCCC--CCCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCC-CCcchHHHHHHcCCCCccEEEEEe
Q 031678 33 DSGLIYRDFEVGKG--DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGT-NALVPGFEEGIRDMRPGGKRRIII 109 (155)
Q Consensus 33 ~~Gv~y~v~~~G~G--~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~-~~~~~gl~~~l~~m~~Ge~~~v~i 109 (155)
+.+|..+|+++|.| ..|..|..|.+||.+.+.++ +|++. ...+.|..|. ..++.||+.+|.+|++|+.+.|+|
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~---~~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i 158 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQR---ELRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTI 158 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecc---ccceEEecCCccchhHHHHHHHHhcCccceEEEEe
Confidence 89999999999999 57999999999999999666 77766 3458888888 479999999999999999999999
Q ss_pred CCCCCCC--CCCCCCCCCCCeEEEEEEEEeee-cCCcCccceee
Q 031678 110 PPELGPP--VGPSTFFSAKQFEVFDVELLSVQ-DCQRRTIGFYS 150 (155)
Q Consensus 110 p~~~~yg--~~~~~~ip~~~~l~~~v~vl~v~-~~~~~~~~~~~ 150 (155)
+|.++|| .+.++.|||+++|.|+|+|+++. +.+.++.++..
T Consensus 159 ~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~ 202 (397)
T KOG0543|consen 159 DPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAE 202 (397)
T ss_pred CcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchH
Confidence 9999999 33467799999999999999999 77777777654
No 11
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.6e-16 Score=114.87 Aligned_cols=96 Identities=26% Similarity=0.364 Sum_probs=85.2
Q ss_pred CCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCCCcchHHHHHHcCCCCccEEEEEeCCCCCCCCCCCCCC---C
Q 031678 48 CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFF---S 124 (155)
Q Consensus 48 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~ip~~~~yg~~~~~~i---p 124 (155)
.++.|+.|.+||++++.||+++++|.....|+.|.+|.+++++||++||.+|.+|++.++.|||+.|||..++.+| |
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~~lvq~vp 81 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDPDLVQRVP 81 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCChHHeEEec
Confidence 4788999999999999999999999765789999999999999999999999999999999999999986554322 1
Q ss_pred ---------------------------------------------CCCeEEEEEEEEeeecCCc
Q 031678 125 ---------------------------------------------AKQFEVFDVELLSVQDCQR 143 (155)
Q Consensus 125 ---------------------------------------------~~~~l~~~v~vl~v~~~~~ 143 (155)
||++|.|+++|+++.....
T Consensus 82 ~~~F~~~~~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~feveVv~v~~a~~ 145 (174)
T COG1047 82 RDEFQGVGELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFEVEVVEVREATE 145 (174)
T ss_pred HHHhCcCCCCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEEEEEEEEecChH
Confidence 7889999999999987654
No 12
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.68 E-value=2.9e-16 Score=116.32 Aligned_cols=95 Identities=18% Similarity=0.243 Sum_probs=83.3
Q ss_pred CCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCCCcchHHHHHHcCCCCccEEEEEeCCCCCCCCCCCCCC---C
Q 031678 48 CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFF---S 124 (155)
Q Consensus 48 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~ip~~~~yg~~~~~~i---p 124 (155)
.++.++.|+++|++++.+|+++++|+. ..|+.|.+|.++++|+|+++|.+|++|++.+|.|||+.|||..++..| |
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~~lV~~vp 80 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENLVQRVP 80 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCChHHEEEec
Confidence 367899999999999999999999975 689999999999999999999999999999999999999985543211 1
Q ss_pred ---------------------------------------------CCCeEEEEEEEEeeecCCc
Q 031678 125 ---------------------------------------------AKQFEVFDVELLSVQDCQR 143 (155)
Q Consensus 125 ---------------------------------------------~~~~l~~~v~vl~v~~~~~ 143 (155)
|+.+|.|+|+|++++.+..
T Consensus 81 r~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev~~d~V~vD~NHPLAG~~L~F~veV~~vr~at~ 144 (196)
T PRK10737 81 KDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATE 144 (196)
T ss_pred HHHCCCccCCCCCCEEEEeCCCCcEEEEEEEEcCCEEEEECCCcCCCCEEEEEEEEEEeccCCH
Confidence 7889999999999987644
No 13
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.31 E-value=9.1e-12 Score=102.15 Aligned_cols=98 Identities=18% Similarity=0.358 Sum_probs=82.7
Q ss_pred CCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCCCcchHHHHHHcCCCCccEEEEEeCCCCCCCCCCCCCCCCCC
Q 031678 48 CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAKQ 127 (155)
Q Consensus 48 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~ip~~~~yg~~~~~~ip~~~ 127 (155)
.++.||.|.++|++.. +|..++++. ..++.|.+|.+.+++||+++|.||++|++++|.++....|+.... +|.
T Consensus 146 ~~~~gD~V~v~~~~~~-dg~~~~~~~--~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~----~gk 218 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI-DGEAFEGGK--AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL----AGK 218 (408)
T ss_pred ccCCCCEEEEEEEEEE-CCEECcCCC--CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC----CCC
Confidence 5789999999999987 899888773 568999999999999999999999999999999998888875444 799
Q ss_pred eEEEEEEEEeeecC--CcCccceeecc
Q 031678 128 FEVFDVELLSVQDC--QRRTIGFYSDV 152 (155)
Q Consensus 128 ~l~~~v~vl~v~~~--~~~~~~~~~~~ 152 (155)
++.|+|+|.+|... +.-.+.|...+
T Consensus 219 ~~~f~v~i~~I~~~~~peldDefak~~ 245 (408)
T TIGR00115 219 EATFKVTVKEVKEKELPELDDEFAKEL 245 (408)
T ss_pred eEEEEEEEEEeccCCCCCCCHHHHHhc
Confidence 99999999999876 33445555443
No 14
>PRK01490 tig trigger factor; Provisional
Probab=99.23 E-value=5.5e-11 Score=98.31 Aligned_cols=98 Identities=18% Similarity=0.347 Sum_probs=82.6
Q ss_pred CCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCCCcchHHHHHHcCCCCccEEEEEeCCCCCCCCCCCCCCCCCC
Q 031678 48 CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAKQ 127 (155)
Q Consensus 48 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~ip~~~~yg~~~~~~ip~~~ 127 (155)
.++.||.|+++|.+.. +|..++++ ...++.|.+|.+.+++||+++|.||++|+++.|.++....|+.... +|.
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~--~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l----agk 229 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGG--KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL----AGK 229 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCC--CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC----CCC
Confidence 4789999999999998 88888876 3468899999999999999999999999999999988778875444 789
Q ss_pred eEEEEEEEEeeecC--CcCccceeecc
Q 031678 128 FEVFDVELLSVQDC--QRRTIGFYSDV 152 (155)
Q Consensus 128 ~l~~~v~vl~v~~~--~~~~~~~~~~~ 152 (155)
.+.|.|+|.+|... +.-.+.|...+
T Consensus 230 ~~~f~v~v~~V~~~~~pel~Defak~~ 256 (435)
T PRK01490 230 EATFKVTVKEVKEKELPELDDEFAKKL 256 (435)
T ss_pred eEEEEEEEEEeccCCCCCCCHHHHHhc
Confidence 99999999999876 44445555443
No 15
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3.9e-11 Score=99.09 Aligned_cols=97 Identities=18% Similarity=0.345 Sum_probs=81.8
Q ss_pred CCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCCCcchHHHHHHcCCCCccEEEEEeCCCCCCCCCCCCCCCCCCe
Q 031678 49 PKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAKQF 128 (155)
Q Consensus 49 ~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~ip~~~~yg~~~~~~ip~~~~ 128 (155)
++.||.|+|+|.++. ||..|.+. ....+.+.+|.+.++|||+++|.||++|++..|.+.....|..... +|+.
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg--~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L----aGK~ 230 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGG--KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL----AGKE 230 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCc--cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh----CCCc
Confidence 899999999999977 99988887 3467899999999999999999999999999988877778876665 8999
Q ss_pred EEEEEEEEeeecC--CcCccceeecc
Q 031678 129 EVFDVELLSVQDC--QRRTIGFYSDV 152 (155)
Q Consensus 129 l~~~v~vl~v~~~--~~~~~~~~~~~ 152 (155)
..|.|+|..|..+ +.-.+.|...+
T Consensus 231 a~F~V~vkeVk~~elpEldDEfAk~~ 256 (441)
T COG0544 231 ATFKVKVKEVKKRELPELDDEFAKKL 256 (441)
T ss_pred eEEEEEEEEEeecCCCCCCHHHHHhc
Confidence 9999999999876 44445555443
No 16
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.8e-10 Score=91.62 Aligned_cols=81 Identities=30% Similarity=0.596 Sum_probs=72.2
Q ss_pred EcCCCC-CCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCCCcchHHHHHHcCCCCccEEEEEeCCCCCCCCCCC
Q 031678 42 EVGKGD-CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPS 120 (155)
Q Consensus 42 ~~G~G~-~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~ip~~~~yg~~~~ 120 (155)
++|+|. .|..||.|.+||++++.||+.|+||.+ +.|+.|.+|.+..+.+|..++..|+.|+ .+.+
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~g~-------------~~~p 66 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKKGE-------------AGSP 66 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccccc-------------cCCC
Confidence 367775 689999999999999999999999988 8899999999999999999999999721 4667
Q ss_pred CCCCCCCeEEEEEEEE
Q 031678 121 TFFSAKQFEVFDVELL 136 (155)
Q Consensus 121 ~~ip~~~~l~~~v~vl 136 (155)
+.||++++|+|+|+++
T Consensus 67 p~ip~~a~l~fe~el~ 82 (397)
T KOG0543|consen 67 PKIPSNATLLFEVELL 82 (397)
T ss_pred CCCCCCcceeeeeccc
Confidence 8899999999999974
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.4e-07 Score=72.28 Aligned_cols=83 Identities=23% Similarity=0.252 Sum_probs=73.9
Q ss_pred eCCCCeEEEEEEcCCCCC--CCCCCEEEEEEEEEeCC--CCEEeccccCCccEEEEeCCCCcchHHHHHHcCCCCccEEE
Q 031678 31 KRDSGLIYRDFEVGKGDC--PKDGQQVIFHYIGYNES--GRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRR 106 (155)
Q Consensus 31 ~~~~Gv~y~v~~~G~G~~--~~~gd~V~v~y~~~~~d--g~~~~st~~~~~p~~~~~g~~~~~~gl~~~l~~m~~Ge~~~ 106 (155)
....||..+++..|+|.- ..+|..|.|||.....+ ++++++|...+.|+.+.+|+.--++-|+..+..|++++.+.
T Consensus 7 l~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Evaq 86 (329)
T KOG0545|consen 7 LNVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQ 86 (329)
T ss_pred ccchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHH
Confidence 356899999999999975 45899999999998873 67899999999999999999999999999999999999999
Q ss_pred EEeCCCC
Q 031678 107 IIIPPEL 113 (155)
Q Consensus 107 v~ip~~~ 113 (155)
|+|....
T Consensus 87 F~~d~~~ 93 (329)
T KOG0545|consen 87 FWCDTIH 93 (329)
T ss_pred hhhhhhh
Confidence 9987544
No 18
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00015 Score=53.01 Aligned_cols=56 Identities=27% Similarity=0.547 Sum_probs=42.3
Q ss_pred EEeCCCCcchHHHHHHcCCCCccEEEEEeCCCCCCCCCCCCCCCCCCeEEEEEEEEeee
Q 031678 81 IRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAKQFEVFDVELLSVQ 139 (155)
Q Consensus 81 ~~~g~~~~~~gl~~~l~~m~~Ge~~~v~ip~~~~yg~~~~~~ip~~~~l~~~v~vl~v~ 139 (155)
+.+|.+.++++++.+|.+|+.|+++++.+||+++||.+... .-..++|.+.++.+.
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~---~~~~~~~~~~l~~~~ 56 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG---DLNILVITILLVLLF 56 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc---cccceEEEeeeeehh
Confidence 35678889999999999999999999999999999943321 223355666555443
No 19
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=83.31 E-value=11 Score=26.42 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=30.9
Q ss_pred CcchHHHHHHcCCCCccEEEEEeCCCCCCCCCCCCCCCCCCeEEEEEEEEeeecCCcCcc
Q 031678 87 ALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAKQFEVFDVELLSVQDCQRRTI 146 (155)
Q Consensus 87 ~~~~gl~~~l~~m~~Ge~~~v~ip~~~~yg~~~~~~ip~~~~l~~~v~vl~v~~~~~~~~ 146 (155)
.+...+..||.|.++||.+.+..|.. . .+.++|++|.-.++...
T Consensus 90 Si~SPlG~ALlG~~~Gd~v~v~~p~G--------------~--~~~~~I~~I~y~p~~~~ 133 (137)
T PRK05753 90 SVLAPVGAALLGLSVGQSIDWPLPGG--------------K--ETHLEVLEVEYQPEAAG 133 (137)
T ss_pred cccCHHHHHHcCCCCCCEEEEECCCC--------------C--EEEEEEEEEEeCCcccC
Confidence 34568999999999999999876642 1 14567777775444433
No 20
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=81.86 E-value=4.4 Score=28.94 Aligned_cols=25 Identities=8% Similarity=0.212 Sum_probs=21.3
Q ss_pred CcchHHHHHHcCCCCccEEEEEeCC
Q 031678 87 ALVPGFEEGIRDMRPGGKRRIIIPP 111 (155)
Q Consensus 87 ~~~~gl~~~l~~m~~Ge~~~v~ip~ 111 (155)
.....+..+|.|.++||.+.+..|.
T Consensus 121 S~~SPlG~aLlGk~~Gd~v~~~~p~ 145 (157)
T PRK00226 121 SIESPIARALIGKKVGDTVEVTTPG 145 (157)
T ss_pred ccCChHHHHHhCCCCCCEEEEEcCC
Confidence 3456899999999999999998765
No 21
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=77.50 E-value=12 Score=26.92 Aligned_cols=24 Identities=8% Similarity=0.138 Sum_probs=20.7
Q ss_pred cchHHHHHHcCCCCccEEEEEeCC
Q 031678 88 LVPGFEEGIRDMRPGGKRRIIIPP 111 (155)
Q Consensus 88 ~~~gl~~~l~~m~~Ge~~~v~ip~ 111 (155)
....|-.+|.|.++||.+.+..|.
T Consensus 121 ~~SPlG~ALlGk~vGD~v~v~~p~ 144 (158)
T PRK05892 121 ADSPLGQALAGHQAGDTVTYSTPQ 144 (158)
T ss_pred cCCHHHHHHhCCCCCCEEEEEcCC
Confidence 346799999999999999987765
No 22
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=77.37 E-value=13 Score=26.62 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=21.0
Q ss_pred cchHHHHHHcCCCCccEEEEEeCC
Q 031678 88 LVPGFEEGIRDMRPGGKRRIIIPP 111 (155)
Q Consensus 88 ~~~gl~~~l~~m~~Ge~~~v~ip~ 111 (155)
....+..+|.|.++||.+.+..|.
T Consensus 119 ~~SPlG~ALlGk~~GD~v~v~~p~ 142 (156)
T TIGR01461 119 IDSPLARALLKKEVGDEVVVNTPA 142 (156)
T ss_pred CCCHHHHHHcCCCCCCEEEEEcCC
Confidence 456899999999999999997765
No 23
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=76.92 E-value=16 Score=25.83 Aligned_cols=26 Identities=8% Similarity=0.167 Sum_probs=21.9
Q ss_pred CcchHHHHHHcCCCCccEEEEEeCCC
Q 031678 87 ALVPGFEEGIRDMRPGGKRRIIIPPE 112 (155)
Q Consensus 87 ~~~~gl~~~l~~m~~Ge~~~v~ip~~ 112 (155)
.....+..+|.|.++||.+.+..|..
T Consensus 116 S~~SPlG~ALlG~~~Gd~v~v~~p~g 141 (151)
T TIGR01462 116 SIDSPLGKALIGKKVGDVVEVQTPKG 141 (151)
T ss_pred cCCCHHHHHHcCCCCCCEEEEEeCCC
Confidence 44568999999999999999987663
No 24
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=73.43 E-value=12 Score=23.15 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=18.5
Q ss_pred chHHHHHHcCCCCccEEEEEeCC
Q 031678 89 VPGFEEGIRDMRPGGKRRIIIPP 111 (155)
Q Consensus 89 ~~gl~~~l~~m~~Ge~~~v~ip~ 111 (155)
...|-.||.+.++||.+.+.+|.
T Consensus 43 ~SPLG~ALlG~~~Gd~v~~~~~~ 65 (77)
T PF01272_consen 43 DSPLGKALLGKKVGDEVEVELPG 65 (77)
T ss_dssp TSHHHHHHTT-BTT-EEEEEETT
T ss_pred cCHHHHHhcCCCCCCEEEEEeCC
Confidence 45799999999999999998876
No 25
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=59.13 E-value=47 Score=23.76 Aligned_cols=24 Identities=8% Similarity=0.130 Sum_probs=20.9
Q ss_pred chHHHHHHcCCCCccEEEEEeCCC
Q 031678 89 VPGFEEGIRDMRPGGKRRIIIPPE 112 (155)
Q Consensus 89 ~~gl~~~l~~m~~Ge~~~v~ip~~ 112 (155)
...+..+|.|.++||.+.+.+|..
T Consensus 122 ~SPlG~ALlGk~vGd~v~v~~p~g 145 (157)
T PRK01885 122 DSPMARALLKKEVGDEVTVNTPAG 145 (157)
T ss_pred cCHHHHHHhCCCCCCEEEEEcCCC
Confidence 568999999999999999987763
No 26
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=51.76 E-value=85 Score=22.31 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=20.6
Q ss_pred CcchHHHHHHcCCCCccEEEEEeC
Q 031678 87 ALVPGFEEGIRDMRPGGKRRIIIP 110 (155)
Q Consensus 87 ~~~~gl~~~l~~m~~Ge~~~v~ip 110 (155)
.....+-.+|.|.++||++.+..|
T Consensus 114 S~~SPig~aLlGk~vGd~v~v~~p 137 (151)
T COG0782 114 SVDSPLGRALLGKKVGDTVEVNTP 137 (151)
T ss_pred eccCHHHHHHhCCCCCCEEEEecC
Confidence 345679999999999999999877
No 27
>CHL00084 rpl19 ribosomal protein L19
Probab=48.32 E-value=29 Score=23.75 Aligned_cols=77 Identities=12% Similarity=0.057 Sum_probs=44.8
Q ss_pred CCCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCCCcchHHHHHHcCCCCccEEEEEeCCCCCCCCCCCCCCCCC
Q 031678 47 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAK 126 (155)
Q Consensus 47 ~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~ip~~~~yg~~~~~~ip~~ 126 (155)
+....||+|.|+|...-.+-+.+... .|+-.+..+...++++++.-- .+|.+.+..+|-.
T Consensus 21 p~f~~GDtV~V~~~i~eg~k~R~q~F-----------------~GvvI~~r~~G~~~tftvRki---~~gvGVEr~fpl~ 80 (117)
T CHL00084 21 PKIRVGDTVKVGVLIQEGNKERVQFY-----------------EGTVIAKKNSGLNTTITVRKV---FQGIGVERVFLLH 80 (117)
T ss_pred CccCCCCEEEEEEEEecCCeeEeceE-----------------EEEEEEEeCCCCCeeEEEEEe---ccCccEEEEEecC
Confidence 35789999999997765332222211 111122233333444444332 4566666667788
Q ss_pred CeEEEEEEEEeeecCCc
Q 031678 127 QFEVFDVELLSVQDCQR 143 (155)
Q Consensus 127 ~~l~~~v~vl~v~~~~~ 143 (155)
++.+-.|+|+.-.+...
T Consensus 81 SP~I~~IeV~r~gkvRR 97 (117)
T CHL00084 81 SPKLASIEVLRRSKVRR 97 (117)
T ss_pred CCccceEEEEEeCccch
Confidence 88999999998764433
No 28
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=43.44 E-value=57 Score=18.52 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=25.8
Q ss_pred CCCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCC
Q 031678 47 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTN 86 (155)
Q Consensus 47 ~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~ 86 (155)
..++.|+.+.+..+.++.+|..+.. .++.+..|.+
T Consensus 7 akaK~Ge~I~ltVt~kda~G~pv~n-----~~f~l~r~~~ 41 (47)
T PF05688_consen 7 AKAKVGETIPLTVTVKDANGNPVPN-----APFTLTRGDA 41 (47)
T ss_pred hheecCCeEEEEEEEECCCCCCcCC-----ceEEEEecCc
Confidence 3588999999999999988876553 3566665543
No 29
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=41.47 E-value=23 Score=26.98 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=21.1
Q ss_pred eCCCCeEEEEEEcCCCCCCCCCCEEEEEEE
Q 031678 31 KRDSGLIYRDFEVGKGDCPKDGQQVIFHYI 60 (155)
Q Consensus 31 ~~~~Gv~y~v~~~G~G~~~~~gd~V~v~y~ 60 (155)
+..+|.|++|+++|. +..||.|.+.=.
T Consensus 139 ~g~~G~Y~RVL~~G~---V~~GD~v~l~~r 165 (223)
T PRK11536 139 SGKCGWLYRVIAPGK---VSADAPLELVSR 165 (223)
T ss_pred hCCcEEEEEEECCcE---EcCCCEEEEEeC
Confidence 356799999999975 888998876443
No 30
>COG0335 RplS Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]
Probab=39.91 E-value=62 Score=22.05 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=44.1
Q ss_pred CCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCCCcchHHHHHHcCCCCccEEEEEeCCCCCCCCCCCCCCCCCC
Q 031678 48 CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAKQ 127 (155)
Q Consensus 48 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~ip~~~~yg~~~~~~ip~~~ 127 (155)
...+||+|.+|+...-.+-..+... .|.-.+..+-..+++..+.=- .||.+-+..+|-.|
T Consensus 20 ~f~~GDtvrv~vki~Eg~keR~Q~F-----------------eGvVia~r~~G~~~tftvRki---s~G~GVEr~Fp~~S 79 (115)
T COG0335 20 SFRPGDTVRVHVKIVEGSKERVQAF-----------------EGVVIARRGRGISETFTVRKI---SYGVGVERVFPLHS 79 (115)
T ss_pred CCCCCCEEEEEEEEEeCCeEEEeee-----------------eEEEEEECCCCccceEEEEEe---ecCceEEEEeecCC
Confidence 4678999999987776322222211 111122233334444444332 56777777788899
Q ss_pred eEEEEEEEEeeecC
Q 031678 128 FEVFDVELLSVQDC 141 (155)
Q Consensus 128 ~l~~~v~vl~v~~~ 141 (155)
+++-.|+|+.-.+-
T Consensus 80 P~Ie~IeV~rrGkV 93 (115)
T COG0335 80 PLIESIEVVRRGKV 93 (115)
T ss_pred CceeEEEEEecCce
Confidence 99999999876554
No 31
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.55 E-value=24 Score=26.74 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=22.9
Q ss_pred eCCCCeEEEEEEcCCCCCCCCCCEEEEEEEEE
Q 031678 31 KRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGY 62 (155)
Q Consensus 31 ~~~~Gv~y~v~~~G~G~~~~~gd~V~v~y~~~ 62 (155)
+.-+|+||+|+++|. +..||.+.+-+...
T Consensus 136 ~G~~G~y~RVL~~G~---v~~gD~l~l~~r~~ 164 (210)
T COG2258 136 TGRTGWYARVLEEGK---VRAGDPLKLIPRPS 164 (210)
T ss_pred cCcccEEEEEcccce---ecCCCceEEecCCC
Confidence 345789999999975 88899988876654
No 32
>PHA02122 hypothetical protein
Probab=39.03 E-value=60 Score=19.20 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=15.8
Q ss_pred CCCEEEEEEEEEeCCCCEEe
Q 031678 51 DGQQVIFHYIGYNESGRRID 70 (155)
Q Consensus 51 ~gd~V~v~y~~~~~dg~~~~ 70 (155)
.||.|.++|++.. +|+.|-
T Consensus 40 ~gd~v~vn~e~~~-ng~l~i 58 (65)
T PHA02122 40 DGDEVIVNFELVV-NGKLII 58 (65)
T ss_pred CCCEEEEEEEEEE-CCEEEE
Confidence 6899999999988 777664
No 33
>PRK05338 rplS 50S ribosomal protein L19; Provisional
Probab=34.28 E-value=77 Score=21.65 Aligned_cols=77 Identities=16% Similarity=0.090 Sum_probs=42.3
Q ss_pred CCCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCCCcchHHHHHHcCCCCccEEEEEeCCCCCCCCCCCCCCCCC
Q 031678 47 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAK 126 (155)
Q Consensus 47 ~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~ip~~~~yg~~~~~~ip~~ 126 (155)
+....||.|.|+|.....+-+.+... .|+-.+..+-..+.++++.=- .+|.+.+..+|-.
T Consensus 17 p~f~~GD~V~V~~~i~eg~k~R~q~f-----------------~GvvI~~~~~G~~~tftvRki---~~gvGVEr~fpl~ 76 (116)
T PRK05338 17 PEFRPGDTVRVHVKVVEGNKERIQAF-----------------EGVVIARRGRGLNETFTVRKI---SYGVGVERTFPLH 76 (116)
T ss_pred CCcCCCCEEEEEEEEccCCceEeccE-----------------EEEEEEEeCCCCCceEEEEEc---ccCccEEEEecCC
Confidence 34779999999997654322222111 111111122222333333322 4456666667778
Q ss_pred CeEEEEEEEEeeecCCc
Q 031678 127 QFEVFDVELLSVQDCQR 143 (155)
Q Consensus 127 ~~l~~~v~vl~v~~~~~ 143 (155)
++.+-.|+|+.-.+...
T Consensus 77 SP~I~~IeV~r~gkvRR 93 (116)
T PRK05338 77 SPRIDSIEVVRRGKVRR 93 (116)
T ss_pred CCcccEEEEEEecccch
Confidence 88999999998754433
No 34
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=31.90 E-value=77 Score=19.24 Aligned_cols=23 Identities=9% Similarity=0.319 Sum_probs=18.1
Q ss_pred hHHHHHHcCCCCccEEEEEeCCC
Q 031678 90 PGFEEGIRDMRPGGKRRIIIPPE 112 (155)
Q Consensus 90 ~gl~~~l~~m~~Ge~~~v~ip~~ 112 (155)
+.+..|+.-|..||++.++..+.
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETTS
T ss_pred HHHHHHHHHhhcCceeEEEEecC
Confidence 46889999999999999988763
No 35
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=30.55 E-value=1.7e+02 Score=22.83 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=37.1
Q ss_pred CCCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCCC------cc----hHHHHHHcCCCCccE
Q 031678 47 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNA------LV----PGFEEGIRDMRPGGK 104 (155)
Q Consensus 47 ~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~------~~----~gl~~~l~~m~~Ge~ 104 (155)
..++.||.|.+++.... ||-.-+++ .+|.+|... ++ ..|+.++..+++|-+
T Consensus 85 ~vlk~GDiv~IDvg~~~-dG~~~Dsa------~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~ 145 (255)
T COG0024 85 KVLKEGDIVKIDVGAHI-DGYIGDTA------ITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGAR 145 (255)
T ss_pred cccCCCCEEEEEEEEEE-CCeeeeEE------EEEECCCCChHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 45899999999998888 88766665 356676311 22 468888888888854
No 36
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=30.23 E-value=1.3e+02 Score=18.13 Aligned_cols=41 Identities=27% Similarity=0.273 Sum_probs=28.0
Q ss_pred CCeeeCCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEeCCCCEE
Q 031678 27 ENYTKRDSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRRI 69 (155)
Q Consensus 27 ~~~~~~~~Gv~y~v~~~G~G~~~~~gd~V~v~y~~~~~dg~~~ 69 (155)
....++++|=-|+.-.+=+=..+++|..|.|+|...+ |+.+
T Consensus 16 ~~titLdDGksy~lp~ef~~~~L~~G~kV~V~yd~~~--gk~v 56 (61)
T PF07076_consen 16 TMTITLDDGKSYKLPEEFDFDGLKPGMKVVVFYDEVD--GKRV 56 (61)
T ss_pred ceEEEecCCCEEECCCcccccccCCCCEEEEEEEccC--CcEE
Confidence 3446788888888544434356999999999996543 5443
No 37
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=29.36 E-value=2.4e+02 Score=26.29 Aligned_cols=25 Identities=8% Similarity=0.191 Sum_probs=21.4
Q ss_pred CcchHHHHHHcCCCCccEEEEEeCC
Q 031678 87 ALVPGFEEGIRDMRPGGKRRIIIPP 111 (155)
Q Consensus 87 ~~~~gl~~~l~~m~~Ge~~~v~ip~ 111 (155)
.....+..||.|.++||.+.+.+|.
T Consensus 866 S~~SPLGkALLGkkvGD~V~v~~P~ 890 (906)
T PRK14720 866 SYQSPLGKSLLGKKEGDSLEFVIND 890 (906)
T ss_pred CCCCHHHHHHcCCCCCCEEEEEECC
Confidence 3456899999999999999998865
No 38
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=29.02 E-value=2e+02 Score=21.27 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=39.3
Q ss_pred CCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCCCcc-hHH-HHHHcCCCCccEEEEEeCC
Q 031678 48 CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALV-PGF-EEGIRDMRPGGKRRIIIPP 111 (155)
Q Consensus 48 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~-~gl-~~~l~~m~~Ge~~~v~ip~ 111 (155)
.+..|+.+.+.+.+.+.+|.....+ ..+.++.+.-- .-+ ..+|..+..|++..+--+.
T Consensus 71 ~~~~g~~lrl~V~G~~~~G~~~~k~------v~lpl~~~~~g~eRL~~~GL~l~~e~~~~~Vd~v~ 130 (183)
T PF11874_consen 71 QLPPGSSLRLRVEGPDFEGDPVTKT------VLLPLGDGADGEERLEAAGLTLMEEGGKVIVDEVE 130 (183)
T ss_pred cCCCCCEEEEEEEccCCCCCceEEE------EEEEcCCCCCHHHHHHhCCCEEEeeCCEEEEEecC
Confidence 3678999999999988888766543 34566555411 112 2377788899998776654
No 39
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=28.13 E-value=1.6e+02 Score=18.45 Aligned_cols=59 Identities=19% Similarity=0.225 Sum_probs=35.6
Q ss_pred CCCCCCEEEEEEEEEeCCCCEEeccc------cCCccEEEEeCCCCcchH-HHHHHcCCCCccEEEEEeCC
Q 031678 48 CPKDGQQVIFHYIGYNESGRRIDSTY------LQGSPARIRMGTNALVPG-FEEGIRDMRPGGKRRIIIPP 111 (155)
Q Consensus 48 ~~~~gd~V~v~y~~~~~dg~~~~st~------~~~~p~~~~~g~~~~~~g-l~~~l~~m~~Ge~~~v~ip~ 111 (155)
...+|+.|.++.. .+|..+...| .....+.|.+... ..| +...|..|++|+++.+.-|.
T Consensus 29 ~~~pGQ~v~v~~~---~~~~~~~R~yS~~s~~~~~~~~~~~ik~~--~~G~~S~~L~~l~~Gd~v~i~gP~ 94 (99)
T PF00970_consen 29 DFKPGQFVSVRVP---INGKQVSRPYSPASSPDDKGYLEFAIKRY--PNGRVSRYLHQLKPGDEVEIRGPY 94 (99)
T ss_dssp SSTTT-EEEEEEE---ETTEEEEEEEEBCSSTTSSSEEEEEEEEC--TTSHHHHHHHTSCTTSEEEEEEEE
T ss_pred ccCcceEEEEEEc---cCCcceecceeEeeecCCCCcEEEEEEec--cCCHHHHHHHhCCCCCEEEEEEcc
Confidence 4778999999887 2444222222 1222455555222 222 56677889999999998774
No 40
>PRK12426 elongation factor P; Provisional
Probab=26.39 E-value=2.1e+02 Score=21.16 Aligned_cols=54 Identities=6% Similarity=0.082 Sum_probs=31.2
Q ss_pred EEEEEEEeC-CCCEEeccccCCccE----------EEEeCCCC------------c-c--hHHHHHHcCCCCccEEEEEe
Q 031678 56 IFHYIGYNE-SGRRIDSTYLQGSPA----------RIRMGTNA------------L-V--PGFEEGIRDMRPGGKRRIII 109 (155)
Q Consensus 56 ~v~y~~~~~-dg~~~~st~~~~~p~----------~~~~g~~~------------~-~--~gl~~~l~~m~~Ge~~~v~i 109 (155)
.++.+.++. +|.+++.++..+..+ ++....+. + + .-+..+..-|+.|..+.+..
T Consensus 36 ~vr~klknl~tG~~~e~tf~s~ek~e~a~ve~~~~qylY~dg~~~~FMd~etyeQi~i~~~~lgd~~~fL~e~~~v~v~~ 115 (185)
T PRK12426 36 FIKVSLQAADSDVVVERNFKAGQEVKEAQFEPRNLEYLYLEGDEYLFLDLGNYDKIYIPKEIMKDNFLFLKAGVTVSALV 115 (185)
T ss_pred EEEEEEEEcCCCCeEEEEECCCCeEEEeEEEeeEeEEEEECCCeEEEecCCCceEEEeCHHHhhhHHhhccCCCEEEEEE
Confidence 444555655 788888887544332 22221111 0 1 23666778899998877655
No 41
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=25.91 E-value=1.9e+02 Score=22.70 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=34.2
Q ss_pred CCCCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCC--Cc----chHHHHHHcCCCCcc
Q 031678 46 GDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTN--AL----VPGFEEGIRDMRPGG 103 (155)
Q Consensus 46 G~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~--~~----~~gl~~~l~~m~~Ge 103 (155)
...++.||.|.+++-+.. ||..-+.+ .++.+|.. .+ ..+++.++..+++|-
T Consensus 72 ~~~l~~GDvV~iD~G~~~-dGY~aD~a------rT~~vG~~~~~l~~a~~~A~~aai~~~kPGv 128 (295)
T TIGR00501 72 KTVFKDGDVVKLDLGAHV-DGYIADTA------ITVDLGDQYDNLVKAAKDALYTAIKEIRAGV 128 (295)
T ss_pred CccCCCCCEEEEEEeEEE-CCEEEEEE------EEEEeCcHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 346899999999987666 88755554 24555542 12 245777888888883
No 42
>PF02149 KA1: Kinase associated domain 1; InterPro: IPR001772 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. Members of the KIN2/PAR-1/MARK kinase subfamily are conserved from yeast to human and share the same domain organisation: an N-terminal kinase domain (IPR000719 from INTERPRO) and a C-terminal kinase associated domain 1 (KA1). Some members of the KIN1/PAR-1/MARK family also contain an UBA domain (IPR000449 from INTERPRO). Members of this kinase subfamily are involved in various biological processes such as cell polarity, cell cycle control, intracellular signalling, microtubule stability and protein stability []. The function of the KA1 domain is not yet known. Some proteins known to contain a KA1 domain are listed below: Mammalian MAP/microtubule affinity-regulating kinases (MARK 1,2,3). They regulate polarity in neuronal cell models and appear to function redundantly in phosphorylating MT-associated proteins and in regulating MT stability []. Mammalian maternal embryonic leucine zipper kinase (MELK). It phosphorylates ZNF622 and may contribute to its redirection to the nucleus. It may be involved in the inhibition of spliceosome assembly during mitosis. Caenorhabditis elegans and drosophila PAR-1 protein. It is required for establishing polarity in embryos where it is asymmetrically distributed []. Fungal Kin1 and Kin2 protein kinases involved in regulation of exocytosis. They localise to the cytoplasmic face of the plasma membrane []. Plant KIN10 and KIN11 proteins, catalytic subunits of the putative trimeric SNF1-related protein kinase (SnRK) complex. This entry represents the KA1 domain.; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3OSE_A 1V5S_A 1UL7_A.
Probab=25.08 E-value=98 Score=17.35 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=12.0
Q ss_pred CCeEEEEEEEEeeec
Q 031678 126 KQFEVFDVELLSVQD 140 (155)
Q Consensus 126 ~~~l~~~v~vl~v~~ 140 (155)
++.+.||++|.++..
T Consensus 2 ~~~v~fEieV~kl~~ 16 (47)
T PF02149_consen 2 KEVVKFEIEVCKLPR 16 (47)
T ss_dssp CC-EEEEEEEEEECC
T ss_pred CcceEEEEEEEEecC
Confidence 467999999999975
No 43
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=24.64 E-value=1.9e+02 Score=20.77 Aligned_cols=20 Identities=10% Similarity=0.111 Sum_probs=17.6
Q ss_pred cchHHHHHHcCCCCccEEEE
Q 031678 88 LVPGFEEGIRDMRPGGKRRI 107 (155)
Q Consensus 88 ~~~gl~~~l~~m~~Ge~~~v 107 (155)
+...+..+|.|.++||.+.+
T Consensus 130 ~~SPlG~ALlGk~vGD~V~v 149 (160)
T PRK06342 130 YVSPVARALMGKAVGDVVSV 149 (160)
T ss_pred ccCHHHHHHcCCCCCCEEEE
Confidence 45679999999999999987
No 44
>PRK08051 fre FMN reductase; Validated
Probab=24.49 E-value=3e+02 Score=20.41 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=41.4
Q ss_pred CCCeEEEEEEcCCCCCCCCCCEEEEEEEEEeCCCCE---EeccccCCccEEEEeCCCC--cchHHHHHHcCCCCccEEEE
Q 031678 33 DSGLIYRDFEVGKGDCPKDGQQVIFHYIGYNESGRR---IDSTYLQGSPARIRMGTNA--LVPGFEEGIRDMRPGGKRRI 107 (155)
Q Consensus 33 ~~Gv~y~v~~~G~G~~~~~gd~V~v~y~~~~~dg~~---~~st~~~~~p~~~~~g~~~--~~~gl~~~l~~m~~Ge~~~v 107 (155)
...++.-.++..+.-..++|+.|.+.... .... +.|.......+.|.+.... ... ...+..+++|+++.+
T Consensus 14 ~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~---~~~r~ySias~p~~~~~l~~~v~~~~~~~~~--~~~~~~l~~G~~v~v 88 (232)
T PRK08051 14 TDTVYRVRLVPEAPFSFRAGQYLMVVMGE---KDKRPFSIASTPREKGFIELHIGASELNLYA--MAVMERILKDGEIEV 88 (232)
T ss_pred CCCeEEEEEecCCCCccCCCCEEEEEcCC---CcceeecccCCCCCCCcEEEEEEEcCCCcch--HHHHHHcCCCCEEEE
Confidence 45555555555444457899999887632 1211 2122112334555553311 111 234578899999998
Q ss_pred EeCCCC
Q 031678 108 IIPPEL 113 (155)
Q Consensus 108 ~ip~~~ 113 (155)
.-|...
T Consensus 89 ~gP~G~ 94 (232)
T PRK08051 89 DIPHGD 94 (232)
T ss_pred EcCCCc
Confidence 877543
No 45
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=24.39 E-value=1.1e+02 Score=19.19 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=20.3
Q ss_pred HHHHHHcCCCCccEEEEEeCCCCC
Q 031678 91 GFEEGIRDMRPGGKRRIIIPPELG 114 (155)
Q Consensus 91 gl~~~l~~m~~Ge~~~v~ip~~~~ 114 (155)
-...+|..|+.|+..+|......+
T Consensus 21 ~~kk~l~~m~~Ge~LeV~~ddp~~ 44 (78)
T COG0425 21 ETKKALAKLKPGEILEVIADDPAA 44 (78)
T ss_pred HHHHHHHcCCCCCEEEEEecCcch
Confidence 367899999999999999976544
No 46
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=23.75 E-value=2.1e+02 Score=22.40 Aligned_cols=52 Identities=15% Similarity=0.290 Sum_probs=34.3
Q ss_pred CCCCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCC--C----cchHHHHHHcCCCCccE
Q 031678 46 GDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTN--A----LVPGFEEGIRDMRPGGK 104 (155)
Q Consensus 46 G~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~--~----~~~gl~~~l~~m~~Ge~ 104 (155)
...++.||.|.++.-... ||..-+.++ ++.+|.. . ...+++.++..|++|-+
T Consensus 68 ~~~l~~GDvV~iD~G~~~-dGY~sD~ar------T~~vg~~~~~l~ea~~~A~~~ai~~ikPG~~ 125 (291)
T cd01088 68 DTVLKEGDVVKLDFGAHV-DGYIADSAF------TVDFDPKYDDLLEAAKEALNAAIKEAGPDVR 125 (291)
T ss_pred CcccCCCCEEEEEEEEEE-CCEEEEEEE------EEecChhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 356899999999987655 776555442 3445432 1 23467778888888843
No 47
>TIGR01024 rplS_bact ribosomal protein L19, bacterial type. This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs.
Probab=23.71 E-value=96 Score=21.08 Aligned_cols=76 Identities=17% Similarity=0.100 Sum_probs=41.0
Q ss_pred CCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCCCcchHHHHHHcCCCCccEEEEEeCCCCCCCCCCCCCCCCCC
Q 031678 48 CPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRPGGKRRIIIPPELGPPVGPSTFFSAKQ 127 (155)
Q Consensus 48 ~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~ip~~~~yg~~~~~~ip~~~ 127 (155)
....||.|.|+|...-.+-+.+.. + .|+-.+..+-..+.++++.-- .+|.+.+..+|-.+
T Consensus 18 ~f~~GD~v~V~~~i~eg~k~R~q~-------f----------~GvvI~~~~~G~~~tftvR~i---~~gvGVEr~fpl~S 77 (113)
T TIGR01024 18 DFRVGDTVRVHVKIVEGKKERIQV-------F----------EGVVIARRGGGIGETFTVRKI---SYGVGVERIFPLHS 77 (113)
T ss_pred ccCCCCEEEEEEEEccCCceEccc-------E----------EEEEEEEeCCCCceEEEEEEe---ccCccEEEEEEcCC
Confidence 477999999999764322111111 1 111112222222333333322 34556666677788
Q ss_pred eEEEEEEEEeeecCCc
Q 031678 128 FEVFDVELLSVQDCQR 143 (155)
Q Consensus 128 ~l~~~v~vl~v~~~~~ 143 (155)
+.+-.|+|+.-.+...
T Consensus 78 P~I~~IeVl~~~kvrR 93 (113)
T TIGR01024 78 PNIDSIEVVRRGKVRR 93 (113)
T ss_pred CccceEEEEEeCccch
Confidence 8889999998765443
No 48
>PRK08671 methionine aminopeptidase; Provisional
Probab=23.12 E-value=2.3e+02 Score=22.24 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=34.0
Q ss_pred CCCCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCC--C----cchHHHHHHcCCCCcc
Q 031678 46 GDCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTN--A----LVPGFEEGIRDMRPGG 103 (155)
Q Consensus 46 G~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~--~----~~~gl~~~l~~m~~Ge 103 (155)
...++.||.|.+++-+.. ||..-+.++ ++.+|.. . ...+++.++..+++|-
T Consensus 69 ~~~l~~GDvV~iD~G~~~-dGY~aD~ar------T~~vG~~~~~l~~a~~~a~~aai~~ikpG~ 125 (291)
T PRK08671 69 ERVFPEGDVVKLDLGAHV-DGYIADTAV------TVDLGGKYEDLVEASEEALEAAIEVVRPGV 125 (291)
T ss_pred CcccCCCCEEEEEEeEEE-CCEEEEEEE------EEEeChhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 346889999999987655 777655542 3555532 1 2345777888888883
No 49
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.84 E-value=2e+02 Score=19.73 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=15.4
Q ss_pred CCCCCEEEEEEEEEeCC-CC
Q 031678 49 PKDGQQVIFHYIGYNES-GR 67 (155)
Q Consensus 49 ~~~gd~V~v~y~~~~~d-g~ 67 (155)
+..||.|++||--+... |.
T Consensus 71 iadGdLV~vh~hqt~~~pg~ 90 (129)
T COG4922 71 IADGDLVTVHYHQTVSEPGS 90 (129)
T ss_pred eccCCEEEEEEeeeeCCCCc
Confidence 77899999999888754 44
No 50
>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5.2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....
Probab=21.82 E-value=1.2e+02 Score=19.11 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=22.2
Q ss_pred eCCCCcchHHHHHHcCCCCccEEEEE
Q 031678 83 MGTNALVPGFEEGIRDMRPGGKRRII 108 (155)
Q Consensus 83 ~g~~~~~~gl~~~l~~m~~Ge~~~v~ 108 (155)
+..+.+.+.+..++..|++|+.....
T Consensus 57 ~~~~~l~~~~~~~~~~l~~Gevs~pi 82 (95)
T PF00639_consen 57 ISRGQLPPEFEKALFALKPGEVSKPI 82 (95)
T ss_dssp EETTSSBHHHHHHHHTSTTTSBEEEE
T ss_pred ccCCcccHHHHHHHHhCCCCCcCCCE
Confidence 44578999999999999999988655
No 51
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=21.37 E-value=89 Score=23.30 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=19.1
Q ss_pred CCCCcchHHHHHHcCCCCccEE
Q 031678 84 GTNALVPGFEEGIRDMRPGGKR 105 (155)
Q Consensus 84 g~~~~~~gl~~~l~~m~~Ge~~ 105 (155)
..+++.+.|.+++..|++|+..
T Consensus 188 ~~~~l~~~~~~a~~~l~~G~is 209 (232)
T TIGR02925 188 PAEQLPAEILAVLAKLKPGAPL 209 (232)
T ss_pred chhhCCHHHHHHHHhCCCCCeE
Confidence 3467889999999999999985
No 52
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=21.26 E-value=1.6e+02 Score=25.12 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=34.8
Q ss_pred CCCCCCCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCC--Cc----chHHHHHHcCCCCccE
Q 031678 47 DCPKDGQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTN--AL----VPGFEEGIRDMRPGGK 104 (155)
Q Consensus 47 ~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~--~~----~~gl~~~l~~m~~Ge~ 104 (155)
..++.||.|.|++-+.. ||...++++ ++.+|.. .+ ..+++.|+..+++|-+
T Consensus 232 ~vLk~GDvVkID~G~~v-dGYiaD~Ar------Tv~vg~~~~~L~eAv~eA~~aaI~~~kpGv~ 288 (470)
T PTZ00053 232 TVLTYDDVCKLDFGTHV-NGRIIDCAF------TVAFNPKYDPLLQATKDATNTGIKEAGIDVR 288 (470)
T ss_pred cEecCCCeEEEEEeEEE-CCEEEeEEE------EEEeCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45889999999998877 888777764 3444431 12 2456777777777743
No 53
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=20.49 E-value=1.4e+02 Score=17.91 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=19.4
Q ss_pred HHHHHcCCCCccEEEEEeCCCCC
Q 031678 92 FEEGIRDMRPGGKRRIIIPPELG 114 (155)
Q Consensus 92 l~~~l~~m~~Ge~~~v~ip~~~~ 114 (155)
...+|..|+.|+...+.+....+
T Consensus 16 ~kkal~~l~~G~~l~V~~d~~~a 38 (69)
T cd03420 16 LKKEIDKLQDGEQLEVKASDPGF 38 (69)
T ss_pred HHHHHHcCCCCCEEEEEECCccH
Confidence 67899999999999999975543
No 54
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=20.37 E-value=1.6e+02 Score=18.65 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=22.1
Q ss_pred CCEEEEEEEEEeCCCCEEeccccCCccEEEEeCCCCcchHHHHHHcCCCC---ccEEEEEeC
Q 031678 52 GQQVIFHYIGYNESGRRIDSTYLQGSPARIRMGTNALVPGFEEGIRDMRP---GGKRRIIIP 110 (155)
Q Consensus 52 gd~V~v~y~~~~~dg~~~~st~~~~~p~~~~~g~~~~~~gl~~~l~~m~~---Ge~~~v~ip 110 (155)
|+.|+|.|...+.. + ....-+.+..|-+..-..-...+..|+. ++.+...|.
T Consensus 1 G~~vtVyYn~~~~~---l----~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~ 55 (87)
T PF03423_consen 1 GETVTVYYNPSLTA---L----SGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVD 55 (87)
T ss_dssp -SEEEEEE---E-S---S----S-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE
T ss_pred CCEEEEEEEeCCCC---C----CCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEE
Confidence 67888988653311 0 0012244555555433222334566665 677666664
Done!